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	Amedeo Prize 2008 The 21 Finalists

Hepatitis C

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April 2008
1. MUNOZ DE RUEDA P , Casado J, Paton R, Quintero D, et al
   Prospective studies of mutations in the E2-PePHD, NS5A-PKRBD, NS5A-ISDR and NS5A-V3 regions of hepatitis C virus genotype 1 and their relationship to peginterferon and ribavirin treatment response.
   J Virol. 2008;.
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2. MACHIDA K , Kondo Y, Huang J, Chen YC, et al
   HCV-induced Immunoglobulin Hypermutation Reduces the Affinity and Neutralizing Activities of Antibodies against HCV Envelope Protein.
   J Virol. 2008;.
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3. KECK ZY , Li TK, Xia J, Gal-Tanamy M, et al
   Definition of a Conserved Immunodominant Domain on HCV E2 Glycoprotein by Neutralizing Human Monoclonal Antibodies.
   J Virol. 2008;.
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4. ZHANG Z , Harris D, Pandey VN
   The FUSE Binding Protein Is a Cellular Factor Required for Efficient Replication of Hepatitis C Virus.
   J Virol. 2008;.
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5. KECK ZY , Olson O, Gal-Tanamy M, Xia J, et al
   A point mutation leading to hepatitis C virus escape from neutralization by a monoclonal antibody to a conserved conformational epitope.
   J Virol. 2008;.
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6. YANG F , Robotham JM, Nelson HB, Irsigler A, et al
   Cyclophilin A is an Essential Cofactor for Hepatitis C Virus Infection and the Principal Mediator of Cyclosporine A Resistance In Vitro.
   J Virol. 2008;.
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   March 2008
7. AIZAKI H , Morikawa K, Fukasawa M, Hara H, et al
   A Critical Role of Virion-Associated Cholesterol and Sphingolipid in Hepatitis C Virus Infection.
   J Virol. 2008;.
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8. BOWEN DG , Shoukry NH, Grakoui A, Fuller MJ, et al
   Variable patterns of programmed death-1 (PD-1) expression on fully functional memory T cells following spontaneous resolution of hepatitis C virus infection.
   J Virol. 2008;.
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9. HARRIS HJ , Farquhar MJ, Mee CJ, Davis C, et al
   CD81 and Claudin 1 co-receptor association: a role in hepatitis C virus entry.
   J Virol. 2008;.
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10. EBINUMA H , Nakamoto N, Li Y, Price DA, et al
    Identification and in-vitro expansion of functional antigen-specific CD25+FoxP3+ regulatory T-cells in hepatitis C virus infection.
    J Virol. 2008;.
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    February 2008
11. TILTON JC , Manion MM, Luskin MR, Johnson AJ, et al
    HIV Viremia Induces Plasmacytoid Dendritic Cell Activation In Vivo and Diminished Interferon-{alpha} Production In Vitro.
    J Virol. 2008;.
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    January 2008
12. MEERTENS L , Bertaux C, Cukierman L, Cormier E, et al
    The tight junction proteins claudin-1, -6 and -9 are entry cofactors for the Hepatitis C virus.
    J Virol. 2008;.
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13. OKAMOTO T , Omori H, Kaname Y, Abe T, et al
    A Single Amino Acid Mutation in Hepatitis C Virus NS5A Disrupting FKBP8 Interaction Impairs Viral Replication.
    J Virol. 2008;.
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14. NEUMANN-HAEFELIN C , Frick DN, Wang JJ, Pybus OG, et al
    Analysis of the evolutionary forces in an immunodominant CD8 epitope in the hepatitis C virus at a population level.
    J Virol. 2008;.
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15. BARTH H , Schnober EK, Neumann-Haefelin C, Thumann C, et al
    Scavenger Receptor Class B is Required for Hepatitis C Virus Uptake and Cross-presentation by Human Dendritic Cells.
    J Virol. 2008;.
