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Genetics

Free Subscription Articles published in PLoS Comput Biol Retrieve available abstracts of 143 articles: HTML format

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July 2026
1. FAN J
   Another 10 years of PLOS Computational Biology: A data-driven reflection on trends in genomics research.
   PLoS Comput Biol. 2026;22:e1014471.
   PubMed     Abstract available
   
   
   
2. LI W, Yu S, Cheng Y, Wang S, et al
   DeepMethylation: A deep learning framework for tissue-specific DNA methylation prediction and functional variant annotation.
   PLoS Comput Biol. 2026;22:e1014476.
   PubMed     Abstract available
   
   
   
3. ARNOUX J, Mainguy J, Bry L, Fernandez de Grado Q, et al
   Panorama: A robust pangenome-based method for predicting and comparing biological systems across species.
   PLoS Comput Biol. 2026;22:e1013856.
   PubMed     Abstract available
   
   
   
4. ZONG L, Friedler SA, Mathieson S
   Popformer: Learning general signatures of positive selection with a self-supervised transformer.
   PLoS Comput Biol. 2026;22:e1014492.
   PubMed     Abstract available
   
   
   June 2026
5. MAHMUD A, Huang C
   IsoPepTracker: An interactive web application for peptide-driven isoform analysis.
   PLoS Comput Biol. 2026;22:e1014324.
   PubMed     Abstract available
   
   
   
6. WITCZAK D, Sychla K, Wysocka J, Laskowski A, et al
   GrassSV - hybrid method to detect structural variants in high throughput DNA-seq data.
   PLoS Comput Biol. 2026;22:e1014406.
   PubMed     Abstract available
   
   
   
7. GUNTHER E, Camara PG
   Exploring the structural lexicon of the Proteome via Metric Geometry.
   PLoS Comput Biol. 2026;22:e1014487.
   PubMed     Abstract available
   
   
   May 2026
8. KWON J, Li K, Warren JL, Pandya S, et al
   Utilizing virus genomic surveillance to predict vaccine effectiveness.
   PLoS Comput Biol. 2026;22:e1014329.
   PubMed     Abstract available
   
   
   
9. HUANG Y, Gan Y, Gong X
   scHG: A supercell framework with high-order graph learning enables scalable multi-omics analysis.
   PLoS Comput Biol. 2026;22:e1013851.
   PubMed     Abstract available
   
   
   
10. MOTH CW, Sheehan JH, Al Mamun A, Sivley RM, et al
    VUStruct: A compute pipeline for high throughput and personalized structural biology.
    PLoS Comput Biol. 2026;22:e1014183.
    PubMed     Abstract available
    
    
    
11. PETROVSKIY DV, Nikolsky KS, Rudnev VR, Kulikova LI, et al
    PowerNovo2: A generative flow-based approach to non-autoregressive de novo peptide sequencing.
    PLoS Comput Biol. 2026;22:e1014298.
    PubMed     Abstract available
    
    
    
12. KAZEMI P, Sanchez Olivares I, Warren RL, Coombe L, et al
    AIEdit: Alignment-free genome assembly polisher trained on spaced seed match patterns.
    PLoS Comput Biol. 2026;22:e1014245.
    PubMed     Abstract available
    
    
    
13. TEYSSIER N, Dobin A
    BINSEQ: A family of high-performance binary formats for nucleotide sequences.
    PLoS Comput Biol. 2026;22:e1014181.
    PubMed     Abstract available
    
    
    April 2026
14. ZHANG W, Yu Y, Zheng X, Shen J, et al
    Clustering single-cell multi-omics data via weighted distance penalty and adaptive consistent graph regularization.
    PLoS Comput Biol. 2026;22:e1014110.
    PubMed     Abstract available
    
    
    
15. KAZEMI P, Coombe L, Warren RL, Birol I, et al
    ntStat: k-mer characterization using occurrence statistics in raw sequencing data.
    PLoS Comput Biol. 2026;22:e1014158.
    PubMed     Abstract available
    
    
    
