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04.09.2017

3 Cancer
1 Cell
2 J Clin Oncol
2 Nature
45 PLoS One


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Single Articles


    Cancer

  1. BERRY AB
    Analytic inquiry: Validation and practical considerations.
    Cancer. 2017;125.
    PubMed     Text format     Abstract available

  2. HANNA MG, Pantanowitz L
    The role of informatics in patient-centered care and personalized medicine.
    Cancer. 2017;125.
    PubMed     Text format     Abstract available

  3. JOHNSON LM, Valdez JM, Quinn EA, Sykes AD, et al
    Integrating next-generation sequencing into pediatric oncology practice: An assessment of physician confidence and understanding of clinical genomics.
    Cancer. 2017;123:2352-2359.
    PubMed     Text format     Abstract available


    Cell

  4. ROE JS, Hwang CI, Somerville TDD, Milazzo JP, et al
    Enhancer Reprogramming Promotes Pancreatic Cancer Metastasis.
    Cell. 2017;170:875-888.
    PubMed     Text format     Abstract available


    J Clin Oncol

  5. KURIAN AW, Li Y, Hamilton AS, Ward KC, et al
    Gaps in Incorporating Germline Genetic Testing Into Treatment Decision-Making for Early-Stage Breast Cancer.
    J Clin Oncol. 2017 Apr 12:JCO2016716480. doi: 10.1200/JCO.2016.71.6480.
    PubMed     Text format     Abstract available

  6. SAMIMI G, Bernardini MQ, Brody LC, Caga-Anan CF, et al
    Traceback: A Proposed Framework to Increase Identification and Genetic Counseling of BRCA1 and BRCA2 Mutation Carriers Through Family-Based Outreach.
    J Clin Oncol. 2017;35:2329-2337.
    PubMed     Text format     Abstract available


    Nature

  7. MASCHER M, Gundlach H, Himmelbach A, Beier S, et al
    A chromosome conformation capture ordered sequence of the barley genome.
    Nature. 2017;544:427-433.
    PubMed     Text format     Abstract available

  8. SMAGLIK P
    The genetic microscope.
    Nature. 2017;545:S25-S27.
    PubMed     Text format    


    PLoS One

  9. FOSCHI C, Laghi L, Parolin C, Giordani B, et al
    Novel approaches for the taxonomic and metabolic characterization of lactobacilli: Integration of 16S rRNA gene sequencing with MALDI-TOF MS and 1H-NMR.
    PLoS One. 2017;12:e0172483.
    PubMed     Text format     Abstract available

  10. PRICE A, Garhyan J, Gibas C
    The impact of RNA secondary structure on read start locations on the Illumina sequencing platform.
    PLoS One. 2017;12:e0173023.
    PubMed     Text format     Abstract available

  11. BENEVENUTO RF, Agapito-Tenfen SZ, Vilperte V, Wikmark OG, et al
    Molecular responses of genetically modified maize to abiotic stresses as determined through proteomic and metabolomic analyses.
    PLoS One. 2017;12:e0173069.
    PubMed     Text format     Abstract available

  12. BRYANT AE, Aldape MJ, Bayer CR, Katahira EJ, et al
    Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.
    PLoS One. 2017;12:e0172486.
    PubMed     Text format     Abstract available

  13. BATISTA ME, Silva DD, Sales MA, Sa AA, et al
    New data on the stem and leaf anatomy of two conifers from the Lower Cretaceous of the Araripe Basin, northeastern Brazil, and their taxonomic and paleoecological implications.
    PLoS One. 2017;12:e0173090.
    PubMed     Text format     Abstract available

  14. NAKAOKA T, Iga M, Yamada T, Koujima I, et al
    Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.
    PLoS One. 2017;12:e0172951.
    PubMed     Text format     Abstract available

  15. GEBHARDT MJ, Jacobson RK, Shuman HA
    Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria.
    PLoS One. 2017;12:e0173116.
    PubMed     Text format     Abstract available

  16. HTUN NM, Magliano DJ, Zhang ZY, Lyons J, et al
    Prediction of acute coronary syndromes by urinary proteome analysis.
    PLoS One. 2017;12:e0172036.
    PubMed     Text format     Abstract available

