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Genetics

Free Subscription Articles published in Genome Res Retrieve available abstracts of 120 articles: HTML format

Single Articles

January 2026
1. KOSCH R, Limm K, Staiger AM, Kurz NS, et al
   Integration of high-throughput proteomic data and complementary omics layers with PriOmics.
   Genome Res. 2026;36:197-213.
   PubMed     Abstract available
   
   
   
2. THOMAS WR, Baldoni C, Zeng Y, Carlson D, et al
   Dynamic metabolic and molecular changes during seasonal shrinking in Sorex araneus.
   Genome Res. 2026;36:61-70.
   PubMed     Abstract available
   
   
   
3. ZHANG W, Cao L, Gu X, Long Y, et al
   Recovering gene regulatory networks in single-cell multi-omics data with PRISM-GRN.
   Genome Res. 2026;36:142-158.
   PubMed     Abstract available
   
   
   December 2025
4. ZHENG H, Sarkar H, Raphael BJ
   Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms.
   Genome Res. 2025;35:2734-2743.
   PubMed     Abstract available
   
   
   
5. DOKMAI N, Zhu K, Sahinalp SC, Cho H, et al
   Secure phasing of private genomes in a trusted execution environment with TX-Phase.
   Genome Res. 2025;35:2626-2636.
   PubMed     Abstract available
   
   
   
6. AHMED O, Boucher C, Langmead B
   Robust 16S rRNA classification based on a compressed LCA index.
   Genome Res. 2025;35:2650-2660.
   PubMed     Abstract available
   
   
   
7. CHANDRA G, Hossen MH, Scholz S, Dilthey AT, et al
   Pangenome-based genome inference using integer programming.
   Genome Res. 2025;35:2661-2670.
   PubMed     Abstract available
   
   
   
8. RAEISI DEHKORDI S, Jia Z, Estabrook J, Hauenstein J, et al
   OMKar automates genome karyotyping using optical maps to identify constitutional abnormalities.
   Genome Res. 2025;35:2671-2681.
   PubMed     Abstract available
   
   
   November 2025
9. PEEL N, Martin S, Heavens D, Yu DW, et al
   Real-time analysis and visualization of nanopore metagenomic samples with MARTi.
   Genome Res. 2025;35:2488-2500.
   PubMed     Abstract available
   
   
   
10. RIBEIRO-DOS-SANTOS AM, Maurano MT
    Iterative improvement of deep learning models using synthetic regulatory genomics.
    Genome Res. 2025;35:2539-2549.
    PubMed     Abstract available
    
    
    
11. MATTEI G, Baragli M, Gega B, Mingrino A, et al
    PoreMeth2 for decoding the evolution of methylome alterations with nanopore sequencing.
    Genome Res. 2025;35:2501-2512.
    PubMed     Abstract available
    
    
    
12. ZHOU J, Huang Y, Ma H, Chen Y, et al
    Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat.
    Genome Res. 2025;35:2461-2471.
    PubMed     Abstract available
    
    
    
13. MARTELOSSI J, Vujovic J, Huang Y, Tatti A, et al
    High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae.
    Genome Res. 2025;35:2601-2616.
    PubMed     Abstract available
    
    
    October 2025
14. SHU H, Chen J, Xu C, Hu J, et al
    Efficient integration of spatial omics data for joint domain detection, matching, and alignment with stMSA.
    Genome Res. 2025;35:2285-2299.
    PubMed     Abstract available
    
    
    September 2025
15. LITTLE JH, Meyer GH, Grover A, Francette AM, et al
    ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies.
    Genome Res. 2025;35:2041-2051.
    PubMed     Abstract available
    
    
    
16. BIAGINI SA, Becelaere S, Aerden M, Jatsenko T, et al
    Genotype imputation from low-coverage data for medical and population genetic analyses.
    Genome Res. 2025;35:1929-1941.
    PubMed     Abstract available
    
    
    
17. WU HL, Kaufman ID, Hsu PY
    The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data.
    Genome Res. 2025;35:2130-2142.
    PubMed     Abstract available
    
