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COVID-19: Daily Top 10 Papers


  Genetics

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29.11.2021

1 Am J Hum Genet
1 J Clin Oncol
2 Nat Rev Genet
1 Nat Rev Microbiol
6 PLoS Comput Biol
28 PLoS One
1 Proc Natl Acad Sci U S A


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Single Articles


    Am J Hum Genet

  1. SMITH HS, Brothers KB, Knight SJ, Ackerman SL, et al
    Conceptualization of utility in translational clinical genomics research.
    Am J Hum Genet. 2021;108:2027-2036.
    PubMed         Abstract available


    J Clin Oncol

  2. SHERN JF, Selfe J, Izquierdo E, Patidar R, et al
    Genomic Classification and Clinical Outcome in Rhabdomyosarcoma: A Report From an International Consortium.
    J Clin Oncol. 2021;39:2859-2871.
    PubMed         Abstract available


    Nat Rev Genet

  3. BALOGUN OD, Olopade OI
    Addressing health disparities in cancer with genomics.
    Nat Rev Genet. 2021;22:621-622.
    PubMed        

  4. SEPLYARSKIY VB, Sunyaev S
    The origin of human mutation in light of genomic data.
    Nat Rev Genet. 2021;22:672-686.
    PubMed         Abstract available


    Nat Rev Microbiol

  5. KEASLING J, Garcia Martin H, Lee TS, Mukhopadhyay A, et al
    Microbial production of advanced biofuels.
    Nat Rev Microbiol. 2021;19:701-715.
    PubMed         Abstract available


    PLoS Comput Biol

  6. MARIN WM, Dandekar R, Augusto DG, Yusufali T, et al
    High-throughput Interpretation of Killer-cell Immunoglobulin-like Receptor Short-read Sequencing Data with PING.
    PLoS Comput Biol. 2021;17:e1008904.
    PubMed         Abstract available

  7. DOVROLIS N, Kassela K, Konstantinidis K, Kouvela A, et al
    ZWA: Viral genome assembly and characterization hindrances from virus-host chimeric reads; a refining approach.
    PLoS Comput Biol. 2021;17:e1009304.
    PubMed         Abstract available

  8. DE TOMA I, Sierra C, Dierssen M
    Meta-analysis of transcriptomic data reveals clusters of consistently deregulated gene and disease ontologies in Down syndrome.
    PLoS Comput Biol. 2021;17:e1009317.
    PubMed         Abstract available

  9. VIGNOLLE GA, Schaffer D, Zehetner L, Mach RL, et al
    FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution.
    PLoS Comput Biol. 2021;17:e1009372.
    PubMed         Abstract available

  10. TOGNON M, Bonnici V, Garrison E, Giugno R, et al
    GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
    PLoS Comput Biol. 2021;17:e1009444.
    PubMed         Abstract available

  11. KING SB, Singh M
    Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections.
    PLoS Comput Biol. 2021;17:e1009560.
    PubMed         Abstract available


    PLoS One

  12. OSEI-WUSU S, Otchere ID, Morgan P, Musah AB, et al
    Genotypic and phenotypic diversity of Mycobacterium tuberculosis complex genotypes prevalent in West Africa.
    PLoS One. 2021;16:e0255433.
    PubMed         Abstract available

  13. GILLENWATER LA, Helmi S, Stene E, Pratte KA, et al
    Multi-omics subtyping pipeline for chronic obstructive pulmonary disease.
    PLoS One. 2021;16:e0255337.
    PubMed         Abstract available

  14. KIM EN, Yu J, Lim JS, Jeong H, et al
    CRP immunodeposition and proteomic analysis in abdominal aortic aneurysm.
    PLoS One. 2021;16:e0245361.
    PubMed         Abstract available

  15. MOUTSOURI I, Keravnou A, Manoli P, Bertoncini S, et al
    Comparative Y-chromosome analysis among Cypriots in the context of historical events and migrations.
    PLoS One. 2021;16:e0255140.
    PubMed         Abstract available

  16. TOKUTOMI N, Nakai K, Sugano S
    Extreme value theory as a framework for understanding mutation frequency distribution in cancer genomes.
    PLoS One. 2021;16:e0243595.
    PubMed         Abstract available

  17. VAID RK, Thakur Z, Anand T, Kumar S, et al
    Comparative genome analysis of Salmonella enterica serovar Gallinarum biovars Pullorum and Gallinarum decodes strain specific genes.
    PLoS One. 2021;16:e0255612.
    PubMed         Abstract available

  18. GANGOLA S, Joshi S, Kumar S, Sharma B, et al
    Differential proteomic analysis under pesticides stress and normal conditions in Bacillus cereus 2D.
    PLoS One. 2021;16:e0253106.
    PubMed         Abstract available

  19. MCAFEE A, Tarpy DR, Foster LJ
    Queen honey bees exhibit variable resilience to temperature stress.
    PLoS One. 2021;16:e0255381.
    PubMed         Abstract available

  20. XU Y, Kong D, Li Z, Qian L, et al
    Screening and identification of key biomarkers of papillary renal cell carcinoma by bioinformatic analysis.
    PLoS One. 2021;16:e0254868.
    PubMed         Abstract available