  17. PERUMAL N, Manicam C, Steinicke M, Funke S, et al
    Characterization of the human aqueous humour proteome: A comparison of the genders.
    PLoS One. 2017;12:e0172481.
    PubMed     Text format     Abstract available

  18. VARGAS-CARO C, Bustamante C, Bennett MB, Ovenden JR, et al
    Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean.
    PLoS One. 2017;12:e0172255.
    PubMed     Text format     Abstract available

  19. SERGEANT K, Printz B, Gutsch A, Behr M, et al
    Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases.
    PLoS One. 2017;12:e0171990.
    PubMed     Text format     Abstract available

  20. WANG R, Cui Y, Xu Y, Irudayaraj J, et al
    Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-beta-carboline (TaClo) in vitro.
    PLoS One. 2017;12:e0172243.
    PubMed     Text format     Abstract available

  21. HENDERSON MC, Hollingsworth AB, Gordon K, Silver M, et al
    Integration of Serum Protein Biomarker and Tumor Associated Autoantibody Expression Data Increases the Ability of a Blood-Based Proteomic Assay to Identify Breast Cancer.
    PLoS One. 2016;11:e0157692.
    PubMed     Text format     Abstract available

  22. SAMIMI-RAD K, Rahimnia R, Sadeghi M, Malekpour SA, et al
    Epidemic History of Hepatitis C Virus among Patients with Inherited Bleeding Disorders in Iran.
    PLoS One. 2016;11:e0162492.
    PubMed     Text format     Abstract available

  23. BEISSER D, Kaschani F, Graupner N, Grossmann L, et al
    Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
    PLoS One. 2017;12:e0168183.
    PubMed     Text format     Abstract available

  24. ZACHER B, Michel M, Schwalb B, Cramer P, et al
    Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
    PLoS One. 2017;12:e0169249.
    PubMed     Text format     Abstract available

  25. HAMILTON SL, Logan CA, Fennie HW, Sogard SM, et al
    Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics.
    PLoS One. 2017;12:e0169670.
    PubMed     Text format     Abstract available

  26. LI YH, Wang HP, Yao H, O'Bryant P, et al
    De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens.
    PLoS One. 2017;12:e0171187.
    PubMed     Text format     Abstract available

  27. SAKAKI M, Ebihara Y, Okamura K, Nakabayashi K, et al
    Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses.
    PLoS One. 2017;12:e0171431.
    PubMed     Text format     Abstract available

  28. PARK YJ, Koh J, Kwon JT, Park YS, et al
    Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes.
    PLoS One. 2017;12:e0169677.
    PubMed     Text format     Abstract available

  29. KAMFWA K, Zhao D, Kelly JD, Cichy KA, et al
    Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation.
    PLoS One. 2017;12:e0172141.
    PubMed     Text format     Abstract available

  30. CHENG J, Romantsov T, Engel K, Doxey AC, et al
    Functional metagenomics reveals novel beta-galactosidases not predictable from gene sequences.
    PLoS One. 2017;12:e0172545.
    PubMed     Text format     Abstract available

  31. WANG Z, Fan G, Dong Y, Zhai X, et al
    Implications of polyploidy events on the phenotype, microstructure, and proteome of Paulownia australis.
    PLoS One. 2017;12:e0172633.
    PubMed     Text format     Abstract available

  32. REZNICK DN, Furness AI, Meredith RW, Springer MS, et al
    The origin and biogeographic diversification of fishes in the family Poeciliidae.
    PLoS One. 2017;12:e0172546.
    PubMed     Text format     Abstract available

  33. PELLON A, Ramirez-Garcia A, Buldain I, Antoran A, et al
    Molecular and cellular responses of the pathogenic fungus Lomentospora prolificans to the antifungal drug voriconazole.
    PLoS One. 2017;12:e0174885.
    PubMed     Text format     Abstract available

  34. GUINOISEAU T, Moreau A, Hohnadel G, Ngo-Giang-Huong N, et al
    Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.
    PLoS One. 2017;12:e0174852.
    PubMed     Text format     Abstract available

  35. SUN Y, Guo W, Wang F, Zhan C, et al
    Transcriptome analysis of Corynebacterium glutamicum in the process of recombinant protein expression in bioreactors.
    PLoS One. 2017;12:e0174824.
    PubMed     Text format     Abstract available

  36. EDWARDS RD, Crisp MD, Cook DH, Cook LG, et al
    Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics.
    PLoS One. 2017;12:e0174812.
    PubMed     Text format     Abstract available

  37. RUTKOWSKI R, Zawadzka D, Suchecka E, Merta D, et al
    Conservation genetics of the capercaillie in Poland - Delineation of conservation units.
    PLoS One. 2017;12:e0174901.
    PubMed     Text format     Abstract available

  38. LLUVERAS-TENORIO A, Vinciguerra R, Galano E, Blaensdorf C, et al
    GC/MS and proteomics to unravel the painting history of the lost Giant Buddhas of Bamiyan (Afghanistan).
    PLoS One. 2017;12:e0172990.
    PubMed     Text format     Abstract available

  39. DHARMAYANTHI AB, Terai Y, Sulandari S, Zein MS, et al
    The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.
    PLoS One. 2017;12:e0173147.
    PubMed     Text format     Abstract available

  40. ANEL-LOPEZ L, Ortega-Ferrusola C, Martinez-Rodriguez C, Alvarez M, et al
    Analysis of seminal plasma from brown bear (Ursus arctos) during the breeding season: Its relationship with testosterone levels.
    PLoS One. 2017;12:e0181776.
    PubMed     Text format     Abstract available

  41. KUMAR S, Subbarao BL, Kumari R, Hallan V, et al
    Molecular characterization of a novel cryptic virus infecting pigeonpea plants.
    PLoS One. 2017;12:e0181829.
    PubMed     Text format     Abstract available

  42. LI Y, Urban A, Midura D, Simon HG, et al
    Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-kappaB in epicardial EMT.
    PLoS One. 2017;12:e0174563.
    PubMed     Text format     Abstract available

  43. LI Y, Morrow J, Raby B, Tantisira K, et al
    Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data.
    PLoS One. 2017;12:e0174602.
    PubMed     Text format     Abstract available

  44. PAGES-MONTEIRO L, Marti R, Commun C, Alliot N, et al
    Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa.
    PLoS One. 2017;12:e0173022.
    PubMed     Text format     Abstract available

  45. WOOD LE, De Grave S, Daniels SR
    Phylogeographic patterning among two codistributed shrimp species (Crustacea: Decapoda: Palaemonidae) reveals high levels of connectivity across biogeographic regions along the South African coast.
    PLoS One. 2017;12:e0173356.
    PubMed     Text format     Abstract available

  46. BYRUM SD, Burdine MS, Orr L, Mackintosh SG, et al
    Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection.
    PLoS One. 2017;12:e0174771.
    PubMed     Text format     Abstract available

  47. MARROTTE RR, Bowman J
    The relationship between least-cost and resistance distance.
    PLoS One. 2017;12:e0174212.
    PubMed     Text format     Abstract available

  48. ZOU B, Li J, Zhou Q, Quan ZX, et al
    MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
    PLoS One. 2017;12:e0174609.
    PubMed     Text format     Abstract available

  49. WARD LJ, Ljunggren SA, Karlsson H, Li W, et al
    Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages.
    PLoS One. 2017;12:e0174475.
    PubMed     Text format     Abstract available

  50. ARNAU G, Bhattacharjee R, Mn S, Chair H, et al
    Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.
    PLoS One. 2017;12:e0174150.
    PubMed     Text format     Abstract available

  51. MEINERT C, Brandt U, Heine V, Beyert J, et al
    Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.
    PLoS One. 2017;12:e0174256.
    PubMed     Text format     Abstract available

  52. DECAP D, Reumers J, Herzeel C, Costanza P, et al
    Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.
    PLoS One. 2017;12:e0174575.
    PubMed     Text format     Abstract available

  53. XI Y, Jiao W, Cao J, Jiang W, et al
    Effects of chlorogenic acid on capacity of free radicals scavenging and proteomic changes in postharvest fruit of nectarine.
    PLoS One. 2017;12:e0182494.
    PubMed     Text format     Abstract available


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