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  Genetics

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25.09.2017

1 Cell
2 Lancet Oncol
4 Nature
1 PLoS Comput Biol
50 PLoS One
2 Science


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Single Articles


    Cell

  1. ROAKE CM, Artandi SE
    Approaching TERRA Firma: Genomic Functions of Telomeric Noncoding RNA.
    Cell. 2017;170:8-9.
    PubMed     Text format     Abstract available


    Lancet Oncol

  2. BEANE J, Campbell JD, Lel J, Vick J, et al
    Genomic approaches to accelerate cancer interception.
    Lancet Oncol. 2017;18:e494-e502.
    PubMed     Text format     Abstract available

  3. TURAJLIC S, Litchfield K, Xu H, Rosenthal R, et al
    Insertion-and-deletion-derived tumour-specific neoantigens and the immunogenic phenotype: a pan-cancer analysis.
    Lancet Oncol. 2017;18:1009-1021.
    PubMed     Text format     Abstract available


    Nature

  4. DE CARLI GJ, Pereira TC
    Multidisciplinarity: Widen discipline span of Nature papers.
    Nature. 2017;545:289.
    PubMed     Text format    

  5. CALLAWAY E
    Ancient-genome study finds Bronze Age 'Beaker culture' invaded Britain.
    Nature. 2017;545:276-277.
    PubMed     Text format    

  6. WOROBEY M
    Epidemiology: Molecular mapping of Zika spread.
    Nature. 2017 May 24. doi: 10.1038/nature22495.
    PubMed     Text format    


  7. A sugar high in structural biology.
    Nature. 2017;546:186.
    PubMed     Text format    


    PLoS Comput Biol

  8. BASSANI-STERNBERG M, Chong C, Guillaume P, Solleder M, et al
    Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
    PLoS Comput Biol. 2017;13:e1005725.
    PubMed     Text format     Abstract available


    PLoS One

  9. PANTOJA Y, Pinheiro K, Veras A, Araujo F, et al
    PanWeb: A web interface for pan-genomic analysis.
    PLoS One. 2017;12:e0178154.
    PubMed     Text format     Abstract available

  10. ZAZA G, Dalla Gassa A, Felis G, Granata S, et al
    Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen.
    PLoS One. 2017;12:e0178228.
    PubMed     Text format     Abstract available

  11. KEARNEY P, Hunsucker SW, Li XJ, Porter A, et al
    An integrated risk predictor for pulmonary nodules.
    PLoS One. 2017;12:e0177635.
    PubMed     Text format     Abstract available

  12. MEI Y, Bi WL, Greenwald NF, Agar NY, et al
    Genomic profile of human meningioma cell lines.
    PLoS One. 2017;12:e0178322.
    PubMed     Text format     Abstract available

  13. KEPPLINGER D, Takhar M, Sasaki M, Hollander Z, et al
    PGCA: An algorithm to link protein groups created from MS/MS data.
    PLoS One. 2017;12:e0177569.
    PubMed     Text format     Abstract available

  14. BELL KL, Hamm CA, Shapiro AM, Nice CC, et al
    Sympatric, temporally isolated populations of the pine white butterfly Neophasia menapia, are morphologically and genetically differentiated.
    PLoS One. 2017;12:e0176989.
    PubMed     Text format     Abstract available

  15. BECKER MG, Walker PL, Pulgar-Vidal NC, Belmonte MF, et al
    SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets.
    PLoS One. 2017;12:e0178256.
    PubMed     Text format     Abstract available

  16. KIM JK, Bae SE, Lee SJ, Yoon MG, et al
    New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae).
    PLoS One. 2017;12:e0178001.
    PubMed     Text format     Abstract available

  17. LV Y
    Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus.
    PLoS One. 2017;12:e0178603.
    PubMed     Text format     Abstract available

  18. BARANZELLI MC, Cosacov A, Ferreiro G, Johnson LA, et al
    Travelling to the south: Phylogeographic spatial diffusion model in Monttea aphylla (Plantaginaceae), an endemic plant of the Monte Desert.
    PLoS One. 2017;12:e0178827.
    PubMed     Text format     Abstract available

  19. WANG Y, Liu A, Li W, Jiang Y, et al
    Comparative proteomic analysis of eggplant (Solanum melongena L.) heterostylous pistil development.
    PLoS One. 2017;12:e0179018.
    PubMed     Text format     Abstract available

  20. LEWANDOWSKA DW, Schreiber PW, Schuurmans MM, Ruehe B, et al
    Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection.
    PLoS One. 2017;12:e0177340.
    PubMed     Text format     Abstract available

  21. NEUDITSCHKO M, Raadsma HW, Khatkar MS, Jonas E, et al
    Identification of key contributors in complex population structures.
    PLoS One. 2017;12:e0177638.
    PubMed     Text format     Abstract available

