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Influenza

Free Subscription Articles published in PLoS Comput Biol Retrieve available abstracts of 157 articles: HTML format

Single Articles

November 2025
1. ROY M, Clapham HE, Mishra S
   Incorporating human mobility to enhance epidemic response and estimate real-time reproduction numbers.
   PLoS Comput Biol. 2025;21:e1013642.
   PubMed     Abstract available
   
   
   October 2025
2. O'NEILL X, White A, Northrup GR, Saad-Roy CM, et al
   Superspreading and the evolution of virulence.
   PLoS Comput Biol. 2025;21:e1013517.
   PubMed     Abstract available
   
   
   
3. TEITELBAUM CS, Casazza ML, Overton CT, Matchett EL, et al
   Host responses and viral traits interact to shape the impacts of climate warming on highly pathogenic avian influenza in migratory waterfowl.
   PLoS Comput Biol. 2025;21:e1013451.
   PubMed     Abstract available
   
   
   
4. PINETTES T, Leclerc QJ, Jean K, Temime L, et al
   The quarantine hospital strategy as a way to reduce both community and nosocomial transmission in the context of a COVID-like epidemic.
   PLoS Comput Biol. 2025;21:e1013548.
   PubMed     Abstract available
   
   
   
5. STEYN N, Chadeau-Hyam M, Elliott P, Donnelly CA, et al
   A Bayesian model for repeated cross-sectional epidemic prevalence survey data.
   PLoS Comput Biol. 2025;21:e1013515.
   PubMed     Abstract available
   
   
   
6. DU H, Zahn MV, Loo SL, Alleman TW, et al
   Improving policy design and epidemic response using integrated models of economic choice and disease dynamics with behavioral feedback.
   PLoS Comput Biol. 2025;21:e1013549.
   PubMed     Abstract available
   
   
   
7. TORRAS-PEREZ M, Yoon IHR, Weeratunga P, Ho LP, et al
   Topology across scales on heterogeneous cell data.
   PLoS Comput Biol. 2025;21:e1013460.
   PubMed     Abstract available
   
   
   
8. ERANTI P, Hegde M, Al Sium SM, Parra RG, et al
   Impact of the COVID-19 pandemic on computational biology early career researchers: A global retrospective study.
   PLoS Comput Biol. 2025;21:e1013554.
   PubMed     Abstract available
   
   
   
9. JOUBBI S, Micheli A, Milazzo P, Ciano G, et al
   Enhancing antibody-antigen interaction prediction with atomic flexibility.
   PLoS Comput Biol. 2025;21:e1013576.
   PubMed     Abstract available
   
   
   September 2025
10. HODGSON D, Hay J, Jarju S, Jobe D, et al
    serojump: A Bayesian tool for inferring infection timing and antibody kinetics from longitudinal serological data.
    PLoS Comput Biol. 2025;21:e1013467.
    PubMed     Abstract available
    
    
    
11. LIM D, Ko KT, Hong H, Lee H, et al
    A history-dependent approach for accurate initial condition estimation in epidemic models.
    PLoS Comput Biol. 2025;21:e1013438.
    PubMed     Abstract available
    
    
    
12. LOOKER J, Rock KS, Dyson L
    Identifying COVID-19 peaks using early warning signals.
    PLoS Comput Biol. 2025;21:e1013524.
    PubMed     Abstract available
    
    
    
13. BACKER JA, Klinkenberg D, Miura F, Wallinga J, et al
    Estimating the effectiveness of non-pharmaceutical interventions against COVID-19 transmission in the Netherlands.
    PLoS Comput Biol. 2025;21:e1013502.
    PubMed     Abstract available
    
    
    
14. BEREGI S, Parag KV
    Optimal algorithms for controlling infectious diseases in real time using noisy infection data.
    PLoS Comput Biol. 2025;21:e1013426.
    PubMed     Abstract available
    
    
    
15. LIN Y, Hay JA, Meng Y, Cowling BJ, et al
    Generalizing population RT-qPCR cycle threshold values-informed estimation of epidemiological dynamics: Impact of surveillance practices and pathogen variability.
    PLoS Comput Biol. 2025;21:e1013527.
    PubMed     Abstract available
    