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16. SAITO K , Ait-Goughoulte M, Truscott SM, Meyer K, et al
    HEPATITIS C VIRUS INHIBITS CELL SURFACE EXPRESSION OF HLA-DR, PREVENTS DENDRITIC CELL MATURATION AND INDUCES IL-10 PRODUCTION.
    J Virol. 2008;.
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17. YERLY D , Heckerman D, Allen TM, Chisholm JV 3rd, et al
    Increased CTL epitope variant cross-recognition and functional avidity are associated with HCV clearance.
    J Virol. 2008;.
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    December 2007
18. KASPROWICZ V , Schulze Zur Wiesch J, Kuntzen T, Nolan BE, et al
    High PD-1 expression on HCV-specific CD8+ and CD4+ T cells during acute Hepatitis C irrespective of clinical outcome.
    J Virol. 2007;.
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19. TAGUWA S , Okamoto T, Abe T, Mori Y, et al
    Human Butyrate-Induced Transcript 1 Interacts with Hepatitis C Virus NS5A and Regulates Viral Replication.
    J Virol. 2007;.
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20. BANERJEE S , Saito K, Ait-Goughoulte M, Meyer K, et al
    HEPATITIS C VIRUS CORE PROTEIN UPREGULATES SERINE PHOSPHORYLATION OF IRS-1 AND IMPAIRS DOWNSTREAM AKT/PKB SIGNALING PATHWAY FOR INSULIN RESISTANCE.
    J Virol. 2007;.
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21. MEYER K , Ait-Goughoulte M, Keck ZY, Foung S, et al
    ANTIBODY DEPENDENT ENHANCEMENT OF HEPATITIS C INFECTION.
    J Virol. 2007;.
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22. TARGETT-ADAMS P , Boulant S, McLauchlan J
    Visualization of double-stranded RNA in cells supporting hepatitis C virus RNA replication.
    J Virol. 2007;.
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23. BAKHSHESH M , Groppelli E, Willcocks MM, Royall E, et al
    The Picornavirus Avian Encephalomyelitis Virus possesses a Hepatitis C Virus-like internal ribosome entry site (IRES) element.
    J Virol. 2007;.
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24. JIANG D , Guo H, Xu C, Chang J, et al
    Identification of Three Interferon Inducible Cellular Enzymes that Inhibit the Replication of Hepatitis C Virus.
    J Virol. 2007;.
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25. GASTAMINZA P , Cheng G, Wieland S, Zhong J, et al
    Cellular determinants of hepatitis C virus assembly, maturation, degradation and secretion.
    J Virol. 2007;.
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26. AIT-GOUGHOULTE M , Kanda T, Meyer K, Ryerse JS, et al
    HEPATITIS C VIRUS GENOTYPE 1a GROWTH AND INDUCTION OF AUTOPHAGY.
    J Virol. 2007;.
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    November 2007
27. SMYK-PEARSON S , Tester IA, Klarquist J, Palmer BE, et al
    Spontaneous Recovery in Acute Human HCV Infection: Functional T Cell Thresholds and Relative Importance of CD4 Help.
    J Virol. 2007;.
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28. MEHTA AS , Long RE, Comunale MA, Rodemich L, et al
    Increased levels of galactose-deficient anti-gal IgG in the sera of HCV infected individuals with fibrosis and cirrhosis.
    J Virol. 2007;.
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29. TELLINGHUISEN TL , Foss KL, Treadaway JC, Rice CM, et al
    Identification of Residues Required for RNA Replication in Domains II and III of the Hepatitis C Virus NS5A Protein.
    J Virol. 2007;.
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30. PEROTTI M , Mancini N, Diotti RA, Tarr AW, et al
    IDENTIFICATION OF A BROADLY CROSS-REACTING AND NEUTRALIZING HUMAN MONOCLONAL ANTIBODY DIRECTED AGAINST THE HCV\E2 PROTEIN.
    J Virol. 2007;.
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    October 2007
31. MEUNIER JC , Russell RS, Goossens V, Priem S, et al
    Isolation and characterization of broadly neutralizing human monoclonal antibodies to E1 glycoprotein of hepatitis C virus.
