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COVID-19: Daily Top 10 Papers


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Articles published in PLoS One

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    January 2021
  1. BHOYAR RC, Jain A, Sehgal P, Divakar MK, et al
    High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing.
    PLoS One. 2021;16:e0247115.
    PubMed     Abstract available


    January 2020
  2. KORDY K, Gaufin T, Mwangi M, Li F, et al
    Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve.
    PLoS One. 2020;15:e0219633.
    PubMed     Abstract available


  3. XU P, Tang G, Cui W, Chen G, et al
    Transcriptional Differences in Peanut (Arachis hypogaea L.) Seeds at the Freshly Harvested, After-ripening and Newly Germinated Seed Stages: Insights into the Regulatory Networks of Seed Dormancy Release and Germination.
    PLoS One. 2020;15:e0219413.
    PubMed     Abstract available


  4. GRAHAM CF, Boreham DR, Manzon RG, Stott W, et al
    How "simple" methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish.
    PLoS One. 2020;15:e0226608.
    PubMed     Abstract available


  5. NOTT MA, Driscoll HE, Takeda M, Vangala M, et al
    Advanced biofilm analysis in streams receiving organic deicer runoff.
    PLoS One. 2020;15:e0227567.
    PubMed     Abstract available


  6. LV L, Yu K, Lu H, Zhang X, et al
    Transcriptome-wide identification of novel circular RNAs in soybean in response to low-phosphorus stress.
    PLoS One. 2020;15:e0227243.
    PubMed     Abstract available


  7. RASMUSSEN SL, Nielsen JL, Jones OR, Berg TB, et al
    Genetic structure of the European hedgehog (Erinaceus europaeus) in Denmark.
    PLoS One. 2020;15:e0227205.
    PubMed     Abstract available


  8. SETIAWAN AB, Teo CH, Kikuchi S, Sassa H, et al
    Centromeres of Cucumis melo L. comprise Cmcent and two novel repeats, CmSat162 and CmSat189.
    PLoS One. 2020;15:e0227578.
    PubMed     Abstract available


  9. VEITH M, Gocmen B, Sotiropoulos K, Eleftherakos K, et al
    Phylogeographic analyses point to long-term survival on the spot in micro-endemic Lycian salamanders.
    PLoS One. 2020;15:e0226326.
    PubMed     Abstract available


  10. MA Z, Wang L, Zhao M, Gu S, et al
    iTRAQ proteomics reveals the regulatory response to Magnaporthe oryzae in durable resistant vs. susceptible rice genotypes.
    PLoS One. 2020;15:e0227470.
    PubMed     Abstract available


  11. ARAUCO-SHAPIRO G, Schumacher KI, Boersma D, Bouzat JL, et al
    The role of demographic history and selection in shaping genetic diversity of the Galapagos penguin (Spheniscus mendiculus).
    PLoS One. 2020;15:e0226439.
    PubMed     Abstract available


  12. LONGCHAMPS RJ, Castellani CA, Yang SY, Newcomb CE, et al
    Evaluation of mitochondrial DNA copy number estimation techniques.
    PLoS One. 2020;15:e0228166.
    PubMed     Abstract available


  13. HE D, Zhang J, Zhang X, He S, et al
    Development of SSR markers in Paeonia based on De Novo transcriptomic assemblies.
    PLoS One. 2020;15:e0227794.
    PubMed     Abstract available


  14. WISCOVITCH-RUSSO R, Rivera-Perez J, Narganes-Storde YM, Garcia-Roldan E, et al
    Pre-Columbian zoonotic enteric parasites: An insight into Puerto Rican indigenous culture diets and life styles.
    PLoS One. 2020;15:e0227810.
    PubMed     Abstract available


  15. KIM SH, Kim SW, Lim GH, Lyu JI, et al
    Transcriptome analysis to identify candidate genes associated with the yellow-leaf phenotype of a Cymbidium mutant generated by gamma-irradiation.
    PLoS One. 2020;15:e0228078.
    PubMed     Abstract available


  16. SMIDT EC, Paez MZ, Vieira LDN, Viruel J, et al
    Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae).
    PLoS One. 2020;15:e0227991.
    PubMed     Abstract available


  17. HERZBERG D, Strobel P, Muller H, Meneses C, et al
    Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness.
    PLoS One. 2020;15:e0228134.
    PubMed     Abstract available


  18. CHUNG YW, Gwak HJ, Moon S, Rho M, et al
    Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
    PLoS One. 2020;15:e0227886.
    PubMed     Abstract available


  19. DE CESARE A, Sala C, Castellani G, Astolfi A, et al
    Effect of Lactobacillus acidophilus D2/CSL (CECT 4529) supplementation in drinking water on chicken crop and caeca microbiome.
    PLoS One. 2020;15:e0228338.
    PubMed     Abstract available


  20. AHSAN T, Urmi NJ, Sajib AA
    Heterogeneity in the distribution of 159 drug-response related SNPs in world populations and their genetic relatedness.
    PLoS One. 2020;15:e0228000.
    PubMed     Abstract available


  21. TIAN X, Xie J, Yu J
    Physiological and transcriptomic responses of Lanzhou Lily (Lilium davidii, var. unicolor) to cold stress.
    PLoS One. 2020;15:e0227921.
    PubMed     Abstract available


  22. CHEN SM, Lin CE, Chen HH, Cheng YF, et al
    Effect of prednisolone on glyoxalase 1 in an inbred mouse model of aristolochic acid nephropathy using a proteomics method with fluorogenic derivatization-liquid chromatography-tandem mass spectrometry.
    PLoS One. 2020;15:e0227838.
    PubMed     Abstract available


  23. VAN HOUT D, Verschuuren TD, Bruijning-Verhagen PCJ, Bosch T, et al
    Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content.
    PLoS One. 2020;15:e0227604.
    PubMed     Abstract available


  24. KHADIR A, Madhu D, Kavalakatt S, Cherian P, et al
    PR3 levels are impaired in plasma and PBMCs from Arabs with cardiovascular diseases.
    PLoS One. 2020;15:e0227606.
    PubMed     Abstract available


  25. RONDINONE V, Serrecchia L, Parisi A, Fasanella A, et al
    Genetic characterization of Bacillus anthracis strains circulating in Italy from 1972 to 2018.
    PLoS One. 2020;15:e0227875.
    PubMed     Abstract available


  26. MOHAMED A, Collins J, Jiang H, Molendijk J, et al
    Concurrent lipidomics and proteomics on malignant plasma cells from multiple myeloma patients: Probing the lipid metabolome.
    PLoS One. 2020;15:e0227455.
    PubMed     Abstract available


  27. LV Y, He XY, Li D, Liu T, et al
    Sex-specific and opposite modulatory aspects revealed by PPI network and pathway analysis of ischemic stroke in humans.
    PLoS One. 2020;15:e0227481.
    PubMed     Abstract available


  28. HOANG TTH, Dang DA, Pham TH, Luong MH, et al
    Epidemiological and comparative genomic analysis of Bacillus anthracis isolated from northern Vietnam.
    PLoS One. 2020;15:e0228116.
    PubMed     Abstract available


  29. TFAILY MA, Nassar F, Sellam LS, Amir-Tidadini ZC, et al
    miRNA expression in advanced Algerian breast cancer tissues.
    PLoS One. 2020;15:e0227928.
    PubMed     Abstract available


  30. BABA T, Momen M, Campbell MT, Walia H, et al
    Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping.
    PLoS One. 2020;15:e0228118.
    PubMed     Abstract available


  31. RAMDASI AY, Arankalle VA
    The expression patterns of immune response genes in the Peripheral Blood Mononuclear cells of pregnant women presenting with subclinical or clinical HEV infection are different and trimester-dependent: A whole transcriptome analysis.
    PLoS One. 2020;15:e0228068.
    PubMed     Abstract available


  32. MOLES L, Gomez M, Moroder E, Bustos G, et al
    Staphylococcus epidermidis in feedings and feces of preterm neonates.
    PLoS One. 2020;15:e0227823.
    PubMed     Abstract available


  33. CHIUMIENTO IR, Ituarte S, Sun J, Qiu JW, et al
    Hemocyanin of the caenogastropod Pomacea canaliculata exhibits evolutionary differences among gastropod clades.
    PLoS One. 2020;15:e0228325.
    PubMed     Abstract available


  34. DAMAZIAK K, Kieliszek M, Buclaw M
    Characterization of structure and protein of vitelline membranes of precocial (ring-necked pheasant, gray partridge) and superaltricial (cockatiel parrot, domestic pigeon) birds.
    PLoS One. 2020;15:e0228310.
    PubMed     Abstract available


  35. MOBARK NA, Alharbi M, Alhabeeb L, AlMubarak L, et al
    Clinical management and genomic profiling of pediatric low-grade gliomas in Saudi Arabia.
    PLoS One. 2020;15:e0228356.
    PubMed     Abstract available


  36. ROMAGNOLI CL, Pellegrino KCM, Silva NM, Brianesi UA, et al
    Diversity of Mycobacteriaceae from aquatic environment at the Sao Paulo Zoological Park Foundation in Brazil.
    PLoS One. 2020;15:e0227759.
    PubMed     Abstract available


  37. MORRO B, Doherty MK, Balseiro P, Handeland SO, et al
    Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss).
    PLoS One. 2020;15:e0227003.
    PubMed     Abstract available


  38. RANDHAWA GS, Soltysiak MPM, El Roz H, de Souza CPE, et al
    Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study.
    PLoS One. 2020;15:e0232391.
    PubMed     Abstract available


  39. DEVANGA RAGUPATHI NK, Veeraraghavan B, Muthuirulandi Sethuvel DP, Anandan S, et al
    First Indian report on genome-wide comparison of multidrug-resistant Escherichia coli from blood stream infections.
    PLoS One. 2020;15:e0220428.
    PubMed     Abstract available


  40. VAN NEER W, Alhaique F, Wouters W, Dierickx K, et al
    Aquatic fauna from the Takarkori rock shelter reveals the Holocene central Saharan climate and palaeohydrography.
    PLoS One. 2020;15:e0228588.
    PubMed     Abstract available


  41. REYNOLDS DA, Yoo MJ, Dixson DL, Ross C, et al
    Exposure to the Florida red tide dinoflagellate, Karenia brevis, and its associated brevetoxins induces ecophysiological and proteomic alterations in Porites astreoides.
    PLoS One. 2020;15:e0228414.
    PubMed     Abstract available


  42. KIM MH, Jeong H, Sim YM, Lee S, et al
    Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications.
    PLoS One. 2020;15:e0229416.
    PubMed     Abstract available


  43. CASSINI CS, Taucce PPG, de Carvalho TR, Fouquet A, et al
    One step beyond a broad molecular phylogenetic analysis: Species delimitation of Adenomera marmorata Steindachner, 1867 (Anura: Leptodactylidae).
    PLoS One. 2020;15:e0229324.
    PubMed     Abstract available


  44. CRISCUOLO NG, Angelini C
    StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis.
    PLoS One. 2020;15:e0229330.
    PubMed     Abstract available


  45. YAO L, Yu Q, Huang M, Song Z, et al
    Comparative iTRAQ proteomic profiling of sweet orange fruit on sensitive and tolerant rootstocks infected by 'Candidatus Liberibacter asiaticus'.
    PLoS One. 2020;15:e0228876.
    PubMed     Abstract available


  46. ZHU W, Cheng X, Ren C, Chen J, et al
    Proteomic characterization and comparison of ram (Ovis aries) and buck (Capra hircus) spermatozoa proteome using a data independent acquisition mass spectometry (DIA-MS) approach.
    PLoS One. 2020;15:e0228656.
    PubMed     Abstract available


  47. GU L, Wang F, Lin Z, Xu T, et al
    Genetic characteristics of Jiaji Duck by whole genome re-sequencing.
    PLoS One. 2020;15:e0228964.
    PubMed     Abstract available


  48. IBETO L, Antonopoulos A, Grassi P, Pang PC, et al
    Insights into the hyperglycosylation of human chorionic gonadotropin revealed by glycomics analysis.
    PLoS One. 2020;15:e0228507.
    PubMed     Abstract available


  49. COOMBS GW, Baines SL, Howden BP, Swenson KM, et al
    Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus.
    PLoS One. 2020;15:e0228676.
    PubMed     Abstract available


  50. KHRUNIN AV, Khvorykh GV, Fedorov AN, Limborska SA, et al
    Genomic landscape of the signals of positive natural selection in populations of Northern Eurasia: A view from Northern Russia.
    PLoS One. 2020;15:e0228778.
    PubMed     Abstract available


  51. VOLC SM, Ramos CRN, Galvao HCR, Felicio PS, et al
    The Brazilian TP53 mutation (R337H) and sarcomas.
    PLoS One. 2020;15:e0227260.
    PubMed     Abstract available


  52. HIN N, Newman M, Kaslin J, Douek AM, et al
    Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2.
    PLoS One. 2020;15:e0227258.
    PubMed     Abstract available


  53. JHA AR, Shmalberg J, Tanprasertsuk J, Perry L, et al
    Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach.
    PLoS One. 2020;15:e0227289.
    PubMed     Abstract available


  54. PETZOLD A, Hassanin A
    A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla).
    PLoS One. 2020;15:e0217956.
    PubMed     Abstract available


  55. GENG W, Qi Y, Li W, McConville TH, et al
    Epidemiology of Staphylococcus aureus in neonates on admission to a Chinese neonatal intensive care unit.
    PLoS One. 2020;15:e0211845.
    PubMed     Abstract available


  56. KIM KH, Kim JY, Lim WJ, Jeong S, et al
    Genome-wide association and epistatic interactions of flowering time in soybean cultivar.
    PLoS One. 2020;15:e0228114.
    PubMed     Abstract available


  57. AL-WAJEEH AS, Salhimi SM, Al-Mansoub MA, Khalid IA, et al
    Comparative proteomic analysis of different stages of breast cancer tissues using ultra high performance liquid chromatography tandem mass spectrometer.
    PLoS One. 2020;15:e0227404.
    PubMed     Abstract available


  58. TUCCI P, Portela M, Chetto CR, Gonzalez-Sapienza G, et al
    Integrative proteomic and glycoproteomic profiling of Mycobacterium tuberculosis culture filtrate.
    PLoS One. 2020;15:e0221837.
    PubMed     Abstract available


  59. BRUMFIELD KD, Huq A, Colwell RR, Olds JL, et al
    Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
    PLoS One. 2020;15:e0228899.
    PubMed     Abstract available


  60. TUSIIME FM, Gizaw A, Gussarova G, Nemomissa S, et al
    Afro-alpine flagships revisited: Parallel adaptation, intermountain admixture and shallow genetic structuring in the giant senecios (Dendrosenecio).
    PLoS One. 2020;15:e0228979.
    PubMed     Abstract available


  61. YE L, Liu P, Shi T, Wang A, et al
    Transcriptomic analysis to elucidate the response of honeybees (Hymenoptera: Apidae) to amitraz treatment.
    PLoS One. 2020;15:e0228933.
    PubMed     Abstract available


  62. BELTER A, Barciszewski J, Barciszewska AM
    Revealing the epigenetic effect of temozolomide on glioblastoma cell lines in therapeutic conditions.
    PLoS One. 2020;15:e0229534.
    PubMed     Abstract available


  63. SOLLER JM, Ausband DE, Szykman Gunther M
    The curse of observer experience: Error in noninvasive genetic sampling.
    PLoS One. 2020;15:e0229762.
    PubMed     Abstract available


  64. RHEAD B, Shao X, Quach H, Ghai P, et al
    Global expression and CpG methylation analysis of primary endothelial cells before and after TNFa stimulation reveals gene modules enriched in inflammatory and infectious diseases and associated DMRs.
    PLoS One. 2020;15:e0230884.
    PubMed     Abstract available


  65. HORITA T, Gaballah MH, Fukuta M, Kanno S, et al
    Time course analysis of large-scale gene expression in incised muscle using correspondence analysis.
    PLoS One. 2020;15:e0230737.
    PubMed     Abstract available


  66. JANGID A, Fukuda S, Seki M, Horiuchi T, et al
    Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice.
    PLoS One. 2020;15:e0228358.
    PubMed     Abstract available


  67. QUINTEIRO J, Rodriguez-Castro J, Rey-Mendez M, Gonzalez-Henriquez N, et al
    Phylogeography of the insular populations of common octopus, Octopus vulgaris Cuvier, 1797, in the Atlantic Macaronesia.
    PLoS One. 2020;15:e0230294.
    PubMed     Abstract available


  68. NAINO JIKA AK, Le Ru B, Capdevielle-Dulac C, Chardonnet F, et al
    Population genetics of the Mediterranean corn borer (Sesamia nonagrioides) differs between wild and cultivated plants.
    PLoS One. 2020;15:e0230434.
    PubMed     Abstract available


  69. ALBRECHT F, Hering J, Fuchs E, Illera JC, et al
    Phylogeny of the Eurasian Wren Nannus troglodytes (Aves: Passeriformes: Troglodytidae) reveals deep and complex diversification patterns of Ibero-Maghrebian and Cyrenaican populations.
    PLoS One. 2020;15:e0230151.
    PubMed     Abstract available


  70. IVANOVA AA, Zhelezova AD, Chernov TI, Dedysh SN, et al
    Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils.
    PLoS One. 2020;15:e0230157.
    PubMed     Abstract available


  71. HERREN GL, Habraken J, Waeyenberge L, Haegeman A, et al
    Effects of synthetic fertilizer and farm compost on soil nematode community in long-term crop rotation plots: A morphological and metabarcoding approach.
    PLoS One. 2020;15:e0230153.
    PubMed     Abstract available


  72. SUO W, Shi X, Xu S, Li X, et al
    Towards low cost, multiplex clinical genotyping: 4-fluorescent Kompetitive Allele-Specific PCR and its application on pharmacogenetics.
    PLoS One. 2020;15:e0230445.
    PubMed     Abstract available


  73. HIRATSUKA VY, Beans JA, Blanchard JW, Reedy J, et al
    An Alaska Native community's views on genetic research, testing, and return of results: Results from a public deliberation.
    PLoS One. 2020;15:e0229540.
    PubMed     Abstract available


