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Articles published in J Clin Microbiol

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    November 2021
  1. WHITFIELD MG, Engelthaler DM, Allender C, Folkerts M, et al
    Comparative Performance of Genomic Methods for the Detection of Pyrazinamide Resistance and Heteroresistance in Mycobacterium tuberculosis.
    J Clin Microbiol. 2021 Nov 10:JCM0190721. doi: 10.1128/JCM.01907.
    PubMed     Abstract available

    October 2021
  2. WOOD GE, Jensen NL, Astete S, Jensen JS, et al
    Azithromycin and Doxycycline Resistance Profiles of U.S. Mycoplasma genitalium Strains and Their Association with Treatment Outcomes.
    J Clin Microbiol. 2021;59:e0081921.
    PubMed     Abstract available

    September 2021
  3. BIZOT E, Cointe A, Smadja N, Sergentet D, et al
    Improved molecular diagnosis and culture of the emerging heteropathotype enterohemorrhagic Escherichia coli O80:H2 using its non-melibiose-fermenting and antibiotic-resistance properties.
    J Clin Microbiol. 2021 Sep 29:JCM0153021. doi: 10.1128/JCM.01530.
    PubMed     Abstract available

  4. ITO CAS, Bail L, Arend LNVS, Silva KO, et al
    Evaluation of Microscan WalkAway for determination of ceftazidime/avibactam and ceftolozane/tazobactam susceptibility in carbapenem-resistant Gram-negative bacilli.
    J Clin Microbiol. 2021 Sep 29:JCM0153621. doi: 10.1128/JCM.01536.
    PubMed     Abstract available

  5. IWAO Y, Mori S, Ato M, Nakata N, et al
    Simultaneous Determination of Mycobacterium leprae Drug Resistance and Single-Nucleotide Polymorphism Genotype by Use of Nested Multiplex PCR with Amplicon Sequencing.
    J Clin Microbiol. 2021;59:e0081421.
    PubMed     Abstract available

    August 2021
  6. GAMMEL N, Ross TL, Lewis S, Olson M, et al
    Comparison of an Automated Plate Assessment System (APAS Independence) and Artificial Intelligence (AI) to Manual Plate Reading of Methicillin-resistant and Methicillin-susceptible Staphylococcus aureus Chromagar Surveillance Cultures.
    J Clin Microbiol. 2021 Aug 11:JCM0097121. doi: 10.1128/JCM.00971.
    PubMed     Abstract available

  7. VENTER JME, Muller EE, Mahlangu MP, Kularatne RS, et al
    Treponema pallidum macrolide resistance and molecular epidemiology in southern Africa, 2008-2018.
    J Clin Microbiol. 2021 Aug 4:JCM0238520. doi: 10.1128/JCM.02385.
    PubMed     Abstract available

    July 2021
  8. EROL E, Scortti M, Fortner J, Patel M, et al
    Antimicrobial resistance spectrum conferred by pRErm46 of emerging macrolide (multidrug)-resistant Rhodococcus equi.
    J Clin Microbiol. 2021 Jul 28:JCM0114921. doi: 10.1128/JCM.01149.
    PubMed     Abstract available

  9. CHU SV, Vu ST, Nguyen HM, Le NT, et al
    Fast and sensitive real-time PCR detection of major antiviral drug-resistance mutations in chronic hepatitis B patients using a predesigned panel of Locked-Nucleic-Acid TaqMan probes.
    J Clin Microbiol. 2021 Jul 28:JCM0093621. doi: 10.1128/JCM.00936.
    PubMed     Abstract available

  10. MARRAS SAE, Chen L, Shashkina E, Davidson RM, et al
    A Molecular-Beacon-Based Multiplex Real-Time PCR Assay To Distinguish Mycobacterium abscessus Subspecies and Determine Macrolide Susceptibility.
    J Clin Microbiol. 2021;59:e0045521.
    PubMed     Abstract available

  11. BERINSON B, Both A, Berneking L, Christner M, et al
    Usefulness of BioFire FilmArray BCID2 for Blood Culture Processing in Clinical Practice.
    J Clin Microbiol. 2021;59:e0054321.
    PubMed     Abstract available

    June 2021
  12. FOUDRAINE DE, Strepis N, Klaassen CHW, Raaphorst MN, et al
    Rapid and Accurate Detection of Aminoglycoside-Modifying Enzymes and 16S rRNA Methyltransferases by Targeted Liquid Chromatography-Tandem Mass Spectrometry.
    J Clin Microbiol. 2021;59:e0046421.
    PubMed     Abstract available

  13. MEYER SAUTEUR PM, Panisova E, Seiler M, Theiler M, et al
    Mycoplasma pneumoniae Genotypes and Clinical Outcome in Children.
    J Clin Microbiol. 2021;59:e0074821.
    PubMed     Abstract available

    May 2021
  14. KHAN A, Rivas LM, Spencer M, Martinez R, et al
    Correction for Khan et al., "A Multicenter Study To Evaluate Ceftaroline Breakpoints: Performance in an Area with High Prevalence of Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Lineage".
    J Clin Microbiol. 2021;59.

