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Articles published in J Clin Microbiol

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Single Articles


    April 2020
  1. FERREIRA I, Beisken S, Lueftinger L, Weinmaier T, et al
    Species Identification and Antibiotic Resistance Prediction by Analysis of Whole Genome Sequence Data Using ARESdb - An Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial.
    J Clin Microbiol. 2020 Apr 15. pii: JCM.00273-20. doi: 10.1128/JCM.00273.
    PubMed     Abstract available


  2. LEAL SM JR, Totten AH, Xiao L, Crabb DM, et al
    Evaluation of Commercial Molecular Diagnostic Methods for the Detection and Determination of Macrolide Resistance in Mycoplasma pneumoniae.
    J Clin Microbiol. 2020 Apr 8. pii: JCM.00242-20. doi: 10.1128/JCM.00242.
    PubMed     Abstract available


    March 2020
  3. GHORASHI SA, Heller J, Zhang Q, Sahibzada S, et al
    Differentiation of community-associated and livestock-associated methicillin-resistant Staphylococcus aureus isolates and identification of spa types using PCR and high-resolution melt curve analysis.
    J Clin Microbiol. 2020 Mar 4. pii: JCM.02088-19. doi: 10.1128/JCM.02088.
    PubMed     Abstract available


    February 2020
  4. KERSH EN, Pham CD, Papp JR, Myers R, et al
    Expanding US Laboratory Capacity for Neisseria gonorrhoeae Antimicrobial Susceptibility Testing and Whole Genome Sequencing through CDC's Antibiotic Resistance Laboratory Network.
    J Clin Microbiol. 2020 Feb 5. pii: JCM.01461-19. doi: 10.1128/JCM.01461.
    PubMed     Abstract available


    January 2020
  5. SWEENEY EL, Mhango LP, Ebeyan S, Tan LY, et al
    Evaluation of the ResistancePlus(R) MG FleXible cartridge for near point-of-care testing of Mycoplasma genitalium and associated macrolide resistance mutations.
    J Clin Microbiol. 2020 Jan 2. pii: JCM.01897-19. doi: 10.1128/JCM.01897.
    PubMed     Abstract available


    December 2019
  6. SARANATHAN R, Levi MH, Wattam AR, Malek A, et al
    Helicobacter pylori infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-genome Sequencing.
    J Clin Microbiol. 2019 Dec 4. pii: JCM.01591-19. doi: 10.1128/JCM.01591.
    PubMed     Abstract available


  7. LE ROY C, Bebear C, Pereyre S
    Clinical evaluation of three commercial PCR assays for the detection of macrolide resistance in Mycoplasma genitalium.
    J Clin Microbiol. 2019 Dec 4. pii: JCM.01478-19. doi: 10.1128/JCM.01478.
    PubMed     Abstract available


    November 2019
  8. DUPIEUX C, Mouton W, Andre C, Vandenesch F, et al
    Performance of the revised version of an immunochromatographic assay for the detection of mecA- and mecC-mediated methicillin resistance in staphylococci.
    J Clin Microbiol. 2019 Nov 6. pii: JCM.01346-19. doi: 10.1128/JCM.01346.
    PubMed     Abstract available


    October 2019
  9. WEINRICK B
    Genotyping of Mycobacterium tuberculosis Rifampin Resistance Associated Mutations Using Data From Xpert(R) MTB/RIF Ultra Enables Large-Scale Tuberculosis Molecular Epidemiology Studies.
    J Clin Microbiol. 2019 Oct 23. pii: JCM.01504-19. doi: 10.1128/JCM.01504.
    PubMed     Abstract available


  10. WORKNEH M, Wang R, Kazmi AQ, Chambers KK, et al
    Evaluation of the Direct MacConkey Method for Identification of Carbapenem-Resistant Gram-Negative Organisms from Rectal Swabs: Re-evaluating Zone Diameter Cutoffs.
    J Clin Microbiol. 2019 Oct 9. pii: JCM.01127-19. doi: 10.1128/JCM.01127.
    PubMed     Abstract available


  11. ALVAREZ A, Fernandez L, Gutierrez D, Iglesias B, et al
    Methicillin-resistant Staphylococcus aureus (MRSA) in hospitals: latest trends and treatments based on bacteriophages.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01006-19. doi: 10.1128/JCM.01006.
    PubMed     Abstract available