  74. TRON C, Woillard JB, Houssel-Debry P, David V, et al
    Pharmacogenetic-Whole blood and intracellular pharmacokinetic-Pharmacodynamic (PG-PK2-PD) relationship of tacrolimus in liver transplant recipients.
    PLoS One. 2020;15:e0230195.
    PubMed     Abstract available


  75. SOUTHEY BR, Rodriguez-Zas SL, Rhodes JS, Sweedler JV, et al
    Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies.
    PLoS One. 2020;15:e0228562.
    PubMed     Abstract available


  76. MAGALHAES BRDS, Sosa-Gomez DR, Dionisio JF, Dias FC, et al
    Cytogenetic markers applied to cytotaxonomy in two soybean pests: Anticarsia gemmatalis (Hubner, 1818) and Chrysodeixis includens (Walker, 1858).
    PLoS One. 2020;15:e0230244.
    PubMed     Abstract available


  77. FAHSBENDER E, Charlys da-Costa A, Elise Gill D, Augusto de Padua Milagres F, et al
    Plasma virome of 781 Brazilians with unexplained symptoms of arbovirus infection include a novel parvovirus and densovirus.
    PLoS One. 2020;15:e0229993.
    PubMed     Abstract available


  78. TIRUVAYIPATI S, Wolfgeher D, Yue M, Duan F, et al
    Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles.
    PLoS One. 2020;15:e0228871.
    PubMed     Abstract available


  79. LO S, Fatokun C, Boukar O, Gepts P, et al
    Identification of QTL for perenniality and floral scent in cowpea (Vigna unguiculata [L.] Walp.).
    PLoS One. 2020;15:e0229167.
    PubMed     Abstract available


  80. PUJOL-CANADELL M, Perrier JR, Cunha L, Shuryak I, et al
    Cytogenetically-based biodosimetry after high doses of radiation.
    PLoS One. 2020;15:e0228350.
    PubMed     Abstract available


  81. SZILAGYI GT, Nawrocki AM, Eros K, Schmidt J, et al
    Proteomic changes during experimental de- and remyelination in the corpus callosum.
    PLoS One. 2020;15:e0230249.
    PubMed     Abstract available


  82. FARIA DM, da Silva JM Jr, Pires Costa L, Rezende Paiva S, et al
    Low mtDNA diversity in a highly differentiated population of spinner dolphins (Stenella longirostris) from the Fernando de Noronha Archipelago, Brazil.
    PLoS One. 2020;15:e0230660.
    PubMed     Abstract available


  83. LOPEZ-GARCIA G, Jerez JM, Franco L, Veredas FJ, et al
    Transfer learning with convolutional neural networks for cancer survival prediction using gene-expression data.
    PLoS One. 2020;15:e0230536.
    PubMed     Abstract available


  84. LOZADA DN, Ward BP, Carter AH
    Gains through selection for grain yield in a winter wheat breeding program.
    PLoS One. 2020;15:e0221603.
    PubMed     Abstract available


  85. FUKUDA S, Tacharoenmuang R, Guntapong R, Upachai S, et al
    Full genome characterization of novel DS-1-like G9P[8] rotavirus strains that have emerged in Thailand.
    PLoS One. 2020;15:e0231099.
    PubMed     Abstract available


  86. TIMPANO EK, Scheible MKR, Meiklejohn KA
    Optimization of the second internal transcribed spacer (ITS2) for characterizing land plants from soil.
    PLoS One. 2020;15:e0231436.
    PubMed     Abstract available


  87. RAMOS-NINO ME, Fitzpatrick DM, Eckstrom KM, Tighe S, et al
    Metagenomic analysis of Aedes aegypti and Culex quinquefasciatus mosquitoes from Grenada, West Indies.
    PLoS One. 2020;15:e0231047.
    PubMed     Abstract available


  88. NAM B, Kim SA, Park SD, Kim HJ, et al
    Regulatory effects of Lactobacillus plantarum HY7714 on skin health by improving intestinal condition.
    PLoS One. 2020;15:e0231268.
    PubMed     Abstract available


  89. JIANG Y, Sun Q, Fan M, Zhang X, et al
    Molecular characterization of a whirlin-like protein with biomineralization-related functions from the shell of Mytilus coruscus.
    PLoS One. 2020;15:e0231414.
    PubMed     Abstract available


  90. TATEHANA M, Kimura R, Mochizuki K, Inada H, et al
    Comprehensive histochemical profiles of histone modification in male germline cells during meiosis and spermiogenesis: Comparison of young and aged testes in mice.
    PLoS One. 2020;15:e0230930.
    PubMed     Abstract available


  91. HESS MK, Rowe SJ, Van Stijn TC, Henry HM, et al
    A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling.
    PLoS One. 2020;15:e0219882.
    PubMed     Abstract available


  92. BLEKHMAN A, Goryacheva I, Schepetov D, Zakharov I, et al
    Variability of the mitochondrial CO1 gene in native and invasive populations of Harmonia axyridis Pall. comparative analysis.
    PLoS One. 2020;15:e0231009.
    PubMed     Abstract available


  93. ROSSO A, Pitini E, D'Andrea E, Di Marco M, et al
    Genomics knowledge and attitudes among European public health professionals: Results of a cross-sectional survey.
    PLoS One. 2020;15:e0230749.
    PubMed     Abstract available


  94. CHARMET G, Tran LG, Auzanneau J, Rincent R, et al
    BWGS: A R package for genomic selection and its application to a wheat breeding programme.
    PLoS One. 2020;15:e0222733.
    PubMed     Abstract available


  95. GAO J, Li WB, Liu HF, Chen FB, et al
    Identification of differential expression genes related to anthocyanin biosynthesis in carmine radish (Raphanus sativus L.) fleshy roots using comparative RNA-Seq method.
    PLoS One. 2020;15:e0231729.
    PubMed     Abstract available


  96. BALL S, Hand N, Willman F, Durrant C, et al
    Genetic and demographic vulnerability of adder populations: Results of a genetic study in mainland Britain.
    PLoS One. 2020;15:e0231809.
    PubMed     Abstract available


  97. JOSHI B, Lyngdoh S, Singh SK, Sharma R, et al
    Revisiting the Woolly wolf (Canis lupus chanco) phylogeny in Himalaya: Addressing taxonomy, spatial extent and distribution of an ancient lineage in Asia.
    PLoS One. 2020;15:e0231621.
    PubMed     Abstract available


  98. UJCIKOVA H, Cechova K, Jagr M, Roubalova L, et al
    Proteomic analysis of protein composition of rat hippocampus exposed to morphine for 10 days; comparison with animals after 20 days of morphine withdrawal.
    PLoS One. 2020;15:e0231721.
    PubMed     Abstract available


  99. JEONG DW, Lee B, Heo S, Oh Y, et al
    Two genes involved in clindamycin resistance of Bacillus licheniformis and Bacillus paralicheniformis identified by comparative genomic analysis.
    PLoS One. 2020;15:e0231274.
    PubMed     Abstract available


  100. BRUMFIELD KD, Hasan NA, Leddy MB, Cotruvo JA, et al
    A comparative analysis of drinking water employing metagenomics.
    PLoS One. 2020;15:e0231210.
    PubMed     Abstract available


  101. KAUR K, Khatri I, Akhtar A, Subramanian S, et al
    Metagenomics analysis reveals features unique to Indian distal gut microbiota.
    PLoS One. 2020;15:e0231197.
    PubMed     Abstract available


  102. ZACZEK-MOCZYDLOWSKA MA, Young GK, Trudgett J, Plahe C, et al
    Phage cocktail containing Podoviridae and Myoviridae bacteriophages inhibits the growth of Pectobacterium spp. under in vitro and in vivo conditions.
    PLoS One. 2020;15:e0230842.
    PubMed     Abstract available


  103. ZYTNICKI M, Gaspin C
    mmannot: How to improve small-RNA annotation?
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    Diversity of a cytokinin dehydrogenase gene in wild and cultivated barley.
    PLoS One. 2019;14:e0225899.
    PubMed     Abstract available


  741. CHOI S, Lee JG, Lee AR, Eun CS, et al
    Helicobacter pylori antibody and pepsinogen testing for predicting gastric microbiome abundance.
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    PubMed     Abstract available


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    Skeletal muscle alterations in tachycardia-induced heart failure are linked to deficient natriuretic peptide signalling and are attenuated by RAS-/NEP-inhibition.
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    PubMed     Abstract available


  743. ADDO S, Klingel S, Hinrichs D, Thaller G, et al
    Runs of Homozygosity and NetView analyses provide new insight into the genome-wide diversity and admixture of three German cattle breeds.
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    PubMed     Abstract available


  744. CHEONG HC, Yap PSX, Chong CW, Cheok YY, et al
    Diversity of endocervical microbiota associated with genital Chlamydia trachomatis infection and infertility among women visiting obstetrics and gynecology clinics in Malaysia.
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    PubMed     Abstract available


  745. YUSUF A, Peltekova I, Savion-Lemieux T, Frei J, et al
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    PubMed     Abstract available


  746. TAMPUU A, Bzhalava Z, Dillner J, Vicente R, et al
    ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples.
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    PubMed     Abstract available


  747. DUANGKUMPHA K, Stoll T, Phetcharaburanin J, Yongvanit P, et al
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    PubMed     Abstract available


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    Population genetic structure of Bemisia tabaci MED (Hemiptera: Aleyrodidae) in Korea.
    PLoS One. 2019;14:e0220327.
    PubMed     Abstract available


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    Reconstruction of the spatial and temporal dynamics of hepatitis B virus genotype D in the Americas.
    PLoS One. 2019;14:e0220342.
    PubMed     Abstract available


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    Genomic selection for productive traits in biparental cassava breeding populations.
    PLoS One. 2019;14:e0220245.
    PubMed     Abstract available


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    Phylogeography and conservation genetics of the rare and relict Bretschneidera sinensis (Akaniaceae).
    PLoS One. 2018;13:e0189034.
    PubMed     Abstract available


  752. CHIVA C, Olivella R, Borras E, Espadas G, et al
    QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories.
    PLoS One. 2018;13:e0189209.
    PubMed     Abstract available


  753. SCHNITZLER A, Granado J, Putelat O, Arbogast RM, et al
    Genetic diversity, genetic structure and diet of ancient and contemporary red deer (Cervus elaphus L.) from north-eastern France.
    PLoS One. 2018;13:e0189278.
    PubMed     Abstract available


  754. KREHENWINKEL H, Fong M, Kennedy S, Huang EG, et al
    The effect of DNA degradation bias in passive sampling devices on metabarcoding studies of arthropod communities and their associated microbiota.
    PLoS One. 2018;13:e0189188.
    PubMed     Abstract available


  755. ZABOIKIN M, Freter C, Srinivasakumar N
    Gaussian decomposition of high-resolution melt curve derivatives for measuring genome-editing efficiency.
    PLoS One. 2018;13:e0190192.
    PubMed     Abstract available


  756. BZHALAVA Z, Hultin E, Dillner J
    Extension of the viral ecology in humans using viral profile hidden Markov models.
    PLoS One. 2018;13:e0190938.
    PubMed     Abstract available


  757. ANDLEY UP, Tycksen E, McGlasson-Naumann BN, Hamilton PD, et al
    Probing the changes in gene expression due to alpha-crystallin mutations in mouse models of hereditary human cataract.
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    PubMed     Abstract available


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    Phylogeography of screaming hairy armadillo Chaetophractus vellerosus: Successive disjunctions and extinctions due to cyclical climatic changes in southern South America.
    PLoS One. 2018;13:e0190944.
    PubMed     Abstract available


  759. FISCH-MULLER S, Mol JHA, Covain R
    An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complex.
    PLoS One. 2018;13:e0189789.
    PubMed     Abstract available


  760. ABOU-ANTOUN TJ, Nazarian J, Ghanem A, Vukmanovic S, et al
    Molecular and functional analysis of anchorage independent, treatment-evasive neuroblastoma tumorspheres with enhanced malignant properties: A possible explanation for radio-therapy resistance.
    PLoS One. 2018;13:e0189711.
    PubMed     Abstract available


  761. CLARK CG, Chen CY, Berry C, Walker M, et al
    Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds.
    PLoS One. 2018;13:e0190836.
    PubMed     Abstract available


  762. GUO WL, Chen BH, Chen XJ, Guo YY, et al
    Transcriptome profiling of pumpkin (Cucurbita moschata Duch.) leaves infected with powdery mildew.
    PLoS One. 2018;13:e0190175.
    PubMed     Abstract available


  763. CHOUDHARY N, Singh V
    A census of P. longum's phytochemicals and their network pharmacological evaluation for identifying novel drug-like molecules against various diseases, with a special focus on neurological disorders.
    PLoS One. 2018;13:e0191006.
    PubMed     Abstract available


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    Transcriptome analysis during ripening of table grape berry cv. Thompson Seedless.
    PLoS One. 2018;13:e0190087.
    PubMed     Abstract available


  765. VILLEGAS LEM, Campolina TB, Barnabe NR, Orfano AS, et al
    Zika virus infection modulates the bacterial diversity associated with Aedes aegypti as revealed by metagenomic analysis.
    PLoS One. 2018;13:e0190352.
    PubMed     Abstract available


  766. CHOI JE, Nguyen CM, Lee B, Park JH, et al
    Isolation and characterization of a novel metagenomic enzyme capable of degrading bacterial phytotoxin toxoflavin.
    PLoS One. 2018;13:e0183893.
    PubMed     Abstract available


  767. DOGAN MV, Grumbach IM, Michaelson JJ, Philibert RA, et al
    Integrated genetic and epigenetic prediction of coronary heart disease in the Framingham Heart Study.
    PLoS One. 2018;13:e0190549.
    PubMed     Abstract available


  768. PETKEVICIUTE R, Stunzenas V, Staneviciute G
    Comments on species divergence in the genus Sphaerium (Bivalvia) and phylogenetic affinities of Sphaerium nucleus and S. corneum var. mamillanum based on karyotypes and sequences of 16S and ITS1 rDNA.
    PLoS One. 2018;13:e0191427.
    PubMed     Abstract available


  769. LIU J, Liu J, Wang G, Liu G, et al
    Electroacupuncture at Guanyuan (CV 4), Zusanli (ST 36) and Baihui (DU 20) regulate the aging-related changes in gene expression profile of the hippocampus in sub-acutely aging rats.
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    PubMed     Abstract available


  770. TALUKDER SK, Azhaguvel P, Chekhovskiy K, Saha MC, et al
    Molecular discrimination of tall fescue morphotypes in association with Festuca relatives.
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    PubMed     Abstract available


  772. ZHAN Y, Marchand CH, Maes A, Mauries A, et al
    Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii.
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    PubMed     Abstract available


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    PubMed     Abstract available


  774. REYES-VELASCO J, Manthey JD, Bourgeois Y, Freilich X, et al
    Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data.
    PLoS One. 2018;13:e0190440.
    PubMed     Abstract available


  775. MAYFIELD AB, Chen YJ, Lu CY, Chen CS, et al
    The proteomic response of the reef coral Pocillopora acuta to experimentally elevated temperatures.
    PLoS One. 2018;13:e0192001.
    PubMed     Abstract available


  776. HIBINO A, Saito R, Taniguchi K, Zaraket H, et al
    Molecular epidemiology of human respiratory syncytial virus among children in Japan during three seasons and hospitalization risk of genotype ON1.
    PLoS One. 2018;13:e0192085.
    PubMed     Abstract available


  777. GHANDHI SA, Turner HC, Shuryak I, Dugan GO, et al
    Whole thorax irradiation of non-human primates induces persistent nuclear damage and gene expression changes in peripheral blood cells.
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    PubMed     Abstract available


  778. ZHAN XY, Zhu QY
    Molecular typing of Legionella pneumophila isolates from environmental water samples and clinical samples using a five-gene sequence typing and standard Sequence-Based Typing.
    PLoS One. 2018;13:e0190986.
    PubMed     Abstract available


  779. AIBEKOVA L, Foley B, Hortelano G, Raees M, et al
    Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries.
    PLoS One. 2018;13:e0191891.
    PubMed     Abstract available


  780. NOLL LW, Worley JN, Yang X, Shridhar PB, et al
    Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin.
    PLoS One. 2018;13:e0191362.
    PubMed     Abstract available


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    Widespread introgression of mountain hare genes into Fennoscandian brown hare populations.
    PLoS One. 2018;13:e0191790.
    PubMed     Abstract available


  782. ALKHAMIS MA, Gallardo C, Jurado C, Soler A, et al
    Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa.
    PLoS One. 2018;13:e0192565.
    PubMed     Abstract available


  783. VONDRACEK D, Fuchsova A, Ahrens D, Kral D, et al
    Phylogeography and DNA-based species delimitation provide insight into the taxonomy of the polymorphic rose chafer Protaetia (Potosia) cuprea species complex (Coleoptera: Scarabaeidae: Cetoniinae) in the Western Palearctic.
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    PubMed     Abstract available


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    Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts.
    PLoS One. 2018;13:e0192412.
    PubMed     Abstract available


  785. TADESSE G, Tessema TS, Beyene G, Aseffa A, et al
    Molecular epidemiology of fluoroquinolone resistant Salmonella in Africa: A systematic review and meta-analysis.
    PLoS One. 2018;13:e0192575.
    PubMed     Abstract available


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    shinyGISPA: A web application for characterizing phenotype by gene sets using multiple omics data combinations.
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    PubMed     Abstract available


  787. DE LA FUENTE C, Pinkham C, Dabbagh D, Beitzel B, et al
    Phosphoproteomic analysis reveals Smad protein family activation following Rift Valley fever virus infection.
    PLoS One. 2018;13:e0191983.
    PubMed     Abstract available


  788. YANG H, Cai Y, Zhuo Z, Yang W, et al
    Transcriptome analysis in different developmental stages of Batocera horsfieldi (Coleoptera: Cerambycidae) and comparison of candidate olfactory genes.
    PLoS One. 2018;13:e0192730.
    PubMed     Abstract available


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    Molecular epidemiology of tuberculosis in Tasmania and genomic characterisation of its first known multi-drug resistant case.
    PLoS One. 2018;13:e0192351.
    PubMed     Abstract available