  15. YEE R, Dien Bard J, Simner PJ
    The Genotype-to-Phenotype Dilemma: How Should Laboratories Approach Discordant Susceptibility Results?
    J Clin Microbiol. 2021;59.
    PubMed     Abstract available

    April 2021
  16. KAKIUCHI T, Miyata I, Kimura R, Shimomura G, et al
    Clinical evaluation of a novel point-of-care assay to detect Mycoplasma pneumoniae and associated macrolide resistant mutations.
    J Clin Microbiol. 2021 Apr 28. pii: JCM.03245-20. doi: 10.1128/JCM.03245.
    PubMed     Abstract available

    March 2021
  17. VALLABHANENI S, Huang JY, Grass JE, Bhatnagar A, et al
    Antimicrobial Susceptibility Profiles to Predict the Presence of Carbapenemase Genes among Carbapenem-Resistant Pseudomonas aeruginosa.
    J Clin Microbiol. 2021 Mar 24. pii: JCM.02874-20. doi: 10.1128/JCM.02874.
    PubMed     Abstract available

  18. LE ROY C, Bebear C, Pereyre S
    Performance of Three Commercial Molecular Diagnostic Assays for the Simultaneous Detection of Mycoplasma genitalium and Macrolide Resistance.
    J Clin Microbiol. 2021 Mar 17. pii: JCM.00020-21. doi: 10.1128/JCM.00020.
    PubMed     Abstract available

  19. MANNION A, Dzink-Fox J, Shen Z, Piazuelo MB, et al
    Helicobacter pylori antimicrobial resistance and gene variants in high and low gastric cancer risk populations.
    J Clin Microbiol. 2021 Mar 10. pii: JCM.03203-20. doi: 10.1128/JCM.03203.
    PubMed     Abstract available

  20. LEE DYJ, Ashcroft MM, Chow EPF, Sait M, et al
    Reflex detection of ciprofloxacin resistance in Neisseria gonorrhoeae using the SpeeDx ResistancePlus(R) GC assay.
    J Clin Microbiol. 2021 Mar 3. pii: JCM.00089-21. doi: 10.1128/JCM.00089.
    PubMed     Abstract available

    February 2021
  21. KLEIN M, Bacher J, Barth S, Atrzadeh F, et al
    Multicenter Evaluation of the Unyvero Platform for Testing Bronchoalveolar Lavage Fluid.
    J Clin Microbiol. 2021;59.
    PubMed     Abstract available

  22. ANAHTAR MN, Yang JH, Kanjilal S
    Applications of machine learning to the problem of antimicrobial resistance: An emerging model for translational research.
    J Clin Microbiol. 2021 Feb 3. pii: JCM.01260-20. doi: 10.1128/JCM.01260.
    PubMed     Abstract available

  23. MARRERO ROLON R, Cunningham SA, Mandrekar JN, Polo ET, et al
    Clinical Evaluation of a Real-Time PCR Assay for Simultaneous Detection of Helicobacter pylori and Genotypic Markers of Clarithromycin Resistance Directly from Stool.
    J Clin Microbiol. 2021 Feb 3. pii: JCM.03040-20. doi: 10.1128/JCM.03040.
    PubMed     Abstract available

    January 2021
  24. SUKHUM KV, Jean S, Wallace M, Anderson N, et al
    Genomic Characterization of Emerging Bacterial Uropathogen Neisseria meningitidis, Which Was Misidentified as Neisseria gonorrhoeae by Nucleic Acid Amplification Testing.
    J Clin Microbiol. 2021;59.
    PubMed     Abstract available

  25. CORTAZZO V, D'Inzeo T, Giordano L, Menchinelli G, et al
    Comparing BioFire FilmArray BCID2 and BCID panels for direct detection of bacterial pathogens and antimicrobial resistance genes from positive blood cultures.
    J Clin Microbiol. 2021 Jan 20. pii: JCM.03163-20. doi: 10.1128/JCM.03163.
    PubMed     Abstract available

