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COVID Reference, 4th edition, 372 pages

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  Influenza

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Articles published in PLoS Comput Biol

Retrieve available abstracts of 53 articles:
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Single Articles


    July 2020
  1. SCARPINO SV, Scott JG, Eggo RM, Clements B, et al
    Socioeconomic bias in influenza surveillance.
    PLoS Comput Biol. 2020;16:e1007941.
    PubMed     Abstract available


  2. HILTON J, Keeling MJ
    Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices.
    PLoS Comput Biol. 2020;16:e1008031.
    PubMed     Abstract available


  3. PARAG KV, Donnelly CA
    Using information theory to optimise epidemic models for real-time prediction and estimation.
    PLoS Comput Biol. 2020;16:e1007990.
    PubMed     Abstract available


    June 2020
  4. YANG W, Lau EHY, Cowling BJ
    Dynamic interactions of influenza viruses in Hong Kong during 1998-2018.
    PLoS Comput Biol. 2020;16:e1007989.
    PubMed     Abstract available


  5. SAAD-ROY CM, Arinaminpathy N, Wingreen NS, Levin SA, et al
    Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans.
    PLoS Comput Biol. 2020;16:e1007892.
    PubMed     Abstract available


  6. DUVIGNEAU S, Durr R, Laske T, Bachmann M, et al
    Model-based approach for predicting the impact of genetic modifications on product yield in biopharmaceutical manufacturing-Application to influenza vaccine production.
    PLoS Comput Biol. 2020;16:e1007810.
    PubMed     Abstract available


    May 2020
  7. WANG TE, Chao TL, Tsai HT, Lin PH, et al
    Differentiation of Cytopathic Effects (CPE) induced by influenza virus infection using deep Convolutional Neural Networks (CNN).
    PLoS Comput Biol. 2020;16:e1007883.
    PubMed     Abstract available


    April 2020
  8. QUIROUETTE C, Younis NP, Reddy MB, Beauchemin CAA, et al
    A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract.
    PLoS Comput Biol. 2020;16:e1007705.
    PubMed     Abstract available


  9. MCGOUGH SF, Johansson MA, Lipsitch M, Menzies NA, et al
    Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking.
    PLoS Comput Biol. 2020;16:e1007735.
    PubMed     Abstract available


    February 2020
  10. CASTRO LA, Bedford T, Ancel Meyers L
    Early prediction of antigenic transitions for influenza A/H3N2.
    PLoS Comput Biol. 2020;16:e1007683.
    PubMed     Abstract available


  11. REIMERING S, Munoz S, McHardy AC
    Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic.
    PLoS Comput Biol. 2020;16:e1007101.
    PubMed     Abstract available


    December 2019
  12. ENDO A, Uchida M, Kucharski AJ, Funk S, et al
    Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15.
    PLoS Comput Biol. 2019;15:e1007589.
    PubMed     Abstract available


    November 2019
  13. REICH NG, McGowan CJ, Yamana TK, Tushar A, et al
    Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
    PLoS Comput Biol. 2019;15:e1007486.
    PubMed     Abstract available


  14. RANGARAJAN P, Mody SK, Marathe M
    Forecasting dengue and influenza incidences using a sparse representation of Google trends, electronic health records, and time series data.
    PLoS Comput Biol. 2019;15:e1007518.
    PubMed     Abstract available


    October 2019
  15. HILL EM, Petrou S, de Lusignan S, Yonova I, et al
    Seasonal influenza: Modelling approaches to capture immunity propagation.
    PLoS Comput Biol. 2019;15:e1007096.
    PubMed     Abstract available


  16. PRIEDHORSKY R, Daughton AR, Barnard M, O'Connell F, et al
    Estimating influenza incidence using search query deceptiveness and generalized ridge regression.
    PLoS Comput Biol. 2019;15:e1007165.
    PubMed     Abstract available


    September 2019
  17. VENKATRAMANAN S, Chen J, Fadikar A, Gupta S, et al
    Optimizing spatial allocation of seasonal influenza vaccine under temporal constraints.
    PLoS Comput Biol. 2019;15:e1007111.
    PubMed     Abstract available


