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Daily Top 10 COVID-19 papers


  Drug Resistance

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3 Am J Trop Med Hyg
14 Antimicrob Agents Chemother
1 Clin Infect Dis
1 Infect Control Hosp Epidemiol
2 J Bacteriol
3 J Clin Microbiol
1 J Infect Chemother
1 J Infect Dis
3 N Engl J Med
12 PLoS One
7 Proc Natl Acad Sci U S A

  Retrieve available abstracts of this week’s articles:
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Single Articles

    Am J Trop Med Hyg

  1. TATARA MB, Perdigao J, Viveiros M, Kritski A, et al
    Genetic Diversity and Molecular Epidemiology of Mycobacterium tuberculosis in Roraima State, Brazil.
    Am J Trop Med Hyg. 2019 Aug 5. doi: 10.4269/ajtmh.19-0324.
    PubMed         Abstract available

  2. GARCIA C, Hinostroza N, Astocondor L, Ochoa T, et al
    Characterization of ESBL-Producing Salmonella enterica Serovar Infantis Infection in Humans, Lima, Peru.
    Am J Trop Med Hyg. 2019;101:746-748.
    PubMed         Abstract available

  3. JOSHI RD, Zervos M, Kaljee LM, Shrestha B, et al
    Evaluation of a Hospital-Based Post-Prescription Review and Feedback Pilot in Kathmandu, Nepal.
    Am J Trop Med Hyg. 2019;101:923-928.
    PubMed         Abstract available

    Antimicrob Agents Chemother

  4. ACOSTA RK, Willkom M, Martin R, Chang S, et al
    Resistance Analysis of Bictegravir/Emtricitabine/Tenofovir Alafenamide in HIV-1 Treatment-Naive Patients Through 48 Weeks.
    Antimicrob Agents Chemother. 2019 Feb 25. pii: AAC.02533.
    PubMed         Abstract available

  5. LI J, Hao H, Dai M, Zhang H, et al
    Resistance and Virulence Mechanisms of Escherichia coli Selected by Enrofloxacin in Chicken.
    Antimicrob Agents Chemother. 2019;63.
    PubMed         Abstract available

  6. GINGRAS H, Patron K, Bhattacharya A, Leprohon P, et al
    Gain and loss of function screens coupled to next generation sequencing for antibiotic mode of action and resistance studies in Streptococcus pneumoniae.
    Antimicrob Agents Chemother. 2019 Feb 19. pii: AAC.02381.
    PubMed         Abstract available

  7. DEMUYSER L, Van Dyck K, Timmermans B, Van Dijck P, et al
    Inhibition of Vesicular Transport Influences Fungal Susceptibility to Fluconazole.
    Antimicrob Agents Chemother. 2019;63.
    PubMed         Abstract available

  8. YANG T, Pan L, Wu N, Wang L, et al
    Antimicrobial resistance in clinical Ureaplasma spp. and Mycoplasma hominis and structural mechanisms underlying the quinolone resistance.
    Antimicrob Agents Chemother. 2020 Mar 30. pii: AAC.02560.
    PubMed         Abstract available

  9. MASI M, Pinet E, Pages JM
    Complex response of the CpxAR two-component system to beta-lactams on antibiotic resistance and envelop homeostasis in Enterobacteriaceae.
    Antimicrob Agents Chemother. 2020 Mar 30. pii: AAC.00291.
    PubMed         Abstract available

  10. SMITH RA, Raugi DN, Wu VH, Zavala CG, et al
    Comparison of the Antiviral Activity of Bictegravir Against HIV-1 and HIV-2 Isolates and Integrase Inhibitor-Resistant HIV-2 Mutants.
    Antimicrob Agents Chemother. 2019 Feb 25. pii: AAC.00014.
    PubMed         Abstract available

  11. NAKANO S, Fujisawa T, Ito Y, Chang B, et al
    Whole-genome sequencing analysis of multidrug-resistant serotype 15A Streptococcus pneumoniae in Japan and the emergence of a highly resistant serotype 15A-ST9084 clone.
    Antimicrob Agents Chemother. 2019 Feb 25. pii: AAC.02579.
    PubMed         Abstract available

  12. NISHIMOTO AT, Zhang Q, Hazlett B, Morschhauser J, et al
    The contribution of clinically-derived mutations in the gene encoding the zinc cluster transcription factor Mrr2 to fluconazole antifungal resistance and CDR1 expression in Candida albicans.
    Antimicrob Agents Chemother. 2019 Mar 4. pii: AAC.00078.
    PubMed         Abstract available

  13. ROSENBLATT J, Vargas-Cruz N, Reitzel RA, Raad II, et al
    Assessment of the Potential for Inducing Resistance in Multidrug-Resistant Organisms from Exposure to Minocycline, Rifampin, and Chlorhexidine Used To Treat Intravascular Devices.
    Antimicrob Agents Chemother. 2019;63.
    PubMed         Abstract available

  14. BUTTS A, Reitler P, Nishimoto AT, DeJarnette C, et al
    A systematic screen reveals a diverse collection of medications induce antifungal resistance in Candida species.
    Antimicrob Agents Chemother. 2019 Mar 11. pii: AAC.00054.
    PubMed         Abstract available

  15. FLAMM RK, Rhomberg PR, Lindley JM, Sweeney K, et al
    Evaluation of the Bactericidal Activity of Fosfomycin in Combination with Selected Antimicrobial Comparison Agents Tested against Gram-Negative Bacterial Strains by Using Time-Kill Curves.
    Antimicrob Agents Chemother. 2019;63.
    PubMed         Abstract available

  16. KO KKK, Chio MTW, Goh SS, Tan AL, et al
    First Case of Ceftriaxone-Resistant Multidrug-Resistant Neisseria gonorrhoeae in Singapore.
    Antimicrob Agents Chemother. 2019;63.

