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Genetics

Free Subscription Articles published in Genome Res Retrieve available abstracts of 141 articles: HTML format

Single Articles

August 2026
1. DU Z, Zhang X, Zhang Q, Li J, et al
   Multisource omic alignment and biological feature discovery with Performer encoder and triplet networks.
   Genome Res. 2026;36:1668-1682.
   PubMed     Abstract available
   
   
   
2. LIDDIARD K, Coral E, Bhatt H, Cleal K, et al
   Telomere-driven replicative crisis is driven by large-scale changes in genomic architecture.
   Genome Res. 2026;36:1529-1547.
   PubMed     Abstract available
   
   
   June 2026
3. VARKI R, Boucher C
   Building genomic data structures from compressed representations using prefix-free parsing.
   Genome Res. 2026;36:1081-1093.
   PubMed     Abstract available
   
   
   
4. SHAO J, Chen S, Wang Z, Chen Z, et al
   Balancing Gene Ontology annotation specificity in protein function prediction based on the protein sequence large graph.
   Genome Res. 2026;36:1273-1286.
   PubMed     Abstract available
   
   
   
5. QI J, Yang Z, Yu T, Li G, et al
   Enabling efficient and robust analysis of tandem repeats in genomic data using Wavefront-based String Decomposer.
   Genome Res. 2026;36:1265-1272.
   PubMed     Abstract available
   
   
   
6. LI J, Liu A, Liu R, Xu Z, et al
   Tissue-specific mRNA m(6)A reprogramming unveils vitamin-driven post-transcriptional regulation in mice.
   Genome Res. 2026;36:1141-1157.
   PubMed     Abstract available
   
   
   May 2026
7. CHEN K, Li X, Shi Q, Shao M, et al
   Hash functions in nucleotide sequence analysis.
   Genome Res. 2026;36:887-902.
   PubMed     Abstract available
   
   
   April 2026
8. VADDADI K, Lin MJ, Majidian S, Mun T, et al
   Minimizing reference bias with an imputed personalized reference.
   Genome Res. 2026;36:740-753.
   PubMed     Abstract available
   
   
   
9. WEI L, Jiang Z, Fan B, Yan Y, et al
   Automated interpretable artificial intelligence genomic prediction with AIGP.
   Genome Res. 2026;36:814-826.
   PubMed     Abstract available
   
   
   
10. RILEY DM, Elsayed R, Walsh MD, Johal S, et al
    Functional genomics analysis of developing zebrafish and human endoderm reveals highly conserved cis-regulatory modules acting during vertebrate organogenesis.
    Genome Res. 2026;36:695-712.
    PubMed     Abstract available
    
    
    
11. LIU T, Huang T, Jin W, Chu T, et al
    spRefine denoises and imputes spatial transcriptomic data with a reference-free framework powered by genomic language model.
    Genome Res. 2026;36:754-768.
    PubMed     Abstract available
    
    
    
12. NISCHWITZ E, Schoonenberg VAC, Mullner R, Fradera-Sola A, et al
    A systems view on DNA damage response kinetics in Tetrahymena.
    Genome Res. 2026;36:865-874.
    PubMed     Abstract available
    
    
    March 2026
13. XIE D, Ye P, Ma Y, Zhao Z, et al
    Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility.
    Genome Res. 2026;36:506-521.
    PubMed     Abstract available
    
    
    
14. ARRES J, Elavalli S, Behl S, Matias Sanchez D, et al
    Assessing the readiness of Oxford Nanopore sequencing for clinical genomics applications.
    Genome Res. 2026;36:460-471.
    PubMed     Abstract available
    
    
    
15. SHEMIRANI R, Belbin GM, Cullina S, Caggiano C, et al
    A spectral component approach leveraging identity-by-descent graphs to address recent population structure in genomic analysis.
    Genome Res. 2026;36:534-546.
    PubMed     Abstract available
    
    
    February 2026
16. HUANG Z, Zheng R, Jia P, Yan X, et al
    scSHEFT enables multiomics label transfer from scRNA-seq to scATAC-seq through dual alignment.
    Genome Res. 2026;36:387-396.
    PubMed     Abstract available
    