16. BORA A, McKenzie M, Ziemann M
    Ten common mistakes that could ruin your enrichment analysis.
    PLoS Comput Biol. 2026;22:e1014122.
    PubMed     Abstract available
    
    
    
17. LI G, Jianhan F, Gu J, Wang Y, et al
    Systematic prioritization of potential therapeutic targets for glomerulonephritis using multi-omics Mendelian randomization.
    PLoS Comput Biol. 2026;22:e1014174.
    PubMed     Abstract available
    
    
    
18. LI H, Lin C, Liu L, Lyu J, et al
    CASER: A semi-supervised model with multi-omics data integration prioritizes cancer-associated epigenetic regulator genes.
    PLoS Comput Biol. 2026;22:e1014253.
    PubMed     Abstract available
    
    
    
19. AHN S, Fu W, van Gerwen M, Liu L, et al
    A multi-omics framework for survival mediation analysis of high-dimensional proteogenomic data.
    PLoS Comput Biol. 2026;22:e1014217.
    PubMed     Abstract available
    
    
    March 2026
20. LIAO K, Du D, Li J, Huang J, et al
    Interpretable integration of unpaired multi-omics for Alzheimer's diagnosis via cross-modal transformer reconstruction.
    PLoS Comput Biol. 2026;22:e1014074.
    PubMed     Abstract available
    
    
    
21. ZHAO M, Tang X, Li J, Liang C, et al
    MultiPert: An adversarial alignment and dual attention framework for single-cell multi-omics perturbation prediction.
    PLoS Comput Biol. 2026;22:e1014054.
    PubMed     Abstract available
    
    
    
22. PUCCI N, Kaan AM, Ujcic-Voortman J, Verhoeff AP, et al
    Unique ecology of co-occurring functionally and phylogenetically undescribed species in the infant oral microbiome.
    PLoS Comput Biol. 2026;22:e1013185.
    PubMed     Abstract available
    
    
    
23. YANG M, Huang ZA, Zheng Z, Liu Y, et al
    HiCMamba: Enhancing Hi-C resolution and identifying 3D genome structures with state space modeling.
    PLoS Comput Biol. 2026;22:e1014057.
    PubMed     Abstract available
    
    
    
24. SOLEYMANI F, Razaghi-Moghadam Z, Nikoloski Z
    Accurate prediction of flux distributions compatible with metabolite concentration effects in genome-scale metabolic networks.
    PLoS Comput Biol. 2026;22:e1014066.
    PubMed     Abstract available
    
    
    
25. ANTONOPOULOS K, Nordenstorm O, Nilsson A
    Zero-shot prediction of drug responses using biologically informed neural networks trained on phosphoproteomic timeseries.
    PLoS Comput Biol. 2026;22:e1014100.
    PubMed     Abstract available
    
    
    
26. MARTIN EA, Patchigolla V, Fu AQ
    Approximate Bayesian inference of directed acyclic graphs in biology with flexible priors on edge states.
    PLoS Comput Biol. 2026;22:e1014039.
    PubMed     Abstract available
    
    
    February 2026
27. GUO Y, Mallona I, Robinson MD, Li L, et al
    BiCLUM: Bilateral contrastive learning for unpaired single-cell multi-omics integration.
    PLoS Comput Biol. 2026;22:e1013932.
    PubMed     Abstract available
    
    
    
28. HARTMAN E, Malmstrom J, Wallin J
    Degradation graphs reveal hidden proteolytic activity in peptidomes.
    PLoS Comput Biol. 2026;22:e1013972.
    PubMed     Abstract available
    
    
    
29. BACON WA, Batut B, Srikakulam SK, Zierep P, et al
    Ten common misconceptions about Galaxy (and why they are wrong!).
    PLoS Comput Biol. 2026;22:e1013869.
    PubMed     Abstract available
    
    
    
30. CHANTZI N, Mouratidis I, Georgakopoulos-Soares I
    Zimin patterns in genomes.
    PLoS Comput Biol. 2026;22:e1013909.
    PubMed     Abstract available
    
