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Articles published in Proc Natl Acad Sci U S A

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    March 2010
  1. ABRAMS CF , Vanden-Eijnden E
    Large-scale conformational sampling of proteins using temperature-accelerated molecular dynamics.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


  2. GROOM HC , Yap MW, Galao RP, Neil SJ, et al
    Susceptibility of xenotropic murine leukemia virus-related virus (XMRV) to retroviral restriction factors.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


    February 2010
  3. NCHINDA G , Amadu D, Trumpfheller C, Mizenina O, et al
    Dendritic cell targeted HIV gag protein vaccine provides help to a DNA vaccine including mobilization of protective CD8+ T cells.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


  4. CRAIGIE R
    Targeting HIV-1 DNA integration by swapping tethers.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles   


  5. FERRIS AL , Wu X, Hughes CM, Stewart C, et al
    Lens epithelium-derived growth factor fusion proteins redirect HIV-1 DNA integration.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


    January 2010
  6. WOLF MC , Freiberg AN, Zhang T, Akyol-Ataman Z, et al
    A broad-spectrum antiviral targeting entry of enveloped viruses.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


  7. MITREA DM , Parsons LS, Loh SN
    Engineering an artificial zymogen by alternate frame protein folding.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


  8. CARVALHO CM , Zhang F, Lupski JR
    Evolution in Health and Medicine Sackler Colloquium: Genomic disorders: A window into human gene and genome evolution.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


  9. ZHANG J , Hou T, Wang W, Liu JS, et al
    Detecting and understanding combinatorial mutation patterns responsible for HIV drug resistance.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


  10. SCHERER EM , Leaman DP, Zwick MB, McMichael AJ, et al
    Aromatic residues at the edge of the antibody combining site facilitate viral glycoprotein recognition through membrane interactions.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


  11. CHUKKAPALLI V , Oh SJ, Ono A
    Opposing mechanisms involving RNA and lipids regulate HIV-1 Gag membrane binding through the highly basic region of the matrix domain.
    Proc Natl Acad Sci U S A. 2010.
    PubMed     Text format     Related articles    Abstract available


    December 2009
  12. CANAAN A , Haviv I, Urban AE, Schulz VP, et al
    EBNA1 regulates cellular gene expression by binding cellular promoters.
    Proc Natl Acad Sci U S A. 2009;106:22421-6.
    PubMed     Text format     Related articles    Abstract available


  13. PANCERA M , Majeed S, Ban YE, Chen L, et al
    Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  14. NITTA T , Kuznetsov Y, McPherson A, Fan H, et al
    Murine leukemia virus glycosylated Gag (gPr80gag) facilitates interferon-sensitive virus release through lipid rafts.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  15. VERKOCZY L , Diaz M, Holl TM, Ouyang YB, et al
    Autoreactivity in an HIV-1 broadly reactive neutralizing antibody variable region heavy chain induces immunologic tolerance.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    November 2009
  16. AZEVEDO C , Burton A, Ruiz-Mateos E, Marsh M, et al
    Inositol pyrophosphate mediated pyrophosphorylation of AP3B1 regulates HIV-1 Gag release.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  17. CICALA C , Martinelli E, McNally JP, Goode DJ, et al
    The integrin {alpha}4{beta}7 forms a complex with cell-surface CD4 and defines a T-cell subset that is highly susceptible to infection by HIV-1.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  18. BECK-ENGESER GB , Eilat D, Harrer T, Jack HM, et al
    Early onset of autoimmune disease by the retroviral integrase inhibitor raltegravir.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  19. DAI B , Yang L, Yang H, Hu B, et al
    HIV-1 Gag-specific immunity induced by a lentivector-based vaccine directed to dendritic cells.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  20. BENLAHRECH A , Harris J, Meiser A, Papagatsias T, et al
    Adenovirus vector vaccination induces expansion of memory CD4 T cells with a mucosal homing phenotype that are readily susceptible to HIV-1.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  21. ALAM SM , Morelli M, Dennison SM, Liao HX, et al
    Role of HIV membrane in neutralization by two broadly neutralizing antibodies.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  22. IWATANI Y , Chan DS, Liu L, Yoshii H, et al
    HIV-1 Vif-mediated ubiquitination/degradation of APOBEC3G involves four critical lysine residues in its C-terminal domain.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    October 2009
  23. GUPTA RK , Mlcochova P, Pelchen-Matthews A, Petit SJ, et al
    Simian immunodeficiency virus envelope glycoprotein counteracts tetherin/BST-2/CD317 by intracellular sequestration.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  24. JOUVENET N , Simon SM, Bieniasz PD
    Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  25. KANTOR B , Ma H, Webster-Cyriaque J, Monahan PE, et al
    Epigenetic activation of unintegrated HIV-1 genomes by gut-associated short chain fatty acids and its implications for HIV infection.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  26. AGATE RJ , Scott BB, Haripal B, Lois C, et al
    Transgenic songbirds offer an opportunity to develop a genetic model for vocal learning.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    September 2009
  27. FONTENOT D , He H, Hanabuchi S, Nehete PN, et al
    TSLP production by epithelial cells exposed to immunodeficiency virus triggers DC-mediated mucosal infection of CD4+ T cells.
    Proc Natl Acad Sci U S A. 2009;106:16776-81.
    PubMed     Text format     Related articles    Abstract available