    
    
17. GELETA M, Montserrat DM, Giro-I-Nieto X, Ioannidis AG, et al
    Autoencoders for genomic variation analysis.
    Genome Res. 2026;36:348-360.
    PubMed     Abstract available
    
    
    
18. PEEDE D, Banuelos MM, Medina Tretmanis J, Miyagi M, et al
    Recent advances in methods to characterize archaic introgression in modern humans.
    Genome Res. 2026;36:239-256.
    PubMed     Abstract available
    
    
    
19. ZHANG W, Liu Y, Li G, Xu J, et al
    Strain-level metagenomic profiling using pangenome graphs with PanTax.
    Genome Res. 2026;36:405-420.
    PubMed     Abstract available
    
    
    
20. YE C, Li X, Cheng N, Su Y, et al
    The SynMall resource for characterizing the functional impact of synonymous variation.
    Genome Res. 2026;36:421-431.
    PubMed     Abstract available
    
    
    
21. SHIVAKUMAR VS, Langmead B
    Partitioned multi-MUM finding for scalable pangenomics with MumemtoM.
    Genome Res. 2026;36:397-404.
    PubMed     Abstract available
    
    
    January 2026
22. KOSCH R, Limm K, Staiger AM, Kurz NS, et al
    Integration of high-throughput proteomic data and complementary omics layers with PriOmics.
    Genome Res. 2026;36:197-213.
    PubMed     Abstract available
    
    
    
23. THOMAS WR, Baldoni C, Zeng Y, Carlson D, et al
    Dynamic metabolic and molecular changes during seasonal shrinking in Sorex araneus.
    Genome Res. 2026;36:61-70.
    PubMed     Abstract available
    
    
    
24. ZHANG W, Cao L, Gu X, Long Y, et al
    Recovering gene regulatory networks in single-cell multi-omics data with PRISM-GRN.
    Genome Res. 2026;36:142-158.
    PubMed     Abstract available
    
    
    December 2025
25. ZHENG H, Sarkar H, Raphael BJ
    Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms.
    Genome Res. 2025;35:2734-2743.
    PubMed     Abstract available
    
    
    
26. DOKMAI N, Zhu K, Sahinalp SC, Cho H, et al
    Secure phasing of private genomes in a trusted execution environment with TX-Phase.
    Genome Res. 2025;35:2626-2636.
    PubMed     Abstract available
    
    
    
27. AHMED O, Boucher C, Langmead B
    Robust 16S rRNA classification based on a compressed LCA index.
    Genome Res. 2025;35:2650-2660.
    PubMed     Abstract available
    
    
    
28. CHANDRA G, Hossen MH, Scholz S, Dilthey AT, et al
    Pangenome-based genome inference using integer programming.
    Genome Res. 2025;35:2661-2670.
    PubMed     Abstract available
    
    
    
29. RAEISI DEHKORDI S, Jia Z, Estabrook J, Hauenstein J, et al
    OMKar automates genome karyotyping using optical maps to identify constitutional abnormalities.
    Genome Res. 2025;35:2671-2681.
    PubMed     Abstract available
    
    
    November 2025
30. PEEL N, Martin S, Heavens D, Yu DW, et al
    Real-time analysis and visualization of nanopore metagenomic samples with MARTi.
    Genome Res. 2025;35:2488-2500.
    PubMed     Abstract available
    
    
    
31. RIBEIRO-DOS-SANTOS AM, Maurano MT
    Iterative improvement of deep learning models using synthetic regulatory genomics.
    Genome Res. 2025;35:2539-2549.
    PubMed     Abstract available
    
    
    
32. MATTEI G, Baragli M, Gega B, Mingrino A, et al
    PoreMeth2 for decoding the evolution of methylome alterations with nanopore sequencing.
    Genome Res. 2025;35:2501-2512.
    PubMed     Abstract available
    
    
    
33. ZHOU J, Huang Y, Ma H, Chen Y, et al
    Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat.
    Genome Res. 2025;35:2461-2471.
    PubMed     Abstract available
    
    
    
34. MARTELOSSI J, Vujovic J, Huang Y, Tatti A, et al
    High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae.
    Genome Res. 2025;35:2601-2616.
    PubMed     Abstract available
    