  12. SULLIVAN MJ, Altman DR, Chacko KI, Ciferri B, et al
    A complete genome screening program of clinical methicillin-resistant Staphylococcus aureus isolates identifies the origin and progression of a neonatal intensive care unit outbreak.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01261-19. doi: 10.1128/JCM.01261.
    PubMed     Abstract available


  13. MORRIS CP, Simner PJ
    Tailoring Antimicrobial Susceptibility Testing to Individual Species of Coagulase-Negative Staphylococci: Next up, Staphylococcus epidermidis.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01391-19. doi: 10.1128/JCM.01391.
    PubMed     Abstract available


    September 2019
  14. CAO Y, Parmar H, Simmons AM, Kale D, et al
    Automatic identification of individual rpoB gene mutations responsible for rifampin resistance in Mycobacterium tuberculosis using melting temperature signatures generated by the Xpert(R) MTB/RIF Ultra* assay.
    J Clin Microbiol. 2019 Sep 18. pii: JCM.00907-19. doi: 10.1128/JCM.00907.
    PubMed     Abstract available


  15. TENOVER FC, Tickler IA, Le VM, Dewell S, et al
    Updating Molecular Diagnostics for Detecting Methicillin-susceptible and Methicillin-resistant Staphylococcus aureus in Blood Culture Bottles.
    J Clin Microbiol. 2019 Sep 4. pii: JCM.01195-19. doi: 10.1128/JCM.01195.
    PubMed     Abstract available


  16. WAITES KB, Ratliff A, Crabb DM, Xiao L, et al
    Macrolide-Resistant Mycoplasma pneumoniae in the United States as Determined from a National Surveillance Program.
    J Clin Microbiol. 2019 Sep 4. pii: JCM.00968-19. doi: 10.1128/JCM.00968.
    PubMed     Abstract available


    August 2019
  17. NACCACHE SN, Callan K, Burnham CA, Wallace MA, et al
    Evaluation of Oxacillin and Cefoxitin Disk Diffusion and Microbroth Dilution Methods for Detecting mecA-mediated beta-lactam Resistance in Contemporary Staphylococcus epidermidis Isolates.
    J Clin Microbiol. 2019 Aug 28. pii: JCM.00961-19. doi: 10.1128/JCM.00961.
    PubMed     Abstract available


  18. FERNANDEZ-HUERTA M, Bodiyabadu K, Esperalba J, Bradshaw CS, et al
    Multicenter clinical evaluation of a novel multiplex real-time PCR (qPCR) assay for detection of fluoroquinolone resistance in Mycoplasma genitalium.
    J Clin Microbiol. 2019 Aug 21. pii: JCM.00886-19. doi: 10.1128/JCM.00886.
    PubMed     Abstract available


    July 2019
  19. KHAN A, Rivas LM, Spencer M, Martinez R, et al
    A Multicenter Study to Evaluate Ceftaroline Breakpoints: Performance in An Area with High Prevalence of Methicillin-Resistant Staphylococcus aureus ST5 Lineage.
    J Clin Microbiol. 2019 Jul 17. pii: JCM.00798-19. doi: 10.1128/JCM.00798.
    PubMed     Abstract available


    June 2019
  20. HO HJ, Tan MX, Chen MI, Tan TY, et al
    Interaction between Antibiotic Resistance, Resistance Genes and Treatment Response for Urinary Tract Infections in Primary Care.
    J Clin Microbiol. 2019 Jun 26. pii: JCM.00143-19. doi: 10.1128/JCM.00143.
    PubMed     Abstract available


  21. TAM KK, Leung KS, Siu GK, Chang KC, et al
    Direct detection of pyrazinamide resistance of Mycobacterium tuberculosis using pncA PCR Sequencing.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00145-19. doi: 10.1128/JCM.00145.
    PubMed     Abstract available


    May 2019
  22. O'DEA M, Sahibzada S, Jordan D, Laird T, et al
    Genomic, antimicrobial resistance and public health insights into Enterococcus spp. from Australian chickens.
    J Clin Microbiol. 2019 May 22. pii: JCM.00319-19. doi: 10.1128/JCM.00319.
    PubMed     Abstract available


