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Articles published in PLoS Comput Biol

Retrieve available abstracts of 33 articles:
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Single Articles


    August 2019
  1. YANG J, Muller NF, Bouckaert R, Xu B, et al
    Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration.
    PLoS Comput Biol. 2019;15:e1007189.
    PubMed     Text format     Abstract available


    May 2019
  2. BEN-NUN M, Riley P, Turtle J, Bacon DP, et al
    Forecasting national and regional influenza-like illness for the USA.
    PLoS Comput Biol. 2019;15:e1007013.
    PubMed     Text format     Abstract available


    April 2019
  3. LASKE T, Bachmann M, Dostert M, Karlas A, et al
    Model-based analysis of influenza A virus replication in genetically engineered cell lines elucidates the impact of host cell factors on key kinetic parameters of virus growth.
    PLoS Comput Biol. 2019;15:e1006944.
    PubMed     Text format     Abstract available


  4. KALIMERI K, Delfino M, Cattuto C, Perrotta D, et al
    Unsupervised extraction of epidemic syndromes from participatory influenza surveillance self-reported symptoms.
    PLoS Comput Biol. 2019;15:e1006173.
    PubMed     Text format     Abstract available


  5. MENG H, Yaari G, Bolen CR, Avey S, et al
    Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE).
    PLoS Comput Biol. 2019;15:e1006899.
    PubMed     Text format     Abstract available


    February 2019
  6. KRAMER SC, Shaman J
    Development and validation of influenza forecasting for 64 temperate and tropical countries.
    PLoS Comput Biol. 2019;15:e1006742.
    PubMed     Text format     Abstract available


  7. RUDIGER D, Kupke SY, Laske T, Zmora P, et al
    Multiscale modeling of influenza A virus replication in cell cultures predicts infection dynamics for highly different infection conditions.
    PLoS Comput Biol. 2019;15:e1006819.
    PubMed     Text format     Abstract available


  8. OSTHUS D, Daughton AR, Priedhorsky R
    Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited.
    PLoS Comput Biol. 2019;15:e1006599.
    PubMed     Text format     Abstract available


  9. PEI S, Cane MA, Shaman J
    Predictability in process-based ensemble forecast of influenza.
    PLoS Comput Biol. 2019;15:e1006783.
    PubMed     Text format     Abstract available


    January 2019
  10. MAJARIAN TD, Murphy RF, Lakdawala SS
    Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization.
    PLoS Comput Biol. 2019;15:e1006199.
    PubMed     Text format     Abstract available


  11. YAN AWC, Zaloumis SG, Simpson JA, McCaw JM, et al
    Sequential infection experiments for quantifying innate and adaptive immunity during influenza infection.
    PLoS Comput Biol. 2019;15:e1006568.
    PubMed     Text format     Abstract available


  12. HAW DJ, Cummings DAT, Lessler J, Salje H, et al
    Differential mobility and local variation in infection attack rate.
    PLoS Comput Biol. 2019;15:e1006600.
    PubMed     Text format     Abstract available


    November 2018
  13. VOLZ EM, Siveroni I
    Bayesian phylodynamic inference with complex models.
    PLoS Comput Biol. 2018;14:e1006546.
    PubMed     Text format     Abstract available


    October 2018
  14. CHAKRABORTY P, Lewis B, Eubank S, Brownstein JS, et al
    What to know before forecasting the flu.
    PLoS Comput Biol. 2018;14:e1005964.
    PubMed     Text format    


    September 2018
  15. HILL EM, House T, Dhingra MS, Kalpravidh W, et al
    The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh.
    PLoS Comput Biol. 2018;14:e1006439.
    PubMed     Text format     Abstract available


  16. ERTEM Z, Raymond D, Meyers LA
    Optimal multi-source forecasting of seasonal influenza.
    PLoS Comput Biol. 2018;14:e1006236.
    PubMed     Text format     Abstract available


    August 2018
  17. COPE RC, Ross JV, Chilver M, Stocks NP, et al
    Characterising seasonal influenza epidemiology using primary care surveillance data.
    PLoS Comput Biol. 2018;14:e1006377.
    PubMed     Text format     Abstract available