  26. GABRIELAITE M, Bartell JA, Norskov-Lauritsen N, Pressler T, et al
    Transmission and antibiotic resistance of Achromobacter in cystic fibrosis.
    J Clin Microbiol. 2021 Jan 20. pii: JCM.02911-20. doi: 10.1128/JCM.02911.
    PubMed     Abstract available

    December 2020
  27. CAO Y, Parmar H, Gaur RL, Lieu D, et al
    Xpert MTB/XDR: A ten-color reflex assay suitable for point of care settings to detect isoniazid-, fluoroquinolone-, and second-line injectable drug-resistance directly from Mycobacterium tuberculosis positive sputum.
    J Clin Microbiol. 2020 Dec 9. pii: JCM.02314-20. doi: 10.1128/JCM.02314.
    PubMed     Abstract available

    November 2020
  28. LIU HC, Gao YL, Li DF, Zhao XY, et al
    Value of Xpert MTB/RIF Using Bronchoalveolar Lavage Fluid for the Diagnosis of Pulmonary Tuberculosis: A Systematic Review and Meta-Analysis.
    J Clin Microbiol. 2020 Nov 11. pii: JCM.02170-20. doi: 10.1128/JCM.02170.
    PubMed     Abstract available

    October 2020
  29. HUMPHRIES RM, Magnano P, Burnham CA, Dien Bard J, et al
    Evaluation of surrogate tests for the presence of mecA-mediated methicillin resistance in Staphylococcus haemolyticus, Staphylococcus hominis, Staphylococcus capitis and Staphylococcus warneri.
    J Clin Microbiol. 2020 Oct 28. pii: JCM.02290-20. doi: 10.1128/JCM.02290.
    PubMed     Abstract available

    September 2020
  30. SHEA J, Halse TA, Kohlerschmidt D, Lapierre P, et al
    Low-level rifampin resistance and rpoB mutations in Mycobacterium tuberculosis: An analysis of whole-genome sequencing and drug susceptibility test data in New York.
    J Clin Microbiol. 2020 Sep 30. pii: JCM.01885-20. doi: 10.1128/JCM.01885.
    PubMed     Abstract available

  31. SORIA ME, Garcia-Crespo C, Martinez-Gonzalez B, Vazquez-Sirvent L, et al
    Amino acid substitutions associated with treatment failure of hepatitis C virus infection.
    J Clin Microbiol. 2020 Sep 30. pii: JCM.01985-20. doi: 10.1128/JCM.01985.
    PubMed     Abstract available

  32. THUY DUONG V, Chung The H, Do Hoang Nhu T, Thanh Tuyen H, et al
    Genomic serotyping, clinical manifestations, and antimicrobial resistance of non-typhoidal Salmonella gastroenteritis in hospitalized children in Ho Chi Minh City, Vietnam.
    J Clin Microbiol. 2020 Sep 9. pii: JCM.01465-20. doi: 10.1128/JCM.01465.
    PubMed     Abstract available

  33. YU LS, Rodriguez-Manzano J, Moser N, Moniri A, et al
    Rapid detection of azole-resistant Aspergillus fumigatus in clinical and environmental isolates using lab-on-a-chip diagnostic system.
    J Clin Microbiol. 2020 Sep 9. pii: JCM.00843-20. doi: 10.1128/JCM.00843.
    PubMed     Abstract available

    August 2020
  34. CATANZARO DG, Colman RE, Linger Y, Georghiou SB, et al
    Laboratory evaluation of a lateral-flow cell for molecular detection of first-line and second-line anti-tuberculosis drug resistance.
    J Clin Microbiol. 2020 Aug 19. pii: JCM.01417-20. doi: 10.1128/JCM.01417.
    PubMed     Abstract available

    July 2020
  35. SWEENEY EL, Lowry K, Ebeyan S, Lundgren M, et al
    Evaluation of the SpeeDx MG parC (beta) PCR assay for the rapid detection of Mycoplasma genitalium quinolone resistance-associated mutations.
    J Clin Microbiol. 2020 Jul 22. pii: JCM.01432-20. doi: 10.1128/JCM.01432.
    PubMed     Abstract available

