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Articles published in J Clin Microbiol

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Single Articles


    July 2020
  1. GRENINGER AL, Jerome KR
    The First Quarter of SARS-CoV-2 Testing: the University of Washington Medicine Experience.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  2. MCADAM AJ
    Special Issue on Diagnostic Testing for Severe Acute Respiratory Syndrome Coronavirus 2 and Lessons from This Pandemic.
    J Clin Microbiol. 2020;58.
    PubMed    


  3. ROGERS R, O'Brien T, Aridi J, Beckwith CG, et al
    The COVID-19 Diagnostic Dilemma: a Clinician's Perspective.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  4. COTTER PA
    My Experience with SARS-CoV-2, with a Focus on Testing.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  5. PARIKH BA, Bailey TC, Lyons PG, Anderson NW, et al
    Closing the Brief Case: "Not Positive" or "Not Sure"-COVID-19-Negative Results in a Symptomatic Patient.
    J Clin Microbiol. 2020;58.
    PubMed    


  6. PARIKH BA, Bailey TC, Lyons PG, Anderson NW, et al
    The Brief Case: "Not Positive" or "Not Sure"-COVID-19-Negative Results in a Symptomatic Patient.
    J Clin Microbiol. 2020;58.
    PubMed    


  7. SOLOMON IH, Padera RF Jr
    Answer to August 2020 Photo Quiz.
    J Clin Microbiol. 2020;58.
    PubMed    


  8. MCADAM AJ
    What Is Needed for the Response to COVID-19? A Micro-Comic Strip.
    J Clin Microbiol. 2020;58.
    PubMed    


  9. SAIF LJ, Jung K
    Comparative Pathogenesis of Bovine and Porcine Respiratory Coronaviruses in the Animal Host Species and SARS-CoV-2 in Humans.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  10. HUANG CG, Lee KM, Hsiao MJ, Yang SL, et al
    Culture-Based Virus Isolation To Evaluate Potential Infectivity of Clinical Specimens Tested for COVID-19.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  11. DELLIERE S, Salmona M, Minier M, Gabassi A, et al
    Evaluation of the COVID-19 IgG/IgM Rapid Test from Orient Gene Biotech.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  12. PABBARAJU K, Wong AA, Douesnard M, Ma R, et al
    A Public Health Laboratory Response to the Pandemic.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  13. THEEL ES, Harring J, Hilgart H, Granger D, et al
    Performance Characteristics of Four High-Throughput Immunoassays for Detection of IgG Antibodies against SARS-CoV-2.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  14. GREEN DA, Zucker J, Westblade LF, Whittier S, et al
    Clinical Performance of SARS-CoV-2 Molecular Tests.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  15. HOU H, Chen J, Wang Y, Lu Y, et al
    Multicenter Evaluation of the Cepheid Xpert Xpress SARS-CoV-2 Assay for the Detection of SARS-CoV-2 in Oropharyngeal Swab Specimens.
    J Clin Microbiol. 2020;58.
    PubMed    


  16. MAYS JA, Greninger AL, Jerome KR, Lynch JB, et al
    Preprocedural Surveillance Testing for SARS-CoV-2 in an Asymptomatic Population in the Seattle Region Shows Low Rates of Positivity.
    J Clin Microbiol. 2020;58.
    PubMed    


  17. CHEN JH, Yip CC, Chan JF, Poon RW, et al
    Clinical Performance of the Luminex NxTAG CoV Extended Panel for SARS-CoV-2 Detection in Nasopharyngeal Specimens from COVID-19 Patients in Hong Kong.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  18. BASU A, Zinger T, Inglima K, Woo KM, et al
    Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  19. MOORE NM, Li H, Schejbal D, Lindsley J, et al
    Comparison of Two Commercial Molecular Tests and a Laboratory-Developed Modification of the CDC 2019-nCoV Reverse Transcriptase PCR Assay for the Detection of SARS-CoV-2.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  20. HOGAN CA, Garamani N, Lee AS, Tung JK, et al
    Comparison of the Accula SARS-CoV-2 Test with a Laboratory-Developed Assay for Detection of SARS-CoV-2 RNA in Clinical Nasopharyngeal Specimens.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  21. BRODER K, Babiker A, Myers C, White T, et al
    Test Agreement between Roche Cobas 6800 and Cepheid GeneXpert Xpress SARS-CoV-2 Assays at High Cycle Threshold Ranges.
    J Clin Microbiol. 2020;58.
    PubMed    