  790. KANITZ R, Guillot EG, Antoniazza S, Neuenschwander S, et al
    Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses.
    PLoS One. 2018;13:e0192460.
    PubMed     Abstract available


  791. VALLES SM, Porter SD, Calcaterra LA
    Prospecting for viral natural enemies of the fire ant Solenopsis invicta in Argentina.
    PLoS One. 2018;13:e0192377.
    PubMed     Abstract available


  792. DRAG M, Hansen MB, Kadarmideen HN
    Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.
    PLoS One. 2018;13:e0192673.
    PubMed     Abstract available


  793. KUZUYA K, Ichihara S, Suzuki Y, Inoue C, et al
    Proteomics analysis identified peroxiredoxin 2 involved in early-phase left ventricular impairment in hamsters with cardiomyopathy.
    PLoS One. 2018;13:e0192624.
    PubMed     Abstract available


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    Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia.
    PLoS One. 2018;13:e0192386.
    PubMed     Abstract available


  795. KHAN R, Roy N, Choi K, Lee SW, et al
    Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis.
    PLoS One. 2018;13:e0192277.
    PubMed     Abstract available


  796. DONOVAN PD, Gonzalez G, Higgins DG, Butler G, et al
    Identification of fungi in shotgun metagenomics datasets.
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    PubMed     Abstract available


  797. DOUILLARD FP, Mora D, Eijlander RT, Wels M, et al
    Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.
    PLoS One. 2018;13:e0192452.
    PubMed     Abstract available


  798. KAMAL AHM, Fessler MB, Chowdhury SM
    Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages.
    PLoS One. 2018;13:e0193104.
    PubMed     Abstract available


  799. VELEZ G, Machlab DA, Tang PH, Sun Y, et al
    Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases.
    PLoS One. 2018;13:e0193250.
    PubMed     Abstract available


  800. COSTA WJEM, Amorim PF, Mattos JLO
    Synchronic historical patterns of species diversification in seasonal aplocheiloid killifishes of the semi-arid Brazilian Caatinga.
    PLoS One. 2018;13:e0193021.
    PubMed     Abstract available


  801. TILAHUN M, Ameni G, Desta K, Zewude A, et al
    Molecular epidemiology and drug sensitivity pattern of Mycobacterium tuberculosis strains isolated from pulmonary tuberculosis patients in and around Ambo Town, Central Ethiopia.
    PLoS One. 2018;13:e0193083.
    PubMed     Abstract available


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    Identification and characterization of microRNAs in the intestinal tissues of sheep (Ovis aries).
    PLoS One. 2018;13:e0193371.
    PubMed     Abstract available


  803. DIETRICH MA, Ciereszko A
    Proteomic characterization of fresh spermatozoa and supernatant after cryopreservation in relation to freezability of carp (Cyprinus carpio L) semen.
    PLoS One. 2018;13:e0192972.
    PubMed     Abstract available


  804. KORSHUNOVA T, Lundin K, Malmberg K, Picton B, et al
    First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution.
    PLoS One. 2018;13:e0192177.
    PubMed     Abstract available


  805. PRIETO-TORRES DA, Cuervo AM, Bonaccorso E
    On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes.
    PLoS One. 2018;13:e0191598.
    PubMed     Abstract available


  806. BHOGOJU S, Nahashon S, Wang X, Darris C, et al
    A comparative analysis of microbial profile of Guinea fowl and chicken using metagenomic approach.
    PLoS One. 2018;13:e0191029.
    PubMed     Abstract available


  807. TEIXEIRA MA, Sela N, Atamian HS, Bao E, et al
    Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.
    PLoS One. 2018;13:e0193239.
    PubMed     Abstract available


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    Integrated analysis of tumor differentiation genes in pancreatic adenocarcinoma.
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    PubMed     Abstract available


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    Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species.
    PLoS One. 2018;13:e0192678.
    PubMed     Abstract available


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    HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold.
    PLoS One. 2018;13:e0193757.
    PubMed     Abstract available


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    The phylogenetic analysis of VP1 genomic region in foot-and-mouth disease virus serotype O isolates in Sri Lanka reveals the existence of 'Srl-97', a newly named endemic lineage.
    PLoS One. 2018;13:e0194077.
    PubMed     Abstract available


  812. CHAVARIE L, Howland KL, Harris LN, Hansen MJ, et al
    From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?
    PLoS One. 2018;13:e0193925.
    PubMed     Abstract available


  813. JOHNSON M, Alsaleh N, Mendoza RP, Persaud I, et al
    Genomic and transcriptomic comparison of allergen and silver nanoparticle-induced mast cell degranulation reveals novel non-immunoglobulin E mediated mechanisms.
    PLoS One. 2018;13:e0193499.
    PubMed     Abstract available


  814. DAANE KM, Middleton MC, Sforza RFH, Kamps-Hughes N, et al
    Determining the geographic origin of invasive populations of the mealybug Planococcus ficus based on molecular genetic analysis.
    PLoS One. 2018;13:e0193852.
    PubMed     Abstract available


  815. BARTOSOVA-SOJKOVA P, Lovy A, Reed CC, Lisnerova M, et al
    Life in a rock pool: Radiation and population genetics of myxozoan parasites in hosts inhabiting restricted spaces.
    PLoS One. 2018;13:e0194042.
    PubMed     Abstract available


  816. KIM K, Jung J, Caetano-Anolles K, Sung S, et al
    Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle.
    PLoS One. 2018;13:e0193701.
    PubMed     Abstract available


  817. ZHANG Z, Du H, Bai L, Yang C, et al
    Whole genome bisulfite sequencing reveals unique adaptations to high-altitude environments in Tibetan chickens.
    PLoS One. 2018;13:e0193597.
    PubMed     Abstract available


  818. THAPA K, Manandhar S, Bista M, Shakya J, et al
    Assessment of genetic diversity, population structure, and gene flow of tigers (Panthera tigris tigris) across Nepal's Terai Arc Landscape.
    PLoS One. 2018;13:e0193495.
    PubMed     Abstract available


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    Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions.
    PLoS One. 2018;13:e0193739.
    PubMed     Abstract available


  820. ZHANG X, Chen D, Xu G, Huang W, et al
    Molecular epidemiology and drug resistant mechanism in carbapenem-resistant Klebsiella pneumoniae isolated from pediatric patients in Shanghai, China.
    PLoS One. 2018;13:e0194000.
    PubMed     Abstract available


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    Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.
    PLoS One. 2018;13:e0193949.
    PubMed     Abstract available


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    Phylogeography of Daphnia magna Straus (Crustacea: Cladocera) in Northern Eurasia: Evidence for a deep longitudinal split between mitochondrial lineages.
    PLoS One. 2018;13:e0194045.
    PubMed     Abstract available


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    Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies.
    PLoS One. 2018;13:e0193588.
    PubMed     Abstract available


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    Maternal DNA lineages at the gate of Europe in the 10th century AD.
    PLoS One. 2018;13:e0193578.
    PubMed     Abstract available


  825. AGARAS BC, Iriarte A, Valverde CF
    Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.
    PLoS One. 2018;13:e0194088.
    PubMed     Abstract available


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    Integrated analysis of transcriptome and proteome changes related to the Ogura cytoplasmic male sterility in cabbage.
    PLoS One. 2018;13:e0193462.
    PubMed     Abstract available


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    Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients.
    PLoS One. 2018;13:e0193943.
    PubMed     Abstract available


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    Proteomic analysis of corneal endothelial cell-descemet membrane tissues reveals influence of insulin dependence and disease severity in type 2 diabetes mellitus.
    PLoS One. 2018;13:e0192287.
    PubMed     Abstract available


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    Why West? Comparisons of clinical, genetic and molecular features of infants with and without spasms.
    PLoS One. 2018;13:e0193599.
    PubMed     Abstract available


  830. MIYAUCHI E, Furuta T, Ohtsuki S, Tachikawa M, et al
    Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics.
    PLoS One. 2018;13:e0193799.
    PubMed     Abstract available


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    Transcriptome analysis of nitric oxide-responsive genes in upland cotton (Gossypium hirsutum).
    PLoS One. 2018;13:e0192367.
    PubMed     Abstract available


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    Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
    PLoS One. 2018;13:e0192165.
    PubMed     Abstract available


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    Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein.
    PLoS One. 2018;13:e0193170.
    PubMed     Abstract available


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    Recombination and peak jumping.
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    PubMed     Abstract available


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    Computational de novo discovery of distinguishing genes for biological processes and cell types in complex tissues.
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    Genomic diversity of Taylorella equigenitalis introduced into the United States from 1978 to 2012.
    PLoS One. 2018;13:e0194253.
    PubMed     Abstract available


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    The influence of transcript assembly on the proteogenomics discovery of microproteins.
    PLoS One. 2018;13:e0194518.
    PubMed     Abstract available


  838. GELDENHUYS M, Mortlock M, Weyer J, Bezuidt O, et al
    A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa.
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    Detection of genomic structural variations in Guizhou indigenous pigs and the comparison with other breeds.
    PLoS One. 2018;13:e0194282.
    PubMed     Abstract available


  840. DONG Y, Sun Y, Qin C
    Predicting protein complexes using a supervised learning method combined with local structural information.
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    PubMed     Abstract available


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    Comparison of secretome from osteoblasts derived from sclerotic versus non-sclerotic subchondral bone in OA: A pilot study.
    PLoS One. 2018;13:e0194591.
    PubMed     Abstract available


  842. OXUSOFF L, Prea P, Perez Y
    A complete logical approach to resolve the evolution and dynamics of mitochondrial genome in bilaterians.
    PLoS One. 2018;13:e0194334.
    PubMed     Abstract available


  843. VISSER JH, Bennett NC, Jansen van Vuuren B
    Spatial genetic diversity in the Cape mole-rat, Georychus capensis: Extreme isolation of populations in a subterranean environment.
    PLoS One. 2018;13:e0194165.
    PubMed     Abstract available


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    Antifungal activity, main active components and mechanism of Curcuma longa extract against Fusarium graminearum.
    PLoS One. 2018;13:e0194284.
    PubMed     Abstract available


  845. BLANCO-GUILLOT F, Castaneda-Cediel ML, Cruz-Hervert P, Ferreyra-Reyes L, et al
    Genotyping and spatial analysis of pulmonary tuberculosis and diabetes cases in the state of Veracruz, Mexico.
    PLoS One. 2018;13:e0193911.
    PubMed     Abstract available


  846. PAROLO S, Marchetti L, Lauria M, Misselbeck K, et al
    Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy.
    PLoS One. 2018;13:e0194225.
    PubMed     Abstract available


  847. HAJJEJ A, Almawi WY, Arnaiz-Villena A, Hattab L, et al
    The genetic heterogeneity of Arab populations as inferred from HLA genes.
    PLoS One. 2018;13:e0192269.
    PubMed     Abstract available


  848. WILSON AM, van der Nest MA, Wilken PM, Wingfield MJ, et al
    Pheromone expression reveals putative mechanism of unisexuality in a saprobic ascomycete fungus.
    PLoS One. 2018;13:e0192517.
    PubMed     Abstract available


  849. SUN X, Stewart DA, Sandhu R, Kirk EL, et al
    Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue.
    PLoS One. 2018;13:e0193792.
    PubMed     Abstract available


  850. WEBER KS, Bridgewater LC, Jensen JL, Breakwell DP, et al
    Personal microbiome analysis improves student engagement and interest in Immunology, Molecular Biology, and Genomics undergraduate courses.
    PLoS One. 2018;13:e0193696.
    PubMed     Abstract available


  851. PEOPLES LM, Donaldson S, Osuntokun O, Xia Q, et al
    Vertically distinct microbial communities in the Mariana and Kermadec trenches.
    PLoS One. 2018;13:e0195102.
    PubMed     Abstract available


  852. SEMERARO R, Orlandini V, Magi A
    Xome-Blender: A novel cancer genome simulator.
    PLoS One. 2018;13:e0194472.
    PubMed     Abstract available


  853. STOJANOVA B, Surinova M, Klapste J, Kolarikova V, et al
    Adaptive differentiation of Festuca rubra along a climate gradient revealed by molecular markers and quantitative traits.
    PLoS One. 2018;13:e0194670.
    PubMed     Abstract available


  854. CIRILLO E, Kutmon M, Gonzalez Hernandez M, Hooimeijer T, et al
    From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results.
    PLoS One. 2018;13:e0193515.
    PubMed     Abstract available


  855. BAMBHROLIYA A, Van Wyhe RD, Kumar S, Debeb BG, et al
    Gene set analysis of post-lactational mammary gland involution gene signatures in inflammatory and triple-negative breast cancer.
    PLoS One. 2018;13:e0192689.
    PubMed     Abstract available


  856. HENNEMAN P, Bouman A, Mul A, Knegt L, et al
    Widespread domain-like perturbations of DNA methylation in whole blood of Down syndrome neonates.
    PLoS One. 2018;13:e0194938.
    PubMed     Abstract available


  857. JOENVAARA S, Saraswat M, Kuusela P, Saraswat S, et al
    Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients.
    PLoS One. 2018;13:e0195006.
    PubMed     Abstract available


  858. CARTMELL KB, Sterba KR, Pickett K, Zapka J, et al
    Availability of patient-centered cancer support services: A statewide survey of cancer centers.
    PLoS One. 2018;13:e0194649.
    PubMed     Abstract available


  859. KELLY AC, Ward TJ
    Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen.
    PLoS One. 2018;13:e0194616.
    PubMed     Abstract available


  860. DI FEDE M, Biagini M, Cartocci E, Parillo C, et al
    Neisseria Heparin Binding Antigen is targeted by the human alternative pathway C3-convertase.
    PLoS One. 2018;13:e0194662.
    PubMed     Abstract available


  861. DEPERI SI, Tagliotti ME, Bedogni MC, Manrique-Carpintero NC, et al
    Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs.
    PLoS One. 2018;13:e0194398.
    PubMed     Abstract available


  862. FILIPOVA D, Henry M, Rotshteyn T, Brunn A, et al
    Distinct transcriptomic changes in E14.5 mouse skeletal muscle lacking RYR1 or Cav1.1 converge at E18.5.
    PLoS One. 2018;13:e0194428.
    PubMed     Abstract available


  863. DA SILVA M, Noll FB, E Castro ACM
    Phylogeographic analysis reveals high genetic structure with uniform phenotypes in the paper wasp Protonectarina sylveirae (Hymenoptera: Vespidae).
    PLoS One. 2018;13:e0194424.
    PubMed     Abstract available


  864. GARRIS HW, Baldwin SA, Taylor J, Gurr DB, et al
    Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment.
    PLoS One. 2018;13:e0196032.
    PubMed     Abstract available


  865. ROSLI R, Amiruddin N, Ab Halim MA, Chan PL, et al
    Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.
    PLoS One. 2018;13:e0194792.
    PubMed     Abstract available


  866. YANG S, Wang Y, Wang L, Shi Z, et al
    RNA-Seq reveals differentially expressed genes affecting polyunsaturated fatty acids percentage in the Huangshan Black chicken population.
    PLoS One. 2018;13:e0195132.
    PubMed     Abstract available


  867. SCHUSTER TM, Setaro SD, Tibbits JFG, Batty EL, et al
    Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae).
    PLoS One. 2018;13:e0195034.
    PubMed     Abstract available


  868. CHAI JH, Lee CK, Lee HK, Wong N, et al
    Cost-benefit analysis of introducing next-generation sequencing (metagenomic) pathogen testing in the setting of pyrexia of unknown origin.
    PLoS One. 2018;13:e0194648.
    PubMed     Abstract available


  869. JMEL H, Romdhane L, Ben Halima Y, Hechmi M, et al
    Pharmacogenetic landscape of Metabolic Syndrome components drug response in Tunisia and comparison with worldwide populations.
    PLoS One. 2018;13:e0194842.
    PubMed     Abstract available


  870. SELA I, Wolf YI, Koonin EV
    Estimation of universal and taxon-specific parameters of prokaryotic genome evolution.
    PLoS One. 2018;13:e0195571.
    PubMed     Abstract available


  871. HU Y, Hao X, Chen L, Akhberdi O, et al
    Galpha-cAMP/PKA pathway positively regulates pigmentation, chaetoglobosin A biosynthesis and sexual development in Chaetomium globosum.
    PLoS One. 2018;13:e0195553.
    PubMed     Abstract available


  872. KEREN-AVIRAM G, Dachet F, Bagla S, Balan K, et al
    Proteomic analysis of human epileptic neocortex predicts vascular and glial changes in epileptic regions.
    PLoS One. 2018;13:e0195639.
    PubMed     Abstract available


  873. ZHOU N, Katz M, Knecht W, Compagno C, et al
    Genome dynamics and evolution in yeasts: A long-term yeast-bacteria competition experiment.
    PLoS One. 2018;13:e0194911.
    PubMed     Abstract available


  874. FERREIRA DA SILVA MJ, Kopp GH, Casanova C, Godinho R, et al
    Disrupted dispersal and its genetic consequences: Comparing protected and threatened baboon populations (Papio papio) in West Africa.
    PLoS One. 2018;13:e0194189.
    PubMed     Abstract available


  875. MAHMOUD M, Zeng Y, Shirali M, Yin T, et al
    Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens.
    PLoS One. 2018;13:e0194374.
    PubMed     Abstract available


  876. GOLIZEH M, Melendez-Pena CE, Ward BJ, Saeed S, et al
    Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging.
    PLoS One. 2018;13:e0195148.
    PubMed     Abstract available


  877. UMAIR M, Abbasi BH, Sharif S, Alam MM, et al
    High prevalence of G3 rotavirus in hospitalized children in Rawalpindi, Pakistan during 2014.
    PLoS One. 2018;13:e0195947.
    PubMed     Abstract available


  878. LI S, Dou X, Gao R, Ge X, et al
    A remark on copy number variation detection methods.
    PLoS One. 2018;13:e0196226.
    PubMed     Abstract available


  879. SILVA AC, Souza AF
    Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America.
    PLoS One. 2018;13:e0196130.
    PubMed     Abstract available


  880. MA Y, Gu L, Yang L, Sun C, et al
    Identifying artificial selection signals in the chicken genome.
    PLoS One. 2018;13:e0196215.
    PubMed     Abstract available