  22. HAJRAH NH, Obaid AY, Atef A, Ramadan AM, et al
    Transcriptomic analysis of salt stress responsive genes in Rhazya stricta.
    PLoS One. 2017;12:e0177589.
    PubMed     Text format     Abstract available

  23. SADEGHINEJAD L, Cvitkovitch DG, Siqueira WL, Santerre JP, et al
    Triethylene Glycol Up-Regulates Virulence-Associated Genes and Proteins in Streptococcus mutans.
    PLoS One. 2016;11:e0165760.
    PubMed     Text format     Abstract available

  24. PETERSEN TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, et al
    MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
    PLoS One. 2017;12:e0176469.
    PubMed     Text format     Abstract available

  25. KOC I, Caetano-Anolles G
    The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.
    PLoS One. 2017;12:e0176129.
    PubMed     Text format     Abstract available

  26. PLAIRE D, Puaud S, Marsolier-Kergoat MC, Elalouf JM, et al
    Comparative analysis of the sensitivity of metagenomic sequencing and PCR to detect a biowarfare simulant (Bacillus atrophaeus) in soil samples.
    PLoS One. 2017;12:e0177112.
    PubMed     Text format     Abstract available

  27. DANTAS RCC, Silva RTE, Ferreira ML, Goncalves IR, et al
    Molecular epidemiological survey of bacteremia by multidrug resistant Pseudomonas aeruginosa: the relevance of intrinsic resistance mechanisms.
    PLoS One. 2017;12:e0176774.
    PubMed     Text format     Abstract available

  28. TRIFILETTI DM, Sturz VN, Showalter TN, Lobo JM, et al
    Towards decision-making using individualized risk estimates for personalized medicine: A systematic review of genomic classifiers of solid tumors.
    PLoS One. 2017;12:e0176388.
    PubMed     Text format     Abstract available

  29. HAEUSERMANN T, Greshake B, Blasimme A, Irdam D, et al
    Open sharing of genomic data: Who does it and why?
    PLoS One. 2017;12:e0177158.
    PubMed     Text format     Abstract available

  30. CASTLEY A, Sawleshwarkar S, Varma R, Herring B, et al
    A national study of the molecular epidemiology of HIV-1 in Australia 2005-2012.
    PLoS One. 2017;12:e0170601.
    PubMed     Text format     Abstract available

  31. VAHIA MN, Yadav N, Ladiwala U, Mathur D, et al
    A diffusion based study of population dynamics: Prehistoric migrations into South Asia.
    PLoS One. 2017;12:e0176985.
    PubMed     Text format     Abstract available

  32. ZHANG W, Xu J, Li Y, Zou X, et al
    A new two-stage method for revealing missing parts of edges in protein-protein interaction networks.
    PLoS One. 2017;12:e0177029.
    PubMed     Text format     Abstract available

  33. MONDEJAR R, Perez C, Onaindia A, Martinez N, et al
    Molecular basis of targeted therapy in T/NK-cell lymphoma/leukemia: A comprehensive genomic and immunohistochemical analysis of a panel of 33 cell lines.
    PLoS One. 2017;12:e0177524.
    PubMed     Text format     Abstract available

  34. NYINE M, Uwimana B, Swennen R, Batte M, et al
    Trait variation and genetic diversity in a banana genomic selection training population.
    PLoS One. 2017;12:e0178734.
    PubMed     Text format     Abstract available

  35. SAHLBERG BANG C, Demirel I, Kruse R, Persson K, et al
    Global gene expression profiling and antibiotic susceptibility after repeated exposure to the carbon monoxide-releasing molecule-2 (CORM-2) in multidrug-resistant ESBL-producing uropathogenic Escherichia coli.
    PLoS One. 2017;12:e0178541.
    PubMed     Text format     Abstract available

  36. MACKIEWICZ P, Moska M, Wierzbicki H, Gagat P, et al
    Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group.
    PLoS One. 2017;12:e0179760.
    PubMed     Text format     Abstract available

  37. XU K, Niu Q, Zhao H, Du Y, et al
    Transcriptomic analysis to uncover genes affecting cold resistance in the Chinese honey bee (Apis cerana cerana).
    PLoS One. 2017;12:e0179922.
    PubMed     Text format     Abstract available

  38. DUNCAN C, Jamieson FB, Troudt J, Izzo L, et al
    Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion.
    PLoS One. 2017;12:e0179996.
    PubMed     Text format     Abstract available

  39. HAN Z, Huang H, Gao Y, Huang Q, et al
    Functional annotation of Alzheimer's disease associated loci revealed by GWASs.
    PLoS One. 2017;12:e0179677.
    PubMed     Text format     Abstract available

  40. SINGH A, Sharma AK, Singh NK, Sharma TR, et al
    PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.
    PLoS One. 2017;12:e0179736.
    PubMed     Text format     Abstract available

