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Articles published in PLoS Comput Biol

Retrieve available abstracts of 41 articles:
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Single Articles


    March 2017
  1. BASILE W, Sachenkova O, Light S, Elofsson A, et al
    High GC content causes orphan proteins to be intrinsically disordered.
    PLoS Comput Biol. 2017;13:e1005375.
    PubMed     Text format     Abstract available


    June 2016
  2. BRANKOVICS B, Zhang H, van Diepeningen AD, van der Lee TA, et al
    GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research.
    PLoS Comput Biol. 2016;12:e1004753.
    PubMed     Text format     Abstract available


    May 2016
  3. BENDL J, Musil M, Stourac J, Zendulka J, et al
    PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.
    PLoS Comput Biol. 2016;12:e1004962.
    PubMed     Text format     Abstract available


  4. BOHLER A, Wu G, Kutmon M, Pradhana LA, et al
    Reactome from a WikiPathways Perspective.
    PLoS Comput Biol. 2016;12:e1004941.
    PubMed     Text format     Abstract available


  5. BRECKELS LM, Holden SB, Wojnar D, Mulvey CM, et al
    Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics.
    PLoS Comput Biol. 2016;12:e1004920.
    PubMed     Text format     Abstract available


  6. KELLEHER J, Etheridge AM, McVean G
    Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes.
    PLoS Comput Biol. 2016;12:e1004842.
    PubMed     Text format     Abstract available


    April 2016
  7. BORNIGEN D, Tyekucheva S, Wang X, Rider JR, et al
    Computational Reconstruction of NFkappaB Pathway Interaction Mechanisms during Prostate Cancer.
    PLoS Comput Biol. 2016;12:e1004820.
    PubMed     Text format     Abstract available


  8. KENAH E, Britton T, Halloran ME, Longini IM Jr, et al
    Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees.
    PLoS Comput Biol. 2016;12:e1004869.
    PubMed     Text format     Abstract available


    March 2016
  9. VOGEL C
    Systems Approaches to the Eukaryotic Stress Response.
    PLoS Comput Biol. 2016;12:e1004757.
    PubMed     Text format    


  10. KARCHER MD, Palacios JA, Bedford T, Suchard MA, et al
    Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference.
    PLoS Comput Biol. 2016;12:e1004789.
    PubMed     Text format     Abstract available


  11. GREENBURY SF, Schaper S, Ahnert SE, Louis AA, et al
    Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability.
    PLoS Comput Biol. 2016;12:e1004773.
    PubMed     Text format     Abstract available


  12. SHEEHAN S, Song YS
    Deep Learning for Population Genetic Inference.
    PLoS Comput Biol. 2016;12:e1004845.
    PubMed     Text format     Abstract available


    February 2016
  13. ORTEGA DR, Zhulin IB
    Evolutionary Genomics Suggests That CheV Is an Additional Adaptor for Accommodating Specific Chemoreceptors within the Chemotaxis Signaling Complex.
    PLoS Comput Biol. 2016;12:e1004723.
    PubMed     Text format     Abstract available


  14. GUTURU H, Chinchali S, Clarke SL, Bejerano G, et al
    Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories.
    PLoS Comput Biol. 2016;12:e1004711.
    PubMed     Text format     Abstract available


  15. SENBABAOGLU Y, Sumer SO, Sanchez-Vega F, Bemis D, et al
    A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers.
    PLoS Comput Biol. 2016;12:e1004765.
    PubMed     Text format     Abstract available


    January 2016
  16. LAMPARTER D, Marbach D, Rueedi R, Kutalik Z, et al
    Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics.
    PLoS Comput Biol. 2016;12:e1004714.
    PubMed     Text format     Abstract available


    July 2015
  17. PERCHA B, Altman RB
    Learning the Structure of Biomedical Relationships from Unstructured Text.
    PLoS Comput Biol. 2015;11:e1004216.
    PubMed     Text format     Abstract available


  18. DEARLOVE BL, Frost SD
    Measuring Asymmetry in Time-Stamped Phylogenies.
    PLoS Comput Biol. 2015;11:e1004312.
    PubMed     Text format     Abstract available


  19. NUSSINOV R, Bonhoeffer S, Papin JA, Sporns O, et al
    From "What Is?" to "What Isn't?" Computational Biology.
    PLoS Comput Biol. 2015;11:e1004318.
    PubMed     Text format    


    May 2015
  20. ENGELMANN JC, Amann T, Ott-Rotzer B, Nutzel M, et al
    Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFkappaB Signaling in Hepatocellular Carcinoma.
    PLoS Comput Biol. 2015;11:e1004293.
    PubMed     Text format     Abstract available


  21. DIAMENT A, Tuller T
    Improving 3D Genome Reconstructions Using Orthologous and Functional Constraints.
    PLoS Comput Biol. 2015;11:e1004298.
    PubMed     Text format     Abstract available