  881. MENDES CB, Norenburg JL, Solferini VN, Andrade SCS, et al
    Hidden diversity: Phylogeography of genus Ototyphlonemertes Diesing, 1863 (Ototyphlonemertidae: Hoplonemertea) reveals cryptic species and high diversity in Chilean populations.
    PLoS One. 2018;13:e0195833.
    PubMed     Abstract available


  882. RODGER YS, Greenbaum G, Silver M, Bar-David S, et al
    Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species' global distribution: Combining classical population genetics and network analyses.
    PLoS One. 2018;13:e0194901.
    PubMed     Abstract available


  883. GHORBANI A, Izadpanah K, Dietzgen RG
    Changes in maize transcriptome in response to maize Iranian mosaic virus infection.
    PLoS One. 2018;13:e0194592.
    PubMed     Abstract available


  884. URRESTARAZU J, Errea P, Miranda C, Santesteban LG, et al
    Genetic diversity of Spanish Prunus domestica L. germplasm reveals a complex genetic structure underlying.
    PLoS One. 2018;13:e0195591.
    PubMed     Abstract available


  885. KHAN G, Ribeiro PM, Bonatelli IAS, Perez MF, et al
    Weak population structure and no genetic erosion in Pilosocereus aureispinus: A microendemic and threatened cactus species from eastern Brazil.
    PLoS One. 2018;13:e0195475.
    PubMed     Abstract available


  886. HOLM M, Saraswat M, Joenvaara S, Ristimaki A, et al
    Colorectal cancer patients with different C-reactive protein levels and 5-year survival times can be differentiated with quantitative serum proteomics.
    PLoS One. 2018;13:e0195354.
    PubMed     Abstract available


  887. SKOWRON PM, Kropinski AM, Zebrowska J, Janus L, et al
    Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.
    PLoS One. 2018;13:e0195449.
    PubMed     Abstract available


  888. TANDON D, Haque MM, R S, Shaikh S, et al
    A snapshot of gut microbiota of an adult urban population from Western region of India.
    PLoS One. 2018;13:e0195643.
    PubMed     Abstract available


  889. ZENG J, Garrick D, Dekkers J, Fernando R, et al
    A nested mixture model for genomic prediction using whole-genome SNP genotypes.
    PLoS One. 2018;13:e0194683.
    PubMed     Abstract available


  890. GLASSET B, Herbin S, Granier SA, Cavalie L, et al
    Bacillus cereus, a serious cause of nosocomial infections: Epidemiologic and genetic survey.
    PLoS One. 2018;13:e0194346.
    PubMed     Abstract available


  891. TSURU M, Ono A, Umeyama H, Takeuchi M, et al
    Ubiquitin-dependent proteolysis of CXCL7 leads to posterior longitudinal ligament ossification.
    PLoS One. 2018;13:e0196204.
    PubMed     Abstract available


  892. RAHMAN F, Hassan M, Rosli R, Almousally I, et al
    Evolutionary and genomic analysis of the caleosin/peroxygenase (CLO/PXG) gene/protein families in the Viridiplantae.
    PLoS One. 2018;13:e0196669.
    PubMed     Abstract available


  893. RYSKALIYEVA A, Henry C, Miranda G, Faye B, et al
    Combining different proteomic approaches to resolve complexity of the milk protein fraction of dromedary, Bactrian camels and hybrids, from different regions of Kazakhstan.
    PLoS One. 2018;13:e0197026.
    PubMed     Abstract available


  894. NEUBAUER PR, Widmann C, Wibberg D, Schroder L, et al
    A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
    PLoS One. 2018;13:e0196797.
    PubMed     Abstract available


  895. FISCHER L, Rappsilber J
    False discovery rate estimation and heterobifunctional cross-linkers.
    PLoS One. 2018;13:e0196672.
    PubMed     Abstract available


  896. MIAO YT, Deng Y, Jia HK, Liu YD, et al
    Proteomic analysis of watery saliva secreted by white-backed planthopper, Sogatella furcifera.
    PLoS One. 2018;13:e0193831.
    PubMed     Abstract available


  897. BENOIT JB, Frank DN, Bessesen MT
    Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.
    PLoS One. 2018;13:e0195860.
    PubMed     Abstract available


  898. HEBERLING JM, Mason NWH
    Are endemics functionally distinct? Leaf traits of native and exotic woody species in a New Zealand forest.
    PLoS One. 2018;13:e0196746.
    PubMed     Abstract available


  899. KLANGNURAK W, Fukuyo T, Rezanujjaman MD, Seki M, et al
    Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish.
    PLoS One. 2018;13:e0196544.
    PubMed     Abstract available


  900. KOSTRIKIS LG, Hezka J, Stylianou DC, Kostaki E, et al
    HIV-1 transmission networks across Cyprus (2010-2012).
    PLoS One. 2018;13:e0195660.
    PubMed     Abstract available


  901. PUENTE C, Abian-Vicen J, Del Coso J, Lara B, et al
    The CYP1A2 -163C>A polymorphism does not alter the effects of caffeine on basketball performance.
    PLoS One. 2018;13:e0195943.
    PubMed     Abstract available


  902. RAINE A, Liljedahl U, Nordlund J
    Data quality of whole genome bisulfite sequencing on Illumina platforms.
    PLoS One. 2018;13:e0195972.
    PubMed     Abstract available


  903. MARTINS MP, Gomes EV, Sanches PR, Pedersoli WR, et al
    mus-52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability.
    PLoS One. 2018;13:e0195871.
    PubMed     Abstract available


  904. BETIKU OC, Yeoman CJ, Gaylord TG, Americus B, et al
    Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout.
    PLoS One. 2018;13:e0195967.
    PubMed     Abstract available


  905. MOHAMED RAMLI N, Giatsis C, Md Yusoff F, Verreth J, et al
    Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation.
    PLoS One. 2018;13:e0195862.
    PubMed     Abstract available


  906. RIVERA SF, Vasselon V, Ballorain K, Carpentier A, et al
    DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior.
    PLoS One. 2018;13:e0195770.
    PubMed     Abstract available


  907. GOG JR, Lever AML, Skittrall JP
    A new method for detecting signal regions in ordered sequences of real numbers, and application to viral genomic data.
    PLoS One. 2018;13:e0195763.
    PubMed     Abstract available


  908. DOLMATOV IY, Afanasyev SV, Boyko AV
    Molecular mechanisms of fission in echinoderms: Transcriptome analysis.
    PLoS One. 2018;13:e0195836.
    PubMed     Abstract available


  909. PAQUETTE SJ, Stanford K, Thomas J, Reuter T, et al
    Quantitative surveillance of shiga toxins 1 and 2, Escherichia coli O178 and O157 in feces of western-Canadian slaughter cattle enumerated by droplet digital PCR with a focus on seasonality and slaughterhouse location.
    PLoS One. 2018;13:e0195880.
    PubMed     Abstract available


  910. TRAMUTO F, Maida CM, Pojero F, Colomba GME, et al
    Case-based surveillance of measles in Sicily during 2012-2017: The changing molecular epidemiology and implications for vaccine strategies.
    PLoS One. 2018;13:e0195256.
    PubMed     Abstract available


  911. SPITSYN VM, Kondakov AV, Bolotov NI, Thi Pham N, et al
    DNA barcoding unravels contrasting evolutionary history of two widespread Asian tiger moth species during the Late Pleistocene.
    PLoS One. 2018;13:e0194200.
    PubMed     Abstract available


  912. BRINKMAN NE, Villegas EN, Garland JL, Keely SP, et al
    Reducing inherent biases introduced during DNA viral metagenome analyses of municipal wastewater.
    PLoS One. 2018;13:e0195350.
    PubMed     Abstract available


  913. MENOTTA M, Orazi S, Gioacchini AM, Spapperi C, et al
    Proteomics and transcriptomics analyses of ataxia telangiectasia cells treated with Dexamethasone.
    PLoS One. 2018;13:e0195388.
    PubMed     Abstract available


  914. CASTILLO H, Li X, Schilkey F, Smith GB, et al
    Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation.
    PLoS One. 2018;13:e0196472.
    PubMed     Abstract available


  915. WILLMANN C, Mata X, Hanghoej K, Tonasso L, et al
    Oral health status in historic population: Macroscopic and metagenomic evidence.
    PLoS One. 2018;13:e0196482.
    PubMed     Abstract available


  916. DEPRA GC, Graca WJD, Pavanelli CS, Avelino GS, et al
    Molecular phylogeny of Planaltina Bohlke (Characidae: Stevardiinae) and comments on the definition and geographic distribution of the genus, with description of a new species.
    PLoS One. 2018;13:e0196291.
    PubMed     Abstract available


  917. ILIE DE, Kusza S, Sauer M, Gavojdian D, et al
    Genetic characterization of indigenous goat breeds in Romania and Hungary with a special focus on genetic resistance to mastitis and gastrointestinal parasitism based on 40 SNPs.
    PLoS One. 2018;13:e0197051.
    PubMed     Abstract available


  918. MOYANO E, Martinez-Rivas FJ, Blanco-Portales R, Molina-Hidalgo FJ, et al
    Genome-wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria x ananassa fruits.
    PLoS One. 2018;13:e0196953.
    PubMed     Abstract available


  919. YU Z, Boehm CR, Hibberd JM, Abell C, et al
    Droplet-based microfluidic analysis and screening of single plant cells.
    PLoS One. 2018;13:e0196810.
    PubMed     Abstract available


  920. ZHANG T, Xu J, Deng S, Zhou F, et al
    Core signaling pathways in ovarian cancer stem cell revealed by integrative analysis of multi-marker genomics data.
    PLoS One. 2018;13:e0196351.
    PubMed     Abstract available


  921. DELEYE L, Gansemans Y, De Coninck D, Van Nieuwerburgh F, et al
    Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods.
    PLoS One. 2018;13:e0196334.
    PubMed     Abstract available


  922. SELEPE MM, Ceccobelli S, Lasagna E, Kunene NW, et al
    Genetic structure of South African Nguni (Zulu) sheep populations reveals admixture with exotic breeds.
    PLoS One. 2018;13:e0196276.
    PubMed     Abstract available


  923. DHARANIPRAGADA P, Vogeti S, Parekh N
    iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
    PLoS One. 2018;13:e0195334.
    PubMed     Abstract available


  924. LEMES RB, Nunes K, Carnavalli JEP, Kimura L, et al
    Inbreeding estimates in human populations: Applying new approaches to an admixed Brazilian isolate.
    PLoS One. 2018;13:e0196360.
    PubMed     Abstract available


  925. FREITAS AC, Hill JE
    Bifidobacteria isolated from vaginal and gut microbiomes are indistinguishable by comparative genomics.
    PLoS One. 2018;13:e0196290.
    PubMed     Abstract available


  926. ZHOU S, Zhang J, Ma F, Tang C, et al
    Investigation of lignocellulolytic enzymes during different growth phases of Ganoderma lucidum strain G0119 using genomic, transcriptomic and secretomic analyses.
    PLoS One. 2018;13:e0198404.
    PubMed     Abstract available


  927. YANG L, Gao Q, Dai J, Yuan G, et al
    Comparative transcriptome analysis of silkworm, Bombyx mori colleterial gland suggests their functional role in mucous secretion.
    PLoS One. 2018;13:e0198077.
    PubMed     Abstract available


  928. OSAWA M
    A repetitive mutation and selection system for bacterial evolution to increase the specific affinity to pancreatic cancer cells.
    PLoS One. 2018;13:e0198157.
    PubMed     Abstract available


  929. PETERSEN DR, Saba LM, Sayin VI, Papagiannakopoulos T, et al
    Elevated Nrf-2 responses are insufficient to mitigate protein carbonylation in hepatospecific PTEN deletion mice.
    PLoS One. 2018;13:e0198139.
    PubMed     Abstract available


  930. ROOIJAKKERS BJM, Ikonen MS, Linder MB
    Fungal-type carbohydrate binding modules from the coccolithophore Emiliania huxleyi show binding affinity to cellulose and chitin.
    PLoS One. 2018;13:e0197875.
    PubMed     Abstract available


  931. SMITH SA, Brown JW, Walker JF
    So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.
    PLoS One. 2018;13:e0197433.
    PubMed     Abstract available


  932. WONG EHC, Dong YY, Coray M, Cortada M, et al
    Inner ear exosomes and their potential use as biomarkers.
    PLoS One. 2018;13:e0198029.
    PubMed     Abstract available


  933. FUENTES A, Braswell WE, Ruiz-Arce R, Racelis A, et al
    Genetic variation and population structure of Diaphorina citri using cytochrome oxidase I sequencing.
    PLoS One. 2018;13:e0198399.
    PubMed     Abstract available


  934. HARDISON DR, Holland WC, Darius HT, Chinain M, et al
    Investigation of ciguatoxins in invasive lionfish from the greater caribbean region: Implications for fishery development.
    PLoS One. 2018;13:e0198358.
    PubMed     Abstract available


  935. FLATAU L, Reitt M, Duttge G, Lenk C, et al
    Genomic information and a person's right not to know: A closer look at variations in hypothetical informational preferences in a German sample.
    PLoS One. 2018;13:e0198249.
    PubMed     Abstract available


  936. YOSHINO H, Yamaji F, Ohsawa TA
    Genetic structure and dispersal patterns in Limnoria nagatai (Limnoriidae, Isopoda) dwelling in non-buoyant kelps, Eisenia bicyclis and E. arborea, in Japan.
    PLoS One. 2018;13:e0198451.
    PubMed     Abstract available


  937. ZHANG H, Kang H, Su C, Qi Y, et al
    Genome-wide identification and expression profile analysis of the NAC transcription factor family during abiotic and biotic stress in woodland strawberry.
    PLoS One. 2018;13:e0197892.
    PubMed     Abstract available


  938. KUWABARA Y, Katayama A, Kurihara S, Orimo H, et al
    Immunoproteomic identification of anti-C9 autoimmune antibody in patients with seronegative obstetric antiphospholipid syndrome.
    PLoS One. 2018;13:e0198472.
    PubMed     Abstract available


  939. TORNER K, Nakanishi T, Matsuura T, Kato Y, et al
    Genomic integration and ligand-dependent activation of the human estrogen receptor alpha in the crustacean Daphnia magna.
    PLoS One. 2018;13:e0198023.
    PubMed     Abstract available


  940. DIAZ A, Gerard K, Gonzalez-Wevar C, Maturana C, et al
    Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: The role of the last glaciation.
    PLoS One. 2018;13:e0197611.
    PubMed     Abstract available


  941. WANG X, Li L, Wei X, Wang Y, et al
    Proteomic analysis of the response of Trichinella spiralis muscle larvae to exogenous nitric oxide.
    PLoS One. 2018;13:e0198205.
    PubMed     Abstract available


  942. WINANS GA, Allen MB, Baker J, Lesko E, et al
    Dam trout: Genetic variability in Oncorhynchus mykiss above and below barriers in three Columbia River systems prior to restoring migrational access.
    PLoS One. 2018;13:e0197571.
    PubMed     Abstract available


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    Decreasing prevalence of Hepatitis B and absence of Hepatitis C Virus infection in the Warao indigenous population of Venezuela.
    PLoS One. 2018;13:e0197662.
    PubMed     Abstract available


  944. HOLZ PH, Lumsden LF, Druce J, Legione AR, et al
    Virus survey in populations of two subspecies of bent-winged bats (Miniopterus orianae bassanii and oceanensis) in south-eastern Australia reveals a high prevalence of diverse herpesviruses.
    PLoS One. 2018;13:e0197625.
    PubMed     Abstract available


  945. SILVA-BRANDAO KL, Peruchi A, Seraphim N, Murad NF, et al
    Loci under selection and markers associated with host plant and host-related strains shape the genetic structure of Brazilian populations of Spodoptera frugiperda (Lepidoptera, Noctuidae).
    PLoS One. 2018;13:e0197378.
    PubMed     Abstract available


  946. QIU L, Zhao C, Wang P, Fan S, et al
    Genomic structure, expression, and functional characterization of checkpoint kinase 1 from Penaeus monodon.
    PLoS One. 2018;13:e0198036.
    PubMed     Abstract available


  947. GAO B, Peng C, Chen Q, Zhang J, et al
    Mitochondrial genome sequencing of a vermivorous cone snail Conus quercinus supports the correlative analysis between phylogenetic relationships and dietary types of Conus species.
    PLoS One. 2018;13:e0193053.
    PubMed     Abstract available


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    Bayesian variable selection with graphical structure learning: Applications in integrative genomics.
    PLoS One. 2018;13:e0195070.
    PubMed     Abstract available


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    Hypobaric hypoxia induced renal damage is mediated by altering redox pathway.
    PLoS One. 2018;13:e0195701.
    PubMed     Abstract available


  950. LANGEN B, Rudqvist N, Spetz J, Helou K, et al
    Deconvolution of expression microarray data reveals 131I-induced responses otherwise undetected in thyroid tissue.
    PLoS One. 2018;13:e0197911.
    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice.
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    Multigene phylogeny supports diversification of four-eyed fishes and one-sided livebearers (Cyprinodontiformes: Anablepidae) related to major South American geological events.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    Clipperton Atoll as a model to study small marine populations: Endemism and the genomic consequences of small population size.
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    Identification of induced mutations in hexaploid wheat genome using exome capture assay.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    High-resolution diffusion pattern of human infections by Salmonella enterica serovar Napoli in Northern Italy explained through phylogeography.
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    Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata.
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    But they move! Vicariance and dispersal in southern South America: Using two methods to reconstruct the biogeography of a clade of lizards endemic to South America.
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    PubMed     Abstract available


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    Differential transcriptome analysis supports Rhodnius montenegrensis and Rhodnius robustus (Hemiptera, Reduviidae, Triatominae) as distinct species.
    PLoS One. 2017;12:e0174997.
    PubMed     Abstract available


  1160. PASSAMANI LZ, Barbosa RR, Reis RS, Heringer AS, et al
    Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots.
    PLoS One. 2017;12:e0176076.
    PubMed     Abstract available


  1161. DAGAMAC NHA, Rojas C, Novozhilov YK, Moreno GH, et al
    Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes).
    PLoS One. 2017;12:e0174825.
    PubMed     Abstract available