    
    
31. BALOYAN A, Konecny T, Hovhannisyan E, Zadirako N, et al
    A topological map of the genetic components of grapevine-Admixture meets SOMmelier machine learning.
    PLoS Comput Biol. 2026;22:e1013882.
    PubMed     Abstract available
    
    
    
32. COLBY JM, Krantz BA
    A dynamical anthrax toxin nanopore biosensor for high-fidelity single-peptide classification.
    PLoS Comput Biol. 2026;22:e1014019.
    PubMed     Abstract available
    
    
    
33. ZHANG S, Lu Y, Li P, Wu J, et al
    CA-CAE: A deep learning-based multi-omics model for pan-cancer subtype classification and prognosis prediction.
    PLoS Comput Biol. 2026;22:e1014015.
    PubMed     Abstract available
    
    
    
34. ZHOU H, Edelman B, Skolnick J
    MENDELSEEK: An algorithm that predicts mendelian genes and elucidates what makes them special.
    PLoS Comput Biol. 2026;22:e1013992.
    PubMed     Abstract available
    
    
    January 2026
35. BURKE D, Raychaudhuri J, Chuong E, Taylor W, et al
    TEPEAK: A novel method for identifying and characterizing polymorphic transposable elements in non-model species populations.
    PLoS Comput Biol. 2026;22:e1013122.
    PubMed     Abstract available
    
    
    
36. KARAGIANNIS TT, Chen Y, Bald S, Tai A, et al
    Integrative analysis across metagenomic taxonomic classifiers: A case study of the gut microbiome in aging and longevity in the Integrative Longevity Omics Study.
    PLoS Comput Biol. 2026;22:e1013883.
    PubMed     Abstract available
    
    
    
37. PELLOW R, Comeron JM
    A wavelet-based approach generates quantitative, scale-free and hierarchical descriptions of 3D genome structures and new biological insights.
    PLoS Comput Biol. 2026;22:e1013887.
    PubMed     Abstract available
    
    
    
38. ROY A, Zhang X
    Powerful large scale inference in high dimensional mediation analysis.
    PLoS Comput Biol. 2026;22:e1013880.
    PubMed     Abstract available
    
    
    
39. MIAO J, Li D
    TEvarSim: A genome simulator for transposable element (TE) variants.
    PLoS Comput Biol. 2026;22:e1013933.
    PubMed     Abstract available
    
    
    
40. KRZYNOWEK A, Snoeks J, Faust K
    PlasticEnz: An integrated database and screening tool combining homology and machine learning to identify plastic-degrading enzymes in meta-omics datasets.
    PLoS Comput Biol. 2026;22:e1013892.
    PubMed     Abstract available
    
    
    
41. WEN G, Li L
    CoFormerSurv: Collaborative transformer for multi-omics survival analysis.
    PLoS Comput Biol. 2026;22:e1013875.
    PubMed     Abstract available
    
    
    December 2025
42. CHICCO D, Jurman G
    Comment on "Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper".
    PLoS Comput Biol. 2025;21:e1013673.
    PubMed     Abstract available
    
    
    
43. REYNOLDS J, Pan C
    Benchmarking interpretability of deep learning for predictive genomics: Recall, precision, and variability of feature attribution.
    PLoS Comput Biol. 2025;21:e1013784.
    PubMed     Abstract available
    
    
    
44. DODERO-ROJAS E, Mendieta A, Fehlis Y, Mayala N, et al
    Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenome.
    PLoS Comput Biol. 2025;21:e1012326.
    PubMed     Abstract available
    
    
    
45. COLEMAN S, Breckels L, Waller RF, Lilley KS, et al
    Semi-supervised Bayesian integration of multiple spatial proteomics datasets.
    PLoS Comput Biol. 2025;21:e1013799.
    PubMed     Abstract available
    
    
    
46. CHEN D, Storey JD
    Coancestry superposed on admixed populations yields measures of relatedness at individual-level resolution.
    PLoS Comput Biol. 2025;21:e1013848.
    PubMed     Abstract available
    