    
    October 2025
35. SHU H, Chen J, Xu C, Hu J, et al
    Efficient integration of spatial omics data for joint domain detection, matching, and alignment with stMSA.
    Genome Res. 2025;35:2285-2299.
    PubMed     Abstract available
    
    
    September 2025
36. LITTLE JH, Meyer GH, Grover A, Francette AM, et al
    ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies.
    Genome Res. 2025;35:2041-2051.
    PubMed     Abstract available
    
    
    
37. BIAGINI SA, Becelaere S, Aerden M, Jatsenko T, et al
    Genotype imputation from low-coverage data for medical and population genetic analyses.
    Genome Res. 2025;35:1929-1941.
    PubMed     Abstract available
    
    
    
38. WU HL, Kaufman ID, Hsu PY
    The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data.
    Genome Res. 2025;35:2130-2142.
    PubMed     Abstract available
    
    
    August 2025
39. ICHIKAWA K, Shoura MJ, Artiles KL, Jeong DE, et al
    CGC1, a new reference genome for Caenorhabditis elegans.
    Genome Res. 2025;35:1902-1918.
    PubMed     Abstract available
    
    
    
40. KALLEBERG J, Rissman J, Schnabel RD
    Overcoming limitations to customize DeepVariant for domesticated animals with TrioTrain.
    Genome Res. 2025;35:1859-1874.
    PubMed     Abstract available
    
    
    July 2025
41. VARKI R, Rossi M, Ferro E, Oliva M, et al
    Accurate short-read alignment through r-index-based pangenome indexing.
    Genome Res. 2025;35:1609-1620.
    PubMed     Abstract available
    
    
    
42. ZEKRI Y, Gregoricchio S, Yapici E, Huang CF, et al
    Comprehensive functional annotation of ESR1-driven enhancers in breast cancer reveals hierarchical activity independent of genomic and epigenomic contexts.
    Genome Res. 2025;35:1530-1543.
    PubMed     Abstract available
    
    
    
43. YAO J, Yu J, Caffo B, Page SC, et al
    Spatial domain detection using contrastive self-supervised learning for spatial multi-omics technologies.
    Genome Res. 2025;35:1621-1632.
    PubMed     Abstract available
    
    
    
44. MASTORAS M, Asri M, Brambrink L, Hebbar P, et al
    Highly accurate assembly polishing with DeepPolisher.
    Genome Res. 2025;35:1595-1608.
    PubMed     Abstract available
    
    
    
45. ANTIPOV D, Rautiainen M, Nurk S, Walenz BP, et al
    Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding.
    Genome Res. 2025;35:1583-1594.
    PubMed     Abstract available
    
    
    
46. JAYASOORIYA K, Jenner SP, Marasinghe P, Senanayake U, et al
    A new compression strategy to reduce the size of nanopore sequencing data.
    Genome Res. 2025;35:1574-1582.
    PubMed     Abstract available
    
    
    
47. MENDOZA-FERRI MG, Lozachmeur G, Duvina M, Perret L, et al
    Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase.
    Genome Res. 2025;35:1633-1645.
    PubMed     Abstract available
    
    
    June 2025
48. TAM R, Moller M, Luo R, Luo Z, et al
    Long-read genomics reveal extensive nuclear-specific evolution and allele-specific expression in a dikaryotic fungus.
    Genome Res. 2025;35:1364-1376.
    PubMed     Abstract available
    
    
    
49. HAMMOND N, Liao L, Tong PW, Ng Z, et al
    Analytical validation of germline small variant detection using long-read HiFi genome sequencing.
    Genome Res. 2025;35:1391-1399.
    PubMed     Abstract available
    
    
    May 2025
50. FREEDMAN AH, Sackton TB
    Building better genome annotations across the tree of life.
    Genome Res. 2025;35:1261-1276.
    PubMed     Abstract available
    
    
    
51. SMITH BJ, Zhao C, Dubinkina V, Jin X, et al
    Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC.
    Genome Res. 2025;35:1247-1260.
    PubMed     Abstract available
    
    
    