  1162. BEN-LULU S, Ziv T, Weisman-Shomer P, Benhar M, et al
    Nitrosothiol-Trapping-Based Proteomic Analysis of S-Nitrosylation in Human Lung Carcinoma Cells.
    PLoS One. 2017;12:e0169862.
    PubMed     Abstract available


  1163. FRUZANGOHAR M, Ebrahimie E, Adelson DL
    A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data.
    PLoS One. 2017;12:e0170486.
    PubMed     Abstract available


  1164. NKUIPOU-KENFACK E, Schanstra JP, Bajwa S, Pejchinovski M, et al
    The use of urinary proteomics in the assessment of suitability of mouse models for ageing.
    PLoS One. 2017;12:e0166875.
    PubMed     Abstract available


  1165. KIRICHENKO N, Triberti P, Ohshima I, Haran J, et al
    From east to west across the Palearctic: Phylogeography of the invasive lime leaf miner Phyllonorycter issikii (Lepidoptera: Gracillariidae) and discovery of a putative new cryptic species in East Asia.
    PLoS One. 2017;12:e0171104.
    PubMed     Abstract available


  1166. PEREZ T, Fernandez M, Hammer SE, Dominguez A, et al
    Multilocus Intron Trees Reveal Extensive Male-Biased Homogenization of Ancient Populations of Chamois (Rupicapra spp.) across Europe during Late Pleistocene.
    PLoS One. 2017;12:e0170392.
    PubMed     Abstract available


  1167. TRAYKOVA D, Schneider B, Chojkier M, Buck M, et al
    Blood Microbiome Quantity and the Hyperdynamic Circulation in Decompensated Cirrhotic Patients.
    PLoS One. 2017;12:e0169310.
    PubMed     Abstract available


  1168. SAGULENKO E, Nouwens A, Webb RI, Green K, et al
    Nuclear Pore-Like Structures in a Compartmentalized Bacterium.
    PLoS One. 2017;12:e0169432.
    PubMed     Abstract available


  1169. ANGULO DF, Amarilla LD, Anton AM, Sosa V, et al
    Colonization in North American Arid Lands: The Journey of Agarito (Berberis trifoliolata) Revealed by Multilocus Molecular Data and Packrat Midden Fossil Remains.
    PLoS One. 2017;12:e0168933.
    PubMed     Abstract available


  1170. PORTE B, Chatelain C, Hardouin J, Derambure C, et al
    Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice.
    PLoS One. 2017;12:e0171048.
    PubMed     Abstract available


  1171. NANDAN D, Thomas SA, Nguyen A, Moon KM, et al
    Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture.
    PLoS One. 2017;12:e0170068.
    PubMed     Abstract available


  1172. MSALYA G, Kim ES, Laisser EL, Kipanyula MJ, et al
    Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses.
    PLoS One. 2017;12:e0171088.
    PubMed     Abstract available


  1173. VOROS J, Marton O, Schmidt BR, Gal JT, et al
    Surveying Europe's Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA.
    PLoS One. 2017;12:e0170945.
    PubMed     Abstract available


  1174. DOS SANTOS MD, Kretschmer R, Frankl-Vilches C, Bakker A, et al
    Comparative Cytogenetics between Two Important Songbird, Models: The Zebra Finch and the Canary.
    PLoS One. 2017;12:e0170997.
    PubMed     Abstract available


  1175. O'FARRELL AC, Evans R, Silvola JM, Miller IS, et al
    A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate.
    PLoS One. 2017;12:e0169964.
    PubMed     Abstract available


  1176. LUND KT, Riaz S, Walker MA
    Population Structure, Diversity and Reproductive Mode of the Grape Phylloxera (Daktulosphaira vitifoliae) across Its Native Range.
    PLoS One. 2017;12:e0170678.
    PubMed     Abstract available


  1177. YOTOVA I, Hsu E, Do C, Gaba A, et al
    Epigenetic Alterations Affecting Transcription Factors and Signaling Pathways in Stromal Cells of Endometriosis.
    PLoS One. 2017;12:e0170859.
    PubMed     Abstract available


  1178. FU Y, Xu X, Xue J, Duan W, et al
    Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis.
    PLoS One. 2017;12:e0170712.
    PubMed     Abstract available


  1179. ESCORIZA D, Ben Hassine J
    Diversity of Guilds of Amphibian Larvae in North-Western Africa.
    PLoS One. 2017;12:e0170763.
    PubMed     Abstract available


  1180. TSURUTA SI, Ebina M, Kobayashi M, Takahashi W, et al
    Complete Chloroplast Genomes of Erianthus arundinaceus and Miscanthus sinensis: Comparative Genomics and Evolution of the Saccharum Complex.
    PLoS One. 2017;12:e0169992.
    PubMed     Abstract available


  1181. CHEN Z, Li Z, Zhuang R, Yuan Y, et al
    Adaptive Estimation of Personalized Maximum Tolerated Dose in Cancer Phase I Clinical Trials Based on All Toxicities and Individual Genomic Profile.
    PLoS One. 2017;12:e0170187.
    PubMed     Abstract available


  1182. CHA S, Srinivasan S, Jang JH, Lee D, et al
    Metagenomic Analysis of Airborne Bacterial Community and Diversity in Seoul, Korea, during December 2014, Asian Dust Event.
    PLoS One. 2017;12:e0170693.
    PubMed     Abstract available


  1183. HWANG J, Park SY, Park M, Lee S, et al
    Seasonal Dynamics and Metagenomic Characterization of Marine Viruses in Goseong Bay, Korea.
    PLoS One. 2017;12:e0169841.
    PubMed     Abstract available


  1184. NIU R, Liu Y, Zhang Y, Zhang Y, et al
    iTRAQ-Based Proteomics Reveals Novel Biomarkers for Idiopathic Pulmonary Fibrosis.
    PLoS One. 2017;12:e0170741.
    PubMed     Abstract available


  1185. HELWA I, Cai J, Drewry MD, Zimmerman A, et al
    A Comparative Study of Serum Exosome Isolation Using Differential Ultracentrifugation and Three Commercial Reagents.
    PLoS One. 2017;12:e0170628.
    PubMed     Abstract available


  1186. DE VRIES PS, Sabater-Lleal M, Chasman DI, Trompet S, et al
    Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.
    PLoS One. 2017;12:e0167742.
    PubMed     Abstract available


  1187. HALLER T, Leitsalu L, Fischer K, Nuotio ML, et al
    MixFit: Methodology for Computing Ancestry-Related Genetic Scores at the Individual Level and Its Application to the Estonian and Finnish Population Studies.
    PLoS One. 2017;12:e0170325.
    PubMed     Abstract available


  1188. SIRIPHAP A, Leekitcharoenphon P, Kaas RS, Theethakaew C, et al
    Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.
    PLoS One. 2017;12:e0169324.
    PubMed     Abstract available


  1189. CHERIFI YA, Gaouar SB, Guastamacchia R, El-Bahrawy KA, et al
    Weak Genetic Structure in Northern African Dromedary Camels Reflects Their Unique Evolutionary History.
    PLoS One. 2017;12:e0168672.
    PubMed     Abstract available


  1190. GONZALEZ-WEVAR CA, Nakano T, Palma A, Poulin E, et al
    Biogeography in Cellana (Patellogastropoda, Nacellidae) with Special Emphasis on the Relationships of Southern Hemisphere Oceanic Island Species.
    PLoS One. 2017;12:e0170103.
    PubMed     Abstract available


  1191. STEBNER F, Szadziewski R, Singh H, Gunkel S, et al
    Biting Midges (Diptera: Ceratopogonidae) from Cambay Amber Indicate that the Eocene Fauna of the Indian Subcontinent Was Not Isolated.
    PLoS One. 2017;12:e0169144.
    PubMed     Abstract available


  1192. YE X, Liu H, Jin Y, Guo M, et al
    Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection.
    PLoS One. 2017;12:e0169598.
    PubMed     Abstract available


  1193. MANICKAVELU A, Hattori T, Yamaoka S, Yoshimura K, et al
    Genetic Nature of Elemental Contents in Wheat Grains and Its Genomic Prediction: Toward the Effective Use of Wheat Landraces from Afghanistan.
    PLoS One. 2017;12:e0169416.
    PubMed     Abstract available


  1194. PRIYAMVADA H, Akila M, Singh RK, Ravikrishna R, et al
    Terrestrial Macrofungal Diversity from the Tropical Dry Evergreen Biome of Southern India and Its Potential Role in Aerobiology.
    PLoS One. 2017;12:e0169333.
    PubMed     Abstract available


  1195. AGULLO L, Romero-Silva MJ, Domenech M, Seeger M, et al
    p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.
    PLoS One. 2017;12:e0169544.
    PubMed     Abstract available


  1196. HATOUM D, Yagoub D, Ahadi A, Nassif NT, et al
    Annexin/S100A Protein Family Regulation through p14ARF-p53 Activation: A Role in Cell Survival and Predicting Treatment Outcomes in Breast Cancer.
    PLoS One. 2017;12:e0169925.
    PubMed     Abstract available


  1197. WEN HB, Cao ZM, Hua D, Xu P, et al
    The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae).
    PLoS One. 2017;12:e0169749.
    PubMed     Abstract available


  1198. VIRK RK, Gunalan V, Lee HK, Inoue M, et al
    Molecular Evidence of Transmission of Influenza A/H1N1 2009 on a University Campus.
    PLoS One. 2017;12:e0168596.
    PubMed     Abstract available


  1199. STROJAN K, Leonardi A, Bregar VB, Krizaj I, et al
    Dispersion of Nanoparticles in Different Media Importantly Determines the Composition of Their Protein Corona.
    PLoS One. 2017;12:e0169552.
    PubMed     Abstract available


  1200. SIEGWALD L, Touzet H, Lemoine Y, Hot D, et al
    Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.
    PLoS One. 2017;12:e0169563.
    PubMed     Abstract available


  1201. SCHNEIDER A, Matkovich SJ, Victoria B, Spinel L, et al
    Changes of Ovarian microRNA Profile in Long-Living Ames Dwarf Mice during Aging.
    PLoS One. 2017;12:e0169213.
    PubMed     Abstract available


  1202. ASOR E, Stav MY, Simon E, Fahoum I, et al
    Risk for molecular contamination of tissue samples evaluated for targeted anti-cancer therapy.
    PLoS One. 2017;12:e0173760.
    PubMed     Abstract available


  1203. KNITLOVA M, Horacek I
    Late Pleistocene-Holocene paleobiogeography of the genus Apodemus in Central Europe.
    PLoS One. 2017;12:e0173668.
    PubMed     Abstract available


  1204. VARDI O, Shamir I, Javasky E, Goren A, et al
    Biases in the SMART-DNA library preparation method associated with genomic poly dA/dT sequences.
    PLoS One. 2017;12:e0172769.
    PubMed     Abstract available


  1205. FORTI LR, Lingnau R, Encarnacao LC, Bertoluci J, et al
    Can treefrog phylogeographical clades and species' phylogenetic topologies be recovered by bioacoustical analyses?
    PLoS One. 2017;12:e0169911.
    PubMed     Abstract available


  1206. PELLETIER A, Obbard ME, Harnden M, McConnell S, et al
    Determining causes of genetic isolation in a large carnivore (Ursus americanus) population to direct contemporary conservation measures.
    PLoS One. 2017;12:e0172319.
    PubMed     Abstract available


  1207. SHEVCHENKO A, Yang Y, Knaust A, Verbavatz JM, et al
    Open sesame: Identification of sesame oil and oil soot ink in organic deposits of Tang Dynasty lamps from Astana necropolis in China.
    PLoS One. 2017;12:e0158636.
    PubMed     Abstract available


  1208. VEGA-CABRERA LA, Guerrero A, Rodriguez-Mejia JL, Tabche ML, et al
    Analysis of Spo0M function in Bacillus subtilis.
    PLoS One. 2017;12:e0172737.
    PubMed     Abstract available


  1209. GONZALEZ AV, Santelices B
    Frequency of chimerism in populations of the kelp Lessonia spicata in central Chile.
    PLoS One. 2017;12:e0169182.
    PubMed     Abstract available


  1210. UR REHMAN H, Azam N, Yao J, Benso A, et al
    A three-way approach for protein function classification.
    PLoS One. 2017;12:e0171702.
    PubMed     Abstract available


  1211. KUZNIAR A, Laffeber C, Eppink B, Bezstarosti K, et al
    Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields.
    PLoS One. 2017;12:e0170762.
    PubMed     Abstract available


  1212. CHO YE, Im EJ, Moon PG, Mezey E, et al
    Increased liver-specific proteins in circulating extracellular vesicles as potential biomarkers for drug- and alcohol-induced liver injury.
    PLoS One. 2017;12:e0172463.
    PubMed     Abstract available


  1213. IJAZ UZ, Quince C, Hanske L, Loman N, et al
    The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
    PLoS One. 2017;12:e0172605.
    PubMed     Abstract available


  1214. LI S, Li D, Zhao X, Wang Y, et al
    A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken.
    PLoS One. 2017;12:e0172211.
    PubMed     Abstract available


  1215. QIN L, Liu X, Liu S, Liu Y, et al
    Differentially expressed proteins underlying childhood cortical dysplasia with epilepsy identified by iTRAQ proteomic profiling.
    PLoS One. 2017;12:e0172214.
    PubMed     Abstract available


  1216. DUAN X, Wang K, Su S, Tian R, et al
    De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae).
    PLoS One. 2017;12:e0172513.
    PubMed     Abstract available


  1217. LU X, Kang X, Liu Y, Cui Z, et al
    HIV-1 molecular epidemiology among newly diagnosed HIV-1 individuals in Hebei, a low HIV prevalence province in China.
    PLoS One. 2017;12:e0171481.
    PubMed     Abstract available


  1218. TAYABALI AF, Coleman G, Crosthwait J, Nguyen KC, et al
    Composition and pathogenic potential of a microbial bioremediation product used for crude oil degradation.
    PLoS One. 2017;12:e0171911.
    PubMed     Abstract available


  1219. LIMA DF, de Lima LI, Rocha JA, de Andrade IM, et al
    Seasonal change in main alkaloids of jaborandi (Pilocarpus microphyllus Stapf ex Wardleworth), an economically important species from the Brazilian flora.
    PLoS One. 2017;12:e0170281.
    PubMed     Abstract available


  1220. WAIHO K, Fazhan H, Shahreza MS, Moh JH, et al
    Transcriptome Analysis and Differential Gene Expression on the Testis of Orange Mud Crab, Scylla olivacea, during Sexual Maturation.
    PLoS One. 2017;12:e0171095.
    PubMed     Abstract available


  1221. ZHANG X, Mu Y, Mu P, Ao J, et al
    Transcriptome Analysis Reveals Comprehensive Insights into the Early Immune Response of Large Yellow Croaker (Larimichthys crocea) Induced by Trivalent Bacterial Vaccine.
    PLoS One. 2017;12:e0170958.
    PubMed     Abstract available


  1222. N'DIAYE A, Haile JK, Cory AT, Clarke FR, et al
    Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.
    PLoS One. 2017;12:e0170941.
    PubMed     Abstract available


  1223. ANGELONE-ALASAAD S, Biebach I, Perez JM, Soriguer RC, et al
    Molecular Analyses Reveal Unexpected Genetic Structure in Iberian Ibex Populations.
    PLoS One. 2017;12:e0170827.
    PubMed     Abstract available


  1224. SOLLANEK KJ, Burniston JG, Kavazis AN, Morton AB, et al
    Global Proteome Changes in the Rat Diaphragm Induced by Endurance Exercise Training.
    PLoS One. 2017;12:e0171007.
    PubMed     Abstract available


  1225. HUANG X, Zang X, Wu F, Jin Y, et al
    Transcriptome Sequencing of Gracilariopsis lemaneiformis to Analyze the Genes Related to Optically Active Phycoerythrin Synthesis.
    PLoS One. 2017;12:e0170855.
    PubMed     Abstract available


  1226. ZHANG D, Xia X, Wang X, Zhang P, et al
    PGRMC1 Is a Novel Potential Tumor Biomarker of Human Renal Cell Carcinoma Based on Quantitative Proteomic and Integrative Biological Assessments.
    PLoS One. 2017;12:e0170453.
    PubMed     Abstract available


  1227. PANTOJA-MELENDEZ CA, Miranda-Duarte A, Roque-Ramirez B, Zenteno JC, et al
    Epidemiological and Molecular Characterization of a Mexican Population Isolate with High Prevalence of Limb-Girdle Muscular Dystrophy Type 2A Due to a Novel Calpain-3 Mutation.
    PLoS One. 2017;12:e0170280.
    PubMed     Abstract available


  1228. RODRIGUES RT, Chizzotti ML, Vital CE, Baracat-Pereira MC, et al
    Differences in Beef Quality between Angus (Bos taurus taurus) and Nellore (Bos taurus indicus) Cattle through a Proteomic and Phosphoproteomic Approach.
    PLoS One. 2017;12:e0170294.
    PubMed     Abstract available


  1229. CHO IT, Lim Y, Golden JA, Cho G, et al
    Aristaless Related Homeobox (ARX) Interacts with beta-Catenin, BCL9, and P300 to Regulate Canonical Wnt Signaling.
    PLoS One. 2017;12:e0170282.
    PubMed     Abstract available


  1230. HJELMSO MH, Hellmer M, Fernandez-Cassi X, Timoneda N, et al
    Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing.
    PLoS One. 2017;12:e0170199.
    PubMed     Abstract available


  1231. HE C, Fu J, Zhang J, Li Y, et al
    A Gene-Oriented Haplotype Comparison Reveals Recently Selected Genomic Regions in Temperate and Tropical Maize Germplasm.
    PLoS One. 2017;12:e0169806.
    PubMed     Abstract available


  1232. VOLLMERS J, Wiegand S, Kaster AK
    Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!
    PLoS One. 2017;12:e0169662.
    PubMed     Abstract available


  1233. VESTY A, Biswas K, Taylor MW, Gear K, et al
    Evaluating the Impact of DNA Extraction Method on the Representation of Human Oral Bacterial and Fungal Communities.
    PLoS One. 2017;12:e0169877.
    PubMed     Abstract available