    
    November 2025
47. YIN Y, Zhuang L, Wang Y, Shi Y, et al
    Branch-specific gene discovery in cell differentiation using multi-omics graph attention.
    PLoS Comput Biol. 2025;21:e1013664.
    PubMed     Abstract available
    
    
    October 2025
48. MI Y, Cahill B, Yallapragada VVB, Rotem R, et al
    AI-driven discovery of novel extracellular matrix biomarkers in pelvic organ prolapse.
    PLoS Comput Biol. 2025;21:e1013483.
    PubMed     Abstract available
    
    
    
49. LIANG X, Xiao S, Ba L, Feng Y, et al
    Spatial domain identification method based on multi-view graph convolutional network and contrastive learning.
    PLoS Comput Biol. 2025;21:e1013369.
    PubMed     Abstract available
    
    
    September 2025
50. MULLER NF, Bouckaert RR, Wu CH, Bedford T, et al
    MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions.
    PLoS Comput Biol. 2025;21:e1013421.
    PubMed     Abstract available
    
    
    
51. XIAO T, Liu Y, Hu K, Guo K, et al
    Drug-induced liver injury prediction based on graph convolutional networks and toxicogenomics.
    PLoS Comput Biol. 2025;21:e1013423.
    PubMed     Abstract available
    
    
    
52. ZAK J, Newman I, Montiel Garcia DJ, Parisi D, et al
    Catalyzing computational biology research at an academic institute through an interest network.
    PLoS Comput Biol. 2025;21:e1013453.
    PubMed     Abstract available
    
    
    
53. YANG J, Grant GR, Brooks TG
    Generating correlated data for omics simulation.
    PLoS Comput Biol. 2025;21:e1013392.
    PubMed     Abstract available
    
    
    
54. TRUONG L, Truong T, Nguyen H
    OmnibusX: A unified platform for accessible multi-omics analysis.
    PLoS Comput Biol. 2025;21:e1013480.
    PubMed     Abstract available
    
    
    
55. WANG X, Guan Y, Gao W, Lai X, et al
    MRDtarget: A heuristic Gaussian approach for optimizing targeted capture regions to enhance Minimal Residual Disease detection.
    PLoS Comput Biol. 2025;21:e1013443.
    PubMed     Abstract available
    
    
    
56. MA Z, Chen R, Feng Z
    Exploration of potential novel drug targets for rheumatoid arthritis by plasma proteome screening.
    PLoS Comput Biol. 2025;21:e1013333.
    PubMed     Abstract available
    
    
    
57. GAO C, Yang C, Zhang L
    A graph neural network-based spatial multi-omics data integration method for deciphering spatial domains.
    PLoS Comput Biol. 2025;21:e1013546.
    PubMed     Abstract available
    
    
    
58. YUAN R, Rong Z, Hu H, Liu T, et al
    Harmony-based data integration for distributed single-cell multi-omics data.
    PLoS Comput Biol. 2025;21:e1013526.
    PubMed     Abstract available
    
    
    
59. LUCAS A, Schaffer DE, Wickramasinghe J, Auslander N, et al
    kMermaid: Ultrafast metagenomic read assignment to protein clusters by hashing of amino acid k-mer frequencies.
    PLoS Comput Biol. 2025;21:e1013470.
    PubMed     Abstract available
    
    
    August 2025
60. ROBERTSON J, Consul S, Vikalo H
    NextVir: Enabling classification of tumor-causing viruses with genomic foundation models.
    PLoS Comput Biol. 2025;21:e1013360.
    PubMed     Abstract available
    
    
    
61. YUAN H, Liu M, Qiu Y, Ching WK, et al
    PLNMFG: Pseudo-label guided non-negative matrix factorization model with graph constraint for single-cell multi-omics data clustering.
    PLoS Comput Biol. 2025;21:e1013375.
    PubMed     Abstract available
    
    
    July 2025
62. DONG X, Jiao D, Xue H, Fan S, et al
    APAV: An advanced pangenome analysis and visualization toolkit.
    PLoS Comput Biol. 2025;21:e1013288.
    PubMed     Abstract available
    