    August 2009
  28. TANAKA H , Chiba H, Inokoshi J, Kuno A, et al
    Mechanism by which the lectin actinohivin blocks HIV infection of target cells.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  29. BAKAN A , Bahar I
    The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding.
    Proc Natl Acad Sci U S A. 2009;106:14349-54.
    PubMed     Text format     Related articles    Abstract available


  30. LESTER RT , Jaoko W, Plummer FA, Kaul R, et al
    Sex, microbial translocation, and the African HIV epidemic.
    Proc Natl Acad Sci U S A. 2009;106:E89.
    PubMed     Text format     Related articles   


  31. QIANG W , Sun Y, Weliky DP
    A strong correlation between fusogenicity and membrane insertion depth of the HIV fusion peptide.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  32. HORNE WS , Johnson LM, Ketas TJ, Klasse PJ, et al
    Structural and biological mimicry of protein surface recognition by {alpha}/{beta}-peptide foldamers.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  33. HAEDICKE J , Brown C, Naghavi MH
    The brain-specific factor FEZ1 is a determinant of neuronal susceptibility to HIV-1 infection.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    July 2009
  34. WANG R , Kozhaya L, Mercer F, Khaitan A, et al
    Expression of GARP selectively identifies activated human FOXP3+ regulatory T cells.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  35. CUI J , Smith T, Robbins PW, Samuelson J, et al
    Darwinian selection for sites of Asn-linked glycosylation in phylogenetically disparate eukaryotes and viruses.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  36. CHEN J , Nikolaitchik O, Singh J, Wright A, et al
    High efficiency of HIV-1 genomic RNA packaging and heterozygote formation revealed by single virion analysis.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  37. DAVIDSON A , Leeper TC, Athanassiou Z, Patora-Komisarska K, et al
    Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  38. STAUCH B , Hofmann H, Perkovic M, Weisel M, et al
    Model structure of APOBEC3C reveals a binding pocket modulating ribonucleic acid interaction required for encapsidation.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    June 2009
  39. MENON S , Rosenberg K, Graham SA, Ward EM, et al
    Binding-site geometry and flexibility in DC-SIGN demonstrated with surface force measurements.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  40. BRIGGS JA , Riches JD, Glass B, Bartonova V, et al
    Structure and assembly of immature HIV.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  41. SACHA JB , Giraldo-Vela JP, Buechler MB, Martins MA, et al
    Gag- and Nef-specific CD4+ T cells recognize and inhibit SIV replication in infected macrophages early after infection.
    Proc Natl Acad Sci U S A. 2009;106:9791-6.
    PubMed     Text format     Related articles    Abstract available


    May 2009
  42. MA Q , Cavallin LE, Yan B, Zhu S, et al
    Antitumorigenesis of antioxidants in a transgenic Rac1 model of Kaposi's sarcoma.
    Proc Natl Acad Sci U S A. 2009;106:8683-8.
    PubMed     Text format     Related articles    Abstract available


