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Influenza

Free Subscription Articles published in PLoS Comput Biol Retrieve available abstracts of 122 articles: HTML format

Single Articles

May 2025
1. POLCZ P, Reguly IZ, Tornai K, Juhasz J, et al
   Smart epidemic control: A hybrid model blending ODEs and agent-based simulations for optimal, real-world intervention planning.
   PLoS Comput Biol. 2025;21:e1013028.
   PubMed     Abstract available
   
   
   April 2025
2. WU L, Baker CM, Tierney N, Carville K, et al
   Quantifying the impact of contact tracing interview prioritisation strategies on disease transmission: A modelling study.
   PLoS Comput Biol. 2025;21:e1012906.
   PubMed     Abstract available
   
   
   
3. POZZATI G, Flores SC
   Combining flipped-classroom and spaced-repetition learning in a master-level bioinformatics course.
   PLoS Comput Biol. 2025;21:e1012863.
   PubMed     Abstract available
   
   
   
4. TEOH YC, Noor MS, Aghakhani S, Girton J, et al
   Viral escape-inspired framework for structure-guided dual bait protein biosensor design.
   PLoS Comput Biol. 2025;21:e1012964.
   PubMed     Abstract available
   
   
   
5. HODCROFT EB, Wohlfender MS, Neher RA, Riou J, et al
   Estimating Re and overdispersion in secondary cases from the size of identical sequence clusters of SARS-CoV-2.
   PLoS Comput Biol. 2025;21:e1012960.
   PubMed     Abstract available
   
   
   
6. GROTBERG JB, Romano F, Grotberg JC
   Flow mechanisms of the air-blood barrier.
   PLoS Comput Biol. 2025;21:e1012917.
   PubMed     Abstract available
   
   
   
7. FERRAZ MVF, Adan WCS, Lima TE, Santos AJC, et al
   Design of nanobody targeting SARS-CoV-2 spike glycoprotein using CDR-grafting assisted by molecular simulation and machine learning.
   PLoS Comput Biol. 2025;21:e1012921.
   PubMed     Abstract available
   
   
   March 2025
8. EALES O, Shearer FM, McCaw JM
   How immunity shapes the long-term dynamics of influenza H3N2.
   PLoS Comput Biol. 2025;21:e1012893.
   PubMed     Abstract available
   
   
   
9. AMARAL AVR, Wolffram D, Moraga P, Bracher J, et al
   Post-processing and weighted combination of infectious disease nowcasts.
   PLoS Comput Biol. 2025;21:e1012836.
   PubMed     Abstract available
   
   
   
10. VON HOENE E, Roess A, Kavak H, Anderson T, et al
    Synthetic population generation with public health characteristics for spatial agent-based models.
    PLoS Comput Biol. 2025;21:e1012439.
    PubMed     Abstract available
    
    
    
11. WANG M, Patsenker J, Li H, Kluger Y, et al
    Supervised fine-tuning of pre-trained antibody language models improves antigen specificity prediction.
    PLoS Comput Biol. 2025;21:e1012153.
    PubMed     Abstract available
    
    
    February 2025
12. BANHOLZER N, Middelkoop K, Leukes J, Weingartner E, et al
    Estimating Mycobacterium tuberculosis transmission in a South African clinic: Spatiotemporal model based on person movements.
    PLoS Comput Biol. 2025;21:e1012823.
    PubMed     Abstract available
    
    
    
13. LOMBARD B, Moultrie H, Pulliam JRC, van Schalkwyk C, et al
    Simulation-based validation of a method to detect changes in SARS-CoV-2 reinfection risk.
    PLoS Comput Biol. 2025;21:e1012792.
    PubMed     Abstract available
    
    
    
14. LI W, Chen X, Liu S, Zhang C, et al
    Using a multi-strain infectious disease model with physical information neural networks to study the time dependence of SARS-CoV-2 variants of concern.
    PLoS Comput Biol. 2025;21:e1012778.
    PubMed     Abstract available
    