    J Virol. 2007;.
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32. MEE CJ , Grove J, Harris HJ, Hu K, et al
    Effect of cell polarization on hepatitis C virus viral entry.
    J Virol. 2007;.
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33. MOLINA S , Castet V, Pichard-Garcia L, Wychowski C, et al
    Serum derived HCV infection of primary human hepatocytes is tetraspanin CD81 dependent.
    J Virol. 2007;.
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34. YOU S , Rice CM
    3' RNA elements in hepatitis C virus replication: Kissing partners and long poly (U).
    J Virol. 2007;.
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35. CHANG KS , Jiang J, Cai Z, Luo G, et al
    Human apolipoprotein E is required for Infectivity and Production of Hepatitis C Virus in Cell Culture.
    J Virol. 2007;.
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    September 2007
36. KAUL A , Woerz I, Meuleman P, Leroux-Roels G, et al
    Cell culture adaptation of hepatitis C virus and in vivo viability of an adapted variant.
    J Virol. 2007;.
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37. ARIUMI Y , Kuroki M, Abe KI, Dansako H, et al
    DDX3 DEAD box RNA helicase is required for hepatitis C virus (HCV) RNA replication.
    J Virol. 2007;.
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38. KANDA T , Steele R, Ray R, Ray RB, et al
    HEPATITIS C VIRUS INFECTION INDUCES INTERFERON-{beta} SIGNALING PATHWAY IN IMMORTALIZED HUMAN HEPATOCYTES.
    J Virol. 2007;.
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39. ZHENG A , Yuan F, Li Y, Zhu F, et al
    Claudin-6 and Claudin-9 Function as Additional co-Receptors for Hepatitis C Virus.
    J Virol. 2007;.
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    August 2007
40. NOPPORNPANTH S , Smits SL, Lien TX, Poovorawan Y, et al
    Characterization of Hepatitis C Virus Deletion Mutants Circulating in Chronically Infected Patients.
    J Virol. 2007;.
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41. KUNTZEN T , Timm J, Berical A, Lewis-Ximenez LL, et al
    Viral Sequence Evolution in Acute HCV Infection.
    J Virol. 2007;.
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42. SKLAN EH , Staschke K, Oakes TM, Elazar M, et al
    A Rab-GAP TBC Domain Protein Binds Hepatitis C Virus NS5A and Mediates Viral Replication.
    J Virol. 2007;.
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43. MURAYAMA A , Date T, Morikawa K, Akazawa D, et al
    The NS3 helicase and NS5B-to-3'X regions are important for efficient hepatitis C virus strain JFH-1 replication in Huh7 cells.
    J Virol. 2007;81:8030-40.
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    July 2007
44. MURRAY CL , Jones CT, Tassello J, Rice CM, et al
    Alanine Scanning of the Hepatitis C Virus Core Protein Reveals Numerous Residues Essential for Infectious Virus Production.
    J Virol. 2007;.
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45. NASIMUZZAMAN M , Waris G, Mikolon D, Stupack DG, et al
    Hepatitis C Virus Stabilizes Hypoxia-Inducible Factor-1{alpha} (HIF-1{alpha}) and Stimulates the Synthesis of Vascular Endothelial Growth Factor (VEGF).
    J Virol. 2007;.
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46. CHANG KO , George DW
    Bile Acids Promote the Expression of Hepatitis C Virus in Replicon-Harboring Cells.
    J Virol. 2007;.
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47. GUO H , Zhou T, Jiang D, Cuconati A, et al
    Regulation of Hepatitis B Virus Replication by Phosphoatidylinositol 3-kinase-Akt Signal Transduction Pathway.
    J Virol. 2007;.
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    June 2007
48. MCCAFFREY K , Boo I, Poumbourios P, Drummer HE, et al
    Expression and characterisation of a minimal HCV glycoprotein E2 core domain that retains CD81 binding.
    J Virol. 2007;.
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49. LINDENBACH BD , Pragai BM, Montserret R, Beran RK, et al
    The C-terminus of hepatitis C virus NS4A encodes an electrostatic switch that regulates NS5A hyperphosphorylation and viral replication.