    
    June 2025
63. WADDEL H, Koelle K, Lau MSY
    ScITree: Scalable Bayesian inference of transmission tree from epidemiological and genomic data.
    PLoS Comput Biol. 2025;21:e1012657.
    PubMed     Abstract available
    
    
    May 2025
64. GOLDMAN M, Zhao C, Pollard KS
    Improved detection of microbiome-disease associations via population structure-aware generalized linear mixed effects models (microSLAM).
    PLoS Comput Biol. 2025;21:e1012277.
    PubMed     Abstract available
    
    
    April 2025
65. SHEN C, Wedell E, Pop M, Warnow T, et al
    TIPP3 and TIPP3-fast: Improved abundance profiling in metagenomics.
    PLoS Comput Biol. 2025;21:e1012593.
    PubMed     Abstract available
    
    
    
66. LIU W, Pratte KA, Castaldi PJ, Hersh C, et al
    A generalized higher-order correlation analysis framework for multi-omics network inference.
    PLoS Comput Biol. 2025;21:e1011842.
    PubMed     Abstract available
    
    
    
67. ROBERTS I, Everitt RG, Koskela J, Didelot X, et al
    Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent Model.
    PLoS Comput Biol. 2025;21:e1012995.
    PubMed     Abstract available
    
    
    
68. NOURBAKHSH M, Zheng Y, Noor H, Chen H, et al
    Revealing cancer driver genes through integrative transcriptomic and epigenomic analyses with Moonlight.
    PLoS Comput Biol. 2025;21:e1012999.
    PubMed     Abstract available
    
    
    March 2025
69. RYAN B, Marioni R, Simpson TI
    An integrative network approach for longitudinal stratification in Parkinson's disease.
    PLoS Comput Biol. 2025;21:e1012857.
    PubMed     Abstract available
    
    
    
70. HAIMAN ZB, Key A, D'Alessandro A, Palsson BO, et al
    RBC-GEM: A genome-scale metabolic model for systems biology of the human red blood cell.
    PLoS Comput Biol. 2025;21:e1012109.
    PubMed     Abstract available
    
    
    
71. WU Y, Chen M, Qin Y
    Anticancer drug response prediction integrating multi-omics pathway-based difference features and multiple deep learning techniques.
    PLoS Comput Biol. 2025;21:e1012905.
    PubMed     Abstract available
    
    
    February 2025
72. KHODASEVICH D, Holland N, van der Laan L, Cardenas A, et al
    A SuperLearner-based pipeline for the development of DNA methylation-derived predictors of phenotypic traits.
    PLoS Comput Biol. 2025;21:e1012768.
    PubMed     Abstract available
    
    
    
73. MIAO R, Yu HY, Zhong BJ, Sun HX, et al
    AWGE-ESPCA: An edge sparse PCA model based on adaptive noise elimination regularization and weighted gene network for Hermetia illucens genomic data analysis.
    PLoS Comput Biol. 2025;21:e1012773.
    PubMed     Abstract available
    
    
    January 2025
74. PAN L, Gao Q, Wei K, Yu Y, et al
    A robust transfer learning approach for high-dimensional linear regression to support integration of multi-source gene expression data.
    PLoS Comput Biol. 2025;21:e1012739.
    PubMed     Abstract available
    
    
    
75. DAOUD A, Ben-Hur A
    The role of chromatin state in intron retention: A case study in leveraging large scale deep learning models.
    PLoS Comput Biol. 2025;21:e1012755.
    PubMed     Abstract available
    
    
    
76. FANG M, Gorin G, Pachter L
    Trajectory inference from single-cell genomics data with a process time model.
    PLoS Comput Biol. 2025;21:e1012752.
    PubMed     Abstract available
    
    
    
77. GORSTEIN E, Aghdam R, Solis-Lemus C
    HighDimMixedModels.jl: Robust high-dimensional mixed-effects models across omics data.
    PLoS Comput Biol. 2025;21:e1012143.
    PubMed     Abstract available
    