    
    
15. SIMPSON J, Kasson PM
    Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses.
    PLoS Comput Biol. 2025;21:e1012812.
    PubMed     Abstract available
    
    
    
16. SHEN X, Rumack A, Wilder B, Tibshirani RJ, et al
    Nowcasting reported covid-19 hospitalizations using de-identified, aggregated medical insurance claims data.
    PLoS Comput Biol. 2025;21:e1012717.
    PubMed     Abstract available
    
    
    
17. GAO S, Chakraborty AK, Greiner R, Lewis MA, et al
    Early detection of disease outbreaks and non-outbreaks using incidence data: A framework using feature-based time series classification and machine learning.
    PLoS Comput Biol. 2025;21:e1012782.
    PubMed     Abstract available
    
    
    
18. CASABURI P, Dall'Amico L, Gozzi N, Kalimeri K, et al
    Resilience of mobility network to dynamic population response across COVID-19 interventions: Evidences from Chile.
    PLoS Comput Biol. 2025;21:e1012802.
    PubMed     Abstract available
    
    
    
19. ZHAN X, Xu Q, Zheng Y, Lu G, et al
    Reliability-enhanced data cleaning in biomedical machine learning using inductive conformal prediction.
    PLoS Comput Biol. 2025;21:e1012803.
    PubMed     Abstract available
    
    
    January 2025
20. BADROU A, Mariano CA, Ramirez GO, Shankel M, et al
    Towards constructing a generalized structural 3D breathing human lung model based on experimental volumes, pressures, and strains.
    PLoS Comput Biol. 2025;21:e1012680.
    PubMed     Abstract available
    
    
    
21. BOTTCHER L, D'Orsogna MR, Chou T
    Aggregating multiple test results to improve medical decision-making.
    PLoS Comput Biol. 2025;21:e1012749.
    PubMed     Abstract available
    
    
    December 2024
22. ABRAHAM AA, Tan ZC, Shrestha P, Bozich ER, et al
    A multivalent binding model infers antibody Fc species from systems serology.
    PLoS Comput Biol. 2024;20:e1012663.
    PubMed     Abstract available
    
    
    
23. ZAARAOUI H, Schumer C, Duval X, Hoen B, et al
    Modelling the effectiveness of antiviral treatment strategies to prevent household transmission of acute respiratory viruses.
    PLoS Comput Biol. 2024;20:e1012573.
    PubMed     Abstract available
    
    
    
24. CALMON L, Colosi E, Bassignana G, Barrat A, et al
    Preserving friendships in school contacts: An algorithm to construct synthetic temporal networks for epidemic modelling.
    PLoS Comput Biol. 2024;20:e1012661.
    PubMed     Abstract available
    
    
    
25. FAJARDO-FONTIVEROS O, Mattei M, Burgio G, Granell C, et al
    Machine learning mathematical models for incidence estimation during pandemics.
    PLoS Comput Biol. 2024;20:e1012687.
    PubMed     Abstract available
    
    
    
26. ZHANG XY, Yu LL, Wang WY, Sun GQ, et al
    Estimating the time-varying effective reproduction number via Cycle Threshold-based Transformer.
    PLoS Comput Biol. 2024;20:e1012694.
    PubMed     Abstract available
    
    
    
27. ZUNKER H, Schmieding R, Kerkmann D, Schengen A, et al
    Novel travel time aware metapopulation models and multi-layer waning immunity for late-phase epidemic and endemic scenarios.
    PLoS Comput Biol. 2024;20:e1012630.
    PubMed     Abstract available
    
    
    
28. CHERIAN P, Kshirsagar J, Neekhra B, Deshkar G, et al
    BharatSim: An agent-based modelling framework for India.
    PLoS Comput Biol. 2024;20:e1012682.
    PubMed     Abstract available
    
