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Articles published in PLoS One
Retrieve available abstracts of 952 articles:
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January 2018

WANG MN, Duan L, Qiao Q, Wang ZF, et al
Phylogeography and conservation genetics of the rare and relict Bretschneidera sinensis (Akaniaceae).
PLoS One. 2018;13:e0189034.
PubMed Text format Abstract available

CHIVA C, Olivella R, Borras E, Espadas G, et al
QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories.
PLoS One. 2018;13:e0189209.
PubMed Text format Abstract available

SCHNITZLER A, Granado J, Putelat O, Arbogast RM, et al
Genetic diversity, genetic structure and diet of ancient and contemporary red deer (Cervus elaphus L.) from north-eastern France.
PLoS One. 2018;13:e0189278.
PubMed Text format Abstract available

KREHENWINKEL H, Fong M, Kennedy S, Huang EG, et al
The effect of DNA degradation bias in passive sampling devices on metabarcoding studies of arthropod communities and their associated microbiota.
PLoS One. 2018;13:e0189188.
PubMed Text format Abstract available

ZABOIKIN M, Freter C, Srinivasakumar N
Gaussian decomposition of high-resolution melt curve derivatives for measuring genome-editing efficiency.
PLoS One. 2018;13:e0190192.
PubMed Text format Abstract available

BZHALAVA Z, Hultin E, Dillner J
Extension of the viral ecology in humans using viral profile hidden Markov models.
PLoS One. 2018;13:e0190938.
PubMed Text format Abstract available

ANDLEY UP, Tycksen E, McGlasson-Naumann BN, Hamilton PD, et al
Probing the changes in gene expression due to alpha-crystallin mutations in mouse models of hereditary human cataract.
PLoS One. 2018;13:e0190817.
PubMed Text format Abstract available

POLJAK S, Ferreiro AM, Chiappero MB, Sanchez J, et al
Phylogeography of screaming hairy armadillo Chaetophractus vellerosus: Successive disjunctions and extinctions due to cyclical climatic changes in southern South America.
PLoS One. 2018;13:e0190944.
PubMed Text format Abstract available

FISCH-MULLER S, Mol JHA, Covain R
An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complex.
PLoS One. 2018;13:e0189789.
PubMed Text format Abstract available

ABOU-ANTOUN TJ, Nazarian J, Ghanem A, Vukmanovic S, et al
Molecular and functional analysis of anchorage independent, treatment-evasive neuroblastoma tumorspheres with enhanced malignant properties: A possible explanation for radio-therapy resistance.
PLoS One. 2018;13:e0189711.
PubMed Text format Abstract available

CLARK CG, Chen CY, Berry C, Walker M, et al
Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds.
PLoS One. 2018;13:e0190836.
PubMed Text format Abstract available

GUO WL, Chen BH, Chen XJ, Guo YY, et al
Transcriptome profiling of pumpkin (Cucurbita moschata Duch.) leaves infected with powdery mildew.
PLoS One. 2018;13:e0190175.
PubMed Text format Abstract available

CHOUDHARY N, Singh V
A census of P. longum's phytochemicals and their network pharmacological evaluation for identifying novel drug-like molecules against various diseases, with a special focus on neurological disorders.
PLoS One. 2018;13:e0191006.
PubMed Text format Abstract available

BALIC I, Vizoso P, Nilo-Poyanco R, Sanhueza D, et al
Transcriptome analysis during ripening of table grape berry cv. Thompson Seedless.
PLoS One. 2018;13:e0190087.
PubMed Text format Abstract available

VILLEGAS LEM, Campolina TB, Barnabe NR, Orfano AS, et al
Zika virus infection modulates the bacterial diversity associated with Aedes aegypti as revealed by metagenomic analysis.
PLoS One. 2018;13:e0190352.
PubMed Text format Abstract available

CHOI JE, Nguyen CM, Lee B, Park JH, et al
Isolation and characterization of a novel metagenomic enzyme capable of degrading bacterial phytotoxin toxoflavin.
PLoS One. 2018;13:e0183893.
PubMed Text format Abstract available

DOGAN MV, Grumbach IM, Michaelson JJ, Philibert RA, et al
Integrated genetic and epigenetic prediction of coronary heart disease in the Framingham Heart Study.
PLoS One. 2018;13:e0190549.
PubMed Text format Abstract available

PETKEVICIUTE R, Stunzenas V, Staneviciute G
Comments on species divergence in the genus Sphaerium (Bivalvia) and phylogenetic affinities of Sphaerium nucleus and S. corneum var. mamillanum based on karyotypes and sequences of 16S and ITS1 rDNA.
PLoS One. 2018;13:e0191427.
PubMed Text format Abstract available

LIU J, Liu J, Wang G, Liu G, et al
Electroacupuncture at Guanyuan (CV 4), Zusanli (ST 36) and Baihui (DU 20) regulate the aging-related changes in gene expression profile of the hippocampus in sub-acutely aging rats.
PLoS One. 2018;13:e0191623.
PubMed Text format Abstract available

TALUKDER SK, Azhaguvel P, Chekhovskiy K, Saha MC, et al
Molecular discrimination of tall fescue morphotypes in association with Festuca relatives.
PLoS One. 2018;13:e0191343.
PubMed Text format Abstract available

TORRES SMF, Furrow E, Souza CP, Granick JL, et al
Salivary proteomics of healthy dogs: An in depth catalog.
PLoS One. 2018;13:e0191307.
PubMed Text format Abstract available

ZHAN Y, Marchand CH, Maes A, Mauries A, et al
Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii.
PLoS One. 2018;13:e0185039.
PubMed Text format Abstract available

FUJITA T, Kozuka-Hata H, Hori Y, Takeuchi J, et al
Shotgun proteomics deciphered age/division of labor-related functional specification of three honeybee (Apis mellifera L.) exocrine glands.
PLoS One. 2018;13:e0191344.
PubMed Text format Abstract available

REYES-VELASCO J, Manthey JD, Bourgeois Y, Freilich X, et al
Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data.
PLoS One. 2018;13:e0190440.
PubMed Text format Abstract available

MAYFIELD AB, Chen YJ, Lu CY, Chen CS, et al
The proteomic response of the reef coral Pocillopora acuta to experimentally elevated temperatures.
PLoS One. 2018;13:e0192001.
PubMed Text format Abstract available

HIBINO A, Saito R, Taniguchi K, Zaraket H, et al
Molecular epidemiology of human respiratory syncytial virus among children in Japan during three seasons and hospitalization risk of genotype ON1.
PLoS One. 2018;13:e0192085.
PubMed Text format Abstract available

GHANDHI SA, Turner HC, Shuryak I, Dugan GO, et al
Whole thorax irradiation of non-human primates induces persistent nuclear damage and gene expression changes in peripheral blood cells.
PLoS One. 2018;13:e0191402.
PubMed Text format Abstract available

ZHAN XY, Zhu QY
Molecular typing of Legionella pneumophila isolates from environmental water samples and clinical samples using a five-gene sequence typing and standard Sequence-Based Typing.
PLoS One. 2018;13:e0190986.
PubMed Text format Abstract available

AIBEKOVA L, Foley B, Hortelano G, Raees M, et al
Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries.
PLoS One. 2018;13:e0191891.
PubMed Text format Abstract available

NOLL LW, Worley JN, Yang X, Shridhar PB, et al
Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin.
PLoS One. 2018;13:e0191362.
PubMed Text format Abstract available

LEVANEN R, Thulin CG, Spong G, Pohjoismaki JLO, et al
Widespread introgression of mountain hare genes into Fennoscandian brown hare populations.
PLoS One. 2018;13:e0191790.
PubMed Text format Abstract available

ALKHAMIS MA, Gallardo C, Jurado C, Soler A, et al
Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa.
PLoS One. 2018;13:e0192565.
PubMed Text format Abstract available

VONDRACEK D, Fuchsova A, Ahrens D, Kral D, et al
Phylogeography and DNA-based species delimitation provide insight into the taxonomy of the polymorphic rose chafer Protaetia (Potosia) cuprea species complex (Coleoptera: Scarabaeidae: Cetoniinae) in the Western Palearctic.
PLoS One. 2018;13:e0192349.
PubMed Text format Abstract available

WALLACE JC, Youngblood JE, Port JA, Cullen AC, et al
Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts.
PLoS One. 2018;13:e0192412.
PubMed Text format Abstract available

TADESSE G, Tessema TS, Beyene G, Aseffa A, et al
Molecular epidemiology of fluoroquinolone resistant Salmonella in Africa: A systematic review and meta-analysis.
PLoS One. 2018;13:e0192575.
PubMed Text format Abstract available

DWIVEDI B, Kowalski J
shinyGISPA: A web application for characterizing phenotype by gene sets using multiple omics data combinations.
PLoS One. 2018;13:e0192563.
PubMed Text format Abstract available

DE LA FUENTE C, Pinkham C, Dabbagh D, Beitzel B, et al
Phosphoproteomic analysis reveals Smad protein family activation following Rift Valley fever virus infection.
PLoS One. 2018;13:e0191983.
PubMed Text format Abstract available

YANG H, Cai Y, Zhuo Z, Yang W, et al
Transcriptome analysis in different developmental stages of Batocera horsfieldi (Coleoptera: Cerambycidae) and comparison of candidate olfactory genes.
PLoS One. 2018;13:e0192730.
PubMed Text format Abstract available

GAUTAM SS, Mac Aogain M, Cooley LA, Haug G, et al
Molecular epidemiology of tuberculosis in Tasmania and genomic characterisation of its first known multi-drug resistant case.
PLoS One. 2018;13:e0192351.
PubMed Text format Abstract available

KANITZ R, Guillot EG, Antoniazza S, Neuenschwander S, et al
Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses.
PLoS One. 2018;13:e0192460.
PubMed Text format Abstract available

VALLES SM, Porter SD, Calcaterra LA
Prospecting for viral natural enemies of the fire ant Solenopsis invicta in Argentina.
PLoS One. 2018;13:e0192377.
PubMed Text format Abstract available

DRAG M, Hansen MB, Kadarmideen HN
Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.
PLoS One. 2018;13:e0192673.
PubMed Text format Abstract available

KUZUYA K, Ichihara S, Suzuki Y, Inoue C, et al
Proteomics analysis identified peroxiredoxin 2 involved in early-phase left ventricular impairment in hamsters with cardiomyopathy.
PLoS One. 2018;13:e0192624.
PubMed Text format Abstract available

POURNOSRAT R, Kaya S, Shaaf S, Kilian B, et al
Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia.
PLoS One. 2018;13:e0192386.
PubMed Text format Abstract available

KHAN R, Roy N, Choi K, Lee SW, et al
Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis.
PLoS One. 2018;13:e0192277.
PubMed Text format Abstract available

DONOVAN PD, Gonzalez G, Higgins DG, Butler G, et al
Identification of fungi in shotgun metagenomics datasets.
PLoS One. 2018;13:e0192898.
PubMed Text format Abstract available

DOUILLARD FP, Mora D, Eijlander RT, Wels M, et al
Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.
PLoS One. 2018;13:e0192452.
PubMed Text format Abstract available

KAMAL AHM, Fessler MB, Chowdhury SM
Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages.
PLoS One. 2018;13:e0193104.
PubMed Text format Abstract available

VELEZ G, Machlab DA, Tang PH, Sun Y, et al
Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases.
PLoS One. 2018;13:e0193250.
PubMed Text format Abstract available

COSTA WJEM, Amorim PF, Mattos JLO
Synchronic historical patterns of species diversification in seasonal aplocheiloid killifishes of the semi-arid Brazilian Caatinga.
PLoS One. 2018;13:e0193021.
PubMed Text format Abstract available

TILAHUN M, Ameni G, Desta K, Zewude A, et al
Molecular epidemiology and drug sensitivity pattern of Mycobacterium tuberculosis strains isolated from pulmonary tuberculosis patients in and around Ambo Town, Central Ethiopia.
PLoS One. 2018;13:e0193083.
PubMed Text format Abstract available