    March 2019
  23. MACFADDEN DR, Melano RG, Coburn B, Tijet N, et al
    Comparing Patient Risk Factors, Sequence Type, and Resistance Loci Identification Approaches for Predicting Antibiotic Resistance in Escherichia coli Bloodstream Infections.
    J Clin Microbiol. 2019 Mar 20. pii: JCM.01780-18. doi: 10.1128/JCM.01780.
    PubMed     Abstract available


  24. BOWLER SL, Towne JW, Humphries RM, Doi Y, et al
    Evaluation of the Accelerate Pheno System for Identification of Acinetobacter Clinical Isolates and Minocycline Susceptibility Testing.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available


    February 2019
  25. WELSH RM, Sexton DJ, Forsberg K, Vallabhaneni S, et al
    Insights into the Unique Nature of the East Asian Clade of the Emerging Pathogenic Yeast, Candida auris.
    J Clin Microbiol. 2019 Feb 13. pii: JCM.00007-19. doi: 10.1128/JCM.00007.
    PubMed     Abstract available


  26. YAN Q, Wi YM, Thoendel MJ, Raval YS, et al
    Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available


  27. NGUYEN M, Long SW, McDermott PF, Olsen RJ, et al
    Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available


    January 2019
  28. SALAH M, Shtayeh I, Ghneim R, Al-Qass R, et al
    Evaluation of Shigella species Azithromycin CLSI Epidemiological Cutoff Values and Macrolide Resistance Genes.
    J Clin Microbiol. 2019 Jan 30. pii: JCM.01422-18. doi: 10.1128/JCM.01422.
    PubMed     Abstract available


  29. HU P, Zhang H, Fleming J, Zhu G, et al
    Retrospective analysis of false-positive and disputed rifampin resistance Xpert MTB/RIF assay results in clinical samples from a referral hospital in Hunan, China.
    J Clin Microbiol. 2019 Jan 23. pii: JCM.01707-18. doi: 10.1128/JCM.01707.
    PubMed     Abstract available


  30. SWEENEY EL, Trembizki E, Bletchly C, Bradshaw CS, et al
    Levels of Mycoplasma genitalium antimicrobial resistance differ by both region and gender in the state of Queensland, Australia: implications for treatment guidelines.
    J Clin Microbiol. 2019 Jan 2. pii: JCM.01555-18. doi: 10.1128/JCM.01555.
    PubMed     Abstract available


  31. JOSTE V, Gyde E, Toullec L, Courboules C, et al
    Enterococcus faecium and ampicillin susceptibility determination: overestimation of resistance with disk diffusion method using ampicillin 2 microg?
    J Clin Microbiol. 2019 Jan 2. pii: JCM.01467-18. doi: 10.1128/JCM.01467.
    PubMed     Abstract available


  32. KATIYO S, Muller-Pebody B, Minaji M, Powell D, et al
    Epidemiology and Outcomes of Nontyphoidal Salmonella Bacteremias from England, 2004 to 2015.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available


  33. NORDMANN P, Poirel L, Mueller L
    Rapid Detection of Fosfomycin Resistance in Escherichia coli.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available


  34. FONTANA L, Bonura E, Lyski Z, Messer W, et al
    Closing the Brief Case: Klebsiella variicola-Identifying the Misidentified.
    J Clin Microbiol. 2019;57.
    PubMed    


    December 2018
  35. OPOTA O, Zakham F, Mazza-Stalder J, Nicod L, et al
    Added-value of Xpert MTB/RIF Ultra for the diagnosis of pulmonary tuberculosis in a low prevalence setting.
    J Clin Microbiol. 2018 Dec 12. pii: JCM.01717-18. doi: 10.1128/JCM.01717.
    PubMed     Abstract available


    November 2018
  36. MONK JM
    Predicting Antimicrobial Resistance and Associated Genomic Features from Whole Genome Sequencing.
    J Clin Microbiol. 2018 Nov 21. pii: JCM.01610-18. doi: 10.1128/JCM.01610.
    PubMed     Abstract available


  37. ALCANTARA R, Fuentes P, Antiparra R, Santos M, et al
    MODS-Wayne: A colorimetric adaptation of the MODS assay for the detection of Mycobacterium tuberculosis pyrazinamide resistance from sputum samples.
    J Clin Microbiol. 2018 Nov 14. pii: JCM.01162-18. doi: 10.1128/JCM.01162.
    PubMed     Abstract available