    
    August 2025
18. ICHIKAWA K, Shoura MJ, Artiles KL, Jeong DE, et al
    CGC1, a new reference genome for Caenorhabditis elegans.
    Genome Res. 2025;35:1902-1918.
    PubMed     Abstract available
    
    
    
19. KALLEBERG J, Rissman J, Schnabel RD
    Overcoming limitations to customize DeepVariant for domesticated animals with TrioTrain.
    Genome Res. 2025;35:1859-1874.
    PubMed     Abstract available
    
    
    July 2025
20. VARKI R, Rossi M, Ferro E, Oliva M, et al
    Accurate short-read alignment through r-index-based pangenome indexing.
    Genome Res. 2025;35:1609-1620.
    PubMed     Abstract available
    
    
    
21. ZEKRI Y, Gregoricchio S, Yapici E, Huang CF, et al
    Comprehensive functional annotation of ESR1-driven enhancers in breast cancer reveals hierarchical activity independent of genomic and epigenomic contexts.
    Genome Res. 2025;35:1530-1543.
    PubMed     Abstract available
    
    
    
22. YAO J, Yu J, Caffo B, Page SC, et al
    Spatial domain detection using contrastive self-supervised learning for spatial multi-omics technologies.
    Genome Res. 2025;35:1621-1632.
    PubMed     Abstract available
    
    
    
23. MASTORAS M, Asri M, Brambrink L, Hebbar P, et al
    Highly accurate assembly polishing with DeepPolisher.
    Genome Res. 2025;35:1595-1608.
    PubMed     Abstract available
    
    
    
24. ANTIPOV D, Rautiainen M, Nurk S, Walenz BP, et al
    Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding.
    Genome Res. 2025;35:1583-1594.
    PubMed     Abstract available
    
    
    
25. JAYASOORIYA K, Jenner SP, Marasinghe P, Senanayake U, et al
    A new compression strategy to reduce the size of nanopore sequencing data.
    Genome Res. 2025;35:1574-1582.
    PubMed     Abstract available
    
    
    
26. MENDOZA-FERRI MG, Lozachmeur G, Duvina M, Perret L, et al
    Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase.
    Genome Res. 2025;35:1633-1645.
    PubMed     Abstract available
    
    
    June 2025
27. TAM R, Moller M, Luo R, Luo Z, et al
    Long-read genomics reveal extensive nuclear-specific evolution and allele-specific expression in a dikaryotic fungus.
    Genome Res. 2025;35:1364-1376.
    PubMed     Abstract available
    
    
    
28. HAMMOND N, Liao L, Tong PW, Ng Z, et al
    Analytical validation of germline small variant detection using long-read HiFi genome sequencing.
    Genome Res. 2025;35:1391-1399.
    PubMed     Abstract available
    
    
    May 2025
29. FREEDMAN AH, Sackton TB
    Building better genome annotations across the tree of life.
    Genome Res. 2025;35:1261-1276.
    PubMed     Abstract available
    
    
    
30. SMITH BJ, Zhao C, Dubinkina V, Jin X, et al
    Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC.
    Genome Res. 2025;35:1247-1260.
    PubMed     Abstract available
    
    
    
31. LEE DI, Roy S
    Examining the dynamics of three-dimensional genome organization with multitask matrix factorization.
    Genome Res. 2025;35:1179-1193.
    PubMed     Abstract available
    
    
    April 2025
32. MONTANO C, Timp W
    Evolution of genome-wide methylation profiling technologies.
    Genome Res. 2025;35:572-582.
    PubMed     Abstract available
    
    
    
33. RAUSCH T, Marschall T, Korbel JO
    The impact of long-read sequencing on human population-scale genomics.
    Genome Res. 2025;35:593-598.
    PubMed     Abstract available
    
    
    
34. MAHMOUD M, Agustinho DP, Sedlazeck FJ
    A Hitchhiker's Guide to long-read genomic analysis.
    Genome Res. 2025;35:545-558.
    PubMed     Abstract available
    
    
    