  21. ZARUBIN M, Gangapshev A, Gavriljuk Y, Kazalov V, et al
    First transcriptome profiling of D. melanogaster after development in a deep underground low radiation background laboratory.
    PLoS One. 2021;16:e0255066.
    PubMed         Abstract available

  22. CARCAMO DE LA CONCEPCION M, Sargent DJ, Surbanovski N, Colgan RJ, et al
    De novo sequencing and analysis of the transcriptome of two highbush blueberry (Vaccinium corymbosum L.) cultivars 'Bluecrop' and 'Legacy' at harvest and following post-harvest storage.
    PLoS One. 2021;16:e0255139.
    PubMed         Abstract available

  23. HAN H, Mu X, Wang P, Wang Z, et al
    Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses.
    PLoS One. 2021;16:e0254535.
    PubMed         Abstract available

  24. LI Y, Kuhn M, Zukowska-Kasprzyk J, Hennrich ML, et al
    Coupling proteomics and metabolomics for the unsupervised identification of protein-metabolite interactions in Chaetomium thermophilum.
    PLoS One. 2021;16:e0254429.
    PubMed         Abstract available

  25. KU H, Kabwe M, Chan HT, Stanton C, et al
    Novel Drexlerviridae bacteriophage KMI8 with specific lytic activity against Klebsiella michiganensis and its biofilms.
    PLoS One. 2021;16:e0257102.
    PubMed         Abstract available

  26. PONTES-NOGUEIRA M, Martins M, Alencar LRV, Sawaya RJ, et al
    The role of vicariance and dispersal on the temporal range dynamics of forest vipers in the Neotropical region.
    PLoS One. 2021;16:e0257519.
    PubMed         Abstract available

  27. GENATH A, Petruschke H, von Bergen M, Einspanier R, et al
    Influence of formic acid treatment on the proteome of the ectoparasite Varroa destructor.
    PLoS One. 2021;16:e0258845.
    PubMed         Abstract available

  28. FABBRI MC, Dadousis C, Tiezzi F, Maltecca C, et al
    Genetic diversity and population history of eight Italian beef cattle breeds using measures of autozygosity.
    PLoS One. 2021;16:e0248087.
    PubMed         Abstract available

  29. ZHU H, Chu W, Han S, Gao B, et al
    Urinary proteomics investigations into contrast-induced acute kidney injury.
    PLoS One. 2021;16:e0258736.
    PubMed         Abstract available

  30. ELLEPOLA G, Herath J, Manamendra-Arachchi K, Wijayathilaka N, et al
    Molecular species delimitation of shrub frogs of the genus Pseudophilautus (Anura, Rhacophoridae).
    PLoS One. 2021;16:e0258594.
    PubMed         Abstract available

  31. BUSSI Y, Kapon R, Reich Z
    Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy.
    PLoS One. 2021;16:e0258693.
    PubMed         Abstract available

  32. HATSTAT AK, Pupi MD, McCafferty DG
    Predicting PY motif-mediated protein-protein interactions in the Nedd4 family of ubiquitin ligases.
    PLoS One. 2021;16:e0258315.
    PubMed         Abstract available

  33. YANG T, Zhang W, Zhou T, Wu W, et al
    Plant phenomics & precision agriculture simulation of winter wheat growth by the assimilation of unmanned aerial vehicle imagery into the WOFOST model.
    PLoS One. 2021;16:e0246874.
    PubMed         Abstract available

  34. PREISING GA, Faber-Hammond JJ, Renn SCP
    Correspondence of aCGH and long-read genome assembly for detection of copy number differences: A proof-of-concept with cichlid genomes.
    PLoS One. 2021;16:e0258193.
    PubMed         Abstract available

  35. FAVARATO RM, Ribeiro LB, Campos A, Porto JIR, et al
    Comparative cytogenetics of Serrasalmidae (Teleostei: Characiformes): The relationship between chromosomal evolution and molecular phylogenies.
    PLoS One. 2021;16:e0258003.
    PubMed         Abstract available

  36. BERKOWSKI B, Zapalski MK, Jarochowska E, Alderslade P, et al
    Early development and coloniality in Oligophylloides from the Devonian of Morocco-Are Heterocorallia Palaeozoic octocorals?
    PLoS One. 2021;16:e0257523.
    PubMed         Abstract available

  37. CHUAYPEN N, Limothai U, Kunadirek P, Kaewsapsak P, et al
    Identification and validation of circulating miRNAs as potential new biomarkers for severe liver disease in patients with leptospirosis.
    PLoS One. 2021;16:e0257805.
    PubMed         Abstract available

  38. GAO S, Xu G, Zeng Z, Lv J, et al
    Transboundary spread of peste des petits ruminants virus in western China: A prediction model.
    PLoS One. 2021;16:e0257898.
    PubMed         Abstract available

  39. JOHN A, Muenzen K, Ausmees K
    Evaluation of serverless computing for scalable execution of a joint variant calling workflow.
    PLoS One. 2021;16:e0254363.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A

  40. DEVIESE T, Abrams G, Hajdinjak M, Pirson S, et al
    Reply to Van Peer: Direct radiocarbon dating and ancient genomic analysis reveal the true age of the Neanderthals at Spy Cave.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed        


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