HOU L, Ji Z, Wang G, Wang J, et al
Identification and characterization of microRNAs in the intestinal tissues of sheep (Ovis aries).
PLoS One. 2018;13:e0193371.
PubMed Text format Abstract available

DIETRICH MA, Ciereszko A
Proteomic characterization of fresh spermatozoa and supernatant after cryopreservation in relation to freezability of carp (Cyprinus carpio L) semen.
PLoS One. 2018;13:e0192972.
PubMed Text format Abstract available

KORSHUNOVA T, Lundin K, Malmberg K, Picton B, et al
First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution.
PLoS One. 2018;13:e0192177.
PubMed Text format Abstract available

PRIETO-TORRES DA, Cuervo AM, Bonaccorso E
On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes.
PLoS One. 2018;13:e0191598.
PubMed Text format Abstract available

BHOGOJU S, Nahashon S, Wang X, Darris C, et al
A comparative analysis of microbial profile of Guinea fowl and chicken using metagenomic approach.
PLoS One. 2018;13:e0191029.
PubMed Text format Abstract available

TEIXEIRA MA, Sela N, Atamian HS, Bao E, et al
Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.
PLoS One. 2018;13:e0193239.
PubMed Text format Abstract available

XI T, Zhang G
Integrated analysis of tumor differentiation genes in pancreatic adenocarcinoma.
PLoS One. 2018;13:e0193427.
PubMed Text format Abstract available

WOLDESEMAYAT AA, Modise DM, Gemeildien J, Ndimba BK, et al
Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species.
PLoS One. 2018;13:e0192678.
PubMed Text format Abstract available

PAGNUCO IA, Revuelta MV, Bondino HG, Brun M, et al
HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold.
PLoS One. 2018;13:e0193757.
PubMed Text format Abstract available

ABEYRATNE SAE, Amarasekera SSC, Ranaweera LT, Salpadoru TB, et al
The phylogenetic analysis of VP1 genomic region in foot-and-mouth disease virus serotype O isolates in Sri Lanka reveals the existence of 'Srl-97', a newly named endemic lineage.
PLoS One. 2018;13:e0194077.
PubMed Text format Abstract available

CHAVARIE L, Howland KL, Harris LN, Hansen MJ, et al
From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?
PLoS One. 2018;13:e0193925.
PubMed Text format Abstract available

JOHNSON M, Alsaleh N, Mendoza RP, Persaud I, et al
Genomic and transcriptomic comparison of allergen and silver nanoparticle-induced mast cell degranulation reveals novel non-immunoglobulin E mediated mechanisms.
PLoS One. 2018;13:e0193499.
PubMed Text format Abstract available

DAANE KM, Middleton MC, Sforza RFH, Kamps-Hughes N, et al
Determining the geographic origin of invasive populations of the mealybug Planococcus ficus based on molecular genetic analysis.
PLoS One. 2018;13:e0193852.
PubMed Text format Abstract available

BARTOSOVA-SOJKOVA P, Lovy A, Reed CC, Lisnerova M, et al
Life in a rock pool: Radiation and population genetics of myxozoan parasites in hosts inhabiting restricted spaces.
PLoS One. 2018;13:e0194042.
PubMed Text format Abstract available

KIM K, Jung J, Caetano-Anolles K, Sung S, et al
Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle.
PLoS One. 2018;13:e0193701.
PubMed Text format Abstract available

ZHANG Z, Du H, Bai L, Yang C, et al
Whole genome bisulfite sequencing reveals unique adaptations to high-altitude environments in Tibetan chickens.
PLoS One. 2018;13:e0193597.
PubMed Text format Abstract available

THAPA K, Manandhar S, Bista M, Shakya J, et al
Assessment of genetic diversity, population structure, and gene flow of tigers (Panthera tigris tigris) across Nepal's Terai Arc Landscape.
PLoS One. 2018;13:e0193495.
PubMed Text format Abstract available

DE OLIVEIRA UC, Nishiyama MY Jr, Dos Santos MBV, Santos-da-Silva AP, et al
Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions.
PLoS One. 2018;13:e0193739.
PubMed Text format Abstract available

ZHANG X, Chen D, Xu G, Huang W, et al
Molecular epidemiology and drug resistant mechanism in carbapenem-resistant Klebsiella pneumoniae isolated from pediatric patients in Shanghai, China.
PLoS One. 2018;13:e0194000.
PubMed Text format Abstract available

HARVEY AJ, O'Brien C, Lambshead J, Sheedy JR, et al
Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.
PLoS One. 2018;13:e0193949.
PubMed Text format Abstract available

BEKKER EI, Karabanov DP, Galimov YR, Haag CR, et al
Phylogeography of Daphnia magna Straus (Crustacea: Cladocera) in Northern Eurasia: Evidence for a deep longitudinal split between mitochondrial lineages.
PLoS One. 2018;13:e0194045.
PubMed Text format Abstract available

ZENG L, Kortschak RD, Raison JM, Bertozzi T, et al
Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies.
PLoS One. 2018;13:e0193588.
PubMed Text format Abstract available

RUSU I, Modi A, Vai S, Pilli E, et al
Maternal DNA lineages at the gate of Europe in the 10th century AD.
PLoS One. 2018;13:e0193578.
PubMed Text format Abstract available

AGARAS BC, Iriarte A, Valverde CF
Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.
PLoS One. 2018;13:e0194088.
PubMed Text format Abstract available

XING M, Sun C, Li H, Hu S, et al
Integrated analysis of transcriptome and proteome changes related to the Ogura cytoplasmic male sterility in cabbage.
PLoS One. 2018;13:e0193462.
PubMed Text format Abstract available

BUHNER S, Hahne H, Hartwig K, Li Q, et al
Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients.
PLoS One. 2018;13:e0193943.
PubMed Text format Abstract available

SKEIE JM, Aldrich BT, Goldstein AS, Schmidt GA, et al
Proteomic analysis of corneal endothelial cell-descemet membrane tissues reveals influence of insulin dependence and disease severity in type 2 diabetes mellitus.
PLoS One. 2018;13:e0192287.
PubMed Text format Abstract available

BERG AT, Chakravorty S, Koh S, Grinspan ZM, et al
Why West? Comparisons of clinical, genetic and molecular features of infants with and without spasms.
PLoS One. 2018;13:e0193599.
PubMed Text format Abstract available

MIYAUCHI E, Furuta T, Ohtsuki S, Tachikawa M, et al
Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics.
PLoS One. 2018;13:e0193799.
PubMed Text format Abstract available

HUANG J, Wei H, Li L, Yu S, et al
Transcriptome analysis of nitric oxide-responsive genes in upland cotton (Gossypium hirsutum).
PLoS One. 2018;13:e0192367.
PubMed Text format Abstract available

GOMES VIANA JP, Bohrer Monteiro Siqueira MV, Araujo FL, Grando C, et al
Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
PLoS One. 2018;13:e0192165.
PubMed Text format Abstract available

AUMAILLEY L, Roux-Dalvai F, Kelly I, Droit A, et al
Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein.
PLoS One. 2018;13:e0193170.
PubMed Text format Abstract available

CRONA K
Recombination and peak jumping.
PLoS One. 2018;13:e0193123.
PubMed Text format Abstract available

NEWBERG LA, Chen X, Kodira CD, Zavodszky MI, et al
Computational de novo discovery of distinguishing genes for biological processes and cell types in complex tissues.
PLoS One. 2018;13:e0193067.
PubMed Text format Abstract available

HICKS J, Stuber T, Lantz K, Erdman M, et al
Genomic diversity of Taylorella equigenitalis introduced into the United States from 1978 to 2012.
PLoS One. 2018;13:e0194253.
PubMed Text format Abstract available

MA J, Saghatelian A, Shokhirev MN
The influence of transcript assembly on the proteogenomics discovery of microproteins.
PLoS One. 2018;13:e0194518.
PubMed Text format Abstract available

GELDENHUYS M, Mortlock M, Weyer J, Bezuidt O, et al
A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa.
PLoS One. 2018;13:e0194527.
PubMed Text format Abstract available

LIU C, Ran X, Wang J, Li S, et al
Detection of genomic structural variations in Guizhou indigenous pigs and the comparison with other breeds.
PLoS One. 2018;13:e0194282.
PubMed Text format Abstract available

DONG Y, Sun Y, Qin C
Predicting protein complexes using a supervised learning method combined with local structural information.
PLoS One. 2018;13:e0194124.
PubMed Text format Abstract available

SANCHEZ C, Mazzucchelli G, Lambert C, Comblain F, et al
Comparison of secretome from osteoblasts derived from sclerotic versus non-sclerotic subchondral bone in OA: A pilot study.
PLoS One. 2018;13:e0194591.
PubMed Text format Abstract available

OXUSOFF L, Prea P, Perez Y
A complete logical approach to resolve the evolution and dynamics of mitochondrial genome in bilaterians.
PLoS One. 2018;13:e0194334.
PubMed Text format Abstract available

VISSER JH, Bennett NC, Jansen van Vuuren B
Spatial genetic diversity in the Cape mole-rat, Georychus capensis: Extreme isolation of populations in a subterranean environment.
PLoS One. 2018;13:e0194165.
PubMed Text format Abstract available

CHEN C, Long L, Zhang F, Chen Q, et al
Antifungal activity, main active components and mechanism of Curcuma longa extract against Fusarium graminearum.
PLoS One. 2018;13:e0194284.
PubMed Text format Abstract available

BLANCO-GUILLOT F, Castaneda-Cediel ML, Cruz-Hervert P, Ferreyra-Reyes L, et al
Genotyping and spatial analysis of pulmonary tuberculosis and diabetes cases in the state of Veracruz, Mexico.
PLoS One. 2018;13:e0193911.
PubMed Text format Abstract available

PAROLO S, Marchetti L, Lauria M, Misselbeck K, et al
Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy.
PLoS One. 2018;13:e0194225.
PubMed Text format Abstract available

HAJJEJ A, Almawi WY, Arnaiz-Villena A, Hattab L, et al
The genetic heterogeneity of Arab populations as inferred from HLA genes.
PLoS One. 2018;13:e0192269.
PubMed Text format Abstract available

WILSON AM, van der Nest MA, Wilken PM, Wingfield MJ, et al
Pheromone expression reveals putative mechanism of unisexuality in a saprobic ascomycete fungus.
PLoS One. 2018;13:e0192517.
PubMed Text format Abstract available

SUN X, Stewart DA, Sandhu R, Kirk EL, et al
Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue.
PLoS One. 2018;13:e0193792.
PubMed Text format Abstract available

WEBER KS, Bridgewater LC, Jensen JL, Breakwell DP, et al
Personal microbiome analysis improves student engagement and interest in Immunology, Molecular Biology, and Genomics undergraduate courses.
PLoS One. 2018;13:e0193696.
PubMed Text format Abstract available

PEOPLES LM, Donaldson S, Osuntokun O, Xia Q, et al
Vertically distinct microbial communities in the Mariana and Kermadec trenches.
PLoS One. 2018;13:e0195102.
PubMed Text format Abstract available

SEMERARO R, Orlandini V, Magi A
Xome-Blender: A novel cancer genome simulator.
PLoS One. 2018;13:e0194472.
PubMed Text format Abstract available

STOJANOVA B, Surinova M, Klapste J, Kolarikova V, et al
Adaptive differentiation of Festuca rubra along a climate gradient revealed by molecular markers and quantitative traits.
PLoS One. 2018;13:e0194670.
PubMed Text format Abstract available

CIRILLO E, Kutmon M, Gonzalez Hernandez M, Hooimeijer T, et al
From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results.
PLoS One. 2018;13:e0193515.
PubMed Text format Abstract available

BAMBHROLIYA A, Van Wyhe RD, Kumar S, Debeb BG, et al
Gene set analysis of post-lactational mammary gland involution gene signatures in inflammatory and triple-negative breast cancer.
PLoS One. 2018;13:e0192689.
PubMed Text format Abstract available