  22. KURTZ ZD, Muller CL, Miraldi ER, Littman DR, et al
    Sparse and compositionally robust inference of microbial ecological networks.
    PLoS Comput Biol. 2015;11:e1004226.
    PubMed     Text format     Abstract available


    March 2015
  23. ALBANESE D, De Filippo C, Cavalieri D, Donati C, et al
    Explaining diversity in metagenomic datasets by phylogenetic-based feature weighting.
    PLoS Comput Biol. 2015;11:e1004186.
    PubMed     Text format     Abstract available


  24. VISSER MD, McMahon SM, Merow C, Dixon PM, et al
    Speeding up ecological and evolutionary computations in R; essentials of high performance computing for biologists.
    PLoS Comput Biol. 2015;11:e1004140.
    PubMed     Text format     Abstract available


  25. LIVNE OE, Han L, Alkorta-Aranburu G, Wentworth-Sheilds W, et al
    PRIMAL: Fast and accurate pedigree-based imputation from sequence data in a founder population.
    PLoS Comput Biol. 2015;11:e1004139.
    PubMed     Text format     Abstract available


  26. FORTNEY K, Griesman J, Kotlyar M, Pastrello C, et al
    Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data.
    PLoS Comput Biol. 2015;11:e1004068.
    PubMed     Text format     Abstract available


  27. WEIGHILL DA, Jacobson DA
    3-way networks: application of hypergraphs for modelling increased complexity in comparative genomics.
    PLoS Comput Biol. 2015;11:e1004079.
    PubMed     Text format     Abstract available


  28. HUTCHISON AL, Maienschein-Cline M, Chiang AH, Tabei SM, et al
    Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data.
    PLoS Comput Biol. 2015;11:e1004094.
    PubMed     Text format     Abstract available


    February 2015
  29. CAUFIELD JH, Abreu M, Wimble C, Uetz P, et al
    Protein complexes in bacteria.
    PLoS Comput Biol. 2015;11:e1004107.
    PubMed     Text format     Abstract available


  30. ALLEN B, Sample C, Dementieva Y, Medeiros RC, et al
    The molecular clock of neutral evolution can be accelerated or slowed by asymmetric spatial structure.
    PLoS Comput Biol. 2015;11:e1004108.
    PubMed     Text format     Abstract available


  31. DUAN G, Walther D
    The roles of post-translational modifications in the context of protein interaction networks.
    PLoS Comput Biol. 2015;11:e1004049.
    PubMed     Text format     Abstract available


  32. DIDELOT X, Wilson DJ
    ClonalFrameML: efficient inference of recombination in whole bacterial genomes.
    PLoS Comput Biol. 2015;11:e1004041.
    PubMed     Text format     Abstract available


    January 2015
  33. KASSAMBARA A, Reme T, Jourdan M, Fest T, et al
    GenomicScape: an easy-to-use web tool for gene expression data analysis. Application to investigate the molecular events in the differentiation of B cells into plasma cells.
    PLoS Comput Biol. 2015;11:e1004077.
    PubMed     Text format     Abstract available


  34. WILKE A, Bischof J, Harrison T, Brettin T, et al
    A RESTful API for accessing microbial community data for MG-RAST.
    PLoS Comput Biol. 2015;11:e1004008.
    PubMed     Text format     Abstract available


  35. PORTA PARDO E, Godzik A
    Analysis of individual protein regions provides novel insights on cancer pharmacogenomics.
    PLoS Comput Biol. 2015;11:e1004024.
    PubMed     Text format     Abstract available


    May 2014
  36. PAPAIX J, Burdon JJ, Lannou C, Thrall PH, et al
    Evolution of pathogen specialisation in a host metapopulation: joint effects of host and pathogen dispersal.
    PLoS Comput Biol. 2014;10:e1003633.
    PubMed     Text format     Abstract available


  37. FOGG CN, Kovats DE
    2014 ISCB Accomplishment by a Senior Scientist Award: Gene Myers.
    PLoS Comput Biol. 2014;10:e1003621.
    PubMed     Text format    


  38. GREENE D, Crona K
    The changing geometry of a fitness landscape along an adaptive walk.
    PLoS Comput Biol. 2014;10:e1003520.
    PubMed     Text format     Abstract available


  39. XIE L, Ge X, Tan H, Xie L, et al
    Towards structural systems pharmacology to study complex diseases and personalized medicine.
    PLoS Comput Biol. 2014;10:e1003554.
    PubMed     Text format     Abstract available


    February 2014
  40. LAO O, Liu F, Wollstein A, Kayser M, et al
    GAGA: a new algorithm for genomic inference of geographic ancestry reveals fine level population substructure in Europeans.
    PLoS Comput Biol. 2014;10:e1003480.
    PubMed     Text format     Abstract available


    January 2014
  41. HUANG S, Yee C, Ching T, Yu H, et al
    A novel model to combine clinical and pathway-based transcriptomic information for the prognosis prediction of breast cancer.
    PLoS Comput Biol. 2014;10:e1003851.
    PubMed     Text format     Abstract available


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