35. JENSEN TD, Ni B, Reuter CM, Gorzynski JE, et al
    Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease.
    Genome Res. 2025;35:914-928.
    PubMed     Abstract available
    
    
    
36. LI Q, Keskus AG, Wagner J, Izydorczyk MB, et al
    Unraveling the hidden complexity of cancer through long-read sequencing.
    Genome Res. 2025;35:599-620.
    PubMed     Abstract available
    
    
    
37. MONZO C, Frankish A, Conesa A
    Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation.
    Genome Res. 2025;35:583-592.
    PubMed     Abstract available
    
    
    
38. VRCEK L, Bresson X, Laurent T, Schmitz M, et al
    Geometric deep learning framework for de novo genome assembly.
    Genome Res. 2025;35:839-849.
    PubMed     Abstract available
    
    
    March 2025
39. MA J, Bechsgaard J, Aagaard A, Villesen P, et al
    The genomic consequences and persistence of sociality in spiders.
    Genome Res. 2025;35:499-511.
    PubMed     Abstract available
    
    
    
40. LI Y, Zhang J
    Transcriptomic and proteomic effects of gene deletion are not evolutionarily conserved.
    Genome Res. 2025;35:512-521.
    PubMed     Abstract available
    
    
    February 2025
41. JENIKE KM, Campos-Dominguez L, Bodde M, Cerca J, et al
    k-mer approaches for biodiversity genomics.
    Genome Res. 2025;35:219-230.
    PubMed     Abstract available
    
    
    
42. MIAO Z, Yue JX
    Interactive visualization and interpretation of pangenome graphs by linear reference-based coordinate projection and annotation integration.
    Genome Res. 2025;35:296-310.
    PubMed     Abstract available
    
    
    
43. ZHI D, Jiang X, Harmanci A
    Proxy panels enable privacy-aware outsourcing of genotype imputation.
    Genome Res. 2025;35:326-339.
    PubMed     Abstract available
    
    
    
44. LIU Y, Botelho J, Iranzo J
    Timescale and genetic linkage explain the variable impact of defense systems on horizontal gene transfer.
    Genome Res. 2025;35:268-278.
    PubMed     Abstract available
    
    
    
45. MOURATIDIS I, Konnaris MA, Chantzi N, Chan CSY, et al
    Identification of the shortest species-specific oligonucleotide sequences.
    Genome Res. 2025;35:279-295.
    PubMed     Abstract available
    
    
    
46. YAN M, Andersen TO, Pope PB, Yu Z, et al
    Probing the eukaryotic microbes of ruminants with a deep-learning classifier and comprehensive protein databases.
    Genome Res. 2025;35:368-378.
    PubMed     Abstract available
    
    
    January 2025
47. LEWIN TD, Liao IJ, Chen ME, Bishop JDD, et al
    Fusion, fission, and scrambling of the bilaterian genome in Bryozoa.
    Genome Res. 2025;35:78-92.
    PubMed     Abstract available
    
    
    
48. WOMERSLEY HJ, Muliaditan D, DasGupta R, Cheow LF, et al
    Single-nucleus CUT&RUN elucidates the function of intrinsic and genomics-driven epigenetic heterogeneity in head and neck cancer progression.
    Genome Res. 2025;35:162-177.
    PubMed     Abstract available
    
    
    December 2024
49. OROZCO-ARIAS S, Sierra P, Durbin R, Gonzalez J, et al
    MCHelper automatically curates transposable element libraries across eukaryotic species.
    Genome Res. 2024;34:2256-2268.
    PubMed     Abstract available
    
    
    
50. BURGER KE, Klepper S, von Luxburg U, Baumdicker F, et al
    Inferring ancestry with the hierarchical soft clustering approach tangleGen.
    Genome Res. 2024;34:2244-2255.
    PubMed     Abstract available
    
    
    November 2024
51. IYER SV, Goodwin S, McCombie WR
    Leveraging the power of long reads for targeted sequencing.
    Genome Res. 2024;34:1701-1718.
    PubMed     Abstract available
    
    
    