HENNEMAN P, Bouman A, Mul A, Knegt L, et al
Widespread domain-like perturbations of DNA methylation in whole blood of Down syndrome neonates.
PLoS One. 2018;13:e0194938.
PubMed Text format Abstract available

JOENVAARA S, Saraswat M, Kuusela P, Saraswat S, et al
Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients.
PLoS One. 2018;13:e0195006.
PubMed Text format Abstract available

CARTMELL KB, Sterba KR, Pickett K, Zapka J, et al
Availability of patient-centered cancer support services: A statewide survey of cancer centers.
PLoS One. 2018;13:e0194649.
PubMed Text format Abstract available

KELLY AC, Ward TJ
Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen.
PLoS One. 2018;13:e0194616.
PubMed Text format Abstract available

DI FEDE M, Biagini M, Cartocci E, Parillo C, et al
Neisseria Heparin Binding Antigen is targeted by the human alternative pathway C3-convertase.
PLoS One. 2018;13:e0194662.
PubMed Text format Abstract available

DEPERI SI, Tagliotti ME, Bedogni MC, Manrique-Carpintero NC, et al
Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs.
PLoS One. 2018;13:e0194398.
PubMed Text format Abstract available

FILIPOVA D, Henry M, Rotshteyn T, Brunn A, et al
Distinct transcriptomic changes in E14.5 mouse skeletal muscle lacking RYR1 or Cav1.1 converge at E18.5.
PLoS One. 2018;13:e0194428.
PubMed Text format Abstract available

DA SILVA M, Noll FB, E Castro ACM
Phylogeographic analysis reveals high genetic structure with uniform phenotypes in the paper wasp Protonectarina sylveirae (Hymenoptera: Vespidae).
PLoS One. 2018;13:e0194424.
PubMed Text format Abstract available

GARRIS HW, Baldwin SA, Taylor J, Gurr DB, et al
Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment.
PLoS One. 2018;13:e0196032.
PubMed Text format Abstract available

ROSLI R, Amiruddin N, Ab Halim MA, Chan PL, et al
Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.
PLoS One. 2018;13:e0194792.
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YANG S, Wang Y, Wang L, Shi Z, et al
RNA-Seq reveals differentially expressed genes affecting polyunsaturated fatty acids percentage in the Huangshan Black chicken population.
PLoS One. 2018;13:e0195132.
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SCHUSTER TM, Setaro SD, Tibbits JFG, Batty EL, et al
Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae).
PLoS One. 2018;13:e0195034.
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CHAI JH, Lee CK, Lee HK, Wong N, et al
Cost-benefit analysis of introducing next-generation sequencing (metagenomic) pathogen testing in the setting of pyrexia of unknown origin.
PLoS One. 2018;13:e0194648.
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JMEL H, Romdhane L, Ben Halima Y, Hechmi M, et al
Pharmacogenetic landscape of Metabolic Syndrome components drug response in Tunisia and comparison with worldwide populations.
PLoS One. 2018;13:e0194842.
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SELA I, Wolf YI, Koonin EV
Estimation of universal and taxon-specific parameters of prokaryotic genome evolution.
PLoS One. 2018;13:e0195571.
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HU Y, Hao X, Chen L, Akhberdi O, et al
Galpha-cAMP/PKA pathway positively regulates pigmentation, chaetoglobosin A biosynthesis and sexual development in Chaetomium globosum.
PLoS One. 2018;13:e0195553.
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KEREN-AVIRAM G, Dachet F, Bagla S, Balan K, et al
Proteomic analysis of human epileptic neocortex predicts vascular and glial changes in epileptic regions.
PLoS One. 2018;13:e0195639.
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ZHOU N, Katz M, Knecht W, Compagno C, et al
Genome dynamics and evolution in yeasts: A long-term yeast-bacteria competition experiment.
PLoS One. 2018;13:e0194911.
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FERREIRA DA SILVA MJ, Kopp GH, Casanova C, Godinho R, et al
Disrupted dispersal and its genetic consequences: Comparing protected and threatened baboon populations (Papio papio) in West Africa.
PLoS One. 2018;13:e0194189.
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MAHMOUD M, Zeng Y, Shirali M, Yin T, et al
Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens.
PLoS One. 2018;13:e0194374.
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GOLIZEH M, Melendez-Pena CE, Ward BJ, Saeed S, et al
Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging.
PLoS One. 2018;13:e0195148.
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UMAIR M, Abbasi BH, Sharif S, Alam MM, et al
High prevalence of G3 rotavirus in hospitalized children in Rawalpindi, Pakistan during 2014.
PLoS One. 2018;13:e0195947.
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LI S, Dou X, Gao R, Ge X, et al
A remark on copy number variation detection methods.
PLoS One. 2018;13:e0196226.
PubMed Text format Abstract available

SILVA AC, Souza AF
Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America.
PLoS One. 2018;13:e0196130.
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MA Y, Gu L, Yang L, Sun C, et al
Identifying artificial selection signals in the chicken genome.
PLoS One. 2018;13:e0196215.
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MENDES CB, Norenburg JL, Solferini VN, Andrade SCS, et al
Hidden diversity: Phylogeography of genus Ototyphlonemertes Diesing, 1863 (Ototyphlonemertidae: Hoplonemertea) reveals cryptic species and high diversity in Chilean populations.
PLoS One. 2018;13:e0195833.
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RODGER YS, Greenbaum G, Silver M, Bar-David S, et al
Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species' global distribution: Combining classical population genetics and network analyses.
PLoS One. 2018;13:e0194901.
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GHORBANI A, Izadpanah K, Dietzgen RG
Changes in maize transcriptome in response to maize Iranian mosaic virus infection.
PLoS One. 2018;13:e0194592.
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URRESTARAZU J, Errea P, Miranda C, Santesteban LG, et al
Genetic diversity of Spanish Prunus domestica L. germplasm reveals a complex genetic structure underlying.
PLoS One. 2018;13:e0195591.
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KHAN G, Ribeiro PM, Bonatelli IAS, Perez MF, et al
Weak population structure and no genetic erosion in Pilosocereus aureispinus: A microendemic and threatened cactus species from eastern Brazil.
PLoS One. 2018;13:e0195475.
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HOLM M, Saraswat M, Joenvaara S, Ristimaki A, et al
Colorectal cancer patients with different C-reactive protein levels and 5-year survival times can be differentiated with quantitative serum proteomics.
PLoS One. 2018;13:e0195354.
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SKOWRON PM, Kropinski AM, Zebrowska J, Janus L, et al
Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.
PLoS One. 2018;13:e0195449.
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TANDON D, Haque MM, R S, Shaikh S, et al
A snapshot of gut microbiota of an adult urban population from Western region of India.
PLoS One. 2018;13:e0195643.
PubMed Text format Abstract available

ZENG J, Garrick D, Dekkers J, Fernando R, et al
A nested mixture model for genomic prediction using whole-genome SNP genotypes.
PLoS One. 2018;13:e0194683.
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GLASSET B, Herbin S, Granier SA, Cavalie L, et al
Bacillus cereus, a serious cause of nosocomial infections: Epidemiologic and genetic survey.
PLoS One. 2018;13:e0194346.
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TSURU M, Ono A, Umeyama H, Takeuchi M, et al
Ubiquitin-dependent proteolysis of CXCL7 leads to posterior longitudinal ligament ossification.
PLoS One. 2018;13:e0196204.
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RAHMAN F, Hassan M, Rosli R, Almousally I, et al
Evolutionary and genomic analysis of the caleosin/peroxygenase (CLO/PXG) gene/protein families in the Viridiplantae.
PLoS One. 2018;13:e0196669.
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RYSKALIYEVA A, Henry C, Miranda G, Faye B, et al
Combining different proteomic approaches to resolve complexity of the milk protein fraction of dromedary, Bactrian camels and hybrids, from different regions of Kazakhstan.
PLoS One. 2018;13:e0197026.
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NEUBAUER PR, Widmann C, Wibberg D, Schroder L, et al
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
PLoS One. 2018;13:e0196797.
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FISCHER L, Rappsilber J
False discovery rate estimation and heterobifunctional cross-linkers.
PLoS One. 2018;13:e0196672.
PubMed Text format Abstract available

MIAO YT, Deng Y, Jia HK, Liu YD, et al
Proteomic analysis of watery saliva secreted by white-backed planthopper, Sogatella furcifera.
PLoS One. 2018;13:e0193831.
PubMed Text format Abstract available

BENOIT JB, Frank DN, Bessesen MT
Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.
PLoS One. 2018;13:e0195860.
PubMed Text format Abstract available

HEBERLING JM, Mason NWH
Are endemics functionally distinct? Leaf traits of native and exotic woody species in a New Zealand forest.
PLoS One. 2018;13:e0196746.
PubMed Text format Abstract available

KLANGNURAK W, Fukuyo T, Rezanujjaman MD, Seki M, et al
Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish.
PLoS One. 2018;13:e0196544.
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KOSTRIKIS LG, Hezka J, Stylianou DC, Kostaki E, et al
HIV-1 transmission networks across Cyprus (2010-2012).
PLoS One. 2018;13:e0195660.
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PUENTE C, Abian-Vicen J, Del Coso J, Lara B, et al
The CYP1A2 -163C>A polymorphism does not alter the effects of caffeine on basketball performance.
PLoS One. 2018;13:e0195943.
PubMed Text format Abstract available

RAINE A, Liljedahl U, Nordlund J
Data quality of whole genome bisulfite sequencing on Illumina platforms.
PLoS One. 2018;13:e0195972.
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MARTINS MP, Gomes EV, Sanches PR, Pedersoli WR, et al
mus-52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability.
PLoS One. 2018;13:e0195871.
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BETIKU OC, Yeoman CJ, Gaylord TG, Americus B, et al
Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout.
PLoS One. 2018;13:e0195967.
PubMed Text format Abstract available

MOHAMED RAMLI N, Giatsis C, Md Yusoff F, Verreth J, et al
Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation.
PLoS One. 2018;13:e0195862.
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RIVERA SF, Vasselon V, Ballorain K, Carpentier A, et al
DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior.
PLoS One. 2018;13:e0195770.
PubMed Text format Abstract available

GOG JR, Lever AML, Skittrall JP
A new method for detecting signal regions in ordered sequences of real numbers, and application to viral genomic data.
PLoS One. 2018;13:e0195763.
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DOLMATOV IY, Afanasyev SV, Boyko AV
Molecular mechanisms of fission in echinoderms: Transcriptome analysis.
PLoS One. 2018;13:e0195836.
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PAQUETTE SJ, Stanford K, Thomas J, Reuter T, et al
Quantitative surveillance of shiga toxins 1 and 2, Escherichia coli O178 and O157 in feces of western-Canadian slaughter cattle enumerated by droplet digital PCR with a focus on seasonality and slaughterhouse location.
PLoS One. 2018;13:e0195880.
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TRAMUTO F, Maida CM, Pojero F, Colomba GME, et al
Case-based surveillance of measles in Sicily during 2012-2017: The changing molecular epidemiology and implications for vaccine strategies.
PLoS One. 2018;13:e0195256.
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SPITSYN VM, Kondakov AV, Bolotov NI, Thi Pham N, et al
DNA barcoding unravels contrasting evolutionary history of two widespread Asian tiger moth species during the Late Pleistocene.
PLoS One. 2018;13:e0194200.
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BRINKMAN NE, Villegas EN, Garland JL, Keely SP, et al
Reducing inherent biases introduced during DNA viral metagenome analyses of municipal wastewater.
PLoS One. 2018;13:e0195350.
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MENOTTA M, Orazi S, Gioacchini AM, Spapperi C, et al
Proteomics and transcriptomics analyses of ataxia telangiectasia cells treated with Dexamethasone.
PLoS One. 2018;13:e0195388.
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CASTILLO H, Li X, Schilkey F, Smith GB, et al
Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation.
PLoS One. 2018;13:e0196472.
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WILLMANN C, Mata X, Hanghoej K, Tonasso L, et al
Oral health status in historic population: Macroscopic and metagenomic evidence.
PLoS One. 2018;13:e0196482.
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DEPRA GC, Graca WJD, Pavanelli CS, Avelino GS, et al
Molecular phylogeny of Planaltina Bohlke (Characidae: Stevardiinae) and comments on the definition and geographic distribution of the genus, with description of a new species.
PLoS One. 2018;13:e0196291.
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ILIE DE, Kusza S, Sauer M, Gavojdian D, et al
Genetic characterization of indigenous goat breeds in Romania and Hungary with a special focus on genetic resistance to mastitis and gastrointestinal parasitism based on 40 SNPs.
PLoS One. 2018;13:e0197051.
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MOYANO E, Martinez-Rivas FJ, Blanco-Portales R, Molina-Hidalgo FJ, et al
Genome-wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria x ananassa fruits.
PLoS One. 2018;13:e0196953.
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YU Z, Boehm CR, Hibberd JM, Abell C, et al
Droplet-based microfluidic analysis and screening of single plant cells.
PLoS One. 2018;13:e0196810.
PubMed Text format Abstract available