  38. ECHANIZ-AVILES G, Guerreiro SI, Silva-Costa C, Mendes CI, et al
    Streptococcus pneumoniae serotype 3 in Mexico (1994-2017): decrease of the unusual CC4909 lineage post-PCV13 introduction.
    J Clin Microbiol. 2018 Nov 7. pii: JCM.01354-18. doi: 10.1128/JCM.01354.
    PubMed     Abstract available


  39. VAZIRI F, Kohl TA, Ghajavand H, Kargarpour Kamakoli M, et al
    The genetic diversity of multi and extensively drug resistant Mycobacterium tuberculosis in the capital of Iran revealed by whole genome sequencing.
    J Clin Microbiol. 2018 Nov 7. pii: JCM.01477-18. doi: 10.1128/JCM.01477.
    PubMed     Abstract available


    October 2018
  40. SU M, Satola SW, Read TD
    Genome-based prediction of bacterial antibiotic resistance.
    J Clin Microbiol. 2018 Oct 31. pii: JCM.01405-18. doi: 10.1128/JCM.01405.
    PubMed     Abstract available


  41. KOJIMA Y, Furubayashi K, Kawahata T, Mori H, et al
    Circulation of Distinct Treponema pallidum Strains in Individuals with Heterosexual Orientation and Men Who Have Sex with Men (MSM).
    J Clin Microbiol. 2018 Oct 31. pii: JCM.01148-18. doi: 10.1128/JCM.01148.
    PubMed     Abstract available


  42. KANAI M, Arima Y, Nishiki S, Shimuta K, et al
    Molecular typing and macrolide resistance analyses of Treponema pallidum in heterosexuals and men who have sex with men in Japan in 2017.
    J Clin Microbiol. 2018 Oct 24. pii: JCM.01167-18. doi: 10.1128/JCM.01167.
    PubMed     Abstract available


    September 2018
  43. SADER HS, Rhomberg PR, Doyle TB, Flamm RK, et al
    Evaluation of the Revised Ceftaroline Disk Diffusion Breakpoints when Testing a Challenge Collection of Methicillin-Resistant Staphylococcus aureus.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.00777-18. doi: 10.1128/JCM.00777.
    PubMed     Abstract available


    August 2018
  44. ROOF I, Jajou R, Kamst M, Mulder A, et al
    Prevalence and characterization of heterogeneous VNTR clusters comprising drug susceptible and/or variable resistant Mycobacterium tuberculosis complex isolates in the Netherlands from 2004-2016.
    J Clin Microbiol. 2018 Aug 29. pii: JCM.00887-18. doi: 10.1128/JCM.00887.
    PubMed     Abstract available


    July 2018
  45. VATANSHENASSAN M, Boekhout T, Lass-Florl C, Lackner M, et al
    MBT ASTRA: Proof-of-concept for a rapid MALDI-TOF MS based method to detect caspofungin resistance in Candida albicans and Candida glabrata.
    J Clin Microbiol. 2018 Jul 18. pii: JCM.00420-18. doi: 10.1128/JCM.00420.
    PubMed     Abstract available


  46. LECUYER TE, Byrne BA, Daniels JB, Diaz-Campos DV, et al
    Population structure and antimicrobial resistance of canine uropathogenic Escherichia coli.
    J Clin Microbiol. 2018 Jul 11. pii: JCM.00788-18. doi: 10.1128/JCM.00788.
    PubMed     Abstract available


  47. FABRE A, Oleastro M, Nunes A, Santos A, et al
    Whole-genome sequence analysis of multidrug resistant Campylobacter spp. isolates: a focus on aminoglycoside resistance determinants.
    J Clin Microbiol. 2018 Jul 5. pii: JCM.00390-18. doi: 10.1128/JCM.00390.
    PubMed     Abstract available


  48. DE VOS M, Derendinger B, Dolby T, Simpson J, et al
    Diagnostic accuracy and utility of a new molecular assay for multidrug-resistant tuberculosis: FluoroType MTBDR.
    J Clin Microbiol. 2018 Jul 5. pii: JCM.00531-18. doi: 10.1128/JCM.00531.
    PubMed     Abstract available


    June 2018
  49. DONA V, Smid JH, Kasraian S, Egli-Gany D, et al
    Mismatch Amplification Mutation Assay (MAMA)-Based Real-Time PCR for Rapid Detection of Neisseria gonorrhoeae and Antimicrobial Resistance Determinants in Clinical Specimens.
    J Clin Microbiol. 2018 Jun 27. pii: JCM.00365-18. doi: 10.1128/JCM.00365.
    PubMed     Abstract available