    
    December 2024
78. LAN W, Ling T, Chen Q, Zheng R, et al
    scMoMtF: An interpretable multitask learning framework for single-cell multi-omics data analysis.
    PLoS Comput Biol. 2024;20:e1012679.
    PubMed     Abstract available
    
    
    
79. ESCRIBA-MONTAGUT X, Marcon Y, Anguita-Ruiz A, Avraam D, et al
    Federated privacy-protected meta- and mega-omics data analysis in multi-center studies with a fully open-source analytic platform.
    PLoS Comput Biol. 2024;20:e1012626.
    PubMed     Abstract available
    
    
    
80. CICCOLELLA S, Cozzi D, Della Vedova G, Kuria SN, et al
    Differential quantification of alternative splicing events on spliced pangenome graphs.
    PLoS Comput Biol. 2024;20:e1012665.
    PubMed     Abstract available
    
    
    
81. ABHARI N, Colijn C, Mooers A, Tupper P, et al
    Measuring genetic diversity across populations.
    PLoS Comput Biol. 2024;20:e1012651.
    PubMed     Abstract available
    
    
    
82. ZUNIGA NR, Earls NE, Denos AEA, Elison JM, et al
    Quantitative and Kinetic Proteomics Reveal ApoE Isoform-dependent Proteostasis Adaptations in Mouse Brain.
    PLoS Comput Biol. 2024;20:e1012407.
    PubMed     Abstract available
    
    
    
83. ORCALES F, Moctezuma Tan L, Johnson-Hagler M, Suntay JM, et al
    Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper.
    PLoS Comput Biol. 2024;20:e1012579.
    PubMed     Abstract available
    
    
    
84. BU Y, Liang J, Li Z, Wang J, et al
    Cancer molecular subtyping using limited multi-omics data with missingness.
    PLoS Comput Biol. 2024;20:e1012710.
    PubMed     Abstract available
    
    
    November 2024
85. LI S, Gulisija D, Carja O
    The evolutionary cost of homophily: Social stratification facilitates stable variant coexistence and increased rates of evolution in host-associated pathogens.
    PLoS Comput Biol. 2024;20:e1012619.
    PubMed     Abstract available
    
    
    October 2024
86. CHEN L, Huang ZH, Sun Y, Domaratzki M, et al
    Conditional probabilistic diffusion model driven synthetic radiogenomic applications in breast cancer.
    PLoS Comput Biol. 2024;20:e1012490.
    PubMed     Abstract available
    
    
    
87. ROCHA U, Kasmanas JC, Toscan R, Sanches DS, et al
    Simulation of 69 microbial communities indicates sequencing depth and false positives are major drivers of bias in prokaryotic metagenome-assembled genome recovery.
    PLoS Comput Biol. 2024;20:e1012530.
    PubMed     Abstract available
    
    
    
88. SILVA GAA, Harder AM, Kirksey KB, Mathur S, et al
    Detectability of runs of homozygosity is influenced by analysis parameters and population-specific demographic history.
    PLoS Comput Biol. 2024;20:e1012566.
    PubMed     Abstract available
    
    
    September 2024
89. PLAISIER SB, Alarid DO, Denning JA, Brownell SE, et al
    Design and implementation of an asynchronous online course-based undergraduate research experience (CURE) in computational genomics.
    PLoS Comput Biol. 2024;20:e1012384.
    PubMed     Abstract available
    
    
    
90. ABBARA A, Pagani L, Garcia-Pareja C, Bitbol AF, et al
    Mutant fate in spatially structured populations on graphs: Connecting models to experiments.
    PLoS Comput Biol. 2024;20:e1012424.
    PubMed     Abstract available
    
    
    
91. LE SUEUR C, Rattray M, Savitski M
    GPMelt: A hierarchical Gaussian process framework to explore the dark meltome of thermal proteome profiling experiments.
    PLoS Comput Biol. 2024;20:e1011632.
    PubMed     Abstract available
    
    
    
