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Amedeo COVID-19 (formerly 2019-nCoV)

Weekly publication summary


  Influenza

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Articles published in PLoS Comput Biol

Retrieve available abstracts of 43 articles:
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Single Articles


    February 2020
  1. REIMERING S, Munoz S, McHardy AC
    Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic.
    PLoS Comput Biol. 2020;16:e1007101.
    PubMed     Text format     Abstract available


    December 2019
  2. ENDO A, Uchida M, Kucharski AJ, Funk S, et al
    Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15.
    PLoS Comput Biol. 2019;15:e1007589.
    PubMed     Text format     Abstract available


    November 2019
  3. REICH NG, McGowan CJ, Yamana TK, Tushar A, et al
    Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
    PLoS Comput Biol. 2019;15:e1007486.
    PubMed     Text format     Abstract available


  4. RANGARAJAN P, Mody SK, Marathe M
    Forecasting dengue and influenza incidences using a sparse representation of Google trends, electronic health records, and time series data.
    PLoS Comput Biol. 2019;15:e1007518.
    PubMed     Text format     Abstract available


    October 2019
  5. HILL EM, Petrou S, de Lusignan S, Yonova I, et al
    Seasonal influenza: Modelling approaches to capture immunity propagation.
    PLoS Comput Biol. 2019;15:e1007096.
    PubMed     Text format     Abstract available


  6. PRIEDHORSKY R, Daughton AR, Barnard M, O'Connell F, et al
    Estimating influenza incidence using search query deceptiveness and generalized ridge regression.
    PLoS Comput Biol. 2019;15:e1007165.
    PubMed     Text format     Abstract available


    September 2019
  7. VENKATRAMANAN S, Chen J, Fadikar A, Gupta S, et al
    Optimizing spatial allocation of seasonal influenza vaccine under temporal constraints.
    PLoS Comput Biol. 2019;15:e1007111.
    PubMed     Text format     Abstract available


  8. BECKER AD, Wesolowski A, Bjornstad ON, Grenfell BT, et al
    Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination.
    PLoS Comput Biol. 2019;15:e1007305.
    PubMed     Text format     Abstract available


    August 2019
  9. HAY JA, Laurie K, White M, Riley S, et al
    Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets.
    PLoS Comput Biol. 2019;15:e1007294.
    PubMed     Text format     Abstract available


  10. YANG J, Muller NF, Bouckaert R, Xu B, et al
    Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration.
    PLoS Comput Biol. 2019;15:e1007189.
    PubMed     Text format     Abstract available


  11. KANDULA S, Shaman J
    Reappraising the utility of Google Flu Trends.
    PLoS Comput Biol. 2019;15:e1007258.
    PubMed     Text format     Abstract available


    May 2019
  12. BEN-NUN M, Riley P, Turtle J, Bacon DP, et al
    Forecasting national and regional influenza-like illness for the USA.
    PLoS Comput Biol. 2019;15:e1007013.
    PubMed     Text format     Abstract available


    April 2019
  13. LASKE T, Bachmann M, Dostert M, Karlas A, et al
    Model-based analysis of influenza A virus replication in genetically engineered cell lines elucidates the impact of host cell factors on key kinetic parameters of virus growth.
    PLoS Comput Biol. 2019;15:e1006944.
    PubMed     Text format     Abstract available


  14. KALIMERI K, Delfino M, Cattuto C, Perrotta D, et al
    Unsupervised extraction of epidemic syndromes from participatory influenza surveillance self-reported symptoms.
    PLoS Comput Biol. 2019;15:e1006173.
    PubMed     Text format     Abstract available


  15. MENG H, Yaari G, Bolen CR, Avey S, et al
    Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE).
    PLoS Comput Biol. 2019;15:e1006899.
    PubMed     Text format     Abstract available


    February 2019
  16. KRAMER SC, Shaman J
    Development and validation of influenza forecasting for 64 temperate and tropical countries.
    PLoS Comput Biol. 2019;15:e1006742.
    PubMed     Text format     Abstract available


  17. RUDIGER D, Kupke SY, Laske T, Zmora P, et al
    Multiscale modeling of influenza A virus replication in cell cultures predicts infection dynamics for highly different infection conditions.
    PLoS Comput Biol. 2019;15:e1006819.
    PubMed     Text format     Abstract available


  18. OSTHUS D, Daughton AR, Priedhorsky R
    Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited.
    PLoS Comput Biol. 2019;15:e1006599.
    PubMed     Text format     Abstract available


  19. PEI S, Cane MA, Shaman J
    Predictability in process-based ensemble forecast of influenza.
    PLoS Comput Biol. 2019;15:e1006783.
    PubMed     Text format     Abstract available


    January 2019
  20. MAJARIAN TD, Murphy RF, Lakdawala SS
    Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization.
    PLoS Comput Biol. 2019;15:e1006199.
    PubMed     Text format     Abstract available


  21. YAN AWC, Zaloumis SG, Simpson JA, McCaw JM, et al
    Sequential infection experiments for quantifying innate and adaptive immunity during influenza infection.
    PLoS Comput Biol. 2019;15:e1006568.
    PubMed     Text format     Abstract available