  50. PEREZ-RISCO D, Rodriguez-Temporal D, Valledor-Sanchez I, Alcaide F, et al
    Evaluation of the Xpert MTB/RIF Ultra Assay for Direct Detection of Mycobacterium tuberculosis Complex in Smear-Negative Extrapulmonary Samples.
    J Clin Microbiol. 2018 Jun 27. pii: JCM.00659-18. doi: 10.1128/JCM.00659.
    PubMed     Abstract available


  51. YU F, Lv J, Niu S, Du H, et al
    Multiplex PCR analysis for the rapid detection of Klebsiella pneumoniae carbapenem-resistant (ST258, 11) and hypervirulent (ST23, 65, 86, 375) strains.
    J Clin Microbiol. 2018 Jun 20. pii: JCM.00731-18. doi: 10.1128/JCM.00731.
    PubMed     Abstract available


  52. MASON A, Foster D, Bradley P, Golubchik T, et al
    Accuracy of different bioinformatics methods in detecting antibiotic resistance and virulence factors from Staphylococcus aureus whole genome sequences.
    J Clin Microbiol. 2018 Jun 20. pii: JCM.01815-17. doi: 10.1128/JCM.01815.
    PubMed     Abstract available


  53. SUN L, Talarico S, Yao L, He L, et al
    Droplet Digital PCR detection of Helicobacter pylori clarithromycin resistance reveals frequent heteroresistance.
    J Clin Microbiol. 2018 Jun 20. pii: JCM.00019-18. doi: 10.1128/JCM.00019.
    PubMed     Abstract available


    May 2018
  54. DOYLE RM, Burgess C, Williams R, Gorton R, et al
    Direct whole genome sequencing of sputum accurately identifies drug resistant Mycobacterium tuberculosis faster than MGIT culture sequencing.
    J Clin Microbiol. 2018 May 30. pii: JCM.00666-18. doi: 10.1128/JCM.00666.
    PubMed     Abstract available


  55. LO SW, Gladstone RA, van Tonder AJ, Hawkins PA, et al
    Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction.
    J Clin Microbiol. 2018 May 2. pii: JCM.00228-18. doi: 10.1128/JCM.00228.
    PubMed     Abstract available


  56. GWOZDZINSKI K, Azarderakhsh S, Imirzalioglu C, Falgenhauer L, et al
    An Improved Medium for Colistin Susceptibility Testing.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available


    April 2018
  57. RAMOS R, Caceres DH, Perez M, Garcia N, et al
    Emerging multidrug-resistant Candida duobushaemulonii infections in Panama hospitals: importance of laboratory surveillance and accurate identification.
    J Clin Microbiol. 2018 Apr 25. pii: JCM.00371-18. doi: 10.1128/JCM.00371.
    PubMed     Abstract available


  58. CARRETTO E, Brovarone F, Russello G, Nardini P, et al
    Clinical Validation of SensiTest Colistin, a Broth Microdilution-Based Method To Evaluate Colistin MICs.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available


  59. ASTVAD KMT, Johansen HK, Roder BL, Rosenvinge FS, et al
    Update from a 12-Year Nationwide Fungemia Surveillance: Increasing Intrinsic and Acquired Resistance Causes Concern.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available


  60. HACKEL MA, Iaconis JP, Karlowsky JA, Sahm DF, et al
    Analysis of Potential beta-Lactam Surrogates To Predict In Vitro Susceptibility and Resistance to Ceftaroline for Clinical Isolates of Enterobacteriaceae.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available


  61. YAMAJI R, Rubin J, Thys E, Friedman CR, et al
    Persistent Pandemic Lineages of Uropathogenic Escherichia coli in a College Community from 1999 to 2017.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available


    March 2018
  62. HILLEMANN D, Haasis C, Andres S, Behn T, et al
    Validation of the FluoroType(R) MTBDR assay for the detection of rifampicin and isoniazid resistance in Mycobacterium tuberculosis complex isolates.
    J Clin Microbiol. 2018 Mar 28. pii: JCM.00072-18. doi: 10.1128/JCM.00072.
    PubMed     Abstract available