    
    August 2025
16. TORRES-FLOREZ S, Flores Anato JL, He JH, Portilla VG, et al
    Evaluating COVID-19 vaccination policy in Quebec (Canada) using a data-driven dynamic transmission model.
    PLoS Comput Biol. 2025;21:e1013207.
    PubMed     Abstract available
    
    
    
17. SCIANNA M, Gallotti R, Tizzoni M, Artime O, et al
    Comparing the effectiveness of ring and block-vaccination strategies on networks.
    PLoS Comput Biol. 2025;21:e1013274.
    PubMed     Abstract available
    
    
    
18. TIZZANI M, Gauvin L
    Socioeconomic determinants of protective behaviors and contact patterns in the post-COVID-19 pandemic era: A cross-sectional study in Italy.
    PLoS Comput Biol. 2025;21:e1013262.
    PubMed     Abstract available
    
    
    
19. STEWART L, Evans S, Brevini T, Sampaziotis F, et al
    Modelling the potential use of pre-exposure prophylaxis to reduce nosocomial SARS-CoV-2 transmission.
    PLoS Comput Biol. 2025;21:e1013361.
    PubMed     Abstract available
    
    
    
20. REYNE B, Kamiya T, Djidjou-Demasse R, Alizon S, et al
    Leaky or polarised immunity: Non-Markovian modelling highlights the impact of immune memory assumptions.
    PLoS Comput Biol. 2025;21:e1013399.
    PubMed     Abstract available
    
    
    July 2025
21. NGANDU NK, Fielding BC, van Heusden P, Mcinga K, et al
    Population-level toggling of T cell immune escape at human leukocyte antigen anchor residues in SARS-CoV-2 Spike proteins, in an ethnically diverse population region.
    PLoS Comput Biol. 2025;21:e1013261.
    PubMed     Abstract available
    
    
    
22. LI Y, Gozzi N, Perra N
    Estimating behavioural relaxation induced by COVID-19 vaccines in the first months of their rollout.
    PLoS Comput Biol. 2025;21:e1013266.
    PubMed     Abstract available
    
    
    
23. JING S, Wang H
    Infectivity and fatality of influenza in pre- and post-COVID-19 pandemic year.
    PLoS Comput Biol. 2025;21:e1013229.
    PubMed     Abstract available
    
    
    
24. NGUYEN QD, Chang SL, Suster CJE, Rockett RJ, et al
    Multi-scale phylodynamic modelling of rapid punctuated pathogen evolution.
    PLoS Comput Biol. 2025;21:e1013295.
    PubMed     Abstract available
    
    
    
25. ABER R, Di Y, Dalziel BD
    Time-series modeling of epidemics in complex populations: Detecting changes in incidence volatility over time.
    PLoS Comput Biol. 2025;21:e1012882.
    PubMed     Abstract available
    
    
    
26. GONG R, Feng Z, Zhang Y
    Using homologous network to identify reassortment risk in H5Nx avian influenza viruses.
    PLoS Comput Biol. 2025;21:e1013301.
    PubMed     Abstract available
    
    
    
27. KEITHLEY J, Choudhuri A, Adhikari B, Pemmaraju SV, et al
    Analyzing greedy vaccine allocation algorithms for metapopulation disease models.
    PLoS Comput Biol. 2025;21:e1012539.
    PubMed     Abstract available
    
    
    June 2025
28. DEICHMANN J, Barda N, Canetti M, Peretz Y, et al
    Predicting antibody kinetics and duration of protection against SARS-CoV-2 following vaccination from sparse serological data.
    PLoS Comput Biol. 2025;21:e1013192.
    PubMed     Abstract available
    
    
    
29. VOUTOURI C, Munn LL, Stylianopoulos T, Jain RK, et al
    Biomarkers of mRNA vaccine efficacy derived from mechanistic modeling of tumor-immune interactions.
    PLoS Comput Biol. 2025;21:e1013163.
    PubMed     Abstract available
    
    
    
30. CHEN S, Venkatesan S, Arnetorp S, Bergenheim K, et al
    Features influencing the health and economic impact of preventing COVID-19 in immunocompromised individuals.
    PLoS Comput Biol. 2025;21:e1013072.
    PubMed     Abstract available
    
    
    