ZHANG T, Xu J, Deng S, Zhou F, et al
Core signaling pathways in ovarian cancer stem cell revealed by integrative analysis of multi-marker genomics data.
PLoS One. 2018;13:e0196351.
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DELEYE L, Gansemans Y, De Coninck D, Van Nieuwerburgh F, et al
Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods.
PLoS One. 2018;13:e0196334.
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SELEPE MM, Ceccobelli S, Lasagna E, Kunene NW, et al
Genetic structure of South African Nguni (Zulu) sheep populations reveals admixture with exotic breeds.
PLoS One. 2018;13:e0196276.
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DHARANIPRAGADA P, Vogeti S, Parekh N
iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
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LEMES RB, Nunes K, Carnavalli JEP, Kimura L, et al
Inbreeding estimates in human populations: Applying new approaches to an admixed Brazilian isolate.
PLoS One. 2018;13:e0196360.
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FREITAS AC, Hill JE
Bifidobacteria isolated from vaginal and gut microbiomes are indistinguishable by comparative genomics.
PLoS One. 2018;13:e0196290.
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ZHOU S, Zhang J, Ma F, Tang C, et al
Investigation of lignocellulolytic enzymes during different growth phases of Ganoderma lucidum strain G0119 using genomic, transcriptomic and secretomic analyses.
PLoS One. 2018;13:e0198404.
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YANG L, Gao Q, Dai J, Yuan G, et al
Comparative transcriptome analysis of silkworm, Bombyx mori colleterial gland suggests their functional role in mucous secretion.
PLoS One. 2018;13:e0198077.
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OSAWA M
A repetitive mutation and selection system for bacterial evolution to increase the specific affinity to pancreatic cancer cells.
PLoS One. 2018;13:e0198157.
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PETERSEN DR, Saba LM, Sayin VI, Papagiannakopoulos T, et al
Elevated Nrf-2 responses are insufficient to mitigate protein carbonylation in hepatospecific PTEN deletion mice.
PLoS One. 2018;13:e0198139.
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ROOIJAKKERS BJM, Ikonen MS, Linder MB
Fungal-type carbohydrate binding modules from the coccolithophore Emiliania huxleyi show binding affinity to cellulose and chitin.
PLoS One. 2018;13:e0197875.
PubMed Text format Abstract available