  63. DAUM LT, Konstantynovska OS, Solodiankin OS, Liashenko OO, et al
    Next-Generation Sequencing for Characterizing Drug Resistant Mycobacterium tuberculosis Genes from Clinical Isolates in the Ukraine.
    J Clin Microbiol. 2018 Mar 21. pii: JCM.00009-18. doi: 10.1128/JCM.00009.
    PubMed     Abstract available


  64. MANINGI NE, Daum LT, Rodriguez JD, Said HM, et al
    Multi- and Extensively-Drug Resistant Mycobacterium tuberculosis in South Africa: A Molecular Analysis of Historical Isolates.
    J Clin Microbiol. 2018 Mar 7. pii: JCM.01214-17. doi: 10.1128/JCM.01214.
    PubMed     Abstract available


    February 2018
  65. CASTANHEIRA M
    Fungemia Surveillance in Denmark Demonstrates Emergence of Candida non-albicans, Higher Antifungal Usage and Resistance Rates When Compared to Other Nations.
    J Clin Microbiol. 2018 Feb 7. pii: JCM.01907-17. doi: 10.1128/JCM.01907.
    PubMed     Abstract available


  66. LAINHART W, Yarbrough ML, Burnham CA
    The Brief Case: Staphylococcus intermedius Group-Look What the Dog Dragged In.
    J Clin Microbiol. 2018;56.
    PubMed    


    January 2018
  67. LI Y, Sun QL, Shen Y, Zhang Y, et al
    Rapid increase in the prevalence of carbapenem-resistant Enterobacteriaceae (CRE) and emergence of colistin resistance gene mcr-1 in CRE in a hospital in Henan, China.
    J Clin Microbiol. 2018 Jan 31. pii: JCM.01932-17. doi: 10.1128/JCM.01932.
    PubMed     Abstract available


  68. BAO JR, Master RN, Azad KN, Schwab DA, et al
    Rapid, Accurate Identification of Candida auris by Using a Novel MALDI-TOF Database (Library).
    J Clin Microbiol. 2018 Jan 24. pii: JCM.01700-17. doi: 10.1128/JCM.01700.
    PubMed     Abstract available


  69. YARBROUGH ML, Lainhart W, Burnham CA
    Epidemiology, Clinical Characteristics, and Antimicrobial Susceptibility Profiles of Human Clinical Isolates of Staphylococcus intermedius Group.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01788-17. doi: 10.1128/JCM.01788.
    PubMed     Abstract available


  70. LINGER Y, Knickerbocker C, Sipes D, Golova J, et al
    Genotyping Multi-Drug Resistant M. tuberculosis from Primary Sputum and Decontaminated Sediment with an Integrated Microfluidic Amplification Microarray.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01652-17. doi: 10.1128/JCM.01652.
    PubMed     Abstract available


    December 2017
  71. KNETSCH CW, Kumar N, Forster SC, Connor TR, et al
    Zoonotic transfer of Clostridium difficile harboring antimicrobial resistance between farm animals and humans.
    J Clin Microbiol. 2017 Dec 13. pii: JCM.01384-17. doi: 10.1128/JCM.01384.
    PubMed     Abstract available


  72. HUMPHRIES RM, Hindler JA, Magnano P, Wong-Beringer A, et al
    Performance of ceftolozane-tazobactam Etest, MIC Test Strips and Disk Diffusion as Compared to Reference Broth Microdilution for Beta-lactam resistant Pseudomonas aeruginosa isolates.
    J Clin Microbiol. 2017 Dec 6. pii: JCM.01633-17. doi: 10.1128/JCM.01633.
    PubMed     Abstract available


  73. HAVLICEK J, Dachsel B, Slickers P, Andres S, et al
    Rapid Microarray-based Detection of Rifampicin-, Isoniazid- and Fluoroquinolone Resistance in Mycobacterium tuberculosis using a Single Cartridge.
    J Clin Microbiol. 2017 Dec 6. pii: JCM.01249-17. doi: 10.1128/JCM.01249.
    PubMed     Abstract available


    November 2017
  74. HUSE HK, Miller SA, Chandrasekaran S, Hindler JA, et al
    Clinical and Laboratory Standards Institute (CLSI) Evaluation of Oxacillin and Cefoxitin Disk Diffusion and Minimum Inhibitory Concentration Breakpoints for Detection of mecA-mediated Oxacillin Resistance in Staphylococcus schleiferi.
    J Clin Microbiol. 2017 Nov 29. pii: JCM.01653-17. doi: 10.1128/JCM.01653.
    PubMed     Abstract available