    
    November 2024
29. SHE B, Smith RL, Pytlarz I, Sundaram S, et al
    A framework for counterfactual analysis, strategy evaluation, and control of epidemics using reproduction number estimates.
    PLoS Comput Biol. 2024;20:e1012569.
    PubMed     Abstract available
    
    
    October 2024
30. XIA F, Xiao Y, Ma J
    The optimal spatially-dependent control measures to effectively and economically eliminate emerging infectious diseases.
    PLoS Comput Biol. 2024;20:e1012498.
    PubMed     Abstract available
    
    
    
31. MATHEBULA D, Amankwah A, Amouzouvi K, Assamagan KA, et al
    Modelling the impact of vaccination on COVID-19 in African countries.
    PLoS Comput Biol. 2024;20:e1012456.
    PubMed     Abstract available
    
    
    
32. ANDRONICO A, Paireau J, Cauchemez S
    Integrating information from historical data into mechanistic models for influenza forecasting.
    PLoS Comput Biol. 2024;20:e1012523.
    PubMed     Abstract available
    
    
    September 2024
33. JIANG J, Meng X, Wang Y, Zhuang Z, et al
    Effect of aberrant fructose metabolism following SARS-CoV-2 infection on colorectal cancer patients' poor prognosis.
    PLoS Comput Biol. 2024;20:e1012412.
    PubMed     Abstract available
    
    
    
34. ABOUSAMRA E, Figgins M, Bedford T
    Fitness models provide accurate short-term forecasts of SARS-CoV-2 variant frequency.
    PLoS Comput Biol. 2024;20:e1012443.
    PubMed     Abstract available
    
    
    
35. OLIVEIRA ROSTER KI, Kissler SM, Omoregie E, Wang JC, et al
    Surveillance strategies for the detection of new pathogen variants across epidemiological contexts.
    PLoS Comput Biol. 2024;20:e1012416.
    PubMed     Abstract available
    
    
    
36. MILLEVOI C, Pasetto D, Ferronato M
    A Physics-Informed Neural Network approach for compartmental epidemiological models.
    PLoS Comput Biol. 2024;20:e1012387.
    PubMed     Abstract available
    
    
    
37. LI K, Chaguza C, Stamp J, Chew YT, et al
    Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.
    PLoS Comput Biol. 2024;20:e1012469.
    PubMed     Abstract available
    
    
    
38. TANG B, Ma K, Liu Y, Wang X, et al
    Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: A mechanistic and deep learning study.
    PLoS Comput Biol. 2024;20:e1012497.
    PubMed     Abstract available
    
    
    
39. KUMAGAI Y
    BootCellNet, a resampling-based procedure, promotes unsupervised identification of cell populations via robust inference of gene regulatory networks.
    PLoS Comput Biol. 2024;20:e1012480.
    PubMed     Abstract available
    
    
    
40. KEELING MJ, Dyson L
    A retrospective assessment of forecasting the peak of the SARS-CoV-2 Omicron BA.1 wave in England.
    PLoS Comput Biol. 2024;20:e1012452.
    PubMed     Abstract available
    
    
    August 2024
41. BOUROS I, Hill EM, Keeling MJ, Moore S, et al
    Prioritising older individuals for COVID-19 booster vaccination leads to optimal public health outcomes in a range of socio-economic settings.
    PLoS Comput Biol. 2024;20:e1012309.
    PubMed     Abstract available
    
    
    
42. SAAD-ROY CM, Morris SE, Boots M, Baker RE, et al
    Impact of waning immunity against SARS-CoV-2 severity exacerbated by vaccine hesitancy.
    PLoS Comput Biol. 2024;20:e1012211.
    PubMed     Abstract available
    
    
    
43. LIN J, Aprahamian H, Golovko G
    A proactive/reactive mass screening approach with uncertain symptomatic cases.
    PLoS Comput Biol. 2024;20:e1012308.
    PubMed     Abstract available
    