52. LEE DI, Roy S
    Examining the dynamics of three-dimensional genome organization with multitask matrix factorization.
    Genome Res. 2025;35:1179-1193.
    PubMed     Abstract available
    
    
    April 2025
53. MONTANO C, Timp W
    Evolution of genome-wide methylation profiling technologies.
    Genome Res. 2025;35:572-582.
    PubMed     Abstract available
    
    
    
54. RAUSCH T, Marschall T, Korbel JO
    The impact of long-read sequencing on human population-scale genomics.
    Genome Res. 2025;35:593-598.
    PubMed     Abstract available
    
    
    
55. MAHMOUD M, Agustinho DP, Sedlazeck FJ
    A Hitchhiker's Guide to long-read genomic analysis.
    Genome Res. 2025;35:545-558.
    PubMed     Abstract available
    
    
    
56. JENSEN TD, Ni B, Reuter CM, Gorzynski JE, et al
    Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease.
    Genome Res. 2025;35:914-928.
    PubMed     Abstract available
    
    
    
57. LI Q, Keskus AG, Wagner J, Izydorczyk MB, et al
    Unraveling the hidden complexity of cancer through long-read sequencing.
    Genome Res. 2025;35:599-620.
    PubMed     Abstract available
    
    
    
58. MONZO C, Frankish A, Conesa A
    Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation.
    Genome Res. 2025;35:583-592.
    PubMed     Abstract available
    
    
    
59. VRCEK L, Bresson X, Laurent T, Schmitz M, et al
    Geometric deep learning framework for de novo genome assembly.
    Genome Res. 2025;35:839-849.
    PubMed     Abstract available
    
    
    March 2025
60. MA J, Bechsgaard J, Aagaard A, Villesen P, et al
    The genomic consequences and persistence of sociality in spiders.
    Genome Res. 2025;35:499-511.
    PubMed     Abstract available
    
    
    
61. LI Y, Zhang J
    Transcriptomic and proteomic effects of gene deletion are not evolutionarily conserved.
    Genome Res. 2025;35:512-521.
    PubMed     Abstract available
    
    
    February 2025
62. JENIKE KM, Campos-Dominguez L, Bodde M, Cerca J, et al
    k-mer approaches for biodiversity genomics.
    Genome Res. 2025;35:219-230.
    PubMed     Abstract available
    
    
    
63. MIAO Z, Yue JX
    Interactive visualization and interpretation of pangenome graphs by linear reference-based coordinate projection and annotation integration.
    Genome Res. 2025;35:296-310.
    PubMed     Abstract available
    
    
    
64. ZHI D, Jiang X, Harmanci A
    Proxy panels enable privacy-aware outsourcing of genotype imputation.
    Genome Res. 2025;35:326-339.
    PubMed     Abstract available
    
    
    
65. LIU Y, Botelho J, Iranzo J
    Timescale and genetic linkage explain the variable impact of defense systems on horizontal gene transfer.
    Genome Res. 2025;35:268-278.
    PubMed     Abstract available
    
    
    
66. MOURATIDIS I, Konnaris MA, Chantzi N, Chan CSY, et al
    Identification of the shortest species-specific oligonucleotide sequences.
    Genome Res. 2025;35:279-295.
    PubMed     Abstract available
    
    
    
67. YAN M, Andersen TO, Pope PB, Yu Z, et al
    Probing the eukaryotic microbes of ruminants with a deep-learning classifier and comprehensive protein databases.
    Genome Res. 2025;35:368-378.
    PubMed     Abstract available
    
    
    January 2025
68. LEWIN TD, Liao IJ, Chen ME, Bishop JDD, et al
    Fusion, fission, and scrambling of the bilaterian genome in Bryozoa.
    Genome Res. 2025;35:78-92.
    PubMed     Abstract available
    
    
    
69. WOMERSLEY HJ, Muliaditan D, DasGupta R, Cheow LF, et al
    Single-nucleus CUT&RUN elucidates the function of intrinsic and genomics-driven epigenetic heterogeneity in head and neck cancer progression.
    Genome Res. 2025;35:162-177.
    PubMed     Abstract available
    