52. BYERLY PA, von Thaden A, Leushkin E, Hilgers L, et al
    Haplotype-resolved genome and population genomics of the threatened garden dormouse in Europe.
    Genome Res. 2024;34:2094-2107.
    PubMed     Abstract available
    
    
    
53. LI K, Smith ML, Blazier JC, Kochan KJ, et al
    Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding.
    Genome Res. 2024;34:2081-2093.
    PubMed     Abstract available
    
    
    
54. SLIZOVSKIY IB, Bonin N, Bravo JE, Ferm PM, et al
    Factors impacting target-enriched long-read sequencing of resistomes and mobilomes.
    Genome Res. 2024;34:2048-2060.
    PubMed     Abstract available
    
    
    
55. GOMEZ-SIMMONDS A, Annavajhala MK, Seeram D, Hokunson TW, et al
    Genomic epidemiology of carbapenem-resistant Enterobacterales at a New York City hospital over a 10-year period reveals complex plasmid-clone dynamics and evidence for frequent horizontal transfer of bla (KPC).
    Genome Res. 2024;34:1895-1907.
    PubMed     Abstract available
    
    
    
56. GUSTAFSON JA, Gibson SB, Damaraju N, Zalusky MPG, et al
    High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation.
    Genome Res. 2024;34:2061-2073.
    PubMed     Abstract available
    
    
    
57. JHA A, Bohaczuk SC, Mao Y, Ranchalis J, et al
    DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools.
    Genome Res. 2024;34:1976-1986.
    PubMed     Abstract available
    
    
    October 2024
58. DERELLE R, von Wachsmann J, Maklin T, Hellewell J, et al
    Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis.
    Genome Res. 2024;34:1661-1673.
    PubMed     Abstract available
    
    
    
59. VALENTIN-ALVARADO LE, Shi LD, Appler KE, Crits-Christoph A, et al
    Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements.
    Genome Res. 2024;34:1595-1609.
    PubMed     Abstract available
    
    
    
60. SCHROD S, Luck N, Lohmayer R, Solbrig S, et al
    Spatial Cellular Networks from omics data with SpaCeNet.
    Genome Res. 2024;34:1371-1383.
    PubMed     Abstract available
    
    
    
61. SAPCI AOB, Mirarab S
    Memory-bound k-mer selection for large and evolutionarily diverse reference libraries.
    Genome Res. 2024;34:1455-1467.
    PubMed     Abstract available
    
    
    
62. HONG MM, Froelicher D, Magner R, Popic V, et al
    Secure discovery of genetic relatives across large-scale and distributed genomic data sets.
    Genome Res. 2024;34:1312-1323.
    PubMed     Abstract available
    
    
    
63. AZIZPOUR A, Balaji A, Treangen TJ, Segarra S, et al
    Graph-based self-supervised learning for repeat detection in metagenomic assembly.
    Genome Res. 2024;34:1468-1476.
    PubMed     Abstract available
    
    
    
64. CHANDRA G, Gibney D, Jain C
    Haplotype-aware sequence alignment to pangenome graphs.
    Genome Res. 2024;34:1265-1275.
    PubMed     Abstract available
    
    
    September 2024
65. TIBBS-CORTES LE, Guo T, Andorf CM, Li X, et al
    Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize.
    Genome Res. 2024;34:1253-1263.
    PubMed     Abstract available
    
    
    
66. CHEN S, Wang J, Jung I, Qiu Z, et al
    A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data.
    Genome Res. 2024;34:1174-1184.
    PubMed     Abstract available
    
    
    August 2024
67. KURONEN J, Horsfield ST, Pontinen AK, Mallawaarachchi S, et al
    Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs.
    Genome Res. 2024;34:1081-1088.
    PubMed     Abstract available
    
    
    
68. XIANG G, He X, Giardine BM, Isaac KJ, et al
    Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.
    Genome Res. 2024;34:1089-1105.
    PubMed     Abstract available
    
    
    July 2024
69. LEE S, Portlock T, Le Chatelier E, Garcia-Guevara F, et al
    Global compositional and functional states of the human gut microbiome in health and disease.
    Genome Res. 2024;34:967-978.
    PubMed     Abstract available
    