    J Virol. 2007;.
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50. GOLDEN-MASON L , Palmer B, Klarquist J, Mengshol JA, et al
    UPREGULATION OF PD-1 EXPRESSION ON CIRCULATING AND INTRAHEPATIC HCV-SPECIFIC CD8+ T CELLS ASSOCIATED WITH REVERSIBLE IMMUNE DYSFUNCTION.
    J Virol. 2007;.
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51. ABE T , Kaname Y, Hamamoto I, Tsuda Y, et al
    Hepatitis C Virus Nonstructural Protein 5A Modulates TLR-MyD88-Dependent Signaling Pathway in the Macrophage Cell Lines.
    J Virol. 2007;.
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52. GOLDEN-MASON L , Castelblanco N, O'farrelly C, Rosen HR, et al
    Phenotypic and Functional Changes of Cytotoxic CD56pos NT Cells Determine Outcome of Acute HCV Infection.
    J Virol. 2007;.
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53. TANI H , Komoda Y, Matsuo E, Suzuki K, et al
    Replication-Competent Recombinant Vesicular Stomatitis Virus Encoding Hepatitis C Virus Envelope Proteins.
    J Virol. 2007;.
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    May 2007
54. LAVILLETTE D , Pecheur EI, Donot P, Fresquet J, et al
    Characterization of fusion determinants points to the involvement of three discrete regions of both E1 and E2 glycoproteins in the membrane fusion process of hepatitis C virus.
    J Virol. 2007;.
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55. JONES CT , Murray CL, Eastman DK, Tassello J, et al
    Hepatitis C virus p7 and NS2 proteins are essential for infectious virus production.
    J Virol. 2007;.
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56. DONLIN MJ , Cannon NA, Yao E, Li J, et al
    Pretreatment sequence diversity differences in the full-length Hepatitis C Virus open reading frame correlate with early response to therapy.
    J Virol. 2007;.
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57. HELLE F , Goffard A, Morel V, Duverlie G, et al
    The neutralizing activity of anti-HCV antibodies is modulated by specific glycans on the E2 envelope protein.
    J Virol. 2007;.
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58. TELLINGHUISEN TL , Evans MJ, von Hahn T, You S, et al
    Studying hepatitis C- making the best out of a bad virus..
    J Virol. 2007;.
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59. KOU YH , Chang MF, Wang YM, Hong TM, et al
    Differential requirements of NS4A for the internal NS3 cleavage and polyprotein processing of hepatitis C virus.
    J Virol. 2007;.
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60. WARIS G , Felmlee DJ, Negro F, Siddiqui A, et al
    Hepatitis C virus induces the proteolytic cleavage of sterol regulatory element binding proteins (SREBPs) and stimulates the phosphorylation of SREBPs via oxidative stress.
    J Virol. 2007;.
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61. CATANESE MT , Graziani R, von Hahn T, Moreau M, et al
    High avidity monoclonal antibodies against human scavenger receptor class B type I efficiently block hepatitis C virus infection in the presence of HDL.
    J Virol. 2007;.
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62. FALKOWSKA E , Kajumo F, Garcia E, Reinus J, et al
    Hepatitis C virus envelope glycoprotein E2 glycans modulate entry, CD81 binding and neutralization.
    J Virol. 2007;.
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63. CHEVALIEZ S , Brillet R, Lazaro E, Hezode C, et al
    ANALYSIS OF RIBAVIRIN MUTAGENICITY IN HUMAN HEPATITIS C VIRUS INFECTION.
    J Virol. 2007;.
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64. BARTOLOME J , Lopez-Alcorocho JM, Castillo I, Rodriguez-Inigo E, et al
    ULTRACENTRIFUGATION OF SERUM SAMPLES ALLOWS DETECTION OF HEPATITIS C VIRUS RNA IN PATIENTS WITH OCCULT HEPATITIS C.
    J Virol. 2007;.