  41. OLIVEIRA LR, Gehara MCM, Fraga LD, Lopes F, et al
    Ancient female philopatry, asymmetric male gene flow, and synchronous population expansion support the influence of climatic oscillations on the evolution of South American sea lion (Otaria flavescens).
    PLoS One. 2017;12:e0179442.
    PubMed     Text format     Abstract available

  42. EREZ O, Romero R, Maymon E, Chaemsaithong P, et al
    The prediction of late-onset preeclampsia: Results from a longitudinal proteomics study.
    PLoS One. 2017;12:e0181468.
    PubMed     Text format     Abstract available

  43. TSAI FJ, Chen SY, Liu YC, Liao HY, et al
    The comparison of CHCA solvent compositions for improving LC-MALDI performance and its application to study the impact of aflatoxin B1 on the liver proteome of diabetes mellitus type 1 mice.
    PLoS One. 2017;12:e0181423.
    PubMed     Text format     Abstract available

  44. MURPHY SM, Augustine BC, Ulrey WA, Guthrie JM, et al
    Consequences of severe habitat fragmentation on density, genetics, and spatial capture-recapture analysis of a small bear population.
    PLoS One. 2017;12:e0181849.
    PubMed     Text format     Abstract available

  45. TRIVEDI MS, Holger D, Bui AT, Craddock TJA, et al
    Short-term sleep deprivation leads to decreased systemic redox metabolites and altered epigenetic status.
    PLoS One. 2017;12:e0181978.
    PubMed     Text format     Abstract available

  46. WU YH, Cheng H, Xu L, Jin XB, et al
    Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater.
    PLoS One. 2017;12:e0179997.
    PubMed     Text format     Abstract available

  47. SUSEK K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, et al
    Epigenomic diversification within the genus Lupinus.
    PLoS One. 2017;12:e0179821.
    PubMed     Text format     Abstract available

  48. PANNACCIULLI FG, Maltagliati F, de Guttry C, Achituv Y, et al
    Phylogeography on the rocks: The contribution of current and historical factors in shaping the genetic structure of Chthamalus montagui (Crustacea, Cirripedia).
    PLoS One. 2017;12:e0178287.
    PubMed     Text format     Abstract available

  49. GAMEZ-POZO A, Trilla-Fuertes L, Prado-Vazquez G, Chiva C, et al
    Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics.
    PLoS One. 2017;12:e0178296.
    PubMed     Text format     Abstract available

  50. LUO S, Cao N, Tang Y, Gu W, et al
    Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis.
    PLoS One. 2017;12:e0178549.
    PubMed     Text format     Abstract available

  51. PEARSON LJ, Klaharn IY, Thongsawang B, Manuprasert W, et al
    Multiple extracellular vesicle types in peritoneal dialysis effluent are prominent and contain known biomarkers.
    PLoS One. 2017;12:e0178601.
    PubMed     Text format     Abstract available

  52. VOLDOIRE E, Brunet F, Naville M, Volff JN, et al
    Expansion by whole genome duplication and evolution of the sox gene family in teleost fish.
    PLoS One. 2017;12:e0180936.
    PubMed     Text format     Abstract available

  53. ADACHI S
    Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data.
    PLoS One. 2017;12:e0179180.
    PubMed     Text format     Abstract available

  54. RIVERA M, Ramos Y, Rodriguez-Valentin M, Lopez-Acevedo S, et al
    Targeting multiple pro-apoptotic signaling pathways with curcumin in prostate cancer cells.
    PLoS One. 2017;12:e0179587.
    PubMed     Text format     Abstract available

  55. KRUSE A, Fattah-Hosseini S, Saha S, Johnson R, et al
    Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.
    PLoS One. 2017;12:e0179531.
    PubMed     Text format     Abstract available

  56. BWOGI J, Jere KC, Karamagi C, Byarugaba DK, et al
    Whole genome analysis of selected human and animal rotaviruses identified in Uganda from 2012 to 2014 reveals complex genome reassortment events between human, bovine, caprine and porcine strains.
    PLoS One. 2017;12:e0178855.
    PubMed     Text format     Abstract available

  57. RIZAL G, Karki S, Thakur V, Wanchana S, et al
    A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio.
    PLoS One. 2017;12:e0179567.
    PubMed     Text format     Abstract available

  58. LISTL D, Poschlod P, Reisch C
    Phylogeography of a tough rock survivor in European dry grasslands.
    PLoS One. 2017;12:e0179961.
    PubMed     Text format     Abstract available


    Science

  59. LIN S, Yang X, Jia S, Weeks AM, et al
    Redox-based reagents for chemoselective methionine bioconjugation.
    Science. 2017;355:597-602.
    PubMed     Text format     Abstract available

  60. CHEN L, Liu P, Evans TC Jr, Ettwiller LM, et al
    DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification.
    Science. 2017;355:752-756.
    PubMed     Text format     Abstract available


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