    
    
70. HIRTH A, Fatti E, Netz E, Acebron SP, et al
    DEAD box RNA helicases are pervasive protein kinase interactors and activators.
    Genome Res. 2024;34:952-966.
    PubMed     Abstract available
    
    
    
71. MORRISSEY A, Shi J, James DQ, Mahony S, et al
    Accurate allocation of multimapped reads enables regulatory element analysis at repeats.
    Genome Res. 2024;34:937-951.
    PubMed     Abstract available
    
    
    
72. BELLINZONA G, Nardi T, Castelli M, Batisti Biffignandi G, et al
    Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States.
    Genome Res. 2024;34:877-887.
    PubMed     Abstract available
    
    
    
73. BUCKLEY RM, Ostrander EA
    Large-scale genomic analysis of the domestic dog informs biological discovery.
    Genome Res. 2024;34:811-821.
    PubMed     Abstract available
    
    
    
74. ULRICH JU, Renard BY
    Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.
    Genome Res. 2024;34:914-924.
    PubMed     Abstract available
    
    
    June 2024
75. GABRIEL L, Bruna T, Hoff KJ, Ebel M, et al
    BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
    Genome Res. 2024;34:769-777.
    PubMed     Abstract available
    
    
    
76. BRUNA T, Lomsadze A, Borodovsky M
    GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.
    Genome Res. 2024;34:757-768.
    PubMed     Abstract available
    
    
    
77. WON S, Yu J, Kim H
    Identifying genes within pathways in unannotated genomes with PaGeSearch.
    Genome Res. 2024;34:784-795.
    PubMed     Abstract available
    
    
    
78. MURPHY WJ, Harris AJ
    Toward telomere-to-telomere cat genomes for precision medicine and conservation biology.
    Genome Res. 2024;34:655-664.
    PubMed     Abstract available
    
    
    
79. KOENIG Z, Yohannes MT, Nkambule LL, Zhao X, et al
    A harmonized public resource of deeply sequenced diverse human genomes.
    Genome Res. 2024;34:796-809.
    PubMed     Abstract available
    
    
    
80. GAMAARACHCHI H, Ferguson JM, Samarakoon H, Liyanage K, et al
    Simulation of nanopore sequencing signal data with tunable parameters.
    Genome Res. 2024;34:778-783.
    PubMed     Abstract available
    
    
    May 2024
81. CAI Q, Fu Y, Lyu C, Wang Z, et al
    A new framework for exploratory network mediator analysis in omics data.
    Genome Res. 2024;34:642-654.
    PubMed     Abstract available
    
    
    
82. JI S, Zhu T, Sethia A, Wang W, et al
    Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples.
    Genome Res. 2024;34:633-641.
    PubMed     Abstract available
    
    
    April 2024
83. LORIG-ROACH R, Meredith M, Monlong J, Jain M, et al
    Phased nanopore assembly with Shasta and modular graph phasing with GFAse.
    Genome Res. 2024;34:454-468.
    PubMed     Abstract available
    
    
    
84. FOROOZANDEH SHAHRAKI M, Farahbod M, Libbrecht MW
    Robust chromatin state annotation.
    Genome Res. 2024;34:469-483.
    PubMed     Abstract available
    
    
    March 2024
85. YU W, Luo H, Yang J, Zhang S, et al
    Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes.
    Genome Res. 2024;34:326-340.
    PubMed     Abstract available
    
    
    
86. CHE H, Jiang P, Choy LYL, Cheng SH, et al
    Genomic origin, fragmentomics, and transcriptional properties of long cell-free DNA molecules in human plasma.
    Genome Res. 2024;34:189-200.
    PubMed     Abstract available
    
    
    February 2024
87. LEBARON VON BAEYER S, Crocker R, Rakotoarivony R, Ranaivoarisoa JF, et al
    Why community consultation matters in genomic research benefit-sharing models.
    Genome Res. 2024;34:1-6.
    PubMed    
    