    June 2018
  18. BROOKS LC, Farrow DC, Hyun S, Tibshirani RJ, et al
    Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions.
    PLoS Comput Biol. 2018;14:e1006134.
    PubMed     Text format     Abstract available


    March 2018
  19. SAMBATURU N, Mukherjee S, Lopez-Garcia M, Molina-Paris C, et al
    Role of genetic heterogeneity in determining the epidemiological severity of H1N1 influenza.
    PLoS Comput Biol. 2018;14:e1006069.
    PubMed     Text format     Abstract available


  20. LEE EC, Arab A, Goldlust SM, Viboud C, et al
    Deploying digital health data to optimize influenza surveillance at national and local scales.
    PLoS Comput Biol. 2018;14:e1006020.
    PubMed     Text format     Abstract available


    February 2018
  21. THOMPSON RN, Gilligan CA, Cunniffe NJ
    Control fast or control smart: When should invading pathogens be controlled?
    PLoS Comput Biol. 2018;14:e1006014.
    PubMed     Text format     Abstract available


  22. RAY EL, Reich NG
    Prediction of infectious disease epidemics via weighted density ensembles.
    PLoS Comput Biol. 2018;14:e1005910.
    PubMed     Text format     Abstract available


    November 2017
  23. SHAMAN J, Kandula S, Yang W, Karspeck A, et al
    The use of ambient humidity conditions to improve influenza forecast.
    PLoS Comput Biol. 2017;13:e1005844.
    PubMed     Text format     Abstract available


  24. YAMANA TK, Kandula S, Shaman J
    Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States.
    PLoS Comput Biol. 2017;13:e1005801.
    PubMed     Text format     Abstract available


  25. VAN LEEUWEN E, Klepac P, Thorrington D, Pebody R, et al
    fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks.
    PLoS Comput Biol. 2017;13:e1005838.
    PubMed     Text format     Abstract available


    October 2017
  26. FOX SJ, Miller JC, Meyers LA
    Seasonality in risk of pandemic influenza emergence.
    PLoS Comput Biol. 2017;13:e1005749.
    PubMed     Text format     Abstract available


    June 2017
  27. DORRATOLTAJ N, Marathe A, Lewis BL, Swarup S, et al
    Epidemiological and economic impact of pandemic influenza in Chicago: Priorities for vaccine interventions.
    PLoS Comput Biol. 2017;13:e1005521.
    PubMed     Text format     Abstract available


    February 2017
  28. CHARU V, Zeger S, Gog J, Bjornstad ON, et al
    Human mobility and the spatial transmission of influenza in the United States.
    PLoS Comput Biol. 2017;13:e1005382.
    PubMed     Text format     Abstract available


  29. MAGEE D, Suchard MA, Scotch M
    Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.
    PLoS Comput Biol. 2017;13:e1005389.
    PubMed     Text format     Abstract available


  30. WON M, Marques-Pita M, Louro C, Goncalves-Sa J, et al
    Early and Real-Time Detection of Seasonal Influenza Onset.
    PLoS Comput Biol. 2017;13:e1005330.
    PubMed     Text format     Abstract available


    December 2016
  31. SUBRAMANIAN R, Graham AL, Grenfell BT, Arinaminpathy N, et al
    Universal or Specific? A Modeling-Based Comparison of Broad-Spectrum Influenza Vaccines against Conventional, Strain-Matched Vaccines.
    PLoS Comput Biol. 2016;12:e1005204.
    PubMed     Text format     Abstract available


    November 2016
  32. YANG W, Olson DR, Shaman J
    Forecasting Influenza Outbreaks in Boroughs and Neighborhoods of New York City.
    PLoS Comput Biol. 2016;12:e1005201.
    PubMed     Text format     Abstract available


    October 2016
  33. SCHELKER M, Mair CM, Jolmes F, Welke RW, et al
    Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency.
    PLoS Comput Biol. 2016;12:e1005075.
    PubMed     Text format     Abstract available


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