92. AMARAL AS, Devos DP
    The neglected giants: Uncovering the prevalence and functional groups of huge proteins in proteomes.
    PLoS Comput Biol. 2024;20:e1012459.
    PubMed     Abstract available
    
    
    August 2024
93. NEY A, Nene NR, Sedlak E, Acedo P, et al
    Identification of a serum proteomic biomarker panel using diagnosis specific ensemble learning and symptoms for early pancreatic cancer detection.
    PLoS Comput Biol. 2024;20:e1012408.
    PubMed     Abstract available
    
    
    
94. RINTALA TJ, Fortino V
    COPS: A novel platform for multi-omic disease subtype discovery via robust multi-objective evaluation of clustering algorithms.
    PLoS Comput Biol. 2024;20:e1012275.
    PubMed     Abstract available
    
    
    
95. SHI P, Han J, Zhang Y, Li G, et al
    IMI-driver: Integrating multi-level gene networks and multi-omics for cancer driver gene identification.
    PLoS Comput Biol. 2024;20:e1012389.
    PubMed     Abstract available
    
    
    July 2024
96. CHEN AA, Clark K, Dewey BE, DuVal A, et al
    PARE: A framework for removal of confounding effects from any distance-based dimension reduction method.
    PLoS Comput Biol. 2024;20:e1012241.
    PubMed     Abstract available
    
    
    June 2024
97. BERGMAN S, Tuller T
    Strong association between genomic 3D structure and CRISPR cleavage efficiency.
    PLoS Comput Biol. 2024;20:e1012214.
    PubMed     Abstract available
    
    
    May 2024
98. ABDENNUR N, Abraham S, Fudenberg G, Flyamer IM, et al
    Cooltools: Enabling high-resolution Hi-C analysis in Python.
    PLoS Comput Biol. 2024;20:e1012067.
    PubMed     Abstract available
    
    
    
99. GORMAN ED, Lladser ME
    Interpretable metric learning in comparative metagenomics: The adaptive Haar-like distance.
    PLoS Comput Biol. 2024;20:e1011543.
    PubMed     Abstract available
    
    
    
100. CASCARINA SM, Ross ED
     Identification of Low-Complexity Domains by Compositional Signatures Reveals Class-Specific Frequencies and Functions Across the Domains of Life.
     PLoS Comput Biol. 2024;20:e1011372.
     PubMed     Abstract available
     
     
     
101. WANG M, Yan X, Dong Y, Li X, et al
     Machine learning and multi-omics data reveal driver gene-based molecular subtypes in hepatocellular carcinoma for precision treatment.
     PLoS Comput Biol. 2024;20:e1012113.
     PubMed     Abstract available
     
     
     April 2024
102. GIUDICE L, Mohamed A, Malm T
     StellarPath: Hierarchical-vertical multi-omics classifier synergizes stable markers and interpretable similarity networks for patient profiling.
     PLoS Comput Biol. 2024;20:e1012022.
     PubMed     Abstract available
     
     
     March 2024
103. MARTIN NS, Camargo CQ, Louis AA
     Bias in the arrival of variation can dominate over natural selection in Richard Dawkins's biomorphs.
     PLoS Comput Biol. 2024;20:e1011893.
     PubMed     Abstract available
     
     
     
104. WIEDER C, Cooke J, Frainay C, Poupin N, et al
     PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.
     PLoS Comput Biol. 2024;20:e1011814.
     PubMed     Abstract available
     
     
     February 2024
105. LIU X, Gillis N, Jiang C, McCofie A, et al
     An Epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level.
     PLoS Comput Biol. 2024;20:e1011873.
     PubMed     Abstract available
     
     
     
106. DALL'OLIO D, Strang E, Turki AT, Tettero JM, et al
     Covering Hierarchical Dirichlet Mixture Models on binary data to enhance genomic stratifications in onco-hematology.
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116. KIPEN J, Jalden J
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119. CECIL RM, Sugden LA
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120. GAO Y, Sun F
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128. WANG N, Khan S, Elo LL
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