  22. MCCORMICK-BAW C, Morgan K, Gaffney D, Cazares Y, et al
    Saliva as an Alternate Specimen Source for Detection of SARS-CoV-2 in Symptomatic Patients Using Cepheid Xpert Xpress SARS-CoV-2.
    J Clin Microbiol. 2020;58.
    PubMed    


  23. SEPULVEDA J, Westblade LF, Whittier S, Satlin MJ, et al
    Bacteremia and Blood Culture Utilization during COVID-19 Surge in New York City.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  24. SMITH KP, Cheng A, Chopelas A, DuBois-Coyne S, et al
    Large-Scale, In-House Production of Viral Transport Media To Support SARS-CoV-2 PCR Testing in a Multihospital Health Care Network during the COVID-19 Pandemic.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  25. LAMBERT-NICLOT S, Cuffel A, Le Pape S, Vauloup-Fellous C, et al
    Evaluation of a Rapid Diagnostic Assay for Detection of SARS-CoV-2 Antigen in Nasopharyngeal Swabs.
    J Clin Microbiol. 2020;58.
    PubMed    


  26. CALLAHAN CJ, Lee R, Zulauf KE, Tamburello L, et al
    Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  27. CRANEY AR, Velu PD, Satlin MJ, Fauntleroy KA, et al
    Comparison of Two High-Throughput Reverse Transcription-PCR Systems for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  28. MITCHELL SL, St George K, Rhoads DD, Butler-Wu SM, et al
    Understanding, Verifying, and Implementing Emergency Use Authorization Molecular Diagnostics for the Detection of SARS-CoV-2 RNA.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  29. BRYAN A, Pepper G, Wener MH, Fink SL, et al
    Performance Characteristics of the Abbott Architect SARS-CoV-2 IgG Assay and Seroprevalence in Boise, Idaho.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  30. LOEFFELHOLZ MJ, Alland D, Butler-Wu SM, Pandey U, et al
    Multicenter Evaluation of the Cepheid Xpert Xpress SARS-CoV-2 Test.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  31. LIEBERMAN JA, Pepper G, Naccache SN, Huang ML, et al
    Comparison of Commercially Available and Laboratory-Developed Assays for In Vitro Detection of SARS-CoV-2 in Clinical Laboratories.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  32. THEEL ES, Slev P, Wheeler S, Couturier MR, et al
    The Role of Antibody Testing for SARS-CoV-2: Is There One?
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  33. ZHEN W, Manji R, Smith E, Berry GJ, et al
    Comparison of Four Molecular In Vitro Diagnostic Assays for the Detection of SARS-CoV-2 in Nasopharyngeal Specimens.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  34. VISSEAUX B, Le Hingrat Q, Collin G, Bouzid D, et al
    Evaluation of the QIAstat-Dx Respiratory SARS-CoV-2 Panel, the First Rapid Multiplex PCR Commercial Assay for SARS-CoV-2 Detection.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  35. ROGERS AA, Baumann RE, Borillo GA, Kagan RM, et al
    Evaluation of Transport Media and Specimen Transport Conditions for the Detection of SARS-CoV-2 by Use of Real-Time Reverse Transcription-PCR.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  36. ZHEN W, Smith E, Manji R, Schron D, et al
    Clinical Evaluation of Three Sample-to-Answer Platforms for Detection of SARS-CoV-2.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  37. HARRINGTON A, Cox B, Snowdon J, Bakst J, et al
    Comparison of Abbott ID Now and Abbott m2000 Methods for the Detection of SARS-CoV-2 from Nasopharyngeal and Nasal Swabs from Symptomatic Patients.
    J Clin Microbiol. 2020;58.
    PubMed    


  38. WILLIAMS E, Bond K, Zhang B, Putland M, et al
    Saliva as a Noninvasive Specimen for Detection of SARS-CoV-2.
    J Clin Microbiol. 2020;58.
    PubMed    


  39. AVANISS-AGHAJANI E, Sarkissian A, Fernando F, Avaniss-Aghajani A, et al
    Validation of the Hologic Aptima Unisex and Multitest Specimen Collection Kits Used for Endocervical and Male Urethral Swab Specimens (Aptima Swabs) for Collection of Samples from SARS-CoV-2-Infected Patients.
    J Clin Microbiol. 2020;58.
    PubMed    