31. GAZEAU ST, Deng X, Brunet-Ratnasingham E, Kaufmann DE, et al
    Using virtual patient cohorts to uncover immune response differences in cancer and immunosuppressed COVID-19 patients.
    PLoS Comput Biol. 2025;21:e1013170.
    PubMed     Abstract available
    
    
    
32. MURPH AC, Gibson GC, Amona EB, Beesley LJ, et al
    Synthetic method of analogues for emerging infectious disease forecasting.
    PLoS Comput Biol. 2025;21:e1013203.
    PubMed     Abstract available
    
    
    May 2025
33. POLCZ P, Reguly IZ, Tornai K, Juhasz J, et al
    Smart epidemic control: A hybrid model blending ODEs and agent-based simulations for optimal, real-world intervention planning.
    PLoS Comput Biol. 2025;21:e1013028.
    PubMed     Abstract available
    
    
    
34. MEDINA CM, Palacios JA, Minin VM
    Accounting for reporting delays in real-time phylodynamic analyses with preferential sampling.
    PLoS Comput Biol. 2025;21:e1012970.
    PubMed     Abstract available
    
    
    April 2025
35. WU L, Baker CM, Tierney N, Carville K, et al
    Quantifying the impact of contact tracing interview prioritisation strategies on disease transmission: A modelling study.
    PLoS Comput Biol. 2025;21:e1012906.
    PubMed     Abstract available
    
    
    
36. POZZATI G, Flores SC
    Combining flipped-classroom and spaced-repetition learning in a master-level bioinformatics course.
    PLoS Comput Biol. 2025;21:e1012863.
    PubMed     Abstract available
    
    
    
37. TEOH YC, Noor MS, Aghakhani S, Girton J, et al
    Viral escape-inspired framework for structure-guided dual bait protein biosensor design.
    PLoS Comput Biol. 2025;21:e1012964.
    PubMed     Abstract available
    
    
    
38. HODCROFT EB, Wohlfender MS, Neher RA, Riou J, et al
    Estimating Re and overdispersion in secondary cases from the size of identical sequence clusters of SARS-CoV-2.
    PLoS Comput Biol. 2025;21:e1012960.
    PubMed     Abstract available
    
    
    
39. GROTBERG JB, Romano F, Grotberg JC
    Flow mechanisms of the air-blood barrier.
    PLoS Comput Biol. 2025;21:e1012917.
    PubMed     Abstract available
    
    
    
40. FERRAZ MVF, Adan WCS, Lima TE, Santos AJC, et al
    Design of nanobody targeting SARS-CoV-2 spike glycoprotein using CDR-grafting assisted by molecular simulation and machine learning.
    PLoS Comput Biol. 2025;21:e1012921.
    PubMed     Abstract available
    
    
    
41. ZHANG R, Tai J, Yao Q, Yang W, et al
    Behavior-driven forecasts of neighborhood-level COVID-19 spread in New York City.
    PLoS Comput Biol. 2025;21:e1012979.
    PubMed     Abstract available
    
    
    
42. KOLAR MR, Kobzarenko V, Mitra D
    Efficient discovery of frequently co-occurring mutations in a sequence database with matrix factorization.
    PLoS Comput Biol. 2025;21:e1012391.
    PubMed     Abstract available
    
    
    March 2025
43. EALES O, Shearer FM, McCaw JM
    How immunity shapes the long-term dynamics of influenza H3N2.
    PLoS Comput Biol. 2025;21:e1012893.
    PubMed     Abstract available
    
    
    
44. AMARAL AVR, Wolffram D, Moraga P, Bracher J, et al
    Post-processing and weighted combination of infectious disease nowcasts.
    PLoS Comput Biol. 2025;21:e1012836.
    PubMed     Abstract available
    
    
    
45. VON HOENE E, Roess A, Kavak H, Anderson T, et al
    Synthetic population generation with public health characteristics for spatial agent-based models.
    PLoS Comput Biol. 2025;21:e1012439.
    PubMed     Abstract available
    
    
    
46. WANG M, Patsenker J, Li H, Kluger Y, et al
    Supervised fine-tuning of pre-trained antibody language models improves antigen specificity prediction.
    PLoS Comput Biol. 2025;21:e1012153.
    PubMed     Abstract available
    