  18. BECKER AD, Wesolowski A, Bjornstad ON, Grenfell BT, et al
    Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination.
    PLoS Comput Biol. 2019;15:e1007305.
    PubMed     Abstract available


    August 2019
  19. HAY JA, Laurie K, White M, Riley S, et al
    Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets.
    PLoS Comput Biol. 2019;15:e1007294.
    PubMed     Abstract available


  20. YANG J, Muller NF, Bouckaert R, Xu B, et al
    Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration.
    PLoS Comput Biol. 2019;15:e1007189.
    PubMed     Abstract available


  21. KANDULA S, Shaman J
    Reappraising the utility of Google Flu Trends.
    PLoS Comput Biol. 2019;15:e1007258.
    PubMed     Abstract available


    May 2019
  22. BEN-NUN M, Riley P, Turtle J, Bacon DP, et al
    Forecasting national and regional influenza-like illness for the USA.
    PLoS Comput Biol. 2019;15:e1007013.
    PubMed     Abstract available


    April 2019
  23. LASKE T, Bachmann M, Dostert M, Karlas A, et al
    Model-based analysis of influenza A virus replication in genetically engineered cell lines elucidates the impact of host cell factors on key kinetic parameters of virus growth.
    PLoS Comput Biol. 2019;15:e1006944.
    PubMed     Abstract available


  24. KALIMERI K, Delfino M, Cattuto C, Perrotta D, et al
    Unsupervised extraction of epidemic syndromes from participatory influenza surveillance self-reported symptoms.
    PLoS Comput Biol. 2019;15:e1006173.
    PubMed     Abstract available


  25. MENG H, Yaari G, Bolen CR, Avey S, et al
    Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE).
    PLoS Comput Biol. 2019;15:e1006899.
    PubMed     Abstract available


    February 2019
  26. KRAMER SC, Shaman J
    Development and validation of influenza forecasting for 64 temperate and tropical countries.
    PLoS Comput Biol. 2019;15:e1006742.
    PubMed     Abstract available


  27. RUDIGER D, Kupke SY, Laske T, Zmora P, et al
    Multiscale modeling of influenza A virus replication in cell cultures predicts infection dynamics for highly different infection conditions.
    PLoS Comput Biol. 2019;15:e1006819.
    PubMed     Abstract available


  28. OSTHUS D, Daughton AR, Priedhorsky R
    Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited.
    PLoS Comput Biol. 2019;15:e1006599.
    PubMed     Abstract available


  29. PEI S, Cane MA, Shaman J
    Predictability in process-based ensemble forecast of influenza.
    PLoS Comput Biol. 2019;15:e1006783.
    PubMed     Abstract available


    January 2019
  30. MAJARIAN TD, Murphy RF, Lakdawala SS
    Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization.
    PLoS Comput Biol. 2019;15:e1006199.
    PubMed     Abstract available


  31. YAN AWC, Zaloumis SG, Simpson JA, McCaw JM, et al
    Sequential infection experiments for quantifying innate and adaptive immunity during influenza infection.
    PLoS Comput Biol. 2019;15:e1006568.
    PubMed     Abstract available


  32. HAW DJ, Cummings DAT, Lessler J, Salje H, et al
    Differential mobility and local variation in infection attack rate.
    PLoS Comput Biol. 2019;15:e1006600.
    PubMed     Abstract available


    November 2018
  33. VOLZ EM, Siveroni I
    Bayesian phylodynamic inference with complex models.
    PLoS Comput Biol. 2018;14:e1006546.
    PubMed     Abstract available


    October 2018
  34. CHAKRABORTY P, Lewis B, Eubank S, Brownstein JS, et al
    What to know before forecasting the flu.
    PLoS Comput Biol. 2018;14:e1005964.
    PubMed    


    September 2018
  35. HILL EM, House T, Dhingra MS, Kalpravidh W, et al
    The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh.
    PLoS Comput Biol. 2018;14:e1006439.
    PubMed     Abstract available


  36. ERTEM Z, Raymond D, Meyers LA
    Optimal multi-source forecasting of seasonal influenza.
    PLoS Comput Biol. 2018;14:e1006236.
    PubMed     Abstract available