  1234. YANG Y, Lian S, Meng L, Qu L, et al
    Antibody Array Revealed PRL-3 Affects Protein Phosphorylation and Cytokine Secretion.
    PLoS One. 2017;12:e0169665.
    PubMed     Abstract available


  1235. GELIN P, Fauvelot C, Mehn V, Bureau S, et al
    Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type beta in Reunion Island, South Western Indian Ocean.
    PLoS One. 2017;12:e0169692.
    PubMed     Abstract available


  1236. GUARINO MP, Altomare A, Barera S, Locato V, et al
    Effect of Inulin on Proteome Changes Induced by Pathogenic Lipopolysaccharide in Human Colon.
    PLoS One. 2017;12:e0169481.
    PubMed     Abstract available


  1237. BIAZZI E, Nazzicari N, Pecetti L, Brummer EC, et al
    Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits.
    PLoS One. 2017;12:e0169234.
    PubMed     Abstract available


  1238. ORTIZ ME, Bleckwedel J, Fadda S, Picariello G, et al
    Global Analysis of Mannitol 2-Dehydrogenase in Lactobacillus reuteri CRL 1101 during Mannitol Production through Enzymatic, Genetic and Proteomic Approaches.
    PLoS One. 2017;12:e0169441.
    PubMed     Abstract available


  1239. HAN Z, Kautto L, Nevalainen H
    Secretion of Proteases by an Opportunistic Fungal Pathogen Scedosporium aurantiacum.
    PLoS One. 2017;12:e0169403.
    PubMed     Abstract available


  1240. HOFF ML, Fabrizius A, Czech-Damal NU, Folkow LP, et al
    Transcriptome Analysis Identifies Key Metabolic Changes in the Hooded Seal (Cystophora cristata) Brain in Response to Hypoxia and Reoxygenation.
    PLoS One. 2017;12:e0169366.
    PubMed     Abstract available


  1241. KUO HW, Shih CL, Tsung JH, Liu SW, et al
    Pharmacogenomics study on cadherin 2 network with regard to HIV infection and methadone treatment outcome.
    PLoS One. 2017;12:e0174647.
    PubMed     Abstract available


  1242. QIN Y, Djabou AS, An F, Li K, et al
    Proteomic analysis of injured storage roots in cassava (Manihot esculenta Crantz) under postharvest physiological deterioration.
    PLoS One. 2017;12:e0174238.
    PubMed     Abstract available


  1243. ARMERO A, Baudouin L, Bocs S, This D, et al
    Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.
    PLoS One. 2017;12:e0173300.
    PubMed     Abstract available


  1244. EIRIN A, Zhu XY, Puranik AS, Woollard JR, et al
    Integrated transcriptomic and proteomic analysis of the molecular cargo of extracellular vesicles derived from porcine adipose tissue-derived mesenchymal stem cells.
    PLoS One. 2017;12:e0174303.
    PubMed     Abstract available


  1245. HOLMILA R, Sklias A, Muller DC, Degli Esposti D, et al
    Targeted deep sequencing of plasma circulating cell-free DNA reveals Vimentin and Fibulin 1 as potential epigenetic biomarkers for hepatocellular carcinoma.
    PLoS One. 2017;12:e0174265.
    PubMed     Abstract available


  1246. LOWDON RF, Wang T
    Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancer.
    PLoS One. 2017;12:e0174032.
    PubMed     Abstract available


  1247. NAGA PRASAD SV, Gupta MK, Duan ZH, Surampudi VS, et al
    A unique microRNA profile in end-stage heart failure indicates alterations in specific cardiovascular signaling networks.
    PLoS One. 2017;12:e0170456.
    PubMed     Abstract available


  1248. GUAYASAMIN JM, Hutter CR, Tapia EE, Culebras J, et al
    Diversification of the rainfrog Pristimantis ornatissimus in the lowlands and Andean foothills of Ecuador.
    PLoS One. 2017;12:e0172615.
    PubMed     Abstract available


  1249. MCDOUGALL CA, Welsh AB, Gosselin T, Anderson WG, et al
    Rethinking the influence of hydroelectric development on gene flow in a long-lived fish, the Lake Sturgeon Acipenser fulvescens.
    PLoS One. 2017;12:e0174269.
    PubMed     Abstract available


  1250. GANTUZ M, Lorenzetti MA, Chabay PA, Preciado MV, et al
    A novel recombinant variant of latent membrane protein 1 from Epstein Barr virus in Argentina denotes phylogeographical association.
    PLoS One. 2017;12:e0174221.
    PubMed     Abstract available


  1251. QI H, Song K, Li C, Wang W, et al
    Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas).
    PLoS One. 2017;12:e0174007.
    PubMed     Abstract available


  1252. HATTHAKAROON C, Pharkjaksu S, Chongtrakool P, Suwannakarn K, et al
    Molecular epidemiology of cryptococcal genotype VNIc/ST5 in Siriraj Hospital, Thailand.
    PLoS One. 2017;12:e0173744.
    PubMed     Abstract available


  1253. CHI W, Gao Y, Hu Q, Guo W, et al
    Genome-wide analysis of brain and gonad transcripts reveals changes of key sex reversal-related genes expression and signaling pathways in three stages of Monopterus albus.
    PLoS One. 2017;12:e0173974.
    PubMed     Abstract available


  1254. CHEN PC, Shih CH, Chu TJ, Lee YC, et al
    Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia.
    PLoS One. 2017;12:e0173490.
    PubMed     Abstract available


  1255. HE S, Wang H, Liu R, He M, et al
    mRNA N6-methyladenosine methylation of postnatal liver development in pig.
    PLoS One. 2017;12:e0173421.
    PubMed     Abstract available


  1256. PFEIFFER W, Braun J, Burchell J, Witte CL, et al
    Whole-genome analysis of mycobacteria from birds at the San Diego Zoo.
    PLoS One. 2017;12:e0173464.
    PubMed     Abstract available


  1257. KANG Z, Zhang X, Ding S, Tang C, et al
    Transcriptomes of three species of Tipuloidea (Diptera, Tipulomorpha) and implications for phylogeny of Tipulomorpha.
    PLoS One. 2017;12:e0173207.
    PubMed     Abstract available


  1258. ZHOU T, Souzeau E, Sharma S, Landers J, et al
    Whole exome sequencing implicates eye development, the unfolded protein response and plasma membrane homeostasis in primary open-angle glaucoma.
    PLoS One. 2017;12:e0172427.
    PubMed     Abstract available


  1259. POLLEGIONI P, Woeste K, Chiocchini F, Del Lungo S, et al
    Rethinking the history of common walnut (Juglans regia L.) in Europe: Its origins and human interactions.
    PLoS One. 2017;12:e0172541.
    PubMed     Abstract available


  1260. ELDRIDGE MD, Miller EJ, Neaves LE, Zenger KR, et al
    Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii).
    PLoS One. 2017;12:e0172777.
    PubMed     Abstract available


  1261. LI R, Chen D, Wang T, Wan Y, et al
    High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba).
    PLoS One. 2017;12:e0172883.
    PubMed     Abstract available


  1262. MUNOZ S, Guerrero FD, Kellogg A, Heekin AM, et al
    Bioinformatic prediction of G protein-coupled receptor encoding sequences from the transcriptome of the foreleg, including the Haller's organ, of the cattle tick, Rhipicephalus australis.
    PLoS One. 2017;12:e0172326.
    PubMed     Abstract available


  1263. RUDQVIST N, Spetz J, Schuler E, Parris TZ, et al
    Transcriptional response to 131I exposure of rat thyroid gland.
    PLoS One. 2017;12:e0171797.
    PubMed     Abstract available


  1264. ZHU C, Pan Z, Wang H, Chang G, et al
    De novo assembly, characterization and annotation for the transcriptome of Sarcocheilichthys sinensis.
    PLoS One. 2017;12:e0171966.
    PubMed     Abstract available


  1265. RIZWAN M, Aslam M, Asghar MJ, Abbas G, et al
    Pre-breeding of lentil (Lens culinaris Medik.) for herbicide resistance through seed mutagenesis.
    PLoS One. 2017;12:e0171846.
    PubMed     Abstract available


  1266. WU B, Hu Y, Huo P, Zhang Q, et al
    Transcriptome analysis of hexaploid hulless oat in response to salinity stress.
    PLoS One. 2017;12:e0171451.
    PubMed     Abstract available


  1267. ZYCH K, Snoek BL, Elvin M, Rodriguez M, et al
    reGenotyper: Detecting mislabeled samples in genetic data.
    PLoS One. 2017;12:e0171324.
    PubMed     Abstract available


  1268. BACKMAN TW, Evans DS, Girke T
    Large-scale bioactivity analysis of the small-molecule assayed proteome.
    PLoS One. 2017;12:e0171413.
    PubMed     Abstract available


  1269. MASSAFRA V, Milona A, Vos HR, Burgering BM, et al
    Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation.
    PLoS One. 2017;12:e0171185.
    PubMed     Abstract available


  1270. OMIDVAR V, Mohorianu I, Dalmay T, Zheng Y, et al
    Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant.
    PLoS One. 2017;12:e0170715.
    PubMed     Abstract available


  1271. BAI S, Chen H, Zhu L, Liu W, et al
    Comparative study on the in vitro effects of Pseudomonas aeruginosa and seaweed alginates on human gut microbiota.
    PLoS One. 2017;12:e0171576.
    PubMed     Abstract available


  1272. YANG MQ, Li DZ, Wen J, Yi TS, et al
    Phylogeny and biogeography of the amphi-Pacific genus Aphananthe.
    PLoS One. 2017;12:e0171405.
    PubMed     Abstract available


  1273. POLANSKI A, Szczesna A, Garbulowski M, Kimmel M, et al
    Coalescence computations for large samples drawn from populations of time-varying sizes.
    PLoS One. 2017;12:e0170701.
    PubMed     Abstract available


  1274. COX MJ, Turek EM, Hennessy C, Mirza GK, et al
    Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients.
    PLoS One. 2017;12:e0170622.
    PubMed     Abstract available


  1275. VON SALTZWEDEL H, Scheu S, Schaefer I
    Genetic structure and distribution of Parisotoma notabilis (Collembola) in Europe: Cryptic diversity, split of lineages and colonization patterns.
    PLoS One. 2017;12:e0170909.
    PubMed     Abstract available


  1276. REYNAUD Y, Zheng C, Wu G, Sun Q, et al
    Bayesian population structure analysis reveals presence of phylogeographically specific sublineages within previously ill-defined T group of Mycobacterium tuberculosis.
    PLoS One. 2017;12:e0171584.
    PubMed     Abstract available


  1277. HUANG N, Wang W, Yao Y, Zhu F, et al
    The influence of different concentrations of bio-organic fertilizer on cucumber Fusarium wilt and soil microflora alterations.
    PLoS One. 2017;12:e0171490.
    PubMed     Abstract available


  1278. ZOU Z, Liu J, Yang L, Xie G, et al
    Survey of the rubber tree genome reveals a high number of cysteine protease-encoding genes homologous to Arabidopsis SAG12.
    PLoS One. 2017;12:e0171725.
    PubMed     Abstract available


  1279. VAN GOOR A, Ashwell CM, Persia ME, Rothschild MF, et al
    Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat.
    PLoS One. 2017;12:e0171414.
    PubMed     Abstract available


  1280. ZUO LH, Shang AQ, Zhang S, Yu XY, et al
    The first complete chloroplast genome sequences of Ulmus species by de novo sequencing: Genome comparative and taxonomic position analysis.
    PLoS One. 2017;12:e0171264.
    PubMed     Abstract available


  1281. LEE MY, Park C, Ha SE, Park PJ, et al
    Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels.
    PLoS One. 2017;12:e0171262.
    PubMed     Abstract available


  1282. MARTINS CO, Demarchi L, Ferreira FM, Pomerantzeff PM, et al
    Rheumatic Heart Disease and Myxomatous Degeneration: Differences and Similarities of Valve Damage Resulting from Autoimmune Reactions and Matrix Disorganization.
    PLoS One. 2017;12:e0170191.
    PubMed     Abstract available


  1283. VILA M, Hermida M, Fernandez C, Perea S, et al
    Phylogeography and Conservation Genetics of the Ibero-Balearic Three-Spined Stickleback (Gasterosteus aculeatus).
    PLoS One. 2017;12:e0170685.
    PubMed     Abstract available


  1284. EBERHARDT C, Thillai M, Parker R, Siddiqui N, et al
    Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis.
    PLoS One. 2017;12:e0170285.
    PubMed     Abstract available


  1285. WANG H, Zhao S, Gao Y, Yang J, et al
    Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa).
    PLoS One. 2017;12:e0170210.
    PubMed     Abstract available


  1286. FRAIJA-FERNANDEZ N, Fernandez M, Lehnert K, Raga JA, et al
    Long-Distance Travellers: Phylogeography of a Generalist Parasite, Pholeter gastrophilus, from Cetaceans.
    PLoS One. 2017;12:e0170184.
    PubMed     Abstract available


  1287. WOO HJ, Yu C, Reifman J
    Collective Genetic Interaction Effects and the Role of Antigen-Presenting Cells in Autoimmune Diseases.
    PLoS One. 2017;12:e0169918.
    PubMed     Abstract available


  1288. GRANT LR, O'Brien KL, Weatherholtz RC, Reid R, et al
    Norovirus and Sapovirus Epidemiology and Strain Characteristics among Navajo and Apache Infants.
    PLoS One. 2017;12:e0169491.
    PubMed     Abstract available


  1289. XI Y, Jiao W, Cao J, Jiang W, et al
    Effects of chlorogenic acid on capacity of free radicals scavenging and proteomic changes in postharvest fruit of nectarine.
    PLoS One. 2017;12:e0182494.
    PubMed     Abstract available


  1290. KUMAR S, Subbarao BL, Kumari R, Hallan V, et al
    Molecular characterization of a novel cryptic virus infecting pigeonpea plants.
    PLoS One. 2017;12:e0181829.
    PubMed     Abstract available


  1291. ANEL-LOPEZ L, Ortega-Ferrusola C, Martinez-Rodriguez C, Alvarez M, et al
    Analysis of seminal plasma from brown bear (Ursus arctos) during the breeding season: Its relationship with testosterone levels.
    PLoS One. 2017;12:e0181776.
    PubMed     Abstract available


  1292. DHARMAYANTHI AB, Terai Y, Sulandari S, Zein MS, et al
    The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.
    PLoS One. 2017;12:e0173147.
    PubMed     Abstract available


  1293. LLUVERAS-TENORIO A, Vinciguerra R, Galano E, Blaensdorf C, et al
    GC/MS and proteomics to unravel the painting history of the lost Giant Buddhas of Bamiyan (Afghanistan).
    PLoS One. 2017;12:e0172990.
    PubMed     Abstract available


  1294. RUTKOWSKI R, Zawadzka D, Suchecka E, Merta D, et al
    Conservation genetics of the capercaillie in Poland - Delineation of conservation units.
    PLoS One. 2017;12:e0174901.
    PubMed     Abstract available


  1295. EDWARDS RD, Crisp MD, Cook DH, Cook LG, et al
    Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics.
    PLoS One. 2017;12:e0174812.
    PubMed     Abstract available


  1296. SUN Y, Guo W, Wang F, Zhan C, et al
    Transcriptome analysis of Corynebacterium glutamicum in the process of recombinant protein expression in bioreactors.
    PLoS One. 2017;12:e0174824.
    PubMed     Abstract available


  1297. GUINOISEAU T, Moreau A, Hohnadel G, Ngo-Giang-Huong N, et al
    Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.
    PLoS One. 2017;12:e0174852.
    PubMed     Abstract available


  1298. PELLON A, Ramirez-Garcia A, Buldain I, Antoran A, et al
    Molecular and cellular responses of the pathogenic fungus Lomentospora prolificans to the antifungal drug voriconazole.
    PLoS One. 2017;12:e0174885.
    PubMed     Abstract available


  1299. LI Y, Urban A, Midura D, Simon HG, et al
    Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-kappaB in epicardial EMT.
    PLoS One. 2017;12:e0174563.
    PubMed     Abstract available


  1300. LI Y, Morrow J, Raby B, Tantisira K, et al
    Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data.
    PLoS One. 2017;12:e0174602.
    PubMed     Abstract available


  1301. DECAP D, Reumers J, Herzeel C, Costanza P, et al
    Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.
    PLoS One. 2017;12:e0174575.
    PubMed     Abstract available


  1302. MEINERT C, Brandt U, Heine V, Beyert J, et al
    Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.
    PLoS One. 2017;12:e0174256.
    PubMed     Abstract available


  1303. ARNAU G, Bhattacharjee R, Mn S, Chair H, et al
    Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.
    PLoS One. 2017;12:e0174150.
    PubMed     Abstract available


  1304. WARD LJ, Ljunggren SA, Karlsson H, Li W, et al
    Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages.
    PLoS One. 2017;12:e0174475.
    PubMed     Abstract available


  1305. ZOU B, Li J, Zhou Q, Quan ZX, et al
    MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
    PLoS One. 2017;12:e0174609.
    PubMed     Abstract available


  1306. MARROTTE RR, Bowman J
    The relationship between least-cost and resistance distance.
    PLoS One. 2017;12:e0174212.
    PubMed     Abstract available


  1307. BYRUM SD, Burdine MS, Orr L, Mackintosh SG, et al
    Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection.
    PLoS One. 2017;12:e0174771.
    PubMed     Abstract available


  1308. WOOD LE, De Grave S, Daniels SR
    Phylogeographic patterning among two codistributed shrimp species (Crustacea: Decapoda: Palaemonidae) reveals high levels of connectivity across biogeographic regions along the South African coast.
    PLoS One. 2017;12:e0173356.
    PubMed     Abstract available


  1309. PAGES-MONTEIRO L, Marti R, Commun C, Alliot N, et al
    Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa.
    PLoS One. 2017;12:e0173022.
    PubMed     Abstract available


  1310. REZNICK DN, Furness AI, Meredith RW, Springer MS, et al
    The origin and biogeographic diversification of fishes in the family Poeciliidae.
    PLoS One. 2017;12:e0172546.
    PubMed     Abstract available