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    April 2007
65. PAUWELS F , Mostmans W, Quirynen LM, van der Helm L, et al
    Binding Site Identification and Genotypic Profiling of Hepatitis C Virus Polymerase Inhibitors.
    J Virol. 2007;.
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66. CHO NJ , Cheong KH, Lee CH, Frank CW, et al
    Binding dynamics of hepatitis C virus' NS5A amphipathic peptide to cell and model membranes.
    J Virol. 2007;.
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67. SAKAI A , Takikawa S, Thimme R, Meunier JC, et al
    In Vivo study of the HC-TN Strain of Hepatitis C Virus Recovered from a Case of Fulminant Hepatitis: RNA Transcripts of a Molecular Clone (pHC-TN) are Infectious in Chimpanzees but not in Huh7.5 cells.
    J Virol. 2007;.
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    March 2007
68. ALATRAKCHI N , Graham CS, Van der Vliet J, Sherman KE, et al
    Hepatitis C virus (HCV) specific CD8+ cells produce TGF-beta that can suppress HCV-specific T cell responses.
    J Virol. 2007;.
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69. RODRIGUE-GERVAIS IG , Jouan L, Beaule G, Sauve D, et al
    Poly(I:C) and LPS innate sensing functions of circulating human myeloid dendritic cells are affected in vivo in Hepatitis C virus-infected patients.
    J Virol. 2007;.
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70. ROBIDA JM , Nelson HB, Liu Z, Tang H, et al
    Characterization of Hepatitis C Virus Subgenomic Replicon Resistance to Cyclosporine A In Vitro.
    J Virol. 2007;.
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71. BLIGHT KJ
    Allelic variation in the hepatitis C virus NS4B protein dramatically influences RNA replication.
    J Virol. 2007;.
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72. BINDER M , Quinkert D, Bochkarova O, Klein R, et al
    Identification of determinants involved in initiation of hepatitis C virus RNA synthesis by using intergenotypic replicase chimeras.
    J Virol. 2007;.
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    February 2007
73. AKAZAWA D , Date T, Morikawa K, Murayama A, et al
    CD81 EXPRESSION IS IMPORTANT FOR HETEROGENEOUS HCV PERMISSIVENESS OF HUH7 CELL CLONES.
    J Virol. 2007;.
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74. WANG XH , Netski DM, Astemborski J, Mehta SH, et al
    Fibrosis Progression during Chronic Hepatitis C is Associated with Rapid Viral Evolution.
    J Virol. 2007;.
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75. CAI Z , Cai L, Jiang J, Chang KS, et al
    Human Serum Amyloid A Protein Inhibits Hepatitis C Virus Entry into Cells.
    J Virol. 2007;.
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76. BIANCHETTIN G , Bonaccini C, Oliva R, Tramontano A, et al
    ANALYSIS OF HEPATITIS C VIRUS HYPERVARIABLE REGION 1 SEQUENCE IN CRYOGLOBULINAEMIC PATIENTS AND ASSOCIATED CONTROLS.
    J Virol. 2007;.
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77. SCHALLER T , Appel N, Koutsoudakis G, Kallis S, et al
    Analysis of hepatitis C virus superinfection exclusion by using novel fluorochrome gene-tagged viral genomes.
    J Virol. 2007;.
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78. STONE M , Jia S, Do Heo W, Meyer T, et al
    Participation of Rab5, an early endosome protein, in hepatitis C virus RNA replication machinery.
    J Virol. 2007;.
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79. KATO T , Matsumura T, Heller T, Saito S, et al
    Production of Infectious Hepatitis C Virus of Various Genotypes in Cell Culture.
    J Virol. 2007;.
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80. BASU A , Kanda T, Beyene A, Saito K, et al
    SULFATED HOMOLOGUES OF HEPARIN INHIBIT HEPATITIS C VIRUS ENTRY INTO MAMMALIAN CELLS.
    J Virol. 2007;.
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81. TSCHERNE DM , Evans MJ, von Hahn T, Jones CT, et al
    Superinfection exclusion in cells infected with hepatitis C virus.
    J Virol. 2007;.