  40. MORAN A, Beavis KG, Matushek SM, Ciaglia C, et al
    Detection of SARS-CoV-2 by Use of the Cepheid Xpert Xpress SARS-CoV-2 and Roche cobas SARS-CoV-2 Assays.
    J Clin Microbiol. 2020;58.
    PubMed    


  41. RHOADS DD, Cherian SS, Roman K, Stempak LM, et al
    Comparison of Abbott ID Now, DiaSorin Simplexa, and CDC FDA Emergency Use Authorization Methods for the Detection of SARS-CoV-2 from Nasopharyngeal and Nasal Swabs from Individuals Diagnosed with COVID-19.
    J Clin Microbiol. 2020;58.
    PubMed    


    June 2020
  42. HEERINGA M, Leav B, Smolenov I, Palladino G, et al
    Comparability of Antibody Titers Determined by Hemagglutination Inhibition and Microneutralization Assays Against Seasonal Influenza Strains.
    J Clin Microbiol. 2020 Jun 3. pii: JCM.00750-20. doi: 10.1128/JCM.00750.
    PubMed     Abstract available


    May 2020
  43. PERE H, Podglajen I, Wack M, Flamarion E, et al
    Nasal Swab Sampling for SARS-CoV-2: a Convenient Alternative in Times of Nasopharyngeal Swab Shortage.
    J Clin Microbiol. 2020;58.
    PubMed    


  44. VERMEIREN C, Marchand-Senecal X, Sheldrake E, Bulir D, et al
    Comparison of Copan ESwab and FLOQSwab for COVID-19 Diagnosis: Working around a Supply Shortage.
    J Clin Microbiol. 2020;58.
    PubMed    


  45. WANG Q, Du Q, Guo B, Mu D, et al
    A Method To Prevent SARS-CoV-2 IgM False Positives in Gold Immunochromatography and Enzyme-Linked Immunosorbent Assays.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  46. POLJAK M, Korva M, Knap Gasper N, Fujs Komlos K, et al
    Clinical Evaluation of the cobas SARS-CoV-2 Test and a Diagnostic Platform Switch during 48 Hours in the Midst of the COVID-19 Pandemic.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  47. NALLA AK, Casto AM, Huang MW, Perchetti GA, et al
    Comparative Performance of SARS-CoV-2 Detection Assays Using Seven Different Primer-Probe Sets and One Assay Kit.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  48. TANG YW, Schmitz JE, Persing DH, Stratton CW, et al
    Laboratory Diagnosis of COVID-19: Current Issues and Challenges.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  49. CORREA-MARTINEZ CL, Kampmeier S, Kumpers P, Schwierzeck V, et al
    A Pandemic in Times of Global Tourism: Superspreading and Exportation of COVID-19 Cases from a Ski Area in Austria.
    J Clin Microbiol. 2020;58.
    PubMed    


  50. LIU W, Liu L, Kou G, Zheng Y, et al
    Evaluation of Nucleocapsid and Spike Protein-Based Enzyme-Linked Immunosorbent Assays for Detecting Antibodies against SARS-CoV-2.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  51. RODINO KG, Espy MJ, Buckwalter SP, Walchak RC, et al
    Evaluation of Saline, Phosphate-Buffered Saline, and Minimum Essential Medium as Potential Alternatives to Viral Transport Media for SARS-CoV-2 Testing.
    J Clin Microbiol. 2020;58.
    PubMed    


    April 2020
  52. KHAN S, Siddique R, Shereen MA, Ali A, et al
    Emergence of a Novel Coronavirus, Severe Acute Respiratory Syndrome Coronavirus 2: Biology and Therapeutic Options.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  53. CHAN JF, Yip CC, To KK, Tang TH, et al
    Improved Molecular Diagnosis of COVID-19 by the Novel, Highly Sensitive and Specific COVID-19-RdRp/Hel Real-Time Reverse Transcription-PCR Assay Validated In Vitro and with Clinical Specimens.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available


  54. WINICHAKOON P, Chaiwarith R, Liwsrisakun C, Salee P, et al
    Negative Nasopharyngeal and Oropharyngeal Swabs Do Not Rule Out COVID-19.
    J Clin Microbiol. 2020;58.
    PubMed    