    
    
44. BOLAJI AJ, Duggan AT
    In silico analyses identify sequence contamination thresholds for Nanopore-generated SARS-CoV-2 sequences.
    PLoS Comput Biol. 2024;20:e1011539.
    PubMed     Abstract available
    
    
    July 2024
45. LAU YC, Shan S, Wang D, Chen D, et al
    Forecasting of influenza activity and associated hospital admission burden and estimating the impact of COVID-19 pandemic on 2019/20 winter season in Hong Kong.
    PLoS Comput Biol. 2024;20:e1012311.
    PubMed     Abstract available
    
    
    
46. DOYLE NJ, Cumming F, Thompson RN, Tildesley MJ, et al
    When should lockdown be implemented? Devising cost-effective strategies for managing epidemics amid vaccine uncertainty.
    PLoS Comput Biol. 2024;20:e1012010.
    PubMed     Abstract available
    
    
    
47. ROSENBLATT E, Cook JD, DiRenzo GV, Grant EHC, et al
    Epidemiological modeling of SARS-CoV-2 in white-tailed deer (Odocoileus virginianus) reveals conditions for introduction and widespread transmission.
    PLoS Comput Biol. 2024;20:e1012263.
    PubMed     Abstract available
    
    
    
48. GABERNET G, Marquez S, Bjornson R, Peltzer A, et al
    nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
    PLoS Comput Biol. 2024;20:e1012265.
    PubMed     Abstract available
    
    
    June 2024
49. HILL EM, Petrou S, de Lusignan S, Yonova I, et al
    Correction: Seasonal influenza: Modelling approaches to capture immunity propagation.
    PLoS Comput Biol. 2024;20:e1012213.
    PubMed     Abstract available
    
    
    
50. ROJAS CHAVEZ RA, Fili M, Han C, Rahman SA, et al
    Mapping the Evolutionary Space of SARS-CoV-2 Variants to Anticipate Emergence of Subvariants Resistant to COVID-19 Therapeutics.
    PLoS Comput Biol. 2024;20:e1012215.
    PubMed     Abstract available
    
    
    
51. SHUBIN M, Brustad HK, Midtbo JE, Gunther F, et al
    The influence of cross-border mobility on the COVID-19 epidemic in Nordic countries.
    PLoS Comput Biol. 2024;20:e1012182.
    PubMed     Abstract available
    
    
    
52. SALWIG S, Drefs J, Lucke J
    Zero-shot denoising of microscopy images recorded at high-resolution limits.
    PLoS Comput Biol. 2024;20:e1012192.
    PubMed     Abstract available
    
    
    May 2024
53. HLADISH TJ, Pillai AN, Pearson CAB, Toh KB, et al
    Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.
    PLoS Comput Biol. 2024;20:e1012128.
    PubMed     Abstract available
    
    
    
54. LOPEZ VK, Cramer EY, Pagano R, Drake JM, et al
    Challenges of COVID-19 Case Forecasting in the US, 2020-2021.
    PLoS Comput Biol. 2024;20:e1011200.
    PubMed     Abstract available
    
    
    
55. ASPLIN P, Keeling MJ, Mancy R, Hill EM, et al
    Epidemiological and health economic implications of symptom propagation in respiratory pathogens: A mathematical modelling investigation.
    PLoS Comput Biol. 2024;20:e1012096.
    PubMed     Abstract available
    
    
    
56. TRINITY L, Stege U, Jabbari H
    Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot.
    PLoS Comput Biol. 2024;20:e1011787.
    PubMed     Abstract available
    
    
    
57. FOSTER ZSL, Tupper AS, Press CM, Grunwald NJ, et al
    Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data.
    PLoS Comput Biol. 2024;20:e1012139.
    PubMed     Abstract available
    
    
    
