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	COVID-19: Daily Top 10 Papers

Genetics

Free Subscription 01.11.2021 1 Epidemiol Infect 1 FEMS Microbiol Lett 2 Nature 1 PLoS Comput Biol 3 PLoS Genet 12 PLoS One 1 Proc Natl Acad Sci U S A 1 Science

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Single Articles

Epidemiol Infect

1. BARRATT J, Houghton K, Richins T, Straily A, et al
   Investigation of US Cyclospora cayetanensis outbreaks in 2019 and evaluation of an improved Cyclospora genotyping system against 2019 cyclosporiasis outbreak clusters.
   Epidemiol Infect. 2021;149:e214.
   PubMed         Abstract available
   
   

   
   FEMS Microbiol Lett

2. TOHYA M, Dozaki S, Ishida-Kuroki K, Watanabe T, et al
   Basis of the persistence of capsule-negative Streptococcus suis in porcine endocarditis inferred from comparative genomics.
   FEMS Microbiol Lett. 2021;368.
   PubMed         Abstract available
   
   

   
   Nature

3. IOANNIDIS AG, Blanco-Portillo J, Sandoval K, Hagelberg E, et al
   Paths and timings of the peopling of Polynesia inferred from genomic networks.
   Nature. 2021;597:522-526.
   PubMed         Abstract available
   
   
4. LI R, Di L, Li J, Fan W, et al
   A body map of somatic mutagenesis in morphologically normal human tissues.
   Nature. 2021;597:398-403.
   PubMed         Abstract available
   
   

   
   PLoS Comput Biol

5. LIU Y, Li J
   Hamming-shifting graph of genomic short reads: Efficient construction and its application for compression.
   PLoS Comput Biol. 2021;17:e1009229.
   PubMed         Abstract available
   
   

   
   PLoS Genet

6. ZHENG NS, Stone CA, Jiang L, Shaffer CM, et al
   High-throughput framework for genetic analyses of adverse drug reactions using electronic health records.
   PLoS Genet. 2021;17:e1009593.
   PubMed         Abstract available
   
   
7. FUCHS S, Kucklick M, Lehmann E, Beckmann A, et al
   Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach.
   PLoS Genet. 2021;17:e1009585.
   PubMed         Abstract available
   
   
8. MACK KL, Jaggard JB, Persons JL, Roback EY, et al
   Repeated evolution of circadian clock dysregulation in cavefish populations.
   PLoS Genet. 2021;17:e1009642.
   PubMed         Abstract available
   
   

   
   PLoS One

9. RABAGLINO MB, O'Doherty A, Bojsen-Moller Secher J, Lonergan P, et al
   Application of multi-omics data integration and machine learning approaches to identify epigenetic and transcriptomic differences between in vitro and in vivo produced bovine embryos.
   PLoS One. 2021;16:e0252096.
   PubMed         Abstract available
   
   
10. JOHNSON KR, Mallon BS, Fann YC, Chen KG, et al
    Multivariate meta-analysis reveals global transcriptomic signatures underlying distinct human naive-like pluripotent states.
    PLoS One. 2021;16:e0251461.
    PubMed         Abstract available
    
    
11. RAMIREZ RIOS S, Torres A, Diemer H, Collin-Faure V, et al
    A proteomic-informed view of the changes induced by loss of cellular adherence: The example of mouse macrophages.
    PLoS One. 2021;16:e0252450.
    PubMed         Abstract available
    
    
12. CARRILLO-HERNANDEZ MY, Ruiz-Saenz J, Jaimes-Villamizar L, Robledo-Restrepo SM, et al
    Phylogenetic and evolutionary analysis of dengue virus serotypes circulating at the Colombian-Venezuelan border during 2015-2016 and 2018-2019.
    PLoS One. 2021;16:e0252379.
    PubMed         Abstract available
    
    
13. SILVA DE OLIVEIRA M, Thyeska Castro Alves J, Henrique Caracciolo Gomes de Sa P, Veras AAO, et al
    PAN2HGENE-tool for comparative analysis and identifying new gene products.
    PLoS One. 2021;16:e0252414.
    PubMed         Abstract available
    
    
14. CHALAR C, Clivio G, Montagne J, Costabile A, et al
    Embryonic developmental arrest in the annual killifish Austrolebias charrua: A proteomic approach to diapause III.
    PLoS One. 2021;16:e0251820.
    PubMed         Abstract available
    
    
15. NGWE TUN MM, Kyaw AK, Nabeshima T, Soe AM, et al
    Detection of genotype-1 of dengue virus serotype 3 for the first time and complete genome analysis of dengue viruses during the 2018 epidemic in Mandalay, Upper Myanmar.
    PLoS One. 2021;16:e0251314.
    PubMed         Abstract available
    
    
16. TABASSUM A, Bag S, Suassuna ND, Conner KN, et al
    Genome analysis of cotton leafroll dwarf virus reveals variability in the silencing suppressor protein, genotypes and genomic recombinants in the USA.
    PLoS One. 2021;16:e0252523.
    PubMed         Abstract available
    
    
17. RAHMAN M, Guo Q, Baten A, Mauleon R, et al
    Shotgun proteomics of Brassica rapa seed proteins identifies vicilin as a major seed storage protein in the mature seed.
    PLoS One. 2021;16:e0253384.
    PubMed         Abstract available
    
    
18. DIAZ BG, Zucchi MI, Alves-Pereira A, de Almeida CP, et al
    Genome-wide SNP analysis to assess the genetic population structure and diversity of Acrocomia species.
    PLoS One. 2021;16:e0241025.
    PubMed         Abstract available
    
    
19. MACKAY-SMITH A, Dornon MK, Lucier R, Okimoto A, et al
    Host-specific gene expression as a tool for introduction success in Naupactus parthenogenetic weevils.
    PLoS One. 2021;16:e0248202.
    PubMed         Abstract available
    
    
20. KESIMOGLU ZN, Bozdag S
    Crinet: A computational tool to infer genome-wide competing endogenous RNA (ceRNA) interactions.
    PLoS One. 2021;16:e0251399.
    PubMed         Abstract available
    
    

    
    Proc Natl Acad Sci U S A

21. LARENA M, Sanchez-Quinto F, Sjodin P, McKenna J, et al
    Multiple migrations to the Philippines during the last 50,000 years.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed         Abstract available
    
    

    
    Science

22. WILKINSON E, Giovanetti M, Tegally H, San JE, et al
    A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.
    Science. 2021;374:423-431.
    PubMed         Abstract available
    
    

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