  55. YANG G, Hodges EN, Winter J, Zanders N, et al
    Development of an RNA strand-specific hybridization assay to differentiate replicating versus non-replicating influenza A virus.
    J Clin Microbiol. 2020 Apr 3. pii: JCM.00252-20. doi: 10.1128/JCM.00252.
    PubMed     Abstract available


    March 2020
  56. STELLRECHT KA, Cimino JL, Maceira VP
    The Panther Fusion(R) System with Open Access Functionality for Lab Developed Tests (LDT) for Influenza A Subtyping.
    J Clin Microbiol. 2020 Mar 30. pii: JCM.00188-20. doi: 10.1128/JCM.00188.
    PubMed     Abstract available


  57. YIP CC, Chan WM, Ip JD, Seng CW, et al
    Nanopore sequencing reveals novel targets for the diagnosis and surveillance of human and avian influenza A virus.
    J Clin Microbiol. 2020 Mar 4. pii: JCM.02127-19. doi: 10.1128/JCM.02127.
    PubMed     Abstract available


    January 2020
  58. KANWAR N, Michael J, Doran K, Montgomery E, et al
    Comparison of the ID NOW(TM) Influenza A & B 2, Cobas((R)) Influenza A/B, and Xpert((R)) Xpress Flu Point-of-Care Nucleic Acid Amplification Tests for Influenza A/B Detection in Children.
    J Clin Microbiol. 2020 Jan 15. pii: JCM.01611-19. doi: 10.1128/JCM.01611.
    PubMed     Abstract available


    October 2019
  59. LEWANDOWSKI K, Xu Y, Pullan ST, Lumley SF, et al
    Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples.
    J Clin Microbiol. 2019 Oct 30. pii: JCM.00963-19. doi: 10.1128/JCM.00963.
    PubMed     Abstract available


    September 2019
  60. MOTTA FC, Born PS, Resende PC, Brown D, et al
    A cheap and accurate RT-PCR-melting temperature assay for real time Influenza B lineages discrimination.
    J Clin Microbiol. 2019 Sep 25. pii: JCM.00602-19. doi: 10.1128/JCM.00602.
    PubMed     Abstract available


    June 2019
  61. SPENCER S, Thompson MG, Flannery B, Fry A, et al
    Comparison of Respiratory Specimen Collection Methods for Detection of Influenza Virus Infection by RT-PCR: A Literature Review.
    J Clin Microbiol. 2019 Jun 19. pii: JCM.00027-19. doi: 10.1128/JCM.00027.
    PubMed     Abstract available


  62. HERNANDEZ S, Munoz-Almagro C, Ciruela P, Soldevila N, et al
    Invasive pneumococcal disease and influenza activity in pediatric population. Impact of PCV13 vaccination in pandemic and non-pandemic influenza periods.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00363-19. doi: 10.1128/JCM.00363.
    PubMed     Abstract available


    January 2019
  63. BENIRSCHKE RC, McElvania E, Thomson R, Kaul K, et al
    Clinical Impact of Rapid Point-of-Care Polymerase Chain Reaction Influenza Testing In An Urgent Care Setting: A Single Center Study.
    J Clin Microbiol. 2019 Jan 2. pii: JCM.01281-18. doi: 10.1128/JCM.01281.
    PubMed     Abstract available


    September 2018
  64. BANERJEE D, Kanwar N, Hassan F, Essmyer C, et al
    Comparison of Six Sample-to-Answer Influenza A/B and RSV Nucleic Acid Amplification Assays Using Respiratory Specimens from Children.
    J Clin Microbiol. 2018 Sep 5. pii: JCM.00930-18. doi: 10.1128/JCM.00930.
    PubMed     Abstract available


    July 2018
  65. FURUYAMA Y, Takahashi Y, Noguchi K, Murakami H, et al
    Subpopulation Primers Essential for Exhaustive Detection of Diverse Hemagglutinin Genes of H5-Subtype Avian Influenza Viruses by Loop-mediated Isothermal Amplification Method.
    J Clin Microbiol. 2018 Jul 18. pii: JCM.00985-18. doi: 10.1128/JCM.00985.
    PubMed     Abstract available


    June 2018
  66. GREEN DA, St George K
    Rapid Antigen Tests for Influenza: Rationale and Significance of the FDA Reclassification.
    J Clin Microbiol. 2018 Jun 13. pii: JCM.00711-18. doi: 10.1128/JCM.00711.
    PubMed     Abstract available