    
    February 2025
47. BANHOLZER N, Middelkoop K, Leukes J, Weingartner E, et al
    Estimating Mycobacterium tuberculosis transmission in a South African clinic: Spatiotemporal model based on person movements.
    PLoS Comput Biol. 2025;21:e1012823.
    PubMed     Abstract available
    
    
    
48. LOMBARD B, Moultrie H, Pulliam JRC, van Schalkwyk C, et al
    Simulation-based validation of a method to detect changes in SARS-CoV-2 reinfection risk.
    PLoS Comput Biol. 2025;21:e1012792.
    PubMed     Abstract available
    
    
    
49. LI W, Chen X, Liu S, Zhang C, et al
    Using a multi-strain infectious disease model with physical information neural networks to study the time dependence of SARS-CoV-2 variants of concern.
    PLoS Comput Biol. 2025;21:e1012778.
    PubMed     Abstract available
    
    
    
50. SIMPSON J, Kasson PM
    Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses.
    PLoS Comput Biol. 2025;21:e1012812.
    PubMed     Abstract available
    
    
    
51. SHEN X, Rumack A, Wilder B, Tibshirani RJ, et al
    Nowcasting reported covid-19 hospitalizations using de-identified, aggregated medical insurance claims data.
    PLoS Comput Biol. 2025;21:e1012717.
    PubMed     Abstract available
    
    
    
52. GAO S, Chakraborty AK, Greiner R, Lewis MA, et al
    Early detection of disease outbreaks and non-outbreaks using incidence data: A framework using feature-based time series classification and machine learning.
    PLoS Comput Biol. 2025;21:e1012782.
    PubMed     Abstract available
    
    
    
53. CASABURI P, Dall'Amico L, Gozzi N, Kalimeri K, et al
    Resilience of mobility network to dynamic population response across COVID-19 interventions: Evidences from Chile.
    PLoS Comput Biol. 2025;21:e1012802.
    PubMed     Abstract available
    
    
    
54. ZHAN X, Xu Q, Zheng Y, Lu G, et al
    Reliability-enhanced data cleaning in biomedical machine learning using inductive conformal prediction.
    PLoS Comput Biol. 2025;21:e1012803.
    PubMed     Abstract available
    
    
    January 2025
55. BADROU A, Mariano CA, Ramirez GO, Shankel M, et al
    Towards constructing a generalized structural 3D breathing human lung model based on experimental volumes, pressures, and strains.
    PLoS Comput Biol. 2025;21:e1012680.
    PubMed     Abstract available
    
    
    
56. BOTTCHER L, D'Orsogna MR, Chou T
    Aggregating multiple test results to improve medical decision-making.
    PLoS Comput Biol. 2025;21:e1012749.
    PubMed     Abstract available
    
    
    December 2024
57. ABRAHAM AA, Tan ZC, Shrestha P, Bozich ER, et al
    A multivalent binding model infers antibody Fc species from systems serology.
    PLoS Comput Biol. 2024;20:e1012663.
    PubMed     Abstract available
    
    
    
58. ZAARAOUI H, Schumer C, Duval X, Hoen B, et al
    Modelling the effectiveness of antiviral treatment strategies to prevent household transmission of acute respiratory viruses.
    PLoS Comput Biol. 2024;20:e1012573.
    PubMed     Abstract available
    
    
    
59. CALMON L, Colosi E, Bassignana G, Barrat A, et al
    Preserving friendships in school contacts: An algorithm to construct synthetic temporal networks for epidemic modelling.
    PLoS Comput Biol. 2024;20:e1012661.
    PubMed     Abstract available
    
    
    
60. FAJARDO-FONTIVEROS O, Mattei M, Burgio G, Granell C, et al
    Machine learning mathematical models for incidence estimation during pandemics.
    PLoS Comput Biol. 2024;20:e1012687.
    PubMed     Abstract available
    
    
    
61. ZHANG XY, Yu LL, Wang WY, Sun GQ, et al
    Estimating the time-varying effective reproduction number via Cycle Threshold-based Transformer.
    PLoS Comput Biol. 2024;20:e1012694.
    PubMed     Abstract available
    
    
    
62. ZUNKER H, Schmieding R, Kerkmann D, Schengen A, et al
    Novel travel time aware metapopulation models and multi-layer waning immunity for late-phase epidemic and endemic scenarios.
    PLoS Comput Biol. 2024;20:e1012630.
    PubMed     Abstract available
    