  75. SHIELDS RK, Clancy CJ, Pasculle AW, Press EG, et al
    Verification of ceftazidime-avibactam and ceftolozane-tazobactam susceptibility testing methods against carbapenem-resistant Enterobacteriaceae and Pseudomonas aeruginosa.
    J Clin Microbiol. 2017 Nov 22. pii: JCM.01093-17. doi: 10.1128/JCM.01093.
    PubMed     Abstract available


  76. SPIVAK ES, Hanson KE
    Candida auris: An Emerging Fungal Pathogen.
    J Clin Microbiol. 2017 Nov 22. pii: JCM.01588-17. doi: 10.1128/JCM.01588.
    PubMed     Abstract available


  77. YARBROUGH ML, Warren DK, Allen K, Burkholder D, et al
    Multicenter evaluation of the Xpert MRSA NxG Assay for detection of methicillin resistant Staphylococcus aureus in nasal swabs.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01381-17. doi: 10.1128/JCM.01381.
    PubMed     Abstract available


  78. LUTGRING JD, Machado MJ, Benahmed FH, Conville P, et al
    FDA-CDC Antimicrobial Resistance Isolate Bank: A Publicly-Available Resource to Support Research, Development and Regulatory Requirements.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01415-17. doi: 10.1128/JCM.01415.
    PubMed     Abstract available


  79. LIANG B, Tan Y, Li Z, Tian X, et al
    Highly Sensitive Detection of Isoniazid Heteroresistance in Mycobacterium tuberculosis by DeepMelt Assay.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01239-17. doi: 10.1128/JCM.01239.
    PubMed     Abstract available


  80. KANJILAL S, Sater MRA, Thayer M, Lagoudas GK, et al
    Trends in antibiotic susceptibility in Staphylococcus aureus in Boston, Massachusetts, 2000-2014.
    J Clin Microbiol. 2017 Nov 1. pii: JCM.01160-17. doi: 10.1128/JCM.01160.
    PubMed     Abstract available