  17. LARKIN EL, Long L, Isham N, Borroto-Esoda K, et al
    A Novel 1,3-Beta-d-Glucan Inhibitor, Ibrexafungerp (Formerly SCY-078), Shows Potent Activity in the Lower pH Environment of Vulvovaginitis.
    Antimicrob Agents Chemother. 2019;63.
    PubMed         Abstract available

    Clin Infect Dis

  18. WANG J, Foxman B, Pirani A, Lapp Z, et al
    Application of combined genomic and transfer analyses to identify factors mediating regional spread of antibiotic resistant bacterial lineages.
    Clin Infect Dis. 2020 Apr 2. pii: 5814952. doi: 10.1093.
    PubMed         Abstract available

    Infect Control Hosp Epidemiol

  19. LIU Y, Zhang X, Cai L, Zong Z, et al
    Enhanced survival of ST-11 carbapenem-resistant Klebsiella pneumoniae in the intensive care unit.
    Infect Control Hosp Epidemiol. 2020 Mar 27:1-2. doi: 10.1017/ice.2020.

    J Bacteriol

  20. HIGGINS DA, Gladden JM, Kimbrel JA, Simmons BA, et al
    Guanidine Riboswitch-Regulated Efflux Transporters Protect Bacteria against Ionic Liquid Toxicity.
    J Bacteriol. 2019;201.
    PubMed         Abstract available

  21. LATINO L, Patin D, Cherier D, Touze T, et al
    Impact of FiuA Outer Membrane Receptor Polymorphism on the Resistance of Pseudomonas aeruginosa toward Peptidoglycan Lipid II-Targeting PaeM Pyocins.
    J Bacteriol. 2019;201.
    PubMed         Abstract available

    J Clin Microbiol

  22. OPOTA O, Zakham F, Mazza-Stalder J, Nicod L, et al
    Added-value of Xpert MTB/RIF Ultra for the diagnosis of pulmonary tuberculosis in a low prevalence setting.
    J Clin Microbiol. 2018 Dec 12. pii: JCM.01717-18. doi: 10.1128/JCM.01717.
    PubMed         Abstract available

  23. YAN Q, Wi YM, Thoendel MJ, Raval YS, et al
    Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.
    J Clin Microbiol. 2019;57.
    PubMed         Abstract available

  24. NGUYEN M, Long SW, McDermott PF, Olsen RJ, et al
    Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella.
    J Clin Microbiol. 2019;57.
    PubMed         Abstract available

    J Infect Chemother

  25. YAMABA Y, Ito Y, Suzuki K, Kikuchi T, et al
    Moxifloxacin resistance and genotyping of Mycobacterium avium and Mycobacterium intracellulare isolates in Japan.
    J Infect Chemother. 2019;25:995-1000.
    PubMed         Abstract available

    J Infect Dis

  26. LI W, Tapiainen T, Brinkac L, Lorenzi HA, et al
    Vertical transmission of gut microbiome and antimicrobial resistance genes in infants exposed to antibiotics at birth.
    J Infect Dis. 2020 Apr 2. pii: 5814973. doi: 10.1093.
    PubMed         Abstract available

    N Engl J Med

  27. KOZAL M, Aberg J, Pialoux G, Cahn P, et al
    Fostemsavir in Adults with Multidrug-Resistant HIV-1 Infection.
    N Engl J Med. 2020;382:1232-1243.
    PubMed         Abstract available

  28. MELLON G, Turbett SE, Worby C, Oliver E, et al
    Acquisition of Antibiotic-Resistant Bacteria by U.S. International Travelers.
    N Engl J Med. 2020;382:1372-1374.