    April 2018
  67. AZAR MM, Landry ML
    Detection of influenza A and B viruses and respiratory syncytial virus using CLIA-waived point-of-care assays: A paradigm shift to molecular tests.
    J Clin Microbiol. 2018 Apr 25. pii: JCM.00367-18. doi: 10.1128/JCM.00367.
    PubMed     Abstract available


    January 2018
  68. STELLRECHT KA
    The Drift in Molecular Testing for Influenza: Mutations Affecting Assay Performance.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01531-17. doi: 10.1128/JCM.01531.
    PubMed     Abstract available


    December 2017
  69. LING L, Kaplan SE, Lopez JC, Stiles J, et al
    Parallel validation of three molecular devices for simultaneous detection and identification of influenza A, B and respiratory syncytial viruses.
    J Clin Microbiol. 2017 Dec 20. pii: JCM.01691-17. doi: 10.1128/JCM.01691.
    PubMed     Abstract available


    November 2017
  70. COHEN DM, Kline J, May LS, Harnett GE, et al
    Accurate PCR Detection of Influenza A/B and RSV Using the Cepheid Xpert Flu+RSV Xpress Assay in Point-of-Care Settings: Comparison to Prodesse ProFlu.
    J Clin Microbiol. 2017 Nov 15. pii: JCM.01237-17. doi: 10.1128/JCM.01237.
    PubMed     Abstract available


    October 2017
  71. ZHOU B, Deng YM, Barnes JR, Sessions O, et al
    Multiplex RT-PCR for Simultaneous Surveillance of Influenza A and B Viruses.
    J Clin Microbiol. 2017 Oct 4. pii: JCM.00957-17. doi: 10.1128/JCM.00957.
    PubMed     Abstract available


    August 2017
  72. JURETSCHKO S, Mahony J, Buller RS, Manji R, et al
    Multicenter Clinical Evaluation of the Luminex Aries Flu A/B & RSV Assay for Pediatric and Adult Respiratory Tract Specimens.
    J Clin Microbiol. 2017;55:2431-2438.
    PubMed     Abstract available


    February 2017
  73. SEDLAK RH, Nguyen T, Palileo I, Jerome KR, et al
    Superiority of Digital Reverse Transcription-PCR (RT-PCR) over Real-Time RT-PCR for Quantitation of Highly Divergent Human Rhinoviruses.
    J Clin Microbiol. 2017;55:442-449.
    PubMed     Abstract available


    January 2017
  74. MARTIN BE, Bowman AS, Li L, Nolting JM, et al
    Detection of Antigenic Variants of Swine Subtype H3 Influenza A Viruses from Clinical Samples.
    J Clin Microbiol. 2017 Jan 11. pii: JCM.02049-16. doi: 10.1128/JCM.02049.
    PubMed     Abstract available


    November 2016
  75. HUH HJ, Kim JY, Kwon HJ, Yun SA, et al
    Performance Evaluation of Allplex Respiratory Panel 1, 2, and 3 for the Detection of Respiratory Viruses and Influenza A Virus Subtypes.
    J Clin Microbiol. 2016 Nov 30. pii: JCM.02045.
    PubMed     Abstract available


    October 2016
  76. GRENINGER AL, Zerr DM, Qin X, Adler AL, et al
    Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections.
    J Clin Microbiol. 2016 Oct 26. pii: JCM.01881.
    PubMed     Abstract available


  77. MISHIN VP, Baranovich T, Garten R, Chesnokov A, et al
    A Pyrosequencing-Based Approach to High-Throughput Identification of Influenza A(H3N2) Virus Clades Harboring Antigenic Drift Variants.
    J Clin Microbiol. 2016 Oct 26. pii: JCM.01840.
    PubMed     Abstract available


  78. ZHANG Y, Sakthivel SK, Bramley A, Jain S, et al
    Serology Enhances Molecular Diagnosis of Respiratory Virus Infections Other than Influenza in Children and Adults Hospitalized with Community-Acquired Pneumonia.
    J Clin Microbiol. 2016 Oct 19. pii: JCM.01701.
    PubMed     Abstract available


    February 2016
  79. SHIBIB DR, Matushek SM, Beavis KG, Gawel SH, et al
    BioFire FilmArray Respiratory Panel for Detection of Enterovirus D68.
    J Clin Microbiol. 2016;54:457-9.
    PubMed     Abstract available


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