    
    
63. CHERIAN P, Kshirsagar J, Neekhra B, Deshkar G, et al
    BharatSim: An agent-based modelling framework for India.
    PLoS Comput Biol. 2024;20:e1012682.
    PubMed     Abstract available
    
    
    November 2024
64. SHE B, Smith RL, Pytlarz I, Sundaram S, et al
    A framework for counterfactual analysis, strategy evaluation, and control of epidemics using reproduction number estimates.
    PLoS Comput Biol. 2024;20:e1012569.
    PubMed     Abstract available
    
    
    October 2024
65. XIA F, Xiao Y, Ma J
    The optimal spatially-dependent control measures to effectively and economically eliminate emerging infectious diseases.
    PLoS Comput Biol. 2024;20:e1012498.
    PubMed     Abstract available
    
    
    
66. MATHEBULA D, Amankwah A, Amouzouvi K, Assamagan KA, et al
    Modelling the impact of vaccination on COVID-19 in African countries.
    PLoS Comput Biol. 2024;20:e1012456.
    PubMed     Abstract available
    
    
    
67. ANDRONICO A, Paireau J, Cauchemez S
    Integrating information from historical data into mechanistic models for influenza forecasting.
    PLoS Comput Biol. 2024;20:e1012523.
    PubMed     Abstract available
    
    
    September 2024
68. JIANG J, Meng X, Wang Y, Zhuang Z, et al
    Effect of aberrant fructose metabolism following SARS-CoV-2 infection on colorectal cancer patients' poor prognosis.
    PLoS Comput Biol. 2024;20:e1012412.
    PubMed     Abstract available
    
    
    
69. ABOUSAMRA E, Figgins M, Bedford T
    Fitness models provide accurate short-term forecasts of SARS-CoV-2 variant frequency.
    PLoS Comput Biol. 2024;20:e1012443.
    PubMed     Abstract available
    
    
    
70. OLIVEIRA ROSTER KI, Kissler SM, Omoregie E, Wang JC, et al
    Surveillance strategies for the detection of new pathogen variants across epidemiological contexts.
    PLoS Comput Biol. 2024;20:e1012416.
    PubMed     Abstract available
    
    
    
71. MILLEVOI C, Pasetto D, Ferronato M
    A Physics-Informed Neural Network approach for compartmental epidemiological models.
    PLoS Comput Biol. 2024;20:e1012387.
    PubMed     Abstract available
    
    
    
72. LI K, Chaguza C, Stamp J, Chew YT, et al
    Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.
    PLoS Comput Biol. 2024;20:e1012469.
    PubMed     Abstract available
    
    
    
73. TANG B, Ma K, Liu Y, Wang X, et al
    Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: A mechanistic and deep learning study.
    PLoS Comput Biol. 2024;20:e1012497.
    PubMed     Abstract available
    
    
    
74. KUMAGAI Y
    BootCellNet, a resampling-based procedure, promotes unsupervised identification of cell populations via robust inference of gene regulatory networks.
    PLoS Comput Biol. 2024;20:e1012480.
    PubMed     Abstract available
    
    
    
75. KEELING MJ, Dyson L
    A retrospective assessment of forecasting the peak of the SARS-CoV-2 Omicron BA.1 wave in England.
    PLoS Comput Biol. 2024;20:e1012452.
    PubMed     Abstract available
    
    
    August 2024
76. BOUROS I, Hill EM, Keeling MJ, Moore S, et al
    Prioritising older individuals for COVID-19 booster vaccination leads to optimal public health outcomes in a range of socio-economic settings.
    PLoS Comput Biol. 2024;20:e1012309.
    PubMed     Abstract available
    
    
    
77. SAAD-ROY CM, Morris SE, Boots M, Baker RE, et al
    Impact of waning immunity against SARS-CoV-2 severity exacerbated by vaccine hesitancy.
    PLoS Comput Biol. 2024;20:e1012211.
    PubMed     Abstract available
    
    
    
78. LIN J, Aprahamian H, Golovko G
    A proactive/reactive mass screening approach with uncertain symptomatic cases.
    PLoS Comput Biol. 2024;20:e1012308.
    PubMed     Abstract available
    