  1311. WANG Z, Fan G, Dong Y, Zhai X, et al
    Implications of polyploidy events on the phenotype, microstructure, and proteome of Paulownia australis.
    PLoS One. 2017;12:e0172633.
    PubMed     Abstract available


  1312. CHENG J, Romantsov T, Engel K, Doxey AC, et al
    Functional metagenomics reveals novel beta-galactosidases not predictable from gene sequences.
    PLoS One. 2017;12:e0172545.
    PubMed     Abstract available


  1313. PERUMAL N, Manicam C, Steinicke M, Funke S, et al
    Characterization of the human aqueous humour proteome: A comparison of the genders.
    PLoS One. 2017;12:e0172481.
    PubMed     Abstract available


  1314. HTUN NM, Magliano DJ, Zhang ZY, Lyons J, et al
    Prediction of acute coronary syndromes by urinary proteome analysis.
    PLoS One. 2017;12:e0172036.
    PubMed     Abstract available


  1315. GEBHARDT MJ, Jacobson RK, Shuman HA
    Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria.
    PLoS One. 2017;12:e0173116.
    PubMed     Abstract available


  1316. NAKAOKA T, Iga M, Yamada T, Koujima I, et al
    Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.
    PLoS One. 2017;12:e0172951.
    PubMed     Abstract available


  1317. BATISTA ME, Silva DD, Sales MA, Sa AA, et al
    New data on the stem and leaf anatomy of two conifers from the Lower Cretaceous of the Araripe Basin, northeastern Brazil, and their taxonomic and paleoecological implications.
    PLoS One. 2017;12:e0173090.
    PubMed     Abstract available


  1318. BRYANT AE, Aldape MJ, Bayer CR, Katahira EJ, et al
    Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.
    PLoS One. 2017;12:e0172486.
    PubMed     Abstract available


  1319. BENEVENUTO RF, Agapito-Tenfen SZ, Vilperte V, Wikmark OG, et al
    Molecular responses of genetically modified maize to abiotic stresses as determined through proteomic and metabolomic analyses.
    PLoS One. 2017;12:e0173069.
    PubMed     Abstract available


  1320. PRICE A, Garhyan J, Gibas C
    The impact of RNA secondary structure on read start locations on the Illumina sequencing platform.
    PLoS One. 2017;12:e0173023.
    PubMed     Abstract available


  1321. FOSCHI C, Laghi L, Parolin C, Giordani B, et al
    Novel approaches for the taxonomic and metabolic characterization of lactobacilli: Integration of 16S rRNA gene sequencing with MALDI-TOF MS and 1H-NMR.
    PLoS One. 2017;12:e0172483.
    PubMed     Abstract available


  1322. VARGAS-CARO C, Bustamante C, Bennett MB, Ovenden JR, et al
    Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean.
    PLoS One. 2017;12:e0172255.
    PubMed     Abstract available


  1323. SERGEANT K, Printz B, Gutsch A, Behr M, et al
    Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases.
    PLoS One. 2017;12:e0171990.
    PubMed     Abstract available


  1324. WANG R, Cui Y, Xu Y, Irudayaraj J, et al
    Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-beta-carboline (TaClo) in vitro.
    PLoS One. 2017;12:e0172243.
    PubMed     Abstract available


  1325. KAMFWA K, Zhao D, Kelly JD, Cichy KA, et al
    Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation.
    PLoS One. 2017;12:e0172141.
    PubMed     Abstract available


  1326. PARK YJ, Koh J, Kwon JT, Park YS, et al
    Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes.
    PLoS One. 2017;12:e0169677.
    PubMed     Abstract available


  1327. SAKAKI M, Ebihara Y, Okamura K, Nakabayashi K, et al
    Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses.
    PLoS One. 2017;12:e0171431.
    PubMed     Abstract available


  1328. LI YH, Wang HP, Yao H, O'Bryant P, et al
    De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens.
    PLoS One. 2017;12:e0171187.
    PubMed     Abstract available


  1329. HAMILTON SL, Logan CA, Fennie HW, Sogard SM, et al
    Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics.
    PLoS One. 2017;12:e0169670.
    PubMed     Abstract available


  1330. ZACHER B, Michel M, Schwalb B, Cramer P, et al
    Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
    PLoS One. 2017;12:e0169249.
    PubMed     Abstract available


  1331. BEISSER D, Kaschani F, Graupner N, Grossmann L, et al
    Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
    PLoS One. 2017;12:e0168183.
    PubMed     Abstract available


  1332. NANDAKUMAR P, Tin A, Grove ML, Ma J, et al
    MicroRNAs in the miR-17 and miR-15 families are downregulated in chronic kidney disease with hypertension.
    PLoS One. 2017;12:e0176734.
    PubMed     Abstract available


  1333. CLARKE B, Mahapatra M, Friedgut O, Bumbarov V, et al
    Persistence of Lineage IV Peste-des-petits ruminants virus within Israel since 1993: An evolutionary perspective.
    PLoS One. 2017;12:e0177028.
    PubMed     Abstract available


  1334. SONG J, Hu Y, Li J, Zheng H, et al
    Different microRNA profiles reveal the diverse outcomes induced by EV71 and CA16 infection in human umbilical vein endothelial cells using high-throughput sequencing.
    PLoS One. 2017;12:e0177657.
    PubMed     Abstract available


  1335. MORALES-CORREA E CASTRO AC, Barbosa NCCP
    Recent evolutionary history of Chrysoperla externa (Hagen 1861) (Neuroptera: Chrysopidae) in Brazil.
    PLoS One. 2017;12:e0177414.
    PubMed     Abstract available


  1336. CARRERAS-PLANELLA L, Soler-Majoral J, Rubio-Esteve C, Lozano-Ramos SI, et al
    Characterization and proteomic profile of extracellular vesicles from peritoneal dialysis efflux.
    PLoS One. 2017;12:e0176987.
    PubMed     Abstract available


  1337. KARAH N, Jolley KA, Hall RM, Uhlin BE, et al
    Database for the ampC alleles in Acinetobacter baumannii.
    PLoS One. 2017;12:e0176695.
    PubMed     Abstract available


  1338. ZHU Y, Zhou G, Yu X, Xu Q, et al
    LC-MS-MS quantitative analysis reveals the association between FTO and DNA methylation.
    PLoS One. 2017;12:e0175849.
    PubMed     Abstract available


  1339. RODRIGUES J, Viegas W, Silva M
    45S rDNA external transcribed spacer organization reveals new phylogenetic relationships in Avena genus.
    PLoS One. 2017;12:e0176170.
    PubMed     Abstract available


  1340. WANG J, Pei L, Jin Z, Zhang K, et al
    Overexpression of the protein phosphatase 2A regulatory subunit a gene ZmPP2AA1 improves low phosphate tolerance by remodeling the root system architecture of maize.
    PLoS One. 2017;12:e0176538.
    PubMed     Abstract available


  1341. YARYGIN K, Tyakht A, Larin A, Kostryukova E, et al
    Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses.
    PLoS One. 2017;12:e0176154.
    PubMed     Abstract available


  1342. RAYMOND CK, Hernandez J, Karr R, Hill K, et al
    Collection of cell-free DNA for genomic analysis of solid tumors in a clinical laboratory setting.
    PLoS One. 2017;12:e0176241.
    PubMed     Abstract available


  1343. RUEDA-ZARATE HA, Imaz-Rosshandler I, Cardenas-Ovando RA, Castillo-Fernandez JE, et al
    A computational toxicogenomics approach identifies a list of highly hepatotoxic compounds from a large microarray database.
    PLoS One. 2017;12:e0176284.
    PubMed     Abstract available


  1344. NAOUR S, Espinoza BM, Aedo JE, Zuloaga R, et al
    Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis.
    PLoS One. 2017;12:e0176447.
    PubMed     Abstract available


  1345. BARUAH IK, Panda D, M V J, Das DJ, et al
    Bruchid egg induced transcript dynamics in developing seeds of black gram (Vigna mungo).
    PLoS One. 2017;12:e0176337.
    PubMed     Abstract available


  1346. ROOMP K, Kristinsson H, Schvartz D, Ubhayasekera K, et al
    Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism.
    PLoS One. 2017;12:e0176391.
    PubMed     Abstract available


  1347. FUKUDA T, Nomura M, Kato Y, Tojo H, et al
    A selected reaction monitoring mass spectrometric assessment of biomarker candidates diagnosing large-cell neuroendocrine lung carcinoma by the scaling method using endogenous references.
    PLoS One. 2017;12:e0176219.
    PubMed     Abstract available


  1348. NORONHA FERNANDES-BRUM C, Marinho Rezende P, Cherubino Ribeiro TH, Ricon de Oliveira R, et al
    A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms.
    PLoS One. 2017;12:e0176333.
    PubMed     Abstract available


  1349. JEONG C, Peter BM, Basnyat B, Neupane M, et al
    A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau.
    PLoS One. 2017;12:e0175885.
    PubMed     Abstract available


  1350. VIANA MVC, Figueiredo H, Ramos R, Guimaraes LC, et al
    Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.
    PLoS One. 2017;12:e0176347.
    PubMed     Abstract available


  1351. ONUKI R, Yamaguchi R, Shibuya T, Kanehisa M, et al
    Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks.
    PLoS One. 2017;12:e0176530.
    PubMed     Abstract available


  1352. WELINDER C, Pawlowski K, Szasz AM, Yakovleva M, et al
    Correlation of histopathologic characteristics to protein expression and function in malignant melanoma.
    PLoS One. 2017;12:e0176167.
    PubMed     Abstract available


  1353. SINGH SK, Aspi J, Kvist L, Sharma R, et al
    Fine-scale population genetic structure of the Bengal tiger (Panthera tigris tigris) in a human-dominated western Terai Arc Landscape, India.
    PLoS One. 2017;12:e0174371.
    PubMed     Abstract available


  1354. SALEHE BR, Jones CI, Di Fatta G, McGuffin LJ, et al
    RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses.
    PLoS One. 2017;12:e0175957.
    PubMed     Abstract available


  1355. NAVARRO G, Martinez-Pinilla E, Sanchez-Melgar A, Ortiz R, et al
    A genomics approach identifies selective effects of trans-resveratrol in cerebral cortex neuron and glia gene expression.
    PLoS One. 2017;12:e0176067.
    PubMed     Abstract available


  1356. OH J, Lee S, Lee H, Cho JY, et al
    The novel carboxylesterase 1 variant c.662A>G may decrease the bioactivation of oseltamivir in humans.
    PLoS One. 2017;12:e0176320.
    PubMed     Abstract available


  1357. FRANCOIS L, Wijnrocx K, Colinet FG, Gengler N, et al
    Genomics of a revived breed: Case study of the Belgian campine cattle.
    PLoS One. 2017;12:e0175916.
    PubMed     Abstract available


  1358. LI YZ, Fan XW, Chen Q, Zhong H, et al
    A photoperiod-responsive protein compendium and conceptual proteome roadmap outline in maize grown in growth chambers with controlled conditions.
    PLoS One. 2017;12:e0174003.
    PubMed     Abstract available


  1359. LV J, Zhang L, Liu P, Li J, et al
    Transcriptomic variation of eyestalk reveals the genes and biological processes associated with molting in Portunus trituberculatus.
    PLoS One. 2017;12:e0175315.
    PubMed     Abstract available


  1360. MURPHY SN, Avillach P, Bellazzi R, Phillips L, et al
    Combining clinical and genomics queries using i2b2 - Three methods.
    PLoS One. 2017;12:e0172187.
    PubMed     Abstract available


  1361. MARITZ JM, Sullivan SA, Prill RJ, Aksoy E, et al
    Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.
    PLoS One. 2017;12:e0175527.
    PubMed     Abstract available


  1362. RIBEIRO MM, Piotti A, Ricardo A, Gaspar D, et al
    Genetic diversity and divergence at the Arbutus unedo L. (Ericaceae) westernmost distribution limit.
    PLoS One. 2017;12:e0175239.
    PubMed     Abstract available


  1363. LUDINGTON WB, Seher TD, Applegate O, Li X, et al
    Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater.
    PLoS One. 2017;12:e0174930.
    PubMed     Abstract available


  1364. WEI LH, Yan S, Teo YY, Huang YZ, et al
    Phylogeography of Y-chromosome haplogroup O3a2b2-N6 reveals patrilineal traces of Austronesian populations on the eastern coastal regions of Asia.
    PLoS One. 2017;12:e0175080.
    PubMed     Abstract available


  1365. ZHANG LJ, Cai WZ, Luo JY, Zhang S, et al
    Phylogeographic patterns of Lygus pratensis (Hemiptera: Miridae): Evidence for weak genetic structure and recent expansion in northwest China.
    PLoS One. 2017;12:e0174712.
    PubMed     Abstract available


  1366. NICHOLAS A, Kim YK, Lee WK, Selasi GN, et al
    Molecular epidemiology and antimicrobial susceptibility of Clostridium difficile isolates from two Korean hospitals.
    PLoS One. 2017;12:e0174716.
    PubMed     Abstract available


  1367. WAN X, Zhao X, Yau SS
    An information-based network approach for protein classification.
    PLoS One. 2017;12:e0174386.
    PubMed     Abstract available


  1368. SONG YN, Dong S, Wei B, Liu P, et al
    Metabolomic mechanisms of gypenoside against liver fibrosis in rats: An integrative analysis of proteomics and metabolomics data.
    PLoS One. 2017;12:e0173598.
    PubMed     Abstract available


  1369. FUKAGAWA T, Takafuji K, Tachibanaki S, Kawamura S, et al
    Purification of cone outer segment for proteomic analysis on its membrane proteins in carp retina.
    PLoS One. 2017;12:e0173908.
    PubMed     Abstract available


  1370. CELIS JS, Edgell DR, Stelbrink B, Wibberg D, et al
    Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
    PLoS One. 2017;12:e0173734.
    PubMed     Abstract available


  1371. LIU T, Luo C, Wang J, Ma J, et al
    Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens.
    PLoS One. 2017;12:e0173620.
    PubMed     Abstract available


  1372. GUERRERO-JIMENEZ CJ, Pena F, Morales P, Mendez M, et al
    Pattern of genetic differentiation of an incipient speciation process: The case of the high Andean killifish Orestias.
    PLoS One. 2017;12:e0170380.
    PubMed     Abstract available


  1373. CHRISTENSEN KA, Davidson WS
    Autopolyploidy genome duplication preserves other ancient genome duplications in Atlantic salmon (Salmo salar).
    PLoS One. 2017;12:e0173053.
    PubMed     Abstract available


  1374. MATSUDA F, Kinoshita S, Nishino S, Tomita A, et al
    Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism.
    PLoS One. 2017;12:e0172742.
    PubMed     Abstract available


  1375. LI J, Yang B, Shi M, Yuan K, et al
    Effects upon metabolic pathways and energy production by Sb(III) and As(III)/Sb(III)-oxidase gene aioA in Agrobacterium tumefaciens GW4.
    PLoS One. 2017;12:e0172823.
    PubMed     Abstract available


  1376. HAFT DR, Haft DH
    A comprehensive software suite for protein family construction and functional site prediction.
    PLoS One. 2017;12:e0171758.
    PubMed     Abstract available


  1377. MICALLEF G, Cash P, Fernandes JM, Rajan B, et al
    Dietary Yeast Cell Wall Extract Alters the Proteome of the Skin Mucous Barrier in Atlantic Salmon (Salmo salar): Increased Abundance and Expression of a Calreticulin-Like Protein.
    PLoS One. 2017;12:e0169075.
    PubMed     Abstract available


  1378. ELMI AA, Bansal D, Acharya A, Skariah S, et al
    Human Papillomavirus (HPV) Infection: Molecular Epidemiology, Genotyping, Seroprevalence and Associated Risk Factors among Arab Women in Qatar.
    PLoS One. 2017;12:e0169197.
    PubMed     Abstract available


  1379. JAMANN TM, Sood S, Wisser RJ, Holland JB, et al
    High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time.
    PLoS One. 2017;12:e0168910.
    PubMed     Abstract available


  1380. BOUCHEHAM A, Sommard V, Zehraoui F, Boualem A, et al
    IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data.
    PLoS One. 2017;12:e0179787.
    PubMed     Abstract available


  1381. PINSONNEAULT JK, Frater JT, Kompa B, Mascarenhas R, et al
    Intronic SNP in ESR1 encoding human estrogen receptor alpha is associated with brain ESR1 mRNA isoform expression and behavioral traits.
    PLoS One. 2017;12:e0179020.
    PubMed     Abstract available


  1382. MOHR T, Haudek-Prinz V, Slany A, Grillari J, et al
    Proteome profiling in IL-1beta and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis.
    PLoS One. 2017;12:e0179065.
    PubMed     Abstract available


  1383. PARK KH, Greenwood-Quaintance KE, Uhl JR, Cunningham SA, et al
    Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.
    PLoS One. 2017;12:e0179003.
    PubMed     Abstract available


  1384. SINGH V, Singh B, Joshi R, Jaju P, et al
    Changes in the leaf proteome profile of Withania somnifera (L.) Dunal in response to Alternaria alternata infection.
    PLoS One. 2017;12:e0178924.
    PubMed     Abstract available


  1385. ZHOU DX, Zhao Y, Baker JA, Gu Q, et al
    The effect of alcohol on the differential expression of cluster of differentiation 14 gene, associated pathways, and genetic network.
    PLoS One. 2017;12:e0178689.
    PubMed     Abstract available


  1386. CSOSZ E, Labiscsak P, Kallo G, Markus B, et al
    Proteomics investigation of OSCC-specific salivary biomarkers in a Hungarian population highlights the importance of identification of population-tailored biomarkers.
    PLoS One. 2017;12:e0177282.
    PubMed     Abstract available


  1387. UGARTE TORRES A, Chu A, Read R, MacDonald J, et al
    The epidemiology of Staphylococcus aureus carriage in patients attending inner city sexually transmitted infections and community clinics in Calgary, Canada.
    PLoS One. 2017;12:e0178557.
    PubMed     Abstract available


  1388. GUPTA S, Bhar A, Chatterjee M, Ghosh A, et al
    Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack.
    PLoS One. 2017;12:e0178164.
    PubMed     Abstract available


