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	COVID-19: Daily Top 10 Papers

Genetics

Free Subscription 08.11.2021 2 BMC Cancer 7 Nature 2 PLoS Comput Biol 7 PLoS One 1 Proc Natl Acad Sci U S A

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BMC Cancer

1. HALLAL M, Braga-Lagache S, Jankovic J, Simillion C, et al
   Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA).
   BMC Cancer. 2021;21:789.
   PubMed         Abstract available
   
   
2. SHEN Q, Schelin MEC, Fang F, Joud A, et al
   Diagnostic codes of cancer in Skane healthcare register: a validation study using individual-level data in southern Sweden.
   BMC Cancer. 2021;21:759.
   PubMed         Abstract available
   
   

   
   Nature

3. TSOSIE KS, Fox K, Yracheta JM
   Genomics data: the broken promise is to Indigenous people.
   Nature. 2021;591:529.
   PubMed        
   
   
4. ZIFFRA RS, Kim CN, Ross JM, Wilfert A, et al
   Single-cell epigenomics reveals mechanisms of human cortical development.
   Nature. 2021;598:205-213.
   PubMed         Abstract available
   
   
5. LIU H, Zhou J, Tian W, Luo C, et al
   DNA methylation atlas of the mouse brain at single-cell resolution.
   Nature. 2021;598:120-128.
   PubMed         Abstract available
   
   
6. BAKKEN TE, Jorstad NL, Hu Q, Lake BB, et al
   Comparative cellular analysis of motor cortex in human, marmoset and mouse.
   Nature. 2021;598:111-119.
   PubMed         Abstract available
   
   
7. ZHANG Z, Zhou J, Tan P, Pang Y, et al
   Epigenomic diversity of cortical projection neurons in the mouse brain.
   Nature. 2021;598:167-173.
   PubMed         Abstract available
   
   
8. YAO Z, Liu H, Xie F, Fischer S, et al
   A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.
   Nature. 2021;598:103-110.
   PubMed         Abstract available
   
   
9. 
   A multimodal cell census and atlas of the mammalian primary motor cortex.
   Nature. 2021;598:86-102.
   PubMed         Abstract available
   
   

   
   PLoS Comput Biol

10. THORNTON AM, Fang L, Lo A, McSharry M, et al
    eVIP2: Expression-based variant impact phenotyping to predict the function of gene variants.
    PLoS Comput Biol. 2021;17:e1009132.
    PubMed         Abstract available
    
    
11. CASTELLANO-ESCUDER P, Gonzalez-Dominguez R, Carmona-Pontaque F, Andres-Lacueva C, et al
    POMAShiny: A user-friendly web-based workflow for metabolomics and proteomics data analysis.
    PLoS Comput Biol. 2021;17:e1009148.
    PubMed         Abstract available
    
    

    
    PLoS One

12. ADDO S, Klingel S, Thaller G, Hinrichs D, et al
    Genetic diversity and the application of runs of homozygosity-based methods for inbreeding estimation in German White-headed Mutton sheep.
    PLoS One. 2021;16:e0250608.
    PubMed         Abstract available
    
    
13. CASTRO-PEREIRA D, Peres EA, Pinto-da-Rocha R
    Systematics and phylogeography of the Brazilian Atlantic Forest endemic harvestmen Neosadocus Mello-Leitao, 1926 (Arachnida: Opiliones: Gonyleptidae).
    PLoS One. 2021;16:e0249746.
    PubMed         Abstract available
    
    
14. LIU J, Jiang M, Chen H, Liu Y, et al
    Comparative genome analysis revealed gene inversions, boundary expansions and contractions, and gene loss in the Stemona sessilifolia (Miq.) Miq. chloroplast genome.
    PLoS One. 2021;16:e0247736.
    PubMed         Abstract available
    
    
15. KERZELI IK, Lord M, Doroszko M, Elgendy R, et al
    Single-cell RNAseq and longitudinal proteomic analysis of a novel semi-spontaneous urothelial cancer model reveals tumor cell heterogeneity and pretumoral urine protein alterations.
    PLoS One. 2021;16:e0253178.
    PubMed         Abstract available
    
    
16. PULUKKODY AC, Yung YP, Donnarumma F, Murray KK, et al
    Spatially resolved analysis of Pseudomonas aeruginosa biofilm proteomes measured by laser ablation sample transfer.
    PLoS One. 2021;16:e0250911.
    PubMed         Abstract available
    
    
17. JOSHI S, Thoday-Kennedy E, Daetwyler HD, Hayden M, et al
    High-throughput phenotyping to dissect genotypic differences in safflower for drought tolerance.
    PLoS One. 2021;16:e0254908.
    PubMed         Abstract available
    
    
18. JARSBERG LG, Kedia K, Wendler J, Wright AT, et al
    Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region.
    PLoS One. 2021;16:e0250586.
    PubMed         Abstract available
    
    

    
    Proc Natl Acad Sci U S A

19. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
    Reply to Briggs et al.: Genomic integration and expression of SARS-CoV-2 sequences can explain prolonged or recurrent viral RNA detection.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed        
    
    

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