SMITH SA, Brown JW, Walker JF
So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.
PLoS One. 2018;13:e0197433.
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WONG EHC, Dong YY, Coray M, Cortada M, et al
Inner ear exosomes and their potential use as biomarkers.
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FUENTES A, Braswell WE, Ruiz-Arce R, Racelis A, et al
Genetic variation and population structure of Diaphorina citri using cytochrome oxidase I sequencing.
PLoS One. 2018;13:e0198399.
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HARDISON DR, Holland WC, Darius HT, Chinain M, et al
Investigation of ciguatoxins in invasive lionfish from the greater caribbean region: Implications for fishery development.
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FLATAU L, Reitt M, Duttge G, Lenk C, et al
Genomic information and a person's right not to know: A closer look at variations in hypothetical informational preferences in a German sample.
PLoS One. 2018;13:e0198249.
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YOSHINO H, Yamaji F, Ohsawa TA
Genetic structure and dispersal patterns in Limnoria nagatai (Limnoriidae, Isopoda) dwelling in non-buoyant kelps, Eisenia bicyclis and E. arborea, in Japan.
PLoS One. 2018;13:e0198451.
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ZHANG H, Kang H, Su C, Qi Y, et al
Genome-wide identification and expression profile analysis of the NAC transcription factor family during abiotic and biotic stress in woodland strawberry.
PLoS One. 2018;13:e0197892.
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KUWABARA Y, Katayama A, Kurihara S, Orimo H, et al
Immunoproteomic identification of anti-C9 autoimmune antibody in patients with seronegative obstetric antiphospholipid syndrome.
PLoS One. 2018;13:e0198472.
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TORNER K, Nakanishi T, Matsuura T, Kato Y, et al
Genomic integration and ligand-dependent activation of the human estrogen receptor alpha in the crustacean Daphnia magna.
PLoS One. 2018;13:e0198023.
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DIAZ A, Gerard K, Gonzalez-Wevar C, Maturana C, et al
Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: The role of the last glaciation.
PLoS One. 2018;13:e0197611.
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WANG X, Li L, Wei X, Wang Y, et al
Proteomic analysis of the response of Trichinella spiralis muscle larvae to exogenous nitric oxide.
PLoS One. 2018;13:e0198205.
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WINANS GA, Allen MB, Baker J, Lesko E, et al
Dam trout: Genetic variability in Oncorhynchus mykiss above and below barriers in three Columbia River systems prior to restoring migrational access.
PLoS One. 2018;13:e0197571.
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BLANCO RY, Loureiro CL, Villalba JA, Sulbaran YF, et al
Decreasing prevalence of Hepatitis B and absence of Hepatitis C Virus infection in the Warao indigenous population of Venezuela.
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HOLZ PH, Lumsden LF, Druce J, Legione AR, et al
Virus survey in populations of two subspecies of bent-winged bats (Miniopterus orianae bassanii and oceanensis) in south-eastern Australia reveals a high prevalence of diverse herpesviruses.
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SILVA-BRANDAO KL, Peruchi A, Seraphim N, Murad NF, et al
Loci under selection and markers associated with host plant and host-related strains shape the genetic structure of Brazilian populations of Spodoptera frugiperda (Lepidoptera, Noctuidae).
PLoS One. 2018;13:e0197378.
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QIU L, Zhao C, Wang P, Fan S, et al
Genomic structure, expression, and functional characterization of checkpoint kinase 1 from Penaeus monodon.
PLoS One. 2018;13:e0198036.
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GAO B, Peng C, Chen Q, Zhang J, et al
Mitochondrial genome sequencing of a vermivorous cone snail Conus quercinus supports the correlative analysis between phylogenetic relationships and dietary types of Conus species.
PLoS One. 2018;13:e0193053.
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KUNDU S, Cheng Y, Shin M, Manyam G, et al
Bayesian variable selection with graphical structure learning: Applications in integrative genomics.
PLoS One. 2018;13:e0195070.
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CHHABRA V, Anand AS, Baidya AK, Malik SM, et al
Hypobaric hypoxia induced renal damage is mediated by altering redox pathway.
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LANGEN B, Rudqvist N, Spetz J, Helou K, et al
Deconvolution of expression microarray data reveals 131I-induced responses otherwise undetected in thyroid tissue.
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CASTILLO VARDARO JA, Epps CW, Frable BW, Ray C, et al
Identification of a contact zone and hybridization for two subspecies of the American pika (Ochotona princeps) within a single protected area.
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SIVAY MV, Hudelson SE, Wang J, Agyei Y, et al
HIV-1 diversity among young women in rural South Africa: HPTN 068.
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ZHANG W, Sun P, He Q, Shu F, et al
Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice.
PLoS One. 2018;13:e0199077.
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AMORIM PF, Costa WJEM
Multigene phylogeny supports diversification of four-eyed fishes and one-sided livebearers (Cyprinodontiformes: Anablepidae) related to major South American geological events.
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SEKIHARA K, Saitoh K, Yang H, Kawashima H, et al
Low-dose ionizing radiation exposure represses the cell cycle and protein synthesis pathways in in vitro human primary keratinocytes and U937 cell lines.
PLoS One. 2018;13:e0199117.
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CAIRNS KM, Shannon LM, Koler-Matznick J, Ballard JWO, et al
Elucidating biogeographical patterns in Australian native canids using genome wide SNPs.
PLoS One. 2018;13:e0198754.
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GAO Y, Zhang L, Zhao S, Yan Y, et al
Comparative analysis of the male inflorescence transcriptome profiles of an ms22 mutant of maize.
PLoS One. 2018;13:e0199437.
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SALOVSKA B, Janeckova H, Fabrik I, Karlikova R, et al
Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells.
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BEN HAMDA C, Sangeda R, Mwita L, Meintjes A, et al
A common molecular signature of patients with sickle cell disease revealed by microarray meta-analysis and a genome-wide association study.
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SOUZA-SHIBATTA L, Tonini JFR, Abrahao VP, Jarduli LR, et al
Reappraisal of the systematics of Microglanis cottoides (Siluriformes, Pseudopimelodidae), a catfish from southern Brazil.
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CHENG M, Mei B, Zhou Q, Zhang M, et al
Computational analyses of obesity associated loci generated by genome-wide association studies.
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HEIDEN BT, Chen G, Hermann M, Brown RKJ, et al
18F-FDG PET intensity correlates with a hypoxic gene signature and other oncogenic abnormalities in operable non-small cell lung cancer.
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MARETE A, Lund MS, Boichard D, Ramayo-Caldas Y, et al
A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds.
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CRANE NL, Tariel J, Caselle JE, Friedlander AM, et al
Clipperton Atoll as a model to study small marine populations: Endemism and the genomic consequences of small population size.
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CHENG Y, Zhao X, Chen Y, Li Y, et al
Circulating immune complexome analysis identified anti-tubulin-alpha-1c as an inflammation associated autoantibody with promising diagnostic value for Behcet's Disease.
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LI X, Naser SA, Khaled A, Hu H, et al
When old metagenomic data meet newly sequenced genomes, a case study.
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YAN L, Zhao C, Zhang J, Qiu L, et al
Transcriptomic analyses of gastrointestinal function in the "dwarf" and "medium" forms of Sthenoteuthis oualaniensis during sexual maturation.
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SOARES MARTINS T, Catita J, Martins Rosa I, A B da Cruz E Silva O, et al
Exosome isolation from distinct biofluids using precipitation and column-based approaches.
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TRAN L, Hamp T, Rost B
ProfPPIdb: Pairs of physical protein-protein interactions predicted for entire proteomes.
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HAGENAUER MH, Schulmann A, Li JZ, Vawter MP, et al
Inference of cell type content from human brain transcriptomic datasets illuminates the effects of age, manner of death, dissection, and psychiatric diagnosis.
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TEA MM, Tan YY, Staudigl C, Eibl B, et al
Improving comprehension of genetic counseling for hereditary breast and ovarian cancer clients with a visual tool.
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PISAMAI S, Roytrakul S, Phaonakrop N, Jaresitthikunchai J, et al
Proteomic analysis of canine oral tumor tissues using MALDI-TOF mass spectrometry and in-gel digestion coupled with mass spectrometry (GeLC MS/MS) approaches.
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GOSZCZYNSKI D, Molina A, Teran E, Morales-Durand H, et al
Runs of homozygosity in a selected cattle population with extremely inbred bulls: Descriptive and functional analyses revealed highly variable patterns.
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LIU W, Cheng C, Lin Y, XuHan X, et al
Genome-wide identification and characterization of mRNAs and lncRNAs involved in cold stress in the wild banana (Musa itinerans).
PLoS One. 2018;13:e0200002.
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WANG Y, Liu K, Bi, Zhou S, et al
Molecular phylogeography of East Asian Boea clarkeana (Gesneriaceae) in relation to habitat restriction.
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LAUKKANEN L, Kalske A, Muola A, Leimu R, et al
Genetic drift precluded adaptation of an insect seed predator to a novel host plant in a long-term selection experiment.
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ZHANG SY, Olasege BS, Liu DY, Wang QS, et al
The genetic connectedness calculated from genomic information and its effect on the accuracy of genomic prediction.
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TIAN X, Wang Z, Zhang Q, Ci H, et al
Genome-wide transcriptome analysis of the salt stress tolerance mechanism in Rosa chinensis.
PLoS One. 2018;13:e0200938.
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ZOLL J, Verweij PE, Melchers WJG
Discovery and characterization of novel Aspergillus fumigatus mycoviruses.
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YOO B, Greninger P, Stein GT, Egan RK, et al
Potent and selective effect of the mir-10b inhibitor MN-anti-mir10b in human cancer cells of diverse primary disease origin.
PLoS One. 2018;13:e0201046.
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MAZZEO MF, Cacace G, Iovieno P, Massarelli I, et al
Response mechanisms induced by exposure to high temperature in anthers from thermo-tolerant and thermo-sensitive tomato plants: A proteomic perspective.
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CUI K, Wang B, Zhang N, Tu Y, et al
iTRAQ-based quantitative proteomic analysis of alterations in the intestine of Hu sheep under weaning stress.
PLoS One. 2018;13:e0200680.
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CHEN C, Yan JB, Wang HL, Li P, et al
Molecular epidemiology and spatiotemporal dynamics of norovirus associated with sporadic acute gastroenteritis during 2013-2017, Zhoushan Islands, China.
PLoS One. 2018;13:e0200911.
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FEDERMAN S, Donoghue MJ, Daly DC, Eaton DAR, et al
Reconciling species diversity in a tropical plant clade (Canarium, Burseraceae).
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NIU X, Ah-Fong AMV, Lopez LA, Judelson HS, et al
Transcriptomic and proteomic analysis reveals wall-associated and glucan-degrading proteins with potential roles in Phytophthora infestans sexual spore development.
PLoS One. 2018;13:e0198186.
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WANG J, Wang J, Wang X, Li R, et al
Proteomic response of hybrid wild rice to cold stress at the seedling stage.
PLoS One. 2018;13:e0198675.
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METZ ZP, Ding T, Baumler DJ
Using genome-scale metabolic models to compare serovars of the foodborne pathogen Listeria monocytogenes.
PLoS One. 2018;13:e0198584.
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KIM J, Chen B, Bru JL, Huynh E, et al
New findings on SNP variants of human protein L-isoaspartyl methyltransferase that affect catalytic activity, thermal stability, and aggregation.
PLoS One. 2018;13:e0198266.
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KWOK E, Porter M, Korf I, Pasin G, et al
The collaborative effect of scientific meetings: A study of the International Milk Genomics Consortium.
PLoS One. 2018;13:e0201637.
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CHEN YC, Xu C, Zhang JG, Zeng CP, et al
Multivariate analysis of genomics data to identify potential pleiotropic genes for type 2 diabetes, obesity and dyslipidemia using Meta-CCA and gene-based approach.
PLoS One. 2018;13:e0201173.
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ABD EL GHANY M, Sharaf H, Al-Agamy MH, Shibl A, et al
Genomic characterization of NDM-1 and 5, and OXA-181 carbapenemases in uropathogenic Escherichia coli isolates from Riyadh, Saudi Arabia.
PLoS One. 2018;13:e0201613.
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MADDOCK J, Wulaningsih W, Fernandez JC, Ploubidis GB, et al
Associations between body size, nutrition and socioeconomic position in early life and the epigenome: A systematic review.
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SILVA GT, San Blas G, Pecanha WT, Moreira GRP, et al
Phylogeography of the gall-inducing micromoth Eucecidoses minutanus Brethes (Cecidosidae) reveals lineage diversification associated with the Neotropical Peripampasic Orogenic Arc.
PLoS One. 2018;13:e0201251.
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GODINI R, Fallahi H, Ebrahimie E
Network analysis of inflammatory responses to sepsis by neutrophils and peripheral blood mononuclear cells.
PLoS One. 2018;13:e0201674.
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RIVERA-REYES R, Kleppa MJ, Kispert A
Proteomic analysis identifies transcriptional cofactors and homeobox transcription factors as TBX18 binding proteins.
PLoS One. 2018;13:e0200964.
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MAIORANO AM, Lourenco DL, Tsuruta S, Ospina AMT, et al
Assessing genetic architecture and signatures of selection of dual purpose Gir cattle populations using genomic information.
PLoS One. 2018;13:e0200694.
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DOOLEY CT, Ferrer T, Pagan H, O'Corry-Crowe GM, et al
Bridging immunogenetics and immunoproteomics: Model positional scanning library analysis for Major Histocompatibility Complex class II DQ in Tursiops truncatus.
PLoS One. 2018;13:e0201299.
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DINIZ MRV, Paiva ALB, Guerra-Duarte C, Nishiyama MY Jr, et al
An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
PLoS One. 2018;13:e0200628.
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DAVOODI MASTAKANI F, Pagheh G, Rashidi Monfared S, Shams-Bakhsh M, et al
Identification and expression analysis of a microRNA cluster derived from pre-ribosomal RNA in Papaver somniferum L. and Papaver bracteatum L.
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KOWALIK A, Siolek M, Kopczynski J, Krawiec K, et al
BRCA1 founder mutations and beyond in the Polish population: A single-institution BRCA1/2 next-generation sequencing study.
PLoS One. 2018;13:e0201086.
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MESSINA F, Di Corcia T, Ragazzo M, Sanchez Mellado C, et al
Signs of continental ancestry in urban populations of Peru through autosomal STR loci and mitochondrial DNA typing.
PLoS One. 2018;13:e0200796.
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DE ARGOLO EGG, Reis T, Fontes DAT, Goncalves EC, et al
Canine filariasis in the Amazon: Species diversity and epidemiology of these emergent and neglected zoonoses.
PLoS One. 2018;13:e0200419.
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SEGURA-WANG M, Gorzer I, Jaksch P, Puchhammer-Stockl E, et al
Temporal dynamics of the lung and plasma viromes in lung transplant recipients.
PLoS One. 2018;13:e0200428.
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MUSA A, Tripathi S, Kandhavelu M, Dehmer M, et al
Harnessing the biological complexity of Big Data from LINCS gene expression signatures.
PLoS One. 2018;13:e0201937.
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PEREA RAZO CA, Rodriguez Hernandez E, Ponce SIR, Milian Suazo F, et al
Molecular epidemiology of cattle tuberculosis in Mexico through whole-genome sequencing and spoligotyping.
PLoS One. 2018;13:e0201981.
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BERKOVIC B, Coelho N, Gouveia L, Serrao EA, et al
Individual-based genetic analyses support asexual hydrochory dispersal in Zostera noltei.
PLoS One. 2018;13:e0199275.
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ALTAN E, Aiemjoy K, Phan TG, Deng X, et al
Enteric virome of Ethiopian children participating in a clean water intervention trial.
PLoS One. 2018;13:e0202054.
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MCDONALD M, Trost B, Napper S
Conservation of kinase-phosphorylation site pairings: Evidence for an evolutionarily dynamic phosphoproteome.
PLoS One. 2018;13:e0202036.
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CARDOSO YP, Rosso JJ, Mabragana E, Gonzalez-Castro M, et al
A continental-wide molecular approach unraveling mtDNA diversity and geographic distribution of the Neotropical genus Hoplias.
PLoS One. 2018;13:e0202024.
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HUSSAIN M, Iqbal MA, Till BJ, Rahman MU, et al
Identification of induced mutations in hexaploid wheat genome using exome capture assay.
PLoS One. 2018;13:e0201918.
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WATANABE K, Igarashi M, Li X, Nakatani A, et al
Dietary soybean protein ameliorates high-fat diet-induced obesity by modifying the gut microbiota-dependent biotransformation of bile acids.
PLoS One. 2018;13:e0202083.
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FURUZAWA-CARBALLEDA J, Zuniga J, Hernandez-Zaragoza DI, Barquera R, et al
An original Eurasian haplotype, HLA-DRB1*14:54-DQB1*05:03, influences the susceptibility to idiopathic achalasia.
PLoS One. 2018;13:e0201676.
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HUANG Z, Du CX, Pan XD
The use of in-strip digestion for fast proteomic analysis on tear fluid from dry eye patients.
PLoS One. 2018;13:e0200702.
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YANG L, Kong X, Yang S, Dong X, et al
Haplotype diversity in mitochondrial DNA reveals the multiple origins of Tibetan horse.
PLoS One. 2018;13:e0201564.
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DESOUBEAUX G, Chauvin D, Piqueras MDC, Bronson E, et al
Translational proteomic study to address host protein changes during aspergillosis.
PLoS One. 2018;13:e0200843.
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KOMATSU Y, Kasahara K, Inoue T, Lee ST, et al
Molecular epidemiology and clinical features of extended-spectrum beta-lactamase- or carbapenemase-producing Escherichia coli bacteremia in Japan.
PLoS One. 2018;13:e0202276.
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BEDDEK M, Zenboudji-Beddek S, Geniez P, Fathalla R, et al
Comparative phylogeography of amphibians and reptiles in Algeria suggests common causes for the east-west phylogeographic breaks in the Maghreb.
PLoS One. 2018;13:e0201218.
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BORBA JVVB, Tauhata SBF, Oliveira CMA, Ferreira Marques M, et al
Chemoproteomic identification of molecular targets of antifungal prototypes, thiosemicarbazide and a camphene derivative of thiosemicarbazide, in Paracoccidioides brasiliensis.
PLoS One. 2018;13:e0201948.
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SONG L, Ouedraogo JP, Kolbusz M, Nguyen TTM, et al
Efficient genome editing using tRNA promoter-driven CRISPR/Cas9 gRNA in Aspergillus niger.
PLoS One. 2018;13:e0202868.
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LEE M, Kang YS, Seok J
The estimation of probability distribution for factor variables with many categorical values.
PLoS One. 2018;13:e0202547.
PubMed Text format Abstract available

MANIN BO, Drakeley CJ, Chua TH
Mitochondrial variation in subpopulations of Anopheles balabacensis Baisas in Sabah, Malaysia (Diptera: Culicidae).
PLoS One. 2018;13:e0202905.
PubMed Text format Abstract available

CHAN RCH, Lam SSW, Fong FLY, Chan DTW, et al
Optimization of protein extraction and two-dimensional gel electrophoresis profiles for the identification of Cordyceps sinensis and other similar species.
PLoS One. 2018;13:e0202779.
PubMed Text format Abstract available

FERRELLI ML, Pidre ML, Ghiringhelli PD, Torres S, et al
Genomic analysis of an Argentinean isolate of Spodoptera frugiperda granulovirus reveals that various baculoviruses code for Lef-7 proteins with three F-box domains.
PLoS One. 2018;13:e0202598.
PubMed Text format Abstract available

GORI M, Ebranati E, Scaltriti E, Huedo P, et al
High-resolution diffusion pattern of human infections by Salmonella enterica serovar Napoli in Northern Italy explained through phylogeography.
PLoS One. 2018;13:e0202573.
PubMed Text format Abstract available

MONGIARDINO KOCH N, Gauthier JA
Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata.
PLoS One. 2018;13:e0202729.
PubMed Text format Abstract available