58. MASSEY A, Boennec C, Restrepo-Ortiz CX, Blanchet C, et al
    Real-time forecasting of COVID-19-related hospital strain in France using a non-Markovian mechanistic model.
    PLoS Comput Biol. 2024;20:e1012124.
    PubMed     Abstract available
    
    
    
59. RAWSON T, Hinsley W, Sonabend R, Semenova E, et al
    The impact of health inequity on spatial variation of COVID-19 transmission in England.
    PLoS Comput Biol. 2024;20:e1012141.
    PubMed     Abstract available
    
    
    April 2024
60. BENISTON E, Skittrall JP
    Locations and structures of influenza A virus packaging-associated signals and other functional elements via an in silico pipeline for predicting constrained features in RNA viruses.
    PLoS Comput Biol. 2024;20:e1012009.
    PubMed     Abstract available
    
    
    
61. LISON A, Abbott S, Huisman J, Stadler T, et al
    Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates.
    PLoS Comput Biol. 2024;20:e1012021.
    PubMed     Abstract available
    
    
    
62. BOUMAN JA, Hauser A, Grimm SL, Wohlfender M, et al
    Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models.
    PLoS Comput Biol. 2024;20:e1011575.
    PubMed     Abstract available
    
    
    March 2024
63. SHAO Y, Magee AF, Vasylyeva TI, Suchard MA, et al
    Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models.
    PLoS Comput Biol. 2024;20:e1011640.
    PubMed     Abstract available
    
    
    
64. JIJON S, Czuppon P, Blanquart F, Debarre F, et al
    Using early detection data to estimate the date of emergence of an epidemic outbreak.
    PLoS Comput Biol. 2024;20:e1011934.
    PubMed     Abstract available
    
    
    
65. HASSE T, Mantei E, Shahoei R, Pawnikar S, et al
    Mechanistic insights into ligand dissociation from the SARS-CoV-2 spike glycoprotein.
    PLoS Comput Biol. 2024;20:e1011955.
    PubMed     Abstract available
    
    
    
66. PUNG R, Russell TW, Kucharski AJ
    Detecting changes in generation and serial intervals under varying pathogen biology, contact patterns and outbreak response.
    PLoS Comput Biol. 2024;20:e1011967.
    PubMed     Abstract available
    
    
    
67. ATAMER BALKAN B, Chang Y, Sparnaaij M, Wouda B, et al
    The multi-dimensional challenges of controlling respiratory virus transmission in indoor spaces: Insights from the linkage of a microscopic pedestrian simulation and SARS-CoV-2 transmission model.
    PLoS Comput Biol. 2024;20:e1011956.
    PubMed     Abstract available
    
    
    January 2024
68. CHAN LYH, Ro G, Midtbo JE, Di Ruscio F, et al
    Modeling geographic vaccination strategies for COVID-19 in Norway.
    PLoS Comput Biol. 2024;20:e1011426.
    PubMed     Abstract available
    
    
    
69. SHIN B, An G, Cockrell RC
    Examining B-cell dynamics and responsiveness in different inflammatory milieus using an agent-based model.
    PLoS Comput Biol. 2024;20:e1011776.
    PubMed     Abstract available
    
    
    
70. GRUNNILL M, Arino J, McCarthy Z, Bragazzi NL, et al
    Modelling disease mitigation at mass gatherings: A case study of COVID-19 at the 2022 FIFA World Cup.
    PLoS Comput Biol. 2024;20:e1011018.
    PubMed     Abstract available
    
    
    
71. PLANK MJ, Watson L, Maclaren OJ
    Near-term forecasting of Covid-19 cases and hospitalisations in Aotearoa New Zealand.
    PLoS Comput Biol. 2024;20:e1011752.
    PubMed     Abstract available
    
    
    
72. RAMACHANDRAN A, Lumetta SS, Chen D
    PandoGen: Generating complete instances of future SARS-CoV-2 sequences using Deep Learning.
    PLoS Comput Biol. 2024;20:e1011790.
    PubMed     Abstract available
    