  29. FANG FC, Schooley RT
    Antimicrobial Resistance - The Glass Is Half Full.
    N Engl J Med. 2020;382:1363-1365.

    PLoS One

  30. MO SS, Urdahl AM, Nesse LL, Slettemeas JS, et al
    Occurrence of and risk factors for extended-spectrum cephalosporin-resistant Enterobacteriaceae determined by sampling of all Norwegian broiler flocks during a six month period.
    PLoS One. 2019;14:e0223074.
    PubMed         Abstract available

  31. FINK DL, Collins S, Barret R, Pollara G, et al
    Shortening duration of ertapenem in outpatient parenteral antimicrobial therapy for complicated urinary tract infections: A retrospective study.
    PLoS One. 2019;14:e0223130.
    PubMed         Abstract available

  32. VERROKEN A, Despas N, Rodriguez-Villalobos H, Laterre PF, et al
    The impact of a rapid molecular identification test on positive blood cultures from critically ill with bacteremia: A pre-post intervention study.
    PLoS One. 2019;14:e0223122.
    PubMed         Abstract available

  33. NARANG A, Garima K, Porwal S, Bhandekar A, et al
    Potential impact of efflux pump genes in mediating rifampicin resistance in clinical isolates of Mycobacterium tuberculosis from India.
    PLoS One. 2019;14:e0223163.
    PubMed         Abstract available

  34. SHASKOLSKIY B, Dementieva E, Kandinov I, Filippova M, et al
    Resistance of Neisseria gonorrhoeae isolates to beta-lactam antibiotics (benzylpenicillin and ceftriaxone) in Russia, 2015-2017.
    PLoS One. 2019;14:e0220339.
    PubMed         Abstract available

  35. MASEDA E, Ramirez S, Picatto P, Pelaez-Pelaez E, et al
    Critically ill patients with community-onset intraabdominal infections: Influence of healthcare exposure on resistance rates and mortality.
    PLoS One. 2019;14:e0223092.
    PubMed         Abstract available

  36. BHATNAGAR K, Wong A
    The mutational landscape of quinolone resistance in Escherichia coli.
    PLoS One. 2019;14:e0224650.
    PubMed         Abstract available

  37. GRASS JE, Kim S, Huang JY, Morrison SM, et al
    Quinolone nonsusceptibility among enteric pathogens isolated from international travelers - Foodborne Diseases Active Surveillance Network (FoodNet) and National Antimicrobial Monitoring System (NARMS), 10 United States sites, 2004 - 2014.
    PLoS One. 2019;14:e0225800.
    PubMed         Abstract available

  38. LAZDINS A, Maurya AP, Miller CE, Kamruzzaman M, et al
    Potentiation of curing by a broad-host-range self-transmissible vector for displacing resistance plasmids to tackle AMR.
    PLoS One. 2020;15:e0225202.
    PubMed         Abstract available

  39. BALL T, Monte D, Aidara-Kane A, Matheu J, et al
    International lineages of Salmonella enterica serovars isolated from chicken farms, Wakiso District, Uganda.
    PLoS One. 2020;15:e0220484.
    PubMed         Abstract available

  40. HUHN GD, Ramgopal M, Jain MK, Hinestrosa F, et al
    HIV/HCV therapy with ledipasvir/sofosbuvir after randomized switch to emtricitabine-tenofovir alafenamide-based single-tablet regimens.
    PLoS One. 2020;15:e0224875.
    PubMed         Abstract available

  41. ZHANG M, Wang C, O'Connor A
    A hierarchical Bayesian latent class mixture model with censorship for detection of linear temporal changes in antibiotic resistance.
    PLoS One. 2020;15:e0220427.
    PubMed         Abstract available

    Proc Natl Acad Sci U S A

  42. MISHRA B, Lakshmaiah Narayana J, Lushnikova T, Wang X, et al
    Low cationicity is important for systemic in vivo efficacy of database-derived peptides against drug-resistant Gram-positive pathogens.
    Proc Natl Acad Sci U S A. 2019;116:13517-13522.
    PubMed         Abstract available

  43. LEVIN-REISMAN I, Brauner A, Ronin I, Balaban NQ, et al
    Epistasis between antibiotic tolerance, persistence, and resistance mutations.
    Proc Natl Acad Sci U S A. 2019;116:14734-14739.
    PubMed         Abstract available

  44. DI RUSCIO F, Guzzetta G, Bjornholt JV, Leegaard TM, et al
    Quantifying the transmission dynamics of MRSA in the community and healthcare settings in a low-prevalence country.
    Proc Natl Acad Sci U S A. 2019;116:14599-14605.
    PubMed         Abstract available

  45. TCHESNOKOVA V, Radey M, Chattopadhyay S, Larson L, et al
    Pandemic fluoroquinolone resistant Escherichia coli clone ST1193 emerged via simultaneous homologous recombinations in 11 gene loci.
    Proc Natl Acad Sci U S A. 2019;116:14740-14748.
    PubMed         Abstract available

  46. TEPEKULE B, Abel Zur Wiesch P, Kouyos RD, Bonhoeffer S, et al
    Quantifying the impact of treatment history on plasmid-mediated resistance evolution in human gut microbiota.
    Proc Natl Acad Sci U S A. 2019;116:23106-23116.
    PubMed         Abstract available

  47. PATRO SC, Brandt LD, Bale MJ, Halvas EK, et al
    Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors.
    Proc Natl Acad Sci U S A. 2019 Nov 27. pii: 1910334116.
    PubMed         Abstract available

  48. FLENTIE K, Harrison GA, Tukenmez H, Livny J, et al
    Chemical disarming of isoniazid resistance in Mycobacterium tuberculosis.
    Proc Natl Acad Sci U S A. 2019 May 6. pii: 1818009116.
    PubMed         Abstract available

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