    
    December 2023
88. HARVEY WT, Ebert P, Ebler J, Audano PA, et al
    Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall.
    Genome Res. 2023;33:2029-2040.
    PubMed     Abstract available
    
    
    
89. EMANI PS, Geradi MN, Gursoy G, Grasty MR, et al
    Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases.
    Genome Res. 2023;33:2156-2173.
    PubMed     Abstract available
    
    
    
90. METZGER DCH, Porter I, Mobley B, Sandkam BA, et al
    Transposon wave remodeled the epigenomic landscape in the rapid evolution of X-Chromosome dosage compensation.
    Genome Res. 2023;33:1917-1931.
    PubMed     Abstract available
    
    
    October 2023
91. CHRISMAN B, He C, Jung JY, Stockham N, et al
    Localizing unmapped sequences with families to validate the Telomere-to-Telomere assembly and identify new hotspots for genetic diversity.
    Genome Res. 2023;33:1734-1746.
    PubMed     Abstract available
    
    
    
92. BARIL T, Pym A, Bass C, Hayward A, et al
    Transposon accumulation at xenobiotic gene family loci in aphids.
    Genome Res. 2023;33:1718-1733.
    PubMed     Abstract available
    
    
    
93. SPROUL JS, Hotaling S, Heckenhauer J, Powell A, et al
    Analyses of 600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges.
    Genome Res. 2023;33:1708-1717.
    PubMed     Abstract available
    
    
    September 2023
94. LI Z, Meisner J, Albrechtsen A
    Fast and accurate out-of-core PCA framework for large scale biobank data.
    Genome Res. 2023;33:1599-1608.
    PubMed     Abstract available
    
    
    
95. PAREY E, Fernandez-Aroca D, Frost S, Uribarren A, et al
    Phylogenetic modeling of enhancer shifts in African mole-rats reveals regulatory changes associated with tissue-specific traits.
    Genome Res. 2023;33:1513-1526.
    PubMed     Abstract available
    
    
    August 2023
96. DE TRIBOLET-HARDY J, Thorball CW, Forey R, Planet E, et al
    Genetic features and genomic targets of human KRAB-zinc finger proteins.
    Genome Res. 2023;33:1409-1423.
    PubMed     Abstract available
    
    
    
97. DAI X, Bian P, Hu D, Luo F, et al
    A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species.
    Genome Res. 2023;33:1284-1298.
    PubMed     Abstract available
    
    
    
98. MARMOL-SANCHEZ E, Fromm B, Oskolkov N, Pochon Z, et al
    Historical RNA expression profiles from the extinct Tasmanian tiger.
    Genome Res. 2023;33:1299-1316.
    PubMed     Abstract available
    
    
    July 2023
99. SCHWEIGER R, Durbin R
    Ultrafast genome-wide inference of pairwise coalescence times.
    Genome Res. 2023;33:1023-1031.
    PubMed     Abstract available
    
    
    
100. BAKER DN, Langmead B
     Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2.
     Genome Res. 2023;33:1218-1227.
     PubMed     Abstract available
     
     
     
101. RAHMAN HERA M, Pierce-Ward NT, Koslicki D
     Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash.
     Genome Res. 2023;33:1061-1068.
     PubMed     Abstract available
     
     
     
102. CRACCO A, Tomescu AI
     Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT.
     Genome Res. 2023;33:1198-1207.
     PubMed     Abstract available
     
     
     
103. VENKATESARAMANI R, Wan Z, Malin BA, Vorobeychik Y, et al
     Enabling tradeoffs in privacy and utility in genomic data Beacons and summary statistics.
     Genome Res. 2023;33:1113-1123.
     PubMed     Abstract available
     
     
     June 2023
104. GRANDCHAMP A, Kuhl L, Lebherz M, Bruggemann K, et al
     Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster.
     Genome Res. 2023;33:872-890.
     PubMed     Abstract available
     
     
     
105. JOURDAIN J, Barasc H, Faraut T, Calgaro A, et al
     Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets.
     Genome Res. 2023;33:957-971.
     PubMed     Abstract available
     
     
     
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