  36. JOSEPH LA, Francois Watkins LK, Chen J, Tagg KA, et al
    Comparison of Molecular Subtyping and Antimicrobial Resistance Detection Methods Used in a Large Multi-State Outbreak of Extensively Drug-Resistant Campylobacter jejuni Infections Linked to Pet Store Puppies.
    J Clin Microbiol. 2020 Jul 22. pii: JCM.00771-20. doi: 10.1128/JCM.00771.
    PubMed     Abstract available

  37. HILMARSDOTTIR I, Arnardottir EM, Johannesdottir ER, Valsdottir F, et al
    Prevalence of Mycoplasma genitalium and antibiotic resistance-associated mutations in an Icelandic STI population, and comparison of the S-DiaMGTV and Aptima Mycoplasma genitalium assays for diagnosis.
    J Clin Microbiol. 2020 Jul 1. pii: JCM.01084-20. doi: 10.1128/JCM.01084.
    PubMed     Abstract available

    June 2020
  38. BURNARD D, Gore L, Henderson A, Ranasinghe A, et al
    Comparative genomics and antimicrobial resistance profiling of Elizabethkingia isolates reveals nosocomial transmission and in vitro susceptibility to fluoroquinolones, tetracyclines and trimethoprim-sulfamethoxazole.
    J Clin Microbiol. 2020 Jun 24. pii: JCM.00730-20. doi: 10.1128/JCM.00730.
    PubMed     Abstract available

  39. SOUTHON SB, Beres SB, Kachroo P, Ojeda Saavedra M, et al
    Population genomic molecular epidemiological study of macrolide resistant Streptococcus pyogenes in Iceland, 1995-2016: Identification of a large clonal population with a pbp2x mutation conferring reduced in vitro beta-lactam susceptibility.
    J Clin Microbiol. 2020 Jun 10. pii: JCM.00638-20. doi: 10.1128/JCM.00638.
    PubMed     Abstract available

  40. SWEENEY EL, Tickner J, Bletchly C, Nimmo GR, et al
    Genotyping of Mycoplasma genitalium suggests de novo acquisition of antimicrobial resistance, Queensland, Australia.
    J Clin Microbiol. 2020 Jun 3. pii: JCM.00641-20. doi: 10.1128/JCM.00641.
    PubMed     Abstract available

    April 2020
  41. FERREIRA I, Beisken S, Lueftinger L, Weinmaier T, et al
    Species Identification and Antibiotic Resistance Prediction by Analysis of Whole Genome Sequence Data Using ARESdb - An Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial.
    J Clin Microbiol. 2020 Apr 15. pii: JCM.00273-20. doi: 10.1128/JCM.00273.
    PubMed     Abstract available

  42. LEAL SM JR, Totten AH, Xiao L, Crabb DM, et al
    Evaluation of Commercial Molecular Diagnostic Methods for the Detection and Determination of Macrolide Resistance in Mycoplasma pneumoniae.
    J Clin Microbiol. 2020 Apr 8. pii: JCM.00242-20. doi: 10.1128/JCM.00242.
    PubMed     Abstract available

    January 2020
  43. GARGIS AS, Yoo BB, Lonsway DR, Anderson K, et al
    Difficult-to-Detect Staphylococcus aureus: mecA-positive Isolates Associated with Oxacillin and Cefoxitin False-Susceptible Results.
    J Clin Microbiol. 2020 Jan 29. pii: JCM.02038-19. doi: 10.1128/JCM.02038.
    PubMed     Abstract available

  44. PICHON M, Pichard B, Barrioz T, Plouzeau C, et al
    Diagnostic accuracy of a non-invasive test for the detection of Helicobacter pylori and resistance to clarithromycin in stool by Real-Time PCR Amplidiag((R)) H. pylori + ClariR assay.
    J Clin Microbiol. 2020 Jan 29. pii: JCM.01787-19. doi: 10.1128/JCM.01787.
    PubMed     Abstract available

  45. GREEN DA, Macesic N, Uhlemann AC, Lopez M, et al
    Evaluation of Calcium-Enhanced Media for Colistin Susceptibility Testing by Gradient Agar Diffusion and Broth Microdilution.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available

  46. BIAGI M, Tan X, Wu T, Jurkovic M, et al
    Activity of Potential Alternative Treatment Agents for Stenotrophomonas maltophilia Isolates Nonsusceptible to Levofloxacin and/or Trimethoprim-Sulfamethoxazole.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available

    October 2019
  47. MORRIS CP, Simner PJ
    Tailoring Antimicrobial Susceptibility Testing to Individual Species of Coagulase-Negative Staphylococci: Next up, Staphylococcus epidermidis.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01391-19. doi: 10.1128/JCM.01391.
    PubMed     Abstract available