    
    
73. VAN BOVEN M, van Dorp CH, Westerhof I, Jaddoe V, et al
    Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study.
    PLoS Comput Biol. 2024;20:e1011832.
    PubMed     Abstract available
    
    
    
74. LAMB KD, Luka MM, Saathoff M, Orton RJ, et al
    Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.
    PLoS Comput Biol. 2024;20:e1011795.
    PubMed     Abstract available
    
    
    December 2023
75. MOREL JD, Morel JM, Alvarez L
    Time warping between main epidemic time series in epidemiological surveillance.
    PLoS Comput Biol. 2023;19:e1011757.
    PubMed     Abstract available
    
    
    
76. JOHNSON KE, Pasco R, Woody S, Lachmann M, et al
    Optimizing COVID-19 testing strategies on college campuses: Evaluation of the health and economic costs.
    PLoS Comput Biol. 2023;19:e1011715.
    PubMed     Abstract available
    
    
    
77. ISLAM MA, Getz M, Macklin P, Ford Versypt AN, et al
    An agent-based modeling approach for lung fibrosis in response to COVID-19.
    PLoS Comput Biol. 2023;19:e1011741.
    PubMed     Abstract available
    
    
    November 2023
78. ALAHAKOON P, Taylor PG, McCaw JM
    How effective were Australian Quarantine Stations in mitigating transmission aboard ships during the influenza pandemic of 1918-19?
    PLoS Comput Biol. 2023;19:e1011656.
    PubMed     Abstract available
    
    
    
79. DRAKE JM, Handel A, Marty E, O'Dea EB, et al
    A data-driven semi-parametric model of SARS-CoV-2 transmission in the United States.
    PLoS Comput Biol. 2023;19:e1011610.
    PubMed     Abstract available
    
    
    
80. WOOD AJ, Sanchez AR, Bessell PR, Wightman R, et al
    Assessing the importance of demographic risk factors across two waves of SARS-CoV-2 using fine-scale case data.
    PLoS Comput Biol. 2023;19:e1011611.
    PubMed     Abstract available
    
    
    
81. BROCKHAUS EK, Wolffram D, Stadler T, Osthege M, et al
    Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany.
    PLoS Comput Biol. 2023;19:e1011653.
    PubMed     Abstract available
    
    
    
82. VAN DER ROEST BR, Bootsma MCJ, Fischer EAJ, Klinkenberg D, et al
    A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms.
    PLoS Comput Biol. 2023;19:e1010928.
    PubMed     Abstract available
    
    
    
83. WARD T, Morris M, Gelman A, Carpenter B, et al
    Bayesian spatial modelling of localised SARS-CoV-2 transmission through mobility networks across England.
    PLoS Comput Biol. 2023;19:e1011580.
    PubMed     Abstract available
    
    
    October 2023
84. HE M, Tang S, Xiao Y
    Combining the dynamic model and deep neural networks to identify the intensity of interventions during COVID-19 pandemic.
    PLoS Comput Biol. 2023;19:e1011535.
    PubMed     Abstract available
    
    
    September 2023
85. ZHOU Z, Li D, Zhao Z, Shi S, et al
    Dynamical modelling of viral infection and cooperative immune protection in COVID-19 patients.
    PLoS Comput Biol. 2023;19:e1011383.
    PubMed     Abstract available
    
    
    
86. ZHANG K, Xia Z, Huang S, Sun GQ, et al
    Evaluating the impact of test-trace-isolate for COVID-19 management and alternative strategies.
    PLoS Comput Biol. 2023;19:e1011423.
    PubMed     Abstract available
    
    
    
87. MUNDAY JD, Abbott S, Meakin S, Funk S, et al
    Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England.
    PLoS Comput Biol. 2023;19:e1011453.
    PubMed     Abstract available
    
    
    
