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	COVID-19: Daily Top 10 Papers

Genetics

Free Subscription 11.10.2021 4 Nat Rev Genet 2 Nature 18 PLoS One 2 Proc Natl Acad Sci U S A

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Single Articles

Nat Rev Genet

1. MACKEN WL, Lucassen AM, Hanna MG, Pitceathly RDS, et al
   Mitochondrial DNA variants in genomic data: diagnostic uplifts and predictive implications.
   Nat Rev Genet. 2021;22:547-548.
   PubMed        
   
   
2. DE COSTER W, Weissensteiner MH, Sedlazeck FJ
   Towards population-scale long-read sequencing.
   Nat Rev Genet. 2021;22:572-587.
   PubMed         Abstract available
   
   
3. DELOT EC, Vilain E
   Towards improved genetic diagnosis of human differences of sex development.
   Nat Rev Genet. 2021;22:588-602.
   PubMed         Abstract available
   
   
4. MEDEMA MH, de Rond T, Moore BS
   Mining genomes to illuminate the specialized chemistry of life.
   Nat Rev Genet. 2021;22:553-571.
   PubMed         Abstract available
   
   

   
   Nature

5. ANNAVAJHALA MK, Mohri H, Wang P, Nair M, et al
   Emergence and expansion of SARS-CoV-2 B.1.526 after identification in New York.
   Nature. 2021 Aug 24. pii: 10.1038/s41586-021-03908.
   PubMed         Abstract available
   
   
6. HAN S, Van Treuren W, Fischer CR, Merrill BD, et al
   A metabolomics pipeline for the mechanistic interrogation of the gut microbiome.
   Nature. 2021;595:415-420.
   PubMed         Abstract available
   
   

   
   PLoS One

7. PARK S, Wijeratne AJ, Moon Y, Waterland NL, et al
   Time-course transcriptomic analysis of Petunia xhybrida leaves under water deficit stress using RNA sequencing.
   PLoS One. 2021;16:e0250284.
   PubMed         Abstract available
   
   
8. CI J, Wang X, Wang Q, Zhao F, et al
   Genome-wide analysis of gibberellin-dioxygenases gene family and their responses to GA applications in maize.
   PLoS One. 2021;16:e0250349.
   PubMed         Abstract available
   
   
9. SUN N, Xie YF, Wu Y, Guo N, et al
   Genome-wide identification of ABCC gene family and their expression analysis in pigment deposition of fiber in brown cotton (Gossypium hirsutum).
   PLoS One. 2021;16:e0246649.
   PubMed         Abstract available
   
   
10. HSU CH, Tomiyasu H, Liao CH, Lin CS, et al
    Genome-wide DNA methylation and RNA-seq analyses identify genes and pathways associated with doxorubicin resistance in a canine diffuse large B-cell lymphoma cell line.
    PLoS One. 2021;16:e0250013.
    PubMed         Abstract available
    
    
11. MARTINEZ-SANUDO I, Perin C, Cavaletto G, Ortis G, et al
    Studying genetic population structure to shed light on the demographic explosion of the rare species Barbitistes vicetinus (Orthoptera, Tettigoniidae).
    PLoS One. 2021;16:e0250507.
    PubMed         Abstract available
    
    
12. DELGADO-SUAREZ EJ, Palos-Guiterrez T, Ruiz-Lopez FA, Hernandez Perez CF, et al
    Genomic surveillance of antimicrobial resistance shows cattle and poultry are a moderate source of multi-drug resistant non-typhoidal Salmonella in Mexico.
    PLoS One. 2021;16:e0243681.
    PubMed         Abstract available
    
    
13. OSOZAWA S, Kanai K, Fukuda H, Wakabayashi J, et al
    Phylogeography of Ryukyu insular cicadas: Extensive vicariance by island isolation vs accidental dispersal by super typhoon.
    PLoS One. 2021;16:e0244342.
    PubMed         Abstract available
    
    
14. LI Y, Zhao M, Zhang Z
    Quantitative proteomics reveals the antifungal effect of canthin-6-one isolated from Ailanthus altissima against Fusarium oxysporum f. sp. cucumerinum in vitro.
    PLoS One. 2021;16:e0250712.
    PubMed         Abstract available
    
    
15. BATISTA LG, Gaynor RC, Margarido GRA, Byrne T, et al
    Long-term comparison between index selection and optimal independent culling in plant breeding programs with genomic prediction.
    PLoS One. 2021;16:e0235554.
    PubMed         Abstract available
    
    
16. ANTON BP, Fomenkov A, Wu V, Roberts RJ, et al
    Genome-wide identification of 5-methylcytosine sites in bacterial genomes by high-throughput sequencing of MspJI restriction fragments.
    PLoS One. 2021;16:e0247541.
    PubMed         Abstract available
    
    
17. NIGSCH A, Robbe-Austerman S, Stuber TP, Pavinski Bitar PD, et al
    Who infects whom?-Reconstructing infection chains of Mycobacterium avium ssp. paratuberculosis in an endemically infected dairy herd by use of genomic data.
    PLoS One. 2021;16:e0246983.
    PubMed         Abstract available
    
    
18. RAWSTHORNE H, Calahorro F, Holden-Dye L, O' Connor V, et al
    Investigating autism associated genes in C. elegans reveals candidates with a role in social behaviour.
    PLoS One. 2021;16:e0243121.
    PubMed         Abstract available
    
    
19. ELY B
    Genomic GC content drifts downward in most bacterial genomes.
    PLoS One. 2021;16:e0244163.
    PubMed         Abstract available
    
    
20. SOBOLEV VV, Mezentsev AV, Ziganshin RH, Soboleva AG, et al
    LC-MS/MS analysis of lesional and normally looking psoriatic skin reveals significant changes in protein metabolism and RNA processing.
    PLoS One. 2021;16:e0240956.
    PubMed         Abstract available
    
    
21. MANOMOHAN V, Saravanan R, Pichler R, Murali N, et al
    Legacy of draught cattle breeds of South India: Insights into population structure, genetic admixture and maternal origin.
    PLoS One. 2021;16:e0246497.
    PubMed         Abstract available
    
    
22. GATTO CAFR, Cohn-Haft M
    Spatial Congruence Analysis (SCAN): A method for detecting biogeographical patterns based on species range congruences.
    PLoS One. 2021;16:e0245818.
    PubMed         Abstract available
    
    
23. O'SHEA R, Taylor N, Crook A, Jacobs C, et al
    Health system interventions to integrate genetic testing in routine oncology services: A systematic review.
    PLoS One. 2021;16:e0250379.
    PubMed         Abstract available
    
    
24. ARIOLI A, Dagliati A, Geary B, Peek N, et al
    OptiMissP: A dashboard to assess missingness in proteomic data-independent acquisition mass spectrometry.
    PLoS One. 2021;16:e0249771.
    PubMed         Abstract available
    
    

    
    Proc Natl Acad Sci U S A

25. SAGAR V, Kaelin CB, Natesh M, Reddy PA, et al
    High frequency of an otherwise rare phenotype in a small and isolated tiger population.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed         Abstract available
    
    
26. FEUERBORN TR, Carmagnini A, Losey RJ, Nomokonova T, et al
    Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed         Abstract available
    
    

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