    October 2017
  81. KRIEGESKORTE A, Idelevich EA, Schlattmann A, Layer F, et al
    Comparison of Different Phenotypic Approaches to Screen and Detect mecC-Harboring Methicillin-Resistant Staphylococcus aureus.
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    September 2017
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    Genetic mimetics of Mycobacterium tuberculosis and methicillin resistant Staphylococcus aureus as verification standards for molecular diagnostics.
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    Comparison of automated antimicrobial susceptibility testing systems to detect mecC-positive methicillin-resistant Staphylococcus aureus.
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  84. MUSTAZZOLU A, Iacobino A, Giannoni F, Piersimoni C, et al
    Improved Bactec MGIT 960 Pyrazinamide Test Decreases Detection of False Mycobacterium tuberculosis Pyrazinamide Resistance.
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  85. LOCKHART SR, Jackson BR, Vallabhaneni S, Ostrosky-Zeichner L, et al
    Thinking beyond the common Candida species: Need for speciation of Candida due to the emergence of multidrug resistant Candida auris.
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  86. ANDERSON T, Coughlan E, Werno A
    Mycoplasma genitalium macrolide and fluoroquinolone resistance detection and clinical implications in a selected cohort in New Zealand.
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    August 2017
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    Molecular diagnosis of invasive aspergillosis and detection of azole resistance by a newly commercialized PCR kit.
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  89. POST V, Harris LG, Morgenstern M, Mageiros L, et al
    A comparative genomics study of Staphylococcus epidermidis from orthopedic device-related infections correlated with patient outcome.
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  90. BRENNAN-KROHN T, Smith KP, Kirby JE
    The Poisoned Well: Enhancing the Predictive Value of Antimicrobial Susceptibility Testing in the Era of Multidrug Resistance.
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    July 2017
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    Survival, Persistence, and Isolation of the Emerging Multidrug-Resistant Pathogenic Yeast Candida auris on a Plastic Healthcare Surface.
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    Accurate detection of methicillin-resistant Staphylococcus aureus in mixtures utilizing single bacterial duplex droplet digital PCR.
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    Carbapenemase Detection amongst Carbapenem-Resistant Glucose Nonfermenting Gram-Negative Bacilli.
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    Next-generation sequence analysis reveals methicillin-resistance transfer to a methicillin-susceptible Staphylococcus aureus (MSSA) strain that subsequently caused a methicillin-resistant Staphylococcus aureus (MRSA) outbreak: a descriptive study.
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    June 2017
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    Whole Genome Sequencing Overrules a Suspected Case of Carbapenem-Resistant Enterobacter cloacae Transmission.
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    Colistin and polymyxin B susceptibility testing for carbapenem-resistant and mcr-positive Enterobacteriaceae: Comparison of Sensititre, Microscan, Vitek 2, and Etest with broth microdilution.
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    Emergence of a Staphylococcus aureus clone resistant to mupirocin and fusidic acid carrying exotoxin genes and causing mainly skin infections.
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    May 2017
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    Rapid Identification of Five Classes of Carbapenem-Resistance Genes Directly from Rectal Swabs using the Xpert(R) Carba-R Assay.
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    Culture based methods and molecular tools for azole-resistant Aspergillus fumigatus detection in a Belgian University hospital.
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  100. BECKMAN E, Saracino I, Fiorini G, Clark C, et al
    A Novel stool PCR Test for Helicobacter pylori may Predict Clarithromycin Resistance and Patient Eradication at a High Rate.
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  101. WHITE PL, Posso RB, Barnes RA
    An analytical and clinical evaluation of the PathoNostics AsperGenius(R) Assay for the detection of invasive aspergillosis and resistance to azole antifungal drugs direct from plasma samples.
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    Single negative van qPCR on enrichment broth can replace five rectal swab cultures for the screening of vancomycin-resistent Enterococci.
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    High macrolide resistance in Mycoplasma genitalium strains causing infection in Auckland, New Zealand.
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  104. LOCKHART SR, Ghannoum MA, Alexander BD
    Establishment and Use of Epidemiological Cutoff Values for Molds and Yeasts by Use of the Clinical and Laboratory Standards Institute M57 Standard.
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    April 2017
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    The use of GeneXpert remnants for drug resistance profiling and molecular epidemiology of tuberculosis in Libreville, Gabon.
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    Differentiated levels of ganciclovir resistance conferred by mutations at codons 591-603 of the cytomegalovirus UL97 kinase gene.
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    Comparison of Two Whole-Genome Sequencing Methods for Analysis of Three Methicillin-Resistant Staphylococcus aureus Outbreaks.
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    Non pncA gene-mutated but pyrazinamide resistant M. tuberculosis, why is that?
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    An Update on Antimicrobial Resistance in Clostridium difficile: Resistance Mechanisms and Antimicrobial Susceptibility Testing.
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    A Novel Multiplex PCR Assay for the Detection of Chlorhexidine/Quaternary Ammonium, Mupirocin and Methicillin Resistance Genes with Simultaneous Discrimination of Staphylococcus aureus from Coagulase-Negative Staphylococci.
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    Prospective evaluation of ResistancePlus MG, a new multiplex qPCR assay for the detection of Mycoplasma genitalium and macrolide resistance.
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    Comprehensive whole-genome sequencing and reporting of drug resistance profiles on clinical cases of Mycobacterium tuberculosis in New York State.
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    Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States.
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    March 2017
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    Direct detection of Rifampicin and Isoniazid resistance in sputum samples from tuberculosis patients by High Resolution Melt curve analysis.
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    Molecular Epidemiology of Clostridium difficile Infection in Hospitalized Patients in Eastern China.
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    Emergence of Multidrug-Resistant Pneumococcal Serotype 35B among Children in the United States.
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    Utility of second generation line probe assay (Hain MTBDRplus) directly on 2-month sputa specimens to monitor tuberculosis treatment response.
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    February 2017
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    Emergence of mmpT5 Variants during Bedaquiline Treatment of Mycobacterium intracellulare Lung Disease.
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    January 2017
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    Multicenter evaluation of the Portrait Staph ID/R blood culture panel for the rapid identification of Staphylococci and detection of mecA gene.
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    FIND Tuberculosis Strain Bank: a resource for researchers and developers working on tests to detect Mycobacterium tuberculosis and related drug resistance.
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    December 2016
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    Evaluation of the Genotype(R) MTBDRsl(R) VER 2.0 assay for second-line drug resistance detection of Mycobacterium tuberculosis isolates in South Africa.
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    November 2016
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    October 2016
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    September 2016
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    August 2016
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    July 2016
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    May 2016
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    April 2016
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