    
    December 2024
70. OROZCO-ARIAS S, Sierra P, Durbin R, Gonzalez J, et al
    MCHelper automatically curates transposable element libraries across eukaryotic species.
    Genome Res. 2024;34:2256-2268.
    PubMed     Abstract available
    
    
    
71. BURGER KE, Klepper S, von Luxburg U, Baumdicker F, et al
    Inferring ancestry with the hierarchical soft clustering approach tangleGen.
    Genome Res. 2024;34:2244-2255.
    PubMed     Abstract available
    
    
    November 2024
72. IYER SV, Goodwin S, McCombie WR
    Leveraging the power of long reads for targeted sequencing.
    Genome Res. 2024;34:1701-1718.
    PubMed     Abstract available
    
    
    
73. BYERLY PA, von Thaden A, Leushkin E, Hilgers L, et al
    Haplotype-resolved genome and population genomics of the threatened garden dormouse in Europe.
    Genome Res. 2024;34:2094-2107.
    PubMed     Abstract available
    
    
    
74. LI K, Smith ML, Blazier JC, Kochan KJ, et al
    Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding.
    Genome Res. 2024;34:2081-2093.
    PubMed     Abstract available
    
    
    
75. SLIZOVSKIY IB, Bonin N, Bravo JE, Ferm PM, et al
    Factors impacting target-enriched long-read sequencing of resistomes and mobilomes.
    Genome Res. 2024;34:2048-2060.
    PubMed     Abstract available
    
    
    
76. GOMEZ-SIMMONDS A, Annavajhala MK, Seeram D, Hokunson TW, et al
    Genomic epidemiology of carbapenem-resistant Enterobacterales at a New York City hospital over a 10-year period reveals complex plasmid-clone dynamics and evidence for frequent horizontal transfer of bla (KPC).
    Genome Res. 2024;34:1895-1907.
    PubMed     Abstract available
    
    
    
77. GUSTAFSON JA, Gibson SB, Damaraju N, Zalusky MPG, et al
    High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation.
    Genome Res. 2024;34:2061-2073.
    PubMed     Abstract available
    
    
    
78. JHA A, Bohaczuk SC, Mao Y, Ranchalis J, et al
    DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools.
    Genome Res. 2024;34:1976-1986.
    PubMed     Abstract available
    
    
    October 2024
79. DERELLE R, von Wachsmann J, Maklin T, Hellewell J, et al
    Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis.
    Genome Res. 2024;34:1661-1673.
    PubMed     Abstract available
    
    
    
80. VALENTIN-ALVARADO LE, Shi LD, Appler KE, Crits-Christoph A, et al
    Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements.
    Genome Res. 2024;34:1595-1609.
    PubMed     Abstract available
    
    
    
81. SCHROD S, Luck N, Lohmayer R, Solbrig S, et al
    Spatial Cellular Networks from omics data with SpaCeNet.
    Genome Res. 2024;34:1371-1383.
    PubMed     Abstract available
    
    
    
82. SAPCI AOB, Mirarab S
    Memory-bound k-mer selection for large and evolutionarily diverse reference libraries.
    Genome Res. 2024;34:1455-1467.
    PubMed     Abstract available
    
    
    
83. HONG MM, Froelicher D, Magner R, Popic V, et al
    Secure discovery of genetic relatives across large-scale and distributed genomic data sets.
    Genome Res. 2024;34:1312-1323.
    PubMed     Abstract available
    
    
    
84. AZIZPOUR A, Balaji A, Treangen TJ, Segarra S, et al
    Graph-based self-supervised learning for repeat detection in metagenomic assembly.
    Genome Res. 2024;34:1468-1476.
    PubMed     Abstract available
    
    
    
85. CHANDRA G, Gibney D, Jain C
    Haplotype-aware sequence alignment to pangenome graphs.
    Genome Res. 2024;34:1265-1275.
    PubMed     Abstract available
    
    
    September 2024
86. TIBBS-CORTES LE, Guo T, Andorf CM, Li X, et al
    Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize.
    Genome Res. 2024;34:1253-1263.
    PubMed     Abstract available
    
    
    