    August 2019
  48. NG KCS, Supply P, Cobelens FGJ, Gaudin C, et al
    How well do routine molecular diagnostics detect rifampicin heteroresistance in Mycobacterium tuberculosis?
    J Clin Microbiol. 2019 Aug 14. pii: JCM.00717-19. doi: 10.1128/JCM.00717.
    PubMed     Abstract available

    July 2019
  49. WANG Q, Kontoyiannis DP, Li R, Chen W, et al
    A novel broad allele-specific Taqman real-time PCR method to detect triazole-resistant strains of Aspergillus fumigatus, even when in very low percentage of the triazole-resistant and -susceptible strain mixture.
    J Clin Microbiol. 2019 Jul 17. pii: JCM.00604-19. doi: 10.1128/JCM.00604.
    PubMed     Abstract available

    June 2019
  50. FU Y, Zeng Y, Chen T, Chen H, et al
    Characterization and Clinical Significance of Natural Variability in Hepatitis B Virus Reverse Transcriptase in Treatment-naive Chinese Patients by Sanger Sequencing and Next-generation Sequencing.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00119-19. doi: 10.1128/JCM.00119.
    PubMed     Abstract available

    May 2019
  51. NEZAMI BG, Jani M, Alouani D, Rhoads D, et al
    Helicobacter pylori Mutations Detected by Next-Generation Sequencing in Formalin-Fixed Paraffin Embedded Gastric Biopsies are Associated with Treatment Failure.
    J Clin Microbiol. 2019 May 8. pii: JCM.01834-18. doi: 10.1128/JCM.01834.
    PubMed     Abstract available

  52. LIMA A, Widen R, Vestal G, Uy D, et al
    A TaqMan Probe-based Real-Time PCR Assay for the Rapid Identification of the Emerging Multidrug-Resistant Candida auris on the BD MAX System.
    J Clin Microbiol. 2019 May 8. pii: JCM.01604-18. doi: 10.1128/JCM.01604.
    PubMed     Abstract available

    April 2019
  53. CHO SY, Lee DG, Kim WB, Chun HS, et al
    Epidemiology and antifungal susceptibility profile of Aspergillus species: comparison between environmental and clinical isolates from patients with hematologic malignancies.
    J Clin Microbiol. 2019 Apr 24. pii: JCM.02023-18. doi: 10.1128/JCM.02023.
    PubMed     Abstract available

    March 2019
  54. CHENG MP, Lawandi A, Lee TC, Dufresne PJ, et al
    Triazole Antifungal Susceptibility Patterns among Aspergillus species in Quebec, Canada.
    J Clin Microbiol. 2019 Mar 27. pii: JCM.00404-19. doi: 10.1128/JCM.00404.
    PubMed     Abstract available

  55. KUBANOV A, Solomka V, Plakhova X, Chestkov A, et al
    Summary and Trends of the Russian Gonococcal Antimicrobial Surveillance Programme, 2005-2016.
    J Clin Microbiol. 2019 Mar 20. pii: JCM.02024-18. doi: 10.1128/JCM.02024.
    PubMed     Abstract available

    February 2019
  56. HAN B, Parhy B, Zhou E, Hsieh D, et al
    In vitro Susceptibility of HCV Genotype 1 through 6 Clinical Isolates to the Pan-genotypic NS3/4A Inhibitor Voxilaprevir.
    J Clin Microbiol. 2019 Feb 6. pii: JCM.01844-18. doi: 10.1128/JCM.01844.
    PubMed     Abstract available

  57. KWON YJ, Shin JH, Byeon SA, Choi MJ, et al
    Candida auris Clinical Isolates from South Korea: Identification, Antifungal Susceptibility, and Genotyping.
    J Clin Microbiol. 2019 Feb 6. pii: JCM.01624-18. doi: 10.1128/JCM.01624.
    PubMed     Abstract available

  58. YAN Q, Wi YM, Thoendel MJ, Raval YS, et al
    Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

  59. NGUYEN M, Long SW, McDermott PF, Olsen RJ, et al
    Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

    December 2018
  60. OPOTA O, Zakham F, Mazza-Stalder J, Nicod L, et al
    Added-value of Xpert MTB/RIF Ultra for the diagnosis of pulmonary tuberculosis in a low prevalence setting.
    J Clin Microbiol. 2018 Dec 12. pii: JCM.01717-18. doi: 10.1128/JCM.01717.
    PubMed     Abstract available

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