88. OVERTON CE, Abbott S, Christie R, Cumming F, et al
    Nowcasting the 2022 mpox outbreak in England.
    PLoS Comput Biol. 2023;19:e1011463.
    PubMed     Abstract available
    
    
    
89. WANG Z, Wu P, Wang L, Li B, et al
    Marginal effects of public health measures and COVID-19 disease burden in China: A large-scale modelling study.
    PLoS Comput Biol. 2023;19:e1011492.
    PubMed     Abstract available
    
    
    August 2023
90. MORRIS M, Hayes P, Cox IJ, Lampos V, et al
    Neural network models for influenza forecasting with associated uncertainty using Web search activity trends.
    PLoS Comput Biol. 2023;19:e1011392.
    PubMed     Abstract available
    
    
    
91. CLAIRON Q, Prague M, Planas D, Bruel T, et al
    Modeling the kinetics of the neutralizing antibody response against SARS-CoV-2 variants after several administrations of Bnt162b2.
    PLoS Comput Biol. 2023;19:e1011282.
    PubMed     Abstract available
    
    
    
92. WOLFFRAM D, Abbott S, An der Heiden M, Funk S, et al
    Collaborative nowcasting of COVID-19 hospitalization incidences in Germany.
    PLoS Comput Biol. 2023;19:e1011394.
    PubMed     Abstract available
    
    
    
93. RAACH B, Bundgaard N, Haase MJ, Starruss J, et al
    Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium.
    PLoS Comput Biol. 2023;19:e1011356.
    PubMed     Abstract available
    
    
    
94. YEDIDYA Y, Davis D, Drier Y
    SARS-CoV-2 infection perturbs enhancer mediated transcriptional regulation of key pathways.
    PLoS Comput Biol. 2023;19:e1011397.
    PubMed     Abstract available
    
    
    
95. MARC A, Marlin R, Donati F, Prague M, et al
    Impact of variants of concern on SARS-CoV-2 viral dynamics in non-human primates.
    PLoS Comput Biol. 2023;19:e1010721.
    PubMed     Abstract available
    
    
    
96. BOSSE NI, Abbott S, Cori A, van Leeuwen E, et al
    Scoring epidemiological forecasts on transformed scales.
    PLoS Comput Biol. 2023;19:e1011393.
    PubMed     Abstract available
    
    
    
97. NASH RK, Bhatt S, Cori A, Nouvellet P, et al
    Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool.
    PLoS Comput Biol. 2023;19:e1011439.
    PubMed     Abstract available
    
    
    July 2023
98. SERVADIO JL, Thai PQ, Choisy M, Boni MF, et al
    Repeatability and timing of tropical influenza epidemics.
    PLoS Comput Biol. 2023;19:e1011317.
    PubMed     Abstract available
    
    
    
99. LOU S, Yang M, Li T, Zhao W, et al
    Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes.
    PLoS Comput Biol. 2023;19:e1011222.
    PubMed     Abstract available
    
    
    
100. ANDRESS C, Kappel K, Villena ME, Cuperlovic-Culf M, et al
     DAPTEV: Deep aptamer evolutionary modelling for COVID-19 drug design.
     PLoS Comput Biol. 2023;19:e1010774.
     PubMed     Abstract available
     
     
     
101. PARAG KV, Obolski U
     Risk averse reproduction numbers improve resurgence detection.
     PLoS Comput Biol. 2023;19:e1011332.
     PubMed     Abstract available
     
     
     
102. YANG W, Shaman J
     Development of Accurate Long-lead COVID-19 Forecast.
     PLoS Comput Biol. 2023;19:e1011278.
     PubMed     Abstract available
     
     
     June 2023
103. FOX SJ, Javan E, Pasco R, Gibson GC, et al
     Disproportionate impacts of COVID-19 in a large US city.
     PLoS Comput Biol. 2023;19:e1011149.
     PubMed     Abstract available
     
     
     
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