    
    
79. BOLAJI AJ, Duggan AT
    In silico analyses identify sequence contamination thresholds for Nanopore-generated SARS-CoV-2 sequences.
    PLoS Comput Biol. 2024;20:e1011539.
    PubMed     Abstract available
    
    
    July 2024
80. LAU YC, Shan S, Wang D, Chen D, et al
    Forecasting of influenza activity and associated hospital admission burden and estimating the impact of COVID-19 pandemic on 2019/20 winter season in Hong Kong.
    PLoS Comput Biol. 2024;20:e1012311.
    PubMed     Abstract available
    
    
    
81. DOYLE NJ, Cumming F, Thompson RN, Tildesley MJ, et al
    When should lockdown be implemented? Devising cost-effective strategies for managing epidemics amid vaccine uncertainty.
    PLoS Comput Biol. 2024;20:e1012010.
    PubMed     Abstract available
    
    
    
82. ROSENBLATT E, Cook JD, DiRenzo GV, Grant EHC, et al
    Epidemiological modeling of SARS-CoV-2 in white-tailed deer (Odocoileus virginianus) reveals conditions for introduction and widespread transmission.
    PLoS Comput Biol. 2024;20:e1012263.
    PubMed     Abstract available
    
    
    
83. GABERNET G, Marquez S, Bjornson R, Peltzer A, et al
    nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
    PLoS Comput Biol. 2024;20:e1012265.
    PubMed     Abstract available
    
    
    June 2024
84. HILL EM, Petrou S, de Lusignan S, Yonova I, et al
    Correction: Seasonal influenza: Modelling approaches to capture immunity propagation.
    PLoS Comput Biol. 2024;20:e1012213.
    PubMed     Abstract available
    
    
    
85. ROJAS CHAVEZ RA, Fili M, Han C, Rahman SA, et al
    Mapping the Evolutionary Space of SARS-CoV-2 Variants to Anticipate Emergence of Subvariants Resistant to COVID-19 Therapeutics.
    PLoS Comput Biol. 2024;20:e1012215.
    PubMed     Abstract available
    
    
    
86. SHUBIN M, Brustad HK, Midtbo JE, Gunther F, et al
    The influence of cross-border mobility on the COVID-19 epidemic in Nordic countries.
    PLoS Comput Biol. 2024;20:e1012182.
    PubMed     Abstract available
    
    
    
87. SALWIG S, Drefs J, Lucke J
    Zero-shot denoising of microscopy images recorded at high-resolution limits.
    PLoS Comput Biol. 2024;20:e1012192.
    PubMed     Abstract available
    
    
    May 2024
88. HLADISH TJ, Pillai AN, Pearson CAB, Toh KB, et al
    Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.
    PLoS Comput Biol. 2024;20:e1012128.
    PubMed     Abstract available
    
    
    
89. LOPEZ VK, Cramer EY, Pagano R, Drake JM, et al
    Challenges of COVID-19 Case Forecasting in the US, 2020-2021.
    PLoS Comput Biol. 2024;20:e1011200.
    PubMed     Abstract available
    
    
    
90. ASPLIN P, Keeling MJ, Mancy R, Hill EM, et al
    Epidemiological and health economic implications of symptom propagation in respiratory pathogens: A mathematical modelling investigation.
    PLoS Comput Biol. 2024;20:e1012096.
    PubMed     Abstract available
    
    
    
91. TRINITY L, Stege U, Jabbari H
    Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot.
    PLoS Comput Biol. 2024;20:e1011787.
    PubMed     Abstract available
    
    
    
92. FOSTER ZSL, Tupper AS, Press CM, Grunwald NJ, et al
    Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data.
    PLoS Comput Biol. 2024;20:e1012139.
    PubMed     Abstract available
    
    
    
93. MASSEY A, Boennec C, Restrepo-Ortiz CX, Blanchet C, et al
    Real-time forecasting of COVID-19-related hospital strain in France using a non-Markovian mechanistic model.
    PLoS Comput Biol. 2024;20:e1012124.
    PubMed     Abstract available
    
    
    
94. RAWSON T, Hinsley W, Sonabend R, Semenova E, et al
    The impact of health inequity on spatial variation of COVID-19 transmission in England.
    PLoS Comput Biol. 2024;20:e1012141.
    PubMed     Abstract available
    