  1389. TEIXEIRA ADD, Games PD, Katz BB, Tomich JM, et al
    Proteomic analysis in the Dufour's gland of Africanized Apis mellifera workers (Hymenoptera: Apidae).
    PLoS One. 2017;12:e0177415.
    PubMed     Abstract available


  1390. CAMERON SJS, Lewis KE, Huws SA, Hegarty MJ, et al
    A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.
    PLoS One. 2017;12:e0177062.
    PubMed     Abstract available


  1391. WANG X, Shojaie A, Zhang Y, Shelley D, et al
    Exploratory plasma proteomic analysis in a randomized crossover trial of aspirin among healthy men and women.
    PLoS One. 2017;12:e0178444.
    PubMed     Abstract available


  1392. YAMAZAKI T, Hatano Y, Handa T, Kato S, et al
    Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.
    PLoS One. 2017;12:e0177764.
    PubMed     Abstract available


  1393. EVERS C, Fischer C, Dikow N, Schott S, et al
    Familial breast cancer: Genetic counseling over time, including patients expectations and initiators considering the Angelina Jolie effect.
    PLoS One. 2017;12:e0177893.
    PubMed     Abstract available


  1394. XIAO W, Chen P, Xiao J, Wang, et al
    Comparative transcriptome profiling of a thermal resistant vs. sensitive silkworm strain in response to high temperature under stressful humidity condition.
    PLoS One. 2017;12:e0177641.
    PubMed     Abstract available


  1395. HAKIMI O, Ternette N, Murphy R, Kessler BM, et al
    A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue.
    PLoS One. 2017;12:e0177656.
    PubMed     Abstract available


  1396. WILLEMS H, Jacobs A, Hadiwikarta WW, Venken T, et al
    Thermodynamic framework to assess low abundance DNA mutation detection by hybridization.
    PLoS One. 2017;12:e0177384.
    PubMed     Abstract available


  1397. BOHME M, Spassov N, Ebner M, Geraads D, et al
    Messinian age and savannah environment of the possible hominin Graecopithecus from Europe.
    PLoS One. 2017;12:e0177347.
    PubMed     Abstract available


  1398. CHEN YC, Chen KD, Su MC, Chin CH, et al
    Genome-wide gene expression array identifies novel genes related to disease severity and excessive daytime sleepiness in patients with obstructive sleep apnea.
    PLoS One. 2017;12:e0176575.
    PubMed     Abstract available


  1399. PAVA Z, Noviyanti R, Handayuni I, Trimarsanto H, et al
    Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections.
    PLoS One. 2017;12:e0177445.
    PubMed     Abstract available


  1400. RAVIV B, Granot G, Chalifa-Caspi V, Grafi G, et al
    The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.
    PLoS One. 2017;12:e0177537.
    PubMed     Abstract available


  1401. ZHENG Y, Xu S, Liu J, Zhao Y, et al
    Genetic diversity and population structure of Chinese natural bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers.
    PLoS One. 2017;12:e0177508.
    PubMed     Abstract available


  1402. DIEZ BENAVENTE E, Ward Z, Chan W, Mohareb FR, et al
    Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure.
    PLoS One. 2017;12:e0177134.
    PubMed     Abstract available


  1403. KHOMTCHOUK BB, Hennessy JR, Wahlestedt C
    shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.
    PLoS One. 2017;12:e0176334.
    PubMed     Abstract available


  1404. PASCUAL M, Rives B, Schunter C, Macpherson E, et al
    Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea.
    PLoS One. 2017;12:e0176419.
    PubMed     Abstract available


  1405. MONTANA L, Caniglia R, Galaverni M, Fabbri E, et al
    Combining phylogenetic and demographic inferences to assess the origin of the genetic diversity in an isolated wolf population.
    PLoS One. 2017;12:e0176560.
    PubMed     Abstract available


  1406. YU H, Zhang Y, Wang Z, Liu L, et al
    Diverse range dynamics and dispersal routes of plants on the Tibetan Plateau during the late Quaternary.
    PLoS One. 2017;12:e0177101.
    PubMed     Abstract available


  1407. ZHOU Y, Wang S, Zhu H, Li P, et al
    Phylogeny and biogeography of South Chinese brown frogs (Ranidae, Anura).
    PLoS One. 2017;12:e0175113.
    PubMed     Abstract available


  1408. IBANEZ MI, Cabello P, Luque-Almagro VM, Saez LP, et al
    Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).
    PLoS One. 2017;12:e0172908.
    PubMed     Abstract available


  1409. TRIVEDI MS, Holger D, Bui AT, Craddock TJA, et al
    Short-term sleep deprivation leads to decreased systemic redox metabolites and altered epigenetic status.
    PLoS One. 2017;12:e0181978.
    PubMed     Abstract available


  1410. MURPHY SM, Augustine BC, Ulrey WA, Guthrie JM, et al
    Consequences of severe habitat fragmentation on density, genetics, and spatial capture-recapture analysis of a small bear population.
    PLoS One. 2017;12:e0181849.
    PubMed     Abstract available


  1411. TSAI FJ, Chen SY, Liu YC, Liao HY, et al
    The comparison of CHCA solvent compositions for improving LC-MALDI performance and its application to study the impact of aflatoxin B1 on the liver proteome of diabetes mellitus type 1 mice.
    PLoS One. 2017;12:e0181423.
    PubMed     Abstract available


  1412. EREZ O, Romero R, Maymon E, Chaemsaithong P, et al
    The prediction of late-onset preeclampsia: Results from a longitudinal proteomics study.
    PLoS One. 2017;12:e0181468.
    PubMed     Abstract available


  1413. VOLDOIRE E, Brunet F, Naville M, Volff JN, et al
    Expansion by whole genome duplication and evolution of the sox gene family in teleost fish.
    PLoS One. 2017;12:e0180936.
    PubMed     Abstract available


  1414. OLIVEIRA LR, Gehara MCM, Fraga LD, Lopes F, et al
    Ancient female philopatry, asymmetric male gene flow, and synchronous population expansion support the influence of climatic oscillations on the evolution of South American sea lion (Otaria flavescens).
    PLoS One. 2017;12:e0179442.
    PubMed     Abstract available


  1415. SINGH A, Sharma AK, Singh NK, Sharma TR, et al
    PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.
    PLoS One. 2017;12:e0179736.
    PubMed     Abstract available


  1416. HAN Z, Huang H, Gao Y, Huang Q, et al
    Functional annotation of Alzheimer's disease associated loci revealed by GWASs.
    PLoS One. 2017;12:e0179677.
    PubMed     Abstract available


  1417. DUNCAN C, Jamieson FB, Troudt J, Izzo L, et al
    Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion.
    PLoS One. 2017;12:e0179996.
    PubMed     Abstract available


  1418. XU K, Niu Q, Zhao H, Du Y, et al
    Transcriptomic analysis to uncover genes affecting cold resistance in the Chinese honey bee (Apis cerana cerana).
    PLoS One. 2017;12:e0179922.
    PubMed     Abstract available


  1419. MACKIEWICZ P, Moska M, Wierzbicki H, Gagat P, et al
    Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group.
    PLoS One. 2017;12:e0179760.
    PubMed     Abstract available


  1420. WU YH, Cheng H, Xu L, Jin XB, et al
    Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater.
    PLoS One. 2017;12:e0179997.
    PubMed     Abstract available


  1421. SUSEK K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, et al
    Epigenomic diversification within the genus Lupinus.
    PLoS One. 2017;12:e0179821.
    PubMed     Abstract available


  1422. LISTL D, Poschlod P, Reisch C
    Phylogeography of a tough rock survivor in European dry grasslands.
    PLoS One. 2017;12:e0179961.
    PubMed     Abstract available


  1423. RIZAL G, Karki S, Thakur V, Wanchana S, et al
    A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio.
    PLoS One. 2017;12:e0179567.
    PubMed     Abstract available


  1424. BWOGI J, Jere KC, Karamagi C, Byarugaba DK, et al
    Whole genome analysis of selected human and animal rotaviruses identified in Uganda from 2012 to 2014 reveals complex genome reassortment events between human, bovine, caprine and porcine strains.
    PLoS One. 2017;12:e0178855.
    PubMed     Abstract available


  1425. KRUSE A, Fattah-Hosseini S, Saha S, Johnson R, et al
    Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.
    PLoS One. 2017;12:e0179531.
    PubMed     Abstract available


  1426. RIVERA M, Ramos Y, Rodriguez-Valentin M, Lopez-Acevedo S, et al
    Targeting multiple pro-apoptotic signaling pathways with curcumin in prostate cancer cells.
    PLoS One. 2017;12:e0179587.
    PubMed     Abstract available


  1427. ADACHI S
    Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data.
    PLoS One. 2017;12:e0179180.
    PubMed     Abstract available


  1428. PEARSON LJ, Klaharn IY, Thongsawang B, Manuprasert W, et al
    Multiple extracellular vesicle types in peritoneal dialysis effluent are prominent and contain known biomarkers.
    PLoS One. 2017;12:e0178601.
    PubMed     Abstract available


  1429. LUO S, Cao N, Tang Y, Gu W, et al
    Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis.
    PLoS One. 2017;12:e0178549.
    PubMed     Abstract available


  1430. GAMEZ-POZO A, Trilla-Fuertes L, Prado-Vazquez G, Chiva C, et al
    Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics.
    PLoS One. 2017;12:e0178296.
    PubMed     Abstract available


  1431. PANNACCIULLI FG, Maltagliati F, de Guttry C, Achituv Y, et al
    Phylogeography on the rocks: The contribution of current and historical factors in shaping the genetic structure of Chthamalus montagui (Crustacea, Cirripedia).
    PLoS One. 2017;12:e0178287.
    PubMed     Abstract available


  1432. SAHLBERG BANG C, Demirel I, Kruse R, Persson K, et al
    Global gene expression profiling and antibiotic susceptibility after repeated exposure to the carbon monoxide-releasing molecule-2 (CORM-2) in multidrug-resistant ESBL-producing uropathogenic Escherichia coli.
    PLoS One. 2017;12:e0178541.
    PubMed     Abstract available


  1433. NYINE M, Uwimana B, Swennen R, Batte M, et al
    Trait variation and genetic diversity in a banana genomic selection training population.
    PLoS One. 2017;12:e0178734.
    PubMed     Abstract available


  1434. WANG Y, Liu A, Li W, Jiang Y, et al
    Comparative proteomic analysis of eggplant (Solanum melongena L.) heterostylous pistil development.
    PLoS One. 2017;12:e0179018.
    PubMed     Abstract available


  1435. BARANZELLI MC, Cosacov A, Ferreiro G, Johnson LA, et al
    Travelling to the south: Phylogeographic spatial diffusion model in Monttea aphylla (Plantaginaceae), an endemic plant of the Monte Desert.
    PLoS One. 2017;12:e0178827.
    PubMed     Abstract available


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    Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus.
    PLoS One. 2017;12:e0178603.
    PubMed     Abstract available


  1437. KIM JK, Bae SE, Lee SJ, Yoon MG, et al
    New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae).
    PLoS One. 2017;12:e0178001.
    PubMed     Abstract available


  1438. BECKER MG, Walker PL, Pulgar-Vidal NC, Belmonte MF, et al
    SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets.
    PLoS One. 2017;12:e0178256.
    PubMed     Abstract available


  1439. BELL KL, Hamm CA, Shapiro AM, Nice CC, et al
    Sympatric, temporally isolated populations of the pine white butterfly Neophasia menapia, are morphologically and genetically differentiated.
    PLoS One. 2017;12:e0176989.
    PubMed     Abstract available


  1440. KEPPLINGER D, Takhar M, Sasaki M, Hollander Z, et al
    PGCA: An algorithm to link protein groups created from MS/MS data.
    PLoS One. 2017;12:e0177569.
    PubMed     Abstract available


  1441. MEI Y, Bi WL, Greenwald NF, Agar NY, et al
    Genomic profile of human meningioma cell lines.
    PLoS One. 2017;12:e0178322.
    PubMed     Abstract available


  1442. KEARNEY P, Hunsucker SW, Li XJ, Porter A, et al
    An integrated risk predictor for pulmonary nodules.
    PLoS One. 2017;12:e0177635.
    PubMed     Abstract available


  1443. ZAZA G, Dalla Gassa A, Felis G, Granata S, et al
    Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen.
    PLoS One. 2017;12:e0178228.
    PubMed     Abstract available


  1444. PANTOJA Y, Pinheiro K, Veras A, Araujo F, et al
    PanWeb: A web interface for pan-genomic analysis.
    PLoS One. 2017;12:e0178154.
    PubMed     Abstract available


  1445. LEWANDOWSKA DW, Schreiber PW, Schuurmans MM, Ruehe B, et al
    Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection.
    PLoS One. 2017;12:e0177340.
    PubMed     Abstract available


  1446. NEUDITSCHKO M, Raadsma HW, Khatkar MS, Jonas E, et al
    Identification of key contributors in complex population structures.
    PLoS One. 2017;12:e0177638.
    PubMed     Abstract available


  1447. HAJRAH NH, Obaid AY, Atef A, Ramadan AM, et al
    Transcriptomic analysis of salt stress responsive genes in Rhazya stricta.
    PLoS One. 2017;12:e0177589.
    PubMed     Abstract available


  1448. MONDEJAR R, Perez C, Onaindia A, Martinez N, et al
    Molecular basis of targeted therapy in T/NK-cell lymphoma/leukemia: A comprehensive genomic and immunohistochemical analysis of a panel of 33 cell lines.
    PLoS One. 2017;12:e0177524.
    PubMed     Abstract available


  1449. ZHANG W, Xu J, Li Y, Zou X, et al
    A new two-stage method for revealing missing parts of edges in protein-protein interaction networks.
    PLoS One. 2017;12:e0177029.
    PubMed     Abstract available


  1450. VAHIA MN, Yadav N, Ladiwala U, Mathur D, et al
    A diffusion based study of population dynamics: Prehistoric migrations into South Asia.
    PLoS One. 2017;12:e0176985.
    PubMed     Abstract available


  1451. CASTLEY A, Sawleshwarkar S, Varma R, Herring B, et al
    A national study of the molecular epidemiology of HIV-1 in Australia 2005-2012.
    PLoS One. 2017;12:e0170601.
    PubMed     Abstract available


  1452. HAEUSERMANN T, Greshake B, Blasimme A, Irdam D, et al
    Open sharing of genomic data: Who does it and why?
    PLoS One. 2017;12:e0177158.
    PubMed     Abstract available


  1453. TRIFILETTI DM, Sturz VN, Showalter TN, Lobo JM, et al
    Towards decision-making using individualized risk estimates for personalized medicine: A systematic review of genomic classifiers of solid tumors.
    PLoS One. 2017;12:e0176388.
    PubMed     Abstract available


  1454. DANTAS RCC, Silva RTE, Ferreira ML, Goncalves IR, et al
    Molecular epidemiological survey of bacteremia by multidrug resistant Pseudomonas aeruginosa: the relevance of intrinsic resistance mechanisms.
    PLoS One. 2017;12:e0176774.
    PubMed     Abstract available


  1455. PLAIRE D, Puaud S, Marsolier-Kergoat MC, Elalouf JM, et al
    Comparative analysis of the sensitivity of metagenomic sequencing and PCR to detect a biowarfare simulant (Bacillus atrophaeus) in soil samples.
    PLoS One. 2017;12:e0177112.
    PubMed     Abstract available


  1456. KOC I, Caetano-Anolles G
    The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.
    PLoS One. 2017;12:e0176129.
    PubMed     Abstract available


  1457. PETERSEN TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, et al
    MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
    PLoS One. 2017;12:e0176469.
    PubMed     Abstract available


  1458. ROZENBLUM E, Sotelo-Silveira JR, Kim GY, Zhu JY, et al
    Novel near-diploid ovarian cancer cell line derived from a highly aneuploid metastatic ovarian tumor.
    PLoS One. 2017;12:e0182610.
    PubMed     Abstract available


  1459. TONG ML, Zhao Q, Liu LL, Zhu XZ, et al
    Whole genome sequence of the Treponema pallidum subsp. pallidum strain Amoy: An Asian isolate highly similar to SS14.
    PLoS One. 2017;12:e0182768.
    PubMed     Abstract available


  1460. NG PK, Lin SM, Lim PE, Hurtado AQ, et al
    Genetic and morphological analyses of Gracilaria firma and G. changii (Gracilariaceae, Rhodophyta), the commercially important agarophytes in western Pacific.
    PLoS One. 2017;12:e0182176.
    PubMed     Abstract available


  1461. TANI H, Takeshita JI, Aoki H, Nakamura K, et al
    Identification of RNA biomarkers for chemical safety screening in mouse embryonic stem cells using RNA deep sequencing analysis.
    PLoS One. 2017;12:e0182032.
    PubMed     Abstract available


  1462. DENG M, Dong Y, Zhao Z, Li Y, et al
    Dissecting the proteome dynamics of the salt stress induced changes in the leaf of diploid and autotetraploid Paulownia fortunei.
    PLoS One. 2017;12:e0181937.
    PubMed     Abstract available


  1463. BECK SV, Carvalho GR, Barlow A, Ruber L, et al
    Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax.
    PLoS One. 2017;12:e0179557.
    PubMed     Abstract available


  1464. YAKOVLEVA A, Plieskatt JL, Jensen S, Humeida R, et al
    Fit for genomic and proteomic purposes: Sampling the fitness of nucleic acid and protein derivatives from formalin fixed paraffin embedded tissue.
    PLoS One. 2017;12:e0181756.
    PubMed     Abstract available


  1465. SORIA-BOIX C, Donat-Torres MP, Urios V
    Contacts in the last 90,000 years over the Strait of Gibraltar evidenced by genetic analysis of wild boar (Sus scrofa).
    PLoS One. 2017;12:e0181929.
    PubMed     Abstract available


  1466. CHO HR, Kim HS, Park JS, Park SC, et al
    Construction and characterization of the Korean whole saliva proteome to determine ethnic differences in human saliva proteome.
    PLoS One. 2017;12:e0181765.
    PubMed     Abstract available


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