    August 2018
  37. COPE RC, Ross JV, Chilver M, Stocks NP, et al
    Characterising seasonal influenza epidemiology using primary care surveillance data.
    PLoS Comput Biol. 2018;14:e1006377.
    PubMed     Abstract available


    June 2018
  38. BROOKS LC, Farrow DC, Hyun S, Tibshirani RJ, et al
    Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions.
    PLoS Comput Biol. 2018;14:e1006134.
    PubMed     Abstract available


    March 2018
  39. SAMBATURU N, Mukherjee S, Lopez-Garcia M, Molina-Paris C, et al
    Role of genetic heterogeneity in determining the epidemiological severity of H1N1 influenza.
    PLoS Comput Biol. 2018;14:e1006069.
    PubMed     Abstract available


  40. LEE EC, Arab A, Goldlust SM, Viboud C, et al
    Deploying digital health data to optimize influenza surveillance at national and local scales.
    PLoS Comput Biol. 2018;14:e1006020.
    PubMed     Abstract available


    February 2018
  41. THOMPSON RN, Gilligan CA, Cunniffe NJ
    Control fast or control smart: When should invading pathogens be controlled?
    PLoS Comput Biol. 2018;14:e1006014.
    PubMed     Abstract available


  42. RAY EL, Reich NG
    Prediction of infectious disease epidemics via weighted density ensembles.
    PLoS Comput Biol. 2018;14:e1005910.
    PubMed     Abstract available


    November 2017
  43. SHAMAN J, Kandula S, Yang W, Karspeck A, et al
    The use of ambient humidity conditions to improve influenza forecast.
    PLoS Comput Biol. 2017;13:e1005844.
    PubMed     Abstract available


  44. YAMANA TK, Kandula S, Shaman J
    Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States.
    PLoS Comput Biol. 2017;13:e1005801.
    PubMed     Abstract available


  45. VAN LEEUWEN E, Klepac P, Thorrington D, Pebody R, et al
    fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks.
    PLoS Comput Biol. 2017;13:e1005838.
    PubMed     Abstract available


    October 2017
  46. FOX SJ, Miller JC, Meyers LA
    Seasonality in risk of pandemic influenza emergence.
    PLoS Comput Biol. 2017;13:e1005749.
    PubMed     Abstract available


    June 2017
  47. DORRATOLTAJ N, Marathe A, Lewis BL, Swarup S, et al
    Epidemiological and economic impact of pandemic influenza in Chicago: Priorities for vaccine interventions.
    PLoS Comput Biol. 2017;13:e1005521.
    PubMed     Abstract available


    February 2017
  48. CHARU V, Zeger S, Gog J, Bjornstad ON, et al
    Human mobility and the spatial transmission of influenza in the United States.
    PLoS Comput Biol. 2017;13:e1005382.
    PubMed     Abstract available


  49. MAGEE D, Suchard MA, Scotch M
    Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.
    PLoS Comput Biol. 2017;13:e1005389.
    PubMed     Abstract available


  50. WON M, Marques-Pita M, Louro C, Goncalves-Sa J, et al
    Early and Real-Time Detection of Seasonal Influenza Onset.
    PLoS Comput Biol. 2017;13:e1005330.
    PubMed     Abstract available


    December 2016
  51. SUBRAMANIAN R, Graham AL, Grenfell BT, Arinaminpathy N, et al
    Universal or Specific? A Modeling-Based Comparison of Broad-Spectrum Influenza Vaccines against Conventional, Strain-Matched Vaccines.
    PLoS Comput Biol. 2016;12:e1005204.
    PubMed     Abstract available


    November 2016
  52. YANG W, Olson DR, Shaman J
    Forecasting Influenza Outbreaks in Boroughs and Neighborhoods of New York City.
    PLoS Comput Biol. 2016;12:e1005201.
    PubMed     Abstract available


    October 2016
  53. SCHELKER M, Mair CM, Jolmes F, Welke RW, et al
    Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency.
    PLoS Comput Biol. 2016;12:e1005075.
    PubMed     Abstract available


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