  22. HAW DJ, Cummings DAT, Lessler J, Salje H, et al
    Differential mobility and local variation in infection attack rate.
    PLoS Comput Biol. 2019;15:e1006600.
    PubMed     Text format     Abstract available


    November 2018
  23. VOLZ EM, Siveroni I
    Bayesian phylodynamic inference with complex models.
    PLoS Comput Biol. 2018;14:e1006546.
    PubMed     Text format     Abstract available


    October 2018
  24. CHAKRABORTY P, Lewis B, Eubank S, Brownstein JS, et al
    What to know before forecasting the flu.
    PLoS Comput Biol. 2018;14:e1005964.
    PubMed     Text format    


    September 2018
  25. HILL EM, House T, Dhingra MS, Kalpravidh W, et al
    The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh.
    PLoS Comput Biol. 2018;14:e1006439.
    PubMed     Text format     Abstract available


  26. ERTEM Z, Raymond D, Meyers LA
    Optimal multi-source forecasting of seasonal influenza.
    PLoS Comput Biol. 2018;14:e1006236.
    PubMed     Text format     Abstract available


    August 2018
  27. COPE RC, Ross JV, Chilver M, Stocks NP, et al
    Characterising seasonal influenza epidemiology using primary care surveillance data.
    PLoS Comput Biol. 2018;14:e1006377.
    PubMed     Text format     Abstract available


    June 2018
  28. BROOKS LC, Farrow DC, Hyun S, Tibshirani RJ, et al
    Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions.
    PLoS Comput Biol. 2018;14:e1006134.
    PubMed     Text format     Abstract available


    March 2018
  29. SAMBATURU N, Mukherjee S, Lopez-Garcia M, Molina-Paris C, et al
    Role of genetic heterogeneity in determining the epidemiological severity of H1N1 influenza.
    PLoS Comput Biol. 2018;14:e1006069.
    PubMed     Text format     Abstract available


  30. LEE EC, Arab A, Goldlust SM, Viboud C, et al
    Deploying digital health data to optimize influenza surveillance at national and local scales.
    PLoS Comput Biol. 2018;14:e1006020.
    PubMed     Text format     Abstract available


    February 2018
  31. THOMPSON RN, Gilligan CA, Cunniffe NJ
    Control fast or control smart: When should invading pathogens be controlled?
    PLoS Comput Biol. 2018;14:e1006014.
    PubMed     Text format     Abstract available


  32. RAY EL, Reich NG
    Prediction of infectious disease epidemics via weighted density ensembles.
    PLoS Comput Biol. 2018;14:e1005910.
    PubMed     Text format     Abstract available


    November 2017
  33. SHAMAN J, Kandula S, Yang W, Karspeck A, et al
    The use of ambient humidity conditions to improve influenza forecast.
    PLoS Comput Biol. 2017;13:e1005844.
    PubMed     Text format     Abstract available


  34. YAMANA TK, Kandula S, Shaman J
    Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States.
    PLoS Comput Biol. 2017;13:e1005801.
    PubMed     Text format     Abstract available


  35. VAN LEEUWEN E, Klepac P, Thorrington D, Pebody R, et al
    fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks.
    PLoS Comput Biol. 2017;13:e1005838.
    PubMed     Text format     Abstract available


    October 2017
  36. FOX SJ, Miller JC, Meyers LA
    Seasonality in risk of pandemic influenza emergence.
    PLoS Comput Biol. 2017;13:e1005749.
    PubMed     Text format     Abstract available


    June 2017
  37. DORRATOLTAJ N, Marathe A, Lewis BL, Swarup S, et al
    Epidemiological and economic impact of pandemic influenza in Chicago: Priorities for vaccine interventions.
    PLoS Comput Biol. 2017;13:e1005521.
    PubMed     Text format     Abstract available


    February 2017
  38. CHARU V, Zeger S, Gog J, Bjornstad ON, et al
    Human mobility and the spatial transmission of influenza in the United States.
    PLoS Comput Biol. 2017;13:e1005382.
    PubMed     Text format     Abstract available


  39. MAGEE D, Suchard MA, Scotch M
    Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.
    PLoS Comput Biol. 2017;13:e1005389.
    PubMed     Text format     Abstract available


  40. WON M, Marques-Pita M, Louro C, Goncalves-Sa J, et al
    Early and Real-Time Detection of Seasonal Influenza Onset.
    PLoS Comput Biol. 2017;13:e1005330.
    PubMed     Text format     Abstract available


    December 2016
  41. SUBRAMANIAN R, Graham AL, Grenfell BT, Arinaminpathy N, et al
    Universal or Specific? A Modeling-Based Comparison of Broad-Spectrum Influenza Vaccines against Conventional, Strain-Matched Vaccines.
    PLoS Comput Biol. 2016;12:e1005204.
    PubMed     Text format     Abstract available


    November 2016
  42. YANG W, Olson DR, Shaman J
    Forecasting Influenza Outbreaks in Boroughs and Neighborhoods of New York City.
    PLoS Comput Biol. 2016;12:e1005201.
    PubMed     Text format     Abstract available


    October 2016
  43. SCHELKER M, Mair CM, Jolmes F, Welke RW, et al
    Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency.
    PLoS Comput Biol. 2016;12:e1005075.
    PubMed     Text format     Abstract available


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