    
    April 2024
95. BENISTON E, Skittrall JP
    Locations and structures of influenza A virus packaging-associated signals and other functional elements via an in silico pipeline for predicting constrained features in RNA viruses.
    PLoS Comput Biol. 2024;20:e1012009.
    PubMed     Abstract available
    
    
    
96. LISON A, Abbott S, Huisman J, Stadler T, et al
    Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates.
    PLoS Comput Biol. 2024;20:e1012021.
    PubMed     Abstract available
    
    
    
97. BOUMAN JA, Hauser A, Grimm SL, Wohlfender M, et al
    Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models.
    PLoS Comput Biol. 2024;20:e1011575.
    PubMed     Abstract available
    
    
    March 2024
98. SHAO Y, Magee AF, Vasylyeva TI, Suchard MA, et al
    Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models.
    PLoS Comput Biol. 2024;20:e1011640.
    PubMed     Abstract available
    
    
    
99. JIJON S, Czuppon P, Blanquart F, Debarre F, et al
    Using early detection data to estimate the date of emergence of an epidemic outbreak.
    PLoS Comput Biol. 2024;20:e1011934.
    PubMed     Abstract available
    
    
    
100. HASSE T, Mantei E, Shahoei R, Pawnikar S, et al
     Mechanistic insights into ligand dissociation from the SARS-CoV-2 spike glycoprotein.
     PLoS Comput Biol. 2024;20:e1011955.
     PubMed     Abstract available
     
     
     
101. PUNG R, Russell TW, Kucharski AJ
     Detecting changes in generation and serial intervals under varying pathogen biology, contact patterns and outbreak response.
     PLoS Comput Biol. 2024;20:e1011967.
     PubMed     Abstract available
     
     
     
102. ATAMER BALKAN B, Chang Y, Sparnaaij M, Wouda B, et al
     The multi-dimensional challenges of controlling respiratory virus transmission in indoor spaces: Insights from the linkage of a microscopic pedestrian simulation and SARS-CoV-2 transmission model.
     PLoS Comput Biol. 2024;20:e1011956.
     PubMed     Abstract available
     
     
     January 2024
103. CHAN LYH, Ro G, Midtbo JE, Di Ruscio F, et al
     Modeling geographic vaccination strategies for COVID-19 in Norway.
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104. SHIN B, An G, Cockrell RC
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105. GRUNNILL M, Arino J, McCarthy Z, Bragazzi NL, et al
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106. PLANK MJ, Watson L, Maclaren OJ
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107. RAMACHANDRAN A, Lumetta SS, Chen D
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108. VAN BOVEN M, van Dorp CH, Westerhof I, Jaddoe V, et al
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110. MOREL JD, Morel JM, Alvarez L
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113. ALAHAKOON P, Taylor PG, McCaw JM
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114. DRAKE JM, Handel A, Marty E, O'Dea EB, et al
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116. BROCKHAUS EK, Wolffram D, Stadler T, Osthege M, et al
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119. HE M, Tang S, Xiao Y
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120. ZHOU Z, Li D, Zhao Z, Shi S, et al
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121. ZHANG K, Xia Z, Huang S, Sun GQ, et al
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122. MUNDAY JD, Abbott S, Meakin S, Funk S, et al
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123. OVERTON CE, Abbott S, Christie R, Cumming F, et al
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124. WANG Z, Wu P, Wang L, Li B, et al
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125. MORRIS M, Hayes P, Cox IJ, Lampos V, et al
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126. CLAIRON Q, Prague M, Planas D, Bruel T, et al
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127. WOLFFRAM D, Abbott S, An der Heiden M, Funk S, et al
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129. YEDIDYA Y, Davis D, Drier Y
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134. LOU S, Yang M, Li T, Zhao W, et al
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136. PARAG KV, Obolski U
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137. YANG W, Shaman J
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140. MOREL JD, Morel JM, Alvarez L
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142. BRETT TS, Bansal S, Rohani P
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143. MICHALSKI M, Setny P
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144. SPERRY MM, Oskotsky TT, Maric I, Kaushal S, et al
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147. SEKAR RV, Oliva PJ, Woodside MT
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