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    January 2007
82. LEGRAND-ABRAVANEL F , Claudinon J, Nicot F, Dubois M, et al
    A new natural intergenotypic (2/5) recombinant of Hepatitis C virus.
    J Virol. 2007;.
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83. TAYLOR MW , Tsukahara T, Brodsky L, Schaley J, et al
    Changes in gene expression during peginterferon and ribavirin therapy of chronic hepatitis C distinguish responders from non responders to antiviral therapy.
    J Virol. 2007;.
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84. LARREA E , Riezu-Boj JI, Gil-Guerrero L, Casares N, et al
    Upregulation of indoleamine 2,3 dioxygenase in hepatitis C virus infection.
    J Virol. 2007;.
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85. KIM CS , Seol SK, Song OK, Park JH, et al
    An RNA-binding protein hnRNP A1 and a scaffold protein septin 6 facilitate HCV replication.
    J Virol. 2007;.
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86. GROVE J , Huby T, Stamataki Z, Vanwolleghem T, et al
    Scavenger receptor BI and BII expression levels modulate Hepatitis C virus infectivity.
    J Virol. 2007;.
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    December 2006
87. BRASS V , Pal Z, Sapay N, Deleage G, et al
    Conserved Determinants for Membrane Association of Nonstructural Protein 5A from Hepatitis C Virus and Related Viruses.
    J Virol. 2006;.
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88. WYLES DL , Kaihara KA, Vaida F, Schooley RT, et al
    Synergy of small molecular inhibitors of HCV replication directed at multiple viral targets.
    J Virol. 2006;.
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89. RADZIEWICZ H , Ibegbu CC, Fernandez ML, Workowski KA, et al
    Liver infiltrating lymphocytes in chronic human HCV infection display an exhausted phenotype with high PD-1 and low CD127 expression.
    J Virol. 2006;.
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90. CICZORA Y , Callens N, Penin F, Pecheur EI, et al
    The transmembrane domains of HCV envelope glycoproteins: residues involved in E1E2 heterodimerization and involvement of these domains in virus entry.
    J Virol. 2006;.
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    November 2006
91. MIYAMOTO H , Moriishi K, Moriya K, Murata S, et al
    Involvement of PA28{gamma}-Dependent Pathway in Insulin Resistance Induced by Hepatitis C Virus Core Protein.
    J Virol. 2006;.
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92. SHIRAKURA M , Murakami K, Ichimura T, Suzuki R, et al
    The E6AP ubiquitin ligase mediates ubiquitylation and degradation of hepatitis C virus core protein.
    J Virol. 2006;.
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93. KANDA T , Steele R, Ray R, Ray RB, et al
    SMALL INTERFERING RNA TARGETED TO HEPATITIS C VIRUS 5'NONTRANSLATED REGION EXERTS POTENT ANTIVIRAL EFFECT.
    J Virol. 2006;.
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94. KECK ZY , Xia J, Cai Z, Li TK, et al
    Immunogenic and Functional Organization of Hepatitis C virus (HCV) Glycoprotein E2 on Infectious HCV Virions.
    J Virol. 2006;.
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95. BENGSCH B , Spangenberg HC, Kersting N, Neumann-Haefelin C, et al
    Analysis of CD127 and KLRG1 expression on HCV specific CD8+ T cells reveals the existence of different memory T cell subsets in the peripheral blood and liver.
    J Virol. 2006;.
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96. YI M , Ma Y, Yates J, Lemon SM, et al
    Compensatory mutations in E1, p7, NS2 and NS3 enhance yields of cell culture-infectious inter-genotypic chimeric hepatitis C virus.
    J Virol. 2006;.
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97. KOUTSOUDAKIS G , Herrmann E, Kallis S, Bartenschlager R, et al
    The level of CD81 cell surface expression is a key determinant for productive entry of Hepatitis C Virus into host cells.
    J Virol. 2006;.
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98. GAUDIERI S , Rauch A, Park LP, Freitas E, et al
    Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection.
    J Virol. 2006;80:11094-104.
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