DUSSAQ AM, Kennell T Jr, Eustace NJ, Anderson JC, et al
Kinomics toolbox-A web platform for analysis and viewing of kinomic peptide array data.
PLoS One. 2018;13:e0202139.
PubMed Text format Abstract available

ZHANG HY, Zhao ZX, Xu J, Xu P, et al
Population genetic analysis of aquaculture salmonid populations in China using a 57K rainbow trout SNP array.
PLoS One. 2018;13:e0202582.
PubMed Text format Abstract available

HOROKHOVATSKYI Y, Dietrich MA, Lebeda I, Fedorov P, et al
Cryopreservation effects on a viable sperm sterlet (Acipenser ruthenus) subpopulation obtained by a Percoll density gradient method.
PLoS One. 2018;13:e0202514.
PubMed Text format Abstract available

WATANABE N, Kryukov K, Nakagawa S, Takeuchi JS, et al
Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis.
PLoS One. 2018;13:e0202049.
PubMed Text format Abstract available

ARROYO-LAMBAER D, Chapman H, Hale M, Blackburn D, et al
Conservation genetics of two threatened frogs from the Mambilla highlands, Nigeria.
PLoS One. 2018;13:e0202010.
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HAWLITSCHEK O, Fernandez-Gonzalez A, Balmori-de la Puente A, Castresana J, et al
A pipeline for metabarcoding and diet analysis from fecal samples developed for a small semi-aquatic mammal.
PLoS One. 2018;13:e0201763.
PubMed Text format Abstract available

EATON KR, Loxterman JL, Keeley ER
Connections and containers: Using genetic data to understand how watershed evolution and human activities influence cutthroat trout biogeography.
PLoS One. 2018;13:e0202043.
PubMed Text format Abstract available

ZHOU Y, Zhu J, Zhao M, Zhang B, et al
Methylation-level inferences and detection of differential methylation with MeDIP-seq data.
PLoS One. 2018;13:e0201586.
PubMed Text format Abstract available

MA B, Chen J, Mu Y, Xue B, et al
Proteomic analysis of rat serum revealed the effects of chronic sleep deprivation on metabolic, cardiovascular and nervous system.
PLoS One. 2018;13:e0199237.
PubMed Text format Abstract available

SUKAL AC, Kidanemariam DB, Dale JL, Harding RM, et al
Characterization of a novel member of the family Caulimoviridae infecting Dioscorea nummularia in the Pacific, which may represent a new genus of dsDNA plant viruses.
PLoS One. 2018;13:e0203038.
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BOVO S, Di Luca A, Galimberti G, Dall'Olio S, et al
A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds.
PLoS One. 2018;13:e0199649.
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XU BH, Lu YQ, Ye ZW, Zheng QW, et al
Genomics-guided discovery and structure identification of cyclic lipopeptides from the Bacillus siamensis JFL15.
PLoS One. 2018;13:e0202893.
PubMed Text format Abstract available

VALENCIA-MENDEZ O, Rodriguez-Zaragoza FA, Calderon-Aguilera LE, Dominguez-Dominguez O, et al
Gamma-diversity partitioning of gobiid fishes (Teleostei: Gobiidae) ensemble along of Eastern Tropical Pacific: Biological inventory, latitudinal variation and species turnover.
PLoS One. 2018;13:e0202863.
PubMed Text format Abstract available

ALAM M, Neal J, O'Connor K, Kilian A, et al
Ultra-high-throughput DArTseq-based silicoDArT and SNP markers for genomic studies in macadamia.
PLoS One. 2018;13:e0203465.
PubMed Text format Abstract available

YU D, He J, Zhang E, Wang P, et al
Investigation and source-tracing of an anthrax outbreak in Gansu Province, China.
PLoS One. 2018;13:e0203267.
PubMed Text format Abstract available

CURRAN AM, Scott-Boyer MP, Kaput J, Ryan MF, et al
A proteomic signature that reflects pancreatic beta-cell function.
PLoS One. 2018;13:e0202727.
PubMed Text format Abstract available

JIMENEZ-SILVA CL, Carreno MF, Ortiz-Baez AS, Rey LA, et al
Evolutionary history and spatio-temporal dynamics of dengue virus serotypes in an endemic region of Colombia.
PLoS One. 2018;13:e0203090.
PubMed Text format Abstract available

PULIDO CM, Redondo-Sama G, Sorde-Marti T, Flecha R, et al
Social impact in social media: A new method to evaluate the social impact of research.
PLoS One. 2018;13:e0203117.
PubMed Text format Abstract available

LI X, Cui L, Li Y, Zhu L, et al
Prevalence and geographical variation of Factor V Leiden in patients with cerebral venous thrombosis: A meta-analysis.
PLoS One. 2018;13:e0203309.
PubMed Text format Abstract available

SYLVESTRE TF, Cavalcante RS, da Silva JF, Paniago AMM, et al
Serological proteomic biomarkers to identify Paracoccidioides species and risk of relapse.
PLoS One. 2018;13:e0202804.
PubMed Text format Abstract available

ZINNER D, Atickem A, Beehner JC, Bekele A, et al
Phylogeography, mitochondrial DNA diversity, and demographic history of geladas (Theropithecus gelada).
PLoS One. 2018;13:e0202303.
PubMed Text format Abstract available

SWIERCZ A, Frohmberg W, Kierzynka M, Wojciechowski P, et al
GRASShopPER-An algorithm for de novo assembly based on GPU alignments.
PLoS One. 2018;13:e0202355.
PubMed Text format Abstract available

BAHBAHANI H, Afana A, Wragg D
Genomic signatures of adaptive introgression and environmental adaptation in the Sheko cattle of southwest Ethiopia.
PLoS One. 2018;13:e0202479.
PubMed Text format Abstract available

KIM J, Kwak HR, Kim M, Seo JK, et al
Phylogeographic analysis of the full genome of Sweepovirus to trace virus dispersal and introduction to Korea.
PLoS One. 2018;13:e0202174.
PubMed Text format Abstract available

BOSSE M, Heuwieser A, Heinzel A, Lukas A, et al
Biomarker panels for characterizing microbial community biofilm formation as composite molecular process.
PLoS One. 2018;13:e0202032.
PubMed Text format Abstract available

NAGORSKI J, Allen GI
Genomic region detection via Spatial Convex Clustering.
PLoS One. 2018;13:e0203007.
PubMed Text format Abstract available

BIENKOWSKI AO, Orlova-Bienkowskaja MJ
Alien leaf beetles (Coleoptera, Chrysomelidae) of European Russia and some general tendencies of leaf beetle invasions.
PLoS One. 2018;13:e0203561.
PubMed Text format Abstract available

ALBASSAM A, Alshammari S, Ouda G, Koshy S, et al
Knowledge, perceptions and confidence of physicians and pharmacists towards pharmacogenetics practice in Kuwait.
PLoS One. 2018;13:e0203033.
PubMed Text format Abstract available

PETRONE P, Pucci P, Vergara A, Amoresano A, et al
A hypothesis of sudden body fluid vaporization in the 79 AD victims of Vesuvius.
PLoS One. 2018;13:e0203210.
PubMed Text format Abstract available

MICHALOUDI E, Papakostas S, Stamou G, Nedela V, et al
Reverse taxonomy applied to the Brachionus calyciflorus cryptic species complex: Morphometric analysis confirms species delimitations revealed by molecular phylogenetic analysis and allows the (re)description of four species.
PLoS One. 2018;13:e0203168.
PubMed Text format Abstract available

LAU AYT, Cheng X, Cheng CK, Nong W, et al
Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea.
PLoS One. 2018;13:e0198234.
PubMed Text format Abstract available

ROMA L, Cozzolino S, Schluter PM, Scopece G, et al
The complete plastid genomes of Ophrys iricolor and O. sphegodes (Orchidaceae) and comparative analyses with other orchids.
PLoS One. 2018;13:e0204174.
PubMed Text format Abstract available

JAFARI M, Akram W, Pang Y, Ahmad A, et al
Genetic diversity and biogeography of T. officinale inferred from multi locus sequence typing approach.
PLoS One. 2018;13:e0203275.
PubMed Text format Abstract available

MEKONNEN A, Merker M, Collins JM, Addise D, et al
Molecular epidemiology and drug resistance patterns of Mycobacterium tuberculosis complex isolates from university students and the local community in Eastern Ethiopia.
PLoS One. 2018;13:e0198054.
PubMed Text format Abstract available

OBODAI E, Odoom JK, Adiku T, Goka B, et al
The significance of human respiratory syncytial virus (HRSV) in children from Ghana with acute lower respiratory tract infection: A molecular epidemiological analysis, 2006 and 2013-2014.
PLoS One. 2018;13:e0203788.
PubMed Text format Abstract available

LI B, Liao HM, Liu H, Tsai S, et al
Comparative genomics, infectivity and cytopathogenicity of Zika viruses produced by acutely and persistently infected human hematopoietic cell lines.
PLoS One. 2018;13:e0203331.
PubMed Text format Abstract available

SHARMA R, Singh G, Bhattacharya S, Singh A, et al
Comparative transcriptome meta-analysis of Arabidopsis thaliana under drought and cold stress.
PLoS One. 2018;13:e0203266.
PubMed Text format Abstract available

SIOOFY-KHOJINE AB, Oikarinen S, Honkanen H, Huhtala H, et al
Molecular epidemiology of enteroviruses in young children at increased risk of type 1 diabetes.
PLoS One. 2018;13:e0201959.
PubMed Text format Abstract available

HIBBARD TN, Andrade-Diaz MS, Diaz-Gomez JM
But they move! Vicariance and dispersal in southern South America: Using two methods to reconstruct the biogeography of a clade of lizards endemic to South America.
PLoS One. 2018;13:e0202339.
PubMed Text format Abstract available

YILDIRIM Y, Anderson MJ, Hansson B, Patel S, et al
Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand.
PLoS One. 2018;13:e0202197.
PubMed Text format Abstract available

OUCHENE-KHELIFI NA, Lafri M, Pompanon F, Ouhrouch A, et al
Genetic homogeneity of North-African goats.
PLoS One. 2018;13:e0202196.
PubMed Text format Abstract available

WHAITE AD, Wang T, Macdonald J, Cummins SF, et al
Major ampullate silk gland transcriptomes and fibre proteomes of the golden orb-weavers, Nephila plumipes and Nephila pilipes (Araneae: Nephilidae).
PLoS One. 2018;13:e0204243.
PubMed Text format Abstract available

TROST N, Rempel E, Ermakova O, Tamirisa S, et al
WEADE: A workflow for enrichment analysis and data exploration.
PLoS One. 2018;13:e0204016.
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KAVUNGA-MEMBO H, Nkwembe E, Simulundu E, Karhemere S, et al
Epidemiology of circulating human influenza viruses from the Democratic Republic of Congo, 2015.
PLoS One. 2018;13:e0203995.
PubMed Text format Abstract available

VALDES A, Zhao H, Pettersson U, Lind SB, et al
Time-resolved proteomics of adenovirus infected cells.
PLoS One. 2018;13:e0204522.
PubMed Text format Abstract available

HUANG QF, Van Keer J, Zhang ZY, Trenson S, et al
Urinary proteomic signatures associated with beta-blockade and heart rate in heart transplant recipients.
PLoS One. 2018;13:e0204439.
PubMed Text format Abstract available

HU T, Wei Q, Wang W, Hu H, et al
Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus).
PLoS One. 2018;13:e0204137.
PubMed Text format Abstract available

KUROBE T, Lehman PW, Hammock BG, Bolotaolo MB, et al
Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA.
PLoS One. 2018;13:e0203953.
PubMed Text format Abstract available

CHEN P, He G, Zou X, Wang M, et al
Forensic characterization and genetic polymorphisms of 19 X-chromosomal STRs in 1344 Han Chinese individuals and comprehensive population relationship analyses among 20 Chinese groups.
PLoS One. 2018;13:e0204286.
PubMed Text format Abstract available