87. CHEN S, Wang J, Jung I, Qiu Z, et al
    A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data.
    Genome Res. 2024;34:1174-1184.
    PubMed     Abstract available
    
    
    August 2024
88. KURONEN J, Horsfield ST, Pontinen AK, Mallawaarachchi S, et al
    Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs.
    Genome Res. 2024;34:1081-1088.
    PubMed     Abstract available
    
    
    
89. XIANG G, He X, Giardine BM, Isaac KJ, et al
    Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.
    Genome Res. 2024;34:1089-1105.
    PubMed     Abstract available
    
    
    July 2024
90. LEE S, Portlock T, Le Chatelier E, Garcia-Guevara F, et al
    Global compositional and functional states of the human gut microbiome in health and disease.
    Genome Res. 2024;34:967-978.
    PubMed     Abstract available
    
    
    
91. HIRTH A, Fatti E, Netz E, Acebron SP, et al
    DEAD box RNA helicases are pervasive protein kinase interactors and activators.
    Genome Res. 2024;34:952-966.
    PubMed     Abstract available
    
    
    
92. MORRISSEY A, Shi J, James DQ, Mahony S, et al
    Accurate allocation of multimapped reads enables regulatory element analysis at repeats.
    Genome Res. 2024;34:937-951.
    PubMed     Abstract available
    
    
    
93. BELLINZONA G, Nardi T, Castelli M, Batisti Biffignandi G, et al
    Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States.
    Genome Res. 2024;34:877-887.
    PubMed     Abstract available
    
    
    
94. BUCKLEY RM, Ostrander EA
    Large-scale genomic analysis of the domestic dog informs biological discovery.
    Genome Res. 2024;34:811-821.
    PubMed     Abstract available
    
    
    
95. ULRICH JU, Renard BY
    Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.
    Genome Res. 2024;34:914-924.
    PubMed     Abstract available
    
    
    June 2024
96. GABRIEL L, Bruna T, Hoff KJ, Ebel M, et al
    BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
    Genome Res. 2024;34:769-777.
    PubMed     Abstract available
    
    
    
97. BRUNA T, Lomsadze A, Borodovsky M
    GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.
    Genome Res. 2024;34:757-768.
    PubMed     Abstract available
    
    
    
98. WON S, Yu J, Kim H
    Identifying genes within pathways in unannotated genomes with PaGeSearch.
    Genome Res. 2024;34:784-795.
    PubMed     Abstract available
    
    
    
99. MURPHY WJ, Harris AJ
    Toward telomere-to-telomere cat genomes for precision medicine and conservation biology.
    Genome Res. 2024;34:655-664.
    PubMed     Abstract available
    
    
    
100. KOENIG Z, Yohannes MT, Nkambule LL, Zhao X, et al
     A harmonized public resource of deeply sequenced diverse human genomes.
     Genome Res. 2024;34:796-809.
     PubMed     Abstract available
     
     
     
101. GAMAARACHCHI H, Ferguson JM, Samarakoon H, Liyanage K, et al
     Simulation of nanopore sequencing signal data with tunable parameters.
     Genome Res. 2024;34:778-783.
     PubMed     Abstract available
     
     
     May 2024
102. CAI Q, Fu Y, Lyu C, Wang Z, et al
     A new framework for exploratory network mediator analysis in omics data.
     Genome Res. 2024;34:642-654.
     PubMed     Abstract available
     
     
     
103. JI S, Zhu T, Sethia A, Wang W, et al
     Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples.
     Genome Res. 2024;34:633-641.
     PubMed     Abstract available
     
     
     April 2024
104. LORIG-ROACH R, Meredith M, Monlong J, Jain M, et al
     Phased nanopore assembly with Shasta and modular graph phasing with GFAse.
     Genome Res. 2024;34:454-468.
     PubMed     Abstract available
     
     
     
105. FOROOZANDEH SHAHRAKI M, Farahbod M, Libbrecht MW
     Robust chromatin state annotation.
     Genome Res. 2024;34:469-483.
     PubMed     Abstract available
     
     
     March 2024
106. YU W, Luo H, Yang J, Zhang S, et al
     Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes.
     Genome Res. 2024;34:326-340.
     PubMed     Abstract available
     
     
     
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