  43. DINOSO JB , Kim SY, Wiegand AM, Palmer SE, et al
    Treatment intensification does not reduce residual HIV-1 viremia in patients on highly active antiretroviral therapy.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  44. SONG L , Sun ZY, Coleman KE, Zwick MB, et al
    Broadly neutralizing anti-HIV-1 antibodies disrupt a hinge-related function of gp41 at the membrane interface.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  45. HAUBER I , Hohenberg H, Holstermann B, Hunstein W, et al
    The main green tea polyphenol epigallocatechin-3-gallate counteracts semen-mediated enhancement of HIV infection.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  46. ALIAN A , Griner SL, Chiang V, Tsiang M, et al
    Catalytically-active complex of HIV-1 integrase with a viral DNA substrate binds anti-integrase drugs.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    April 2009
  47. NISHIMURA Y , Sadjadpour R, Mattapallil JJ, Igarashi T, et al
    High frequencies of resting CD4+ T cells containing integrated viral DNA are found in rhesus macaques during acute lentivirus infections.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  48. PENSIEROSO S , Cagigi A, Palma P, Nilsson A, et al
    Timing of HAART defines the integrity of memory B cells and the longevity of humoral responses in HIV-1 vertically-infected children.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  49. KLEIN JS , Gnanapragasam PN, Galimidi RP, Foglesong CP, et al
    Examination of the contributions of size and avidity to the neutralization mechanisms of the anti-HIV antibodies b12 and 4E10.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  50. ZEITLIN L , Pauly M, Whaley KJ
    Second-generation HIV microbicides: Continued development of griffithsin.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles   


  51. REDD AD , Dabitao D, Bream JH, Charvat B, et al
    Microbial translocation, the innate cytokine response, and HIV-1 disease progression in Africa.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    March 2009
  52. YANG HC , Shen L, Siliciano RF, Pomerantz JL, et al
    Isolation of a cellular factor that can reactivate latent HIV-1 without T cell activation.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  53. O'KEEFE BR , Vojdani F, Buffa V, Shattock RJ, et al
    Scaleable manufacture of HIV-1 entry inhibitor griffithsin and validation of its safety and efficacy as a topical microbicide component.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  54. INGALLINELLA P , Bianchi E, Ladwa NA, Wang YJ, et al
    Addition of a cholesterol group to an HIV-1 peptide fusion inhibitor dramatically increases its antiviral potency.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  55. ANASTASSOPOULOU CG , Ketas TJ, Klasse PJ, Moore JP, et al
    Resistance to CCR5 inhibitors caused by sequence changes in the fusion peptide of HIV-1 gp41.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  56. ADACHI M , Ohhara T, Kurihara K, Tamada T, et al
    Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  57. HATZIIOANNOU T , Ambrose Z, Chung NP, Piatak M Jr, et al
    A macaque model of HIV-1 infection.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    February 2009
  58. VALENTE ST , Gilmartin GM, Mott C, Falkard B, et al
    Inaugural Article: Inhibition of HIV-1 replication by eIF3f.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  59. GUAN Y , Sajadi MM, Kamin-Lewis R, Fouts TR, et al
    Discordant memory B cell and circulating anti-Env antibody responses in HIV-1 infection.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  60. D'ORSO I , Frankel AD
    Tat acetylation modulates assembly of a viral-host RNA-protein transcription complex.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  61. MIYAGI E , Andrew AJ, Kao S, Strebel K, et al
    Vpu enhances HIV-1 virus release in the absence of Bst-2 cell surface down-modulation and intracellular depletion.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


    January 2009
  62. KALETSKY RL , Francica JR, Agrawal-Gamse C, Bates P, et al
    Tetherin-mediated restriction of filovirus budding is antagonized by the Ebola glycoprotein.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  63. MARINEC PS , Chen L, Barr KJ, Mutz MW, et al
    FK506-binding protein (FKBP) partitions a modified HIV protease inhibitor into blood cells and prolongs its lifetime in vivo.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  64. POND SJ , Ridgeway WK, Robertson R, Wang J, et al
    HIV-1 Rev protein assembles viral RNA one molecule at a time.
    Proc Natl Acad Sci U S A. 2009.
    PubMed     Text format     Related articles    Abstract available


  65. ZHANG L , Lee SY, Beznoussenko GV, Peters PJ, et al
    A role for the host coatomer and KDEL receptor in early vaccinia biogenesis.
    Proc Natl Acad Sci U S A. 2009;106:163-8.
    PubMed     Text format     Related articles    Abstract available


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