PILIPENKO AS, Trapezov RO, Cherdantsev SV, Babenko VN, et al
Maternal genetic features of the Iron Age Tagar population from Southern Siberia (1st millennium BC).
PLoS One. 2018;13:e0204062.
PubMed Text format Abstract available

SARI E, Bhadauria V, Ramsay L, Borhan MH, et al
Defense responses of lentil (Lens culinaris) genotypes carrying non-allelic ascochyta blight resistance genes to Ascochyta lentis infection.
PLoS One. 2018;13:e0204124.
PubMed Text format Abstract available

LIM JH, Lee CH, Kim KY, Jung HY, et al
Novel urinary exosomal biomarkers of acute T cell-mediated rejection in kidney transplant recipients: A cross-sectional study.
PLoS One. 2018;13:e0204204.
PubMed Text format Abstract available

YOON SH, Lee W, Ahn H, Caetano-Anolles K, et al
Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives.
PLoS One. 2018;13:e0203917.
PubMed Text format Abstract available

MENDOZA Y, Garcia-Morales C, Bello G, Garrido-Rodriguez D, et al
Evolutionary history and spatiotemporal dynamics of the HIV-1 subtype B epidemic in Guatemala.
PLoS One. 2018;13:e0203916.
PubMed Text format Abstract available

ASHRAFZADEH MR, Djan M, Szendrei L, Paulauskas A, et al
Large-scale mitochondrial DNA analysis reveals new light on the phylogeography of Central and Eastern-European Brown hare (Lepus europaeus Pallas, 1778).
PLoS One. 2018;13:e0204653.
PubMed Text format Abstract available

IM JH, Lazzaro BP
Population genetic analysis of autophagy and phagocytosis genes in Drosophila melanogaster and D. simulans.
PLoS One. 2018;13:e0205024.
PubMed Text format Abstract available

GOKMEN-POLAR Y, True JD, Vieth E, Gu Y, et al
Quantitative phosphoproteomic analysis identifies novel functional pathways of tumor suppressor DLC1 in estrogen receptor positive breast cancer.
PLoS One. 2018;13:e0204658.
PubMed Text format Abstract available

STRILLACCI MG, Gorla E, Cozzi MC, Vevey M, et al
A copy number variant scan in the autochthonous Valdostana Red Pied cattle breed and comparison with specialized dairy populations.
PLoS One. 2018;13:e0204669.
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January 2017

WEI HS, Li KB, Zhang S, Cao YZ, et al
Identification of candidate chemosensory genes by transcriptome analysis in Loxostege sticticalis Linnaeus.
PLoS One. 2017;12:e0174036.
PubMed Text format Abstract available

BENNETT EA, Champlot S, Peters J, Arbuckle BS, et al
Taming the late Quaternary phylogeography of the Eurasiatic wild ass through ancient and modern DNA.
PLoS One. 2017;12:e0174216.
PubMed Text format Abstract available

KANT R, Palva A, von Ossowski I
An in silico pan-genomic probe for the molecular traits behind Lactobacillus ruminis gut autochthony.
PLoS One. 2017;12:e0175541.
PubMed Text format Abstract available

MIRANDA EA, Ferreira KM, Carvalho AT, Martins CF, et al
Pleistocene climate changes shaped the population structure of Partamona seridoensis (Apidae, Meliponini), an endemic stingless bee from the Neotropical dry forest.
PLoS One. 2017;12:e0175725.
PubMed Text format Abstract available

HITZ BC, Rowe LD, Podduturi NR, Glick DI, et al
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
PLoS One. 2017;12:e0175310.
PubMed Text format Abstract available

PARDESHI P, Rao KK, Balaji PV
Rv3634c from Mycobacterium tuberculosis H37Rv encodes an enzyme with UDP-Gal/Glc and UDP-GalNAc 4-epimerase activities.
PLoS One. 2017;12:e0175193.
PubMed Text format Abstract available

CARVAJAL-RODRIGUEZ A
HacDivSel: Two new methods (haplotype-based and outlier-based) for the detection of divergent selection in pairs of populations.
PLoS One. 2017;12:e0175944.
PubMed Text format Abstract available

SPONCHIADO M, Gomes NS, Fontes PK, Martins T, et al
Pre-hatching embryo-dependent and -independent programming of endometrial function in cattle.
PLoS One. 2017;12:e0175954.
PubMed Text format Abstract available

DE CARVALHO DB, Congrains C, Chahad-Ehlers S, Pinotti H, et al
Differential transcriptome analysis supports Rhodnius montenegrensis and Rhodnius robustus (Hemiptera, Reduviidae, Triatominae) as distinct species.
PLoS One. 2017;12:e0174997.
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PASSAMANI LZ, Barbosa RR, Reis RS, Heringer AS, et al
Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots.
PLoS One. 2017;12:e0176076.
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DAGAMAC NHA, Rojas C, Novozhilov YK, Moreno GH, et al
Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes).
PLoS One. 2017;12:e0174825.
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BEN-LULU S, Ziv T, Weisman-Shomer P, Benhar M, et al
Nitrosothiol-Trapping-Based Proteomic Analysis of S-Nitrosylation in Human Lung Carcinoma Cells.
PLoS One. 2017;12:e0169862.
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FRUZANGOHAR M, Ebrahimie E, Adelson DL
A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data.
PLoS One. 2017;12:e0170486.
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NKUIPOU-KENFACK E, Schanstra JP, Bajwa S, Pejchinovski M, et al
The use of urinary proteomics in the assessment of suitability of mouse models for ageing.
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KIRICHENKO N, Triberti P, Ohshima I, Haran J, et al
From east to west across the Palearctic: Phylogeography of the invasive lime leaf miner Phyllonorycter issikii (Lepidoptera: Gracillariidae) and discovery of a putative new cryptic species in East Asia.
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PEREZ T, Fernandez M, Hammer SE, Dominguez A, et al
Multilocus Intron Trees Reveal Extensive Male-Biased Homogenization of Ancient Populations of Chamois (Rupicapra spp.) across Europe during Late Pleistocene.
PLoS One. 2017;12:e0170392.
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TRAYKOVA D, Schneider B, Chojkier M, Buck M, et al
Blood Microbiome Quantity and the Hyperdynamic Circulation in Decompensated Cirrhotic Patients.
PLoS One. 2017;12:e0169310.
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SAGULENKO E, Nouwens A, Webb RI, Green K, et al
Nuclear Pore-Like Structures in a Compartmentalized Bacterium.
PLoS One. 2017;12:e0169432.
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ANGULO DF, Amarilla LD, Anton AM, Sosa V, et al
Colonization in North American Arid Lands: The Journey of Agarito (Berberis trifoliolata) Revealed by Multilocus Molecular Data and Packrat Midden Fossil Remains.
PLoS One. 2017;12:e0168933.
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PORTE B, Chatelain C, Hardouin J, Derambure C, et al
Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice.
PLoS One. 2017;12:e0171048.
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NANDAN D, Thomas SA, Nguyen A, Moon KM, et al
Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture.
PLoS One. 2017;12:e0170068.
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MSALYA G, Kim ES, Laisser EL, Kipanyula MJ, et al
Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses.
PLoS One. 2017;12:e0171088.
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VOROS J, Marton O, Schmidt BR, Gal JT, et al
Surveying Europe's Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA.
PLoS One. 2017;12:e0170945.
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DOS SANTOS MD, Kretschmer R, Frankl-Vilches C, Bakker A, et al
Comparative Cytogenetics between Two Important Songbird, Models: The Zebra Finch and the Canary.
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O'FARRELL AC, Evans R, Silvola JM, Miller IS, et al
A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate.
PLoS One. 2017;12:e0169964.
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LUND KT, Riaz S, Walker MA
Population Structure, Diversity and Reproductive Mode of the Grape Phylloxera (Daktulosphaira vitifoliae) across Its Native Range.
PLoS One. 2017;12:e0170678.
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YOTOVA I, Hsu E, Do C, Gaba A, et al
Epigenetic Alterations Affecting Transcription Factors and Signaling Pathways in Stromal Cells of Endometriosis.
PLoS One. 2017;12:e0170859.
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FU Y, Xu X, Xue J, Duan W, et al
Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis.
PLoS One. 2017;12:e0170712.
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ESCORIZA D, Ben Hassine J
Diversity of Guilds of Amphibian Larvae in North-Western Africa.
PLoS One. 2017;12:e0170763.
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TSURUTA SI, Ebina M, Kobayashi M, Takahashi W, et al
Complete Chloroplast Genomes of Erianthus arundinaceus and Miscanthus sinensis: Comparative Genomics and Evolution of the Saccharum Complex.
PLoS One. 2017;12:e0169992.
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CHEN Z, Li Z, Zhuang R, Yuan Y, et al
Adaptive Estimation of Personalized Maximum Tolerated Dose in Cancer Phase I Clinical Trials Based on All Toxicities and Individual Genomic Profile.
PLoS One. 2017;12:e0170187.
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CHA S, Srinivasan S, Jang JH, Lee D, et al
Metagenomic Analysis of Airborne Bacterial Community and Diversity in Seoul, Korea, during December 2014, Asian Dust Event.
PLoS One. 2017;12:e0170693.
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HWANG J, Park SY, Park M, Lee S, et al
Seasonal Dynamics and Metagenomic Characterization of Marine Viruses in Goseong Bay, Korea.
PLoS One. 2017;12:e0169841.
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NIU R, Liu Y, Zhang Y, Zhang Y, et al
iTRAQ-Based Proteomics Reveals Novel Biomarkers for Idiopathic Pulmonary Fibrosis.
PLoS One. 2017;12:e0170741.
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HELWA I, Cai J, Drewry MD, Zimmerman A, et al
A Comparative Study of Serum Exosome Isolation Using Differential Ultracentrifugation and Three Commercial Reagents.
PLoS One. 2017;12:e0170628.
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DE VRIES PS, Sabater-Lleal M, Chasman DI, Trompet S, et al
Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.
PLoS One. 2017;12:e0167742.
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HALLER T, Leitsalu L, Fischer K, Nuotio ML, et al
MixFit: Methodology for Computing Ancestry-Related Genetic Scores at the Individual Level and Its Application to the Estonian and Finnish Population Studies.
PLoS One. 2017;12:e0170325.
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SIRIPHAP A, Leekitcharoenphon P, Kaas RS, Theethakaew C, et al
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.
PLoS One. 2017;12:e0169324.
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CHERIFI YA, Gaouar SB, Guastamacchia R, El-Bahrawy KA, et al
Weak Genetic Structure in Northern African Dromedary Camels Reflects Their Unique Evolutionary History.
PLoS One. 2017;12:e0168672.
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GONZALEZ-WEVAR CA, Nakano T, Palma A, Poulin E, et al
Biogeography in Cellana (Patellogastropoda, Nacellidae) with Special Emphasis on the Relationships of Southern Hemisphere Oceanic Island Species.
PLoS One. 2017;12:e0170103.
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STEBNER F, Szadziewski R, Singh H, Gunkel S, et al
Biting Midges (Diptera: Ceratopogonidae) from Cambay Amber Indicate that the Eocene Fauna of the Indian Subcontinent Was Not Isolated.
PLoS One. 2017;12:e0169144.
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YE X, Liu H, Jin Y, Guo M, et al
Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection.
PLoS One. 2017;12:e0169598.
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MANICKAVELU A, Hattori T, Yamaoka S, Yoshimura K, et al
Genetic Nature of Elemental Contents in Wheat Grains and Its Genomic Prediction: Toward the Effective Use of Wheat Landraces from Afghanistan.
PLoS One. 2017;12:e0169416.
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PRIYAMVADA H, Akila M, Singh RK, Ravikrishna R, et al
Terrestrial Macrofungal Diversity from the Tropical Dry Evergreen Biome of Southern India and Its Potential Role in Aerobiology.
PLoS One. 2017;12:e0169333.
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AGULLO L, Romero-Silva MJ, Domenech M, Seeger M, et al
p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.
PLoS One. 2017;12:e0169544.
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HATOUM D, Yagoub D, Ahadi A, Nassif NT, et al
Annexin/S100A Protein Family Regulation through p14ARF-p53 Activation: A Role in Cell Survival and Predicting Treatment Outcomes in Breast Cancer.
PLoS One. 2017;12:e0169925.
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WEN HB, Cao ZM, Hua D, Xu P, et al
The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae).
PLoS One. 2017;12:e0169749.
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VIRK RK, Gunalan V, Lee HK, Inoue M, et al
Molecular Evidence of Transmission of Influenza A/H1N1 2009 on a University Campus.
PLoS One. 2017;12:e0168596.
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STROJAN K, Leonardi A, Bregar VB, Krizaj I, et al
Dispersion of Nanoparticles in Different Media Importantly Determines the Composition of Their Protein Corona.
PLoS One. 2017;12:e0169552.
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SIEGWALD L, Touzet H, Lemoine Y, Hot D, et al
Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.
PLoS One. 2017;12:e0169563.
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SCHNEIDER A, Matkovich SJ, Victoria B, Spinel L, et al
Changes of Ovarian microRNA Profile in Long-Living Ames Dwarf Mice during Aging.
PLoS One. 2017;12:e0169213.
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ASOR E, Stav MY, Simon E, Fahoum I, et al
Risk for molecular contamination of tissue samples evaluated for targeted anti-cancer therapy.
PLoS One. 2017;12:e0173760.
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KNITLOVA M, Horacek I
Late Pleistocene-Holocene paleobiogeography of the genus Apodemus in Central Europe.
PLoS One. 2017;12:e0173668.
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VARDI O, Shamir I, Javasky E, Goren A, et al
Biases in the SMART-DNA library preparation method associated with genomic poly dA/dT sequences.
PLoS One. 2017;12:e0172769.
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FORTI LR, Lingnau R, Encarnacao LC, Bertoluci J, et al
Can treefrog phylogeographical clades and species' phylogenetic topologies be recovered by bioacoustical analyses?
PLoS One. 2017;12:e0169911.
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PELLETIER A, Obbard ME, Harnden M, McConnell S, et al
Determining causes of genetic isolation in a large carnivore (Ursus americanus) population to direct contemporary conservation measures.
PLoS One. 2017;12:e0172319.
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SHEVCHENKO A, Yang Y, Knaust A, Verbavatz JM, et al
Open sesame: Identification of sesame oil and oil soot ink in organic deposits of Tang Dynasty lamps from Astana necropolis in China.
PLoS One. 2017;12:e0158636.
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VEGA-CABRERA LA, Guerrero A, Rodriguez-Mejia JL, Tabche ML, et al
Analysis of Spo0M function in Bacillus subtilis.
PLoS One. 2017;12:e0172737.
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GONZALEZ AV, Santelices B
Frequency of chimerism in populations of the kelp Lessonia spicata in central Chile.
PLoS One. 2017;12:e0169182.
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UR REHMAN H, Azam N, Yao J, Benso A, et al
A three-way approach for protein function classification.
PLoS One. 2017;12:e0171702.
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KUZNIAR A, Laffeber C, Eppink B, Bezstarosti K, et al
Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields.
PLoS One. 2017;12:e0170762.
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CHO YE, Im EJ, Moon PG, Mezey E, et al
Increased liver-specific proteins in circulating extracellular vesicles as potential biomarkers for drug- and alcohol-induced liver injury.
PLoS One. 2017;12:e0172463.
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IJAZ UZ, Quince C, Hanske L, Loman N, et al
The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
PLoS One. 2017;12:e0172605.
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LI S, Li D, Zhao X, Wang Y, et al
A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken.
PLoS One. 2017;12:e0172211.
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QIN L, Liu X, Liu S, Liu Y, et al
Differentially expressed proteins underlying childhood cortical dysplasia with epilepsy identified by iTRAQ proteomic profiling.
PLoS One. 2017;12:e0172214.
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DUAN X, Wang K, Su S, Tian R, et al
De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae).
PLoS One. 2017;12:e0172513.
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LU X, Kang X, Liu Y, Cui Z, et al
HIV-1 molecular epidemiology among newly diagnosed HIV-1 individuals in Hebei, a low HIV prevalence province in China.
PLoS One. 2017;12:e0171481.
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TAYABALI AF, Coleman G, Crosthwait J, Nguyen KC, et al
Composition and pathogenic potential of a microbial bioremediation product used for crude oil degradation.
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LIMA DF, de Lima LI, Rocha JA, de Andrade IM, et al
Seasonal change in main alkaloids of jaborandi (Pilocarpus microphyllus Stapf ex Wardleworth), an economically important species from the Brazilian flora.
PLoS One. 2017;12:e0170281.
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WAIHO K, Fazhan H, Shahreza MS, Moh JH, et al
Transcriptome Analysis and Differential Gene Expression on the Testis of Orange Mud Crab, Scylla olivacea, during Sexual Maturation.
PLoS One. 2017;12:e0171095.
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ZHANG X, Mu Y, Mu P, Ao J, et al
Transcriptome Analysis Reveals Comprehensive Insights into the Early Immune Response of Large Yellow Croaker (Larimichthys crocea) Induced by Trivalent Bacterial Vaccine.
PLoS One. 2017;12:e0170958.
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N'DIAYE A, Haile JK, Cory AT, Clarke FR, et al
Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.
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ANGELONE-ALASAAD S, Biebach I, Perez JM, Soriguer RC, et al
Molecular Analyses Reveal Unexpected Genetic Structure in Iberian Ibex Populations.
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SOLLANEK KJ, Burniston JG, Kavazis AN, Morton AB, et al
Global Proteome Changes in the Rat Diaphragm Induced by Endurance Exercise Training.
PLoS One. 2017;12:e0171007.
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HUANG X, Zang X, Wu F, Jin Y, et al
Transcriptome Sequencing of Gracilariopsis lemaneiformis to Analyze the Genes Related to Optically Active Phycoerythrin Synthesis.
PLoS One. 2017;12:e0170855.
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ZHANG D, Xia X, Wang X, Zhang P, et al
PGRMC1 Is a Novel Potential Tumor Biomarker of Human Renal Cell Carcinoma Based on Quantitative Proteomic and Integrative Biological Assessments.
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PANTOJA-MELENDEZ CA, Miranda-Duarte A, Roque-Ramirez B, Zenteno JC, et al
Epidemiological and Molecular Characterization of a Mexican Population Isolate with High Prevalence of Limb-Girdle Muscular Dystrophy Type 2A Due to a Novel Calpain-3 Mutation.
PLoS One. 2017;12:e0170280.
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RODRIGUES RT, Chizzotti ML, Vital CE, Baracat-Pereira MC, et al
Differences in Beef Quality between Angus (Bos taurus taurus) and Nellore (Bos taurus indicus) Cattle through a Proteomic and Phosphoproteomic Approach.
PLoS One. 2017;12:e0170294.
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CHO IT, Lim Y, Golden JA, Cho G, et al
Aristaless Related Homeobox (ARX) Interacts with beta-Catenin, BCL9, and P300 to Regulate Canonical Wnt Signaling.
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HJELMSO MH, Hellmer M, Fernandez-Cassi X, Timoneda N, et al
Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing.
PLoS One. 2017;12:e0170199.
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HE C, Fu J, Zhang J, Li Y, et al
A Gene-Oriented Haplotype Comparison Reveals Recently Selected Genomic Regions in Temperate and Tropical Maize Germplasm.
PLoS One. 2017;12:e0169806.
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VOLLMERS J, Wiegand S, Kaster AK
Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!
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VESTY A, Biswas K, Taylor MW, Gear K, et al
Evaluating the Impact of DNA Extraction Method on the Representation of Human Oral Bacterial and Fungal Communities.
PLoS One. 2017;12:e0169877.
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YANG Y, Lian S, Meng L, Qu L, et al
Antibody Array Revealed PRL-3 Affects Protein Phosphorylation and Cytokine Secretion.
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GELIN P, Fauvelot C, Mehn V, Bureau S, et al
Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type beta in Reunion Island, South Western Indian Ocean.
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GUARINO MP, Altomare A, Barera S, Locato V, et al
Effect of Inulin on Proteome Changes Induced by Pathogenic Lipopolysaccharide in Human Colon.
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BIAZZI E, Nazzicari N, Pecetti L, Brummer EC, et al
Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits.
PLoS One. 2017;12:e0169234.
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ORTIZ ME, Bleckwedel J, Fadda S, Picariello G, et al
Global Analysis of Mannitol 2-Dehydrogenase in Lactobacillus reuteri CRL 1101 during Mannitol Production through Enzymatic, Genetic and Proteomic Approaches.
PLoS One. 2017;12:e0169441.
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HAN Z, Kautto L, Nevalainen H
Secretion of Proteases by an Opportunistic Fungal Pathogen Scedosporium aurantiacum.
PLoS One. 2017;12:e0169403.
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HOFF ML, Fabrizius A, Czech-Damal NU, Folkow LP, et al
Transcriptome Analysis Identifies Key Metabolic Changes in the Hooded Seal (Cystophora cristata) Brain in Response to Hypoxia and Reoxygenation.
PLoS One. 2017;12:e0169366.
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KUO HW, Shih CL, Tsung JH, Liu SW, et al
Pharmacogenomics study on cadherin 2 network with regard to HIV infection and methadone treatment outcome.
PLoS One. 2017;12:e0174647.
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QIN Y, Djabou AS, An F, Li K, et al
Proteomic analysis of injured storage roots in cassava (Manihot esculenta Crantz) under postharvest physiological deterioration.
PLoS One. 2017;12:e0174238.
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ARMERO A, Baudouin L, Bocs S, This D, et al
Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.
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EIRIN A, Zhu XY, Puranik AS, Woollard JR, et al
Integrated transcriptomic and proteomic analysis of the molecular cargo of extracellular vesicles derived from porcine adipose tissue-derived mesenchymal stem cells.
PLoS One. 2017;12:e0174303.
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HOLMILA R, Sklias A, Muller DC, Degli Esposti D, et al
Targeted deep sequencing of plasma circulating cell-free DNA reveals Vimentin and Fibulin 1 as potential epigenetic biomarkers for hepatocellular carcinoma.
PLoS One. 2017;12:e0174265.
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LOWDON RF, Wang T
Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancer.
PLoS One. 2017;12:e0174032.
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NAGA PRASAD SV, Gupta MK, Duan ZH, Surampudi VS, et al
A unique microRNA profile in end-stage heart failure indicates alterations in specific cardiovascular signaling networks.
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GUAYASAMIN JM, Hutter CR, Tapia EE, Culebras J, et al
Diversification of the rainfrog Pristimantis ornatissimus in the lowlands and Andean foothills of Ecuador.
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MCDOUGALL CA, Welsh AB, Gosselin T, Anderson WG, et al
Rethinking the influence of hydroelectric development on gene flow in a long-lived fish, the Lake Sturgeon Acipenser fulvescens.
PLoS One. 2017;12:e0174269.
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GANTUZ M, Lorenzetti MA, Chabay PA, Preciado MV, et al
A novel recombinant variant of latent membrane protein 1 from Epstein Barr virus in Argentina denotes phylogeographical association.
PLoS One. 2017;12:e0174221.
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QI H, Song K, Li C, Wang W, et al
Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas).
PLoS One. 2017;12:e0174007.
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HATTHAKAROON C, Pharkjaksu S, Chongtrakool P, Suwannakarn K, et al
Molecular epidemiology of cryptococcal genotype VNIc/ST5 in Siriraj Hospital, Thailand.
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CHI W, Gao Y, Hu Q, Guo W, et al
Genome-wide analysis of brain and gonad transcripts reveals changes of key sex reversal-related genes expression and signaling pathways in three stages of Monopterus albus.
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CHEN PC, Shih CH, Chu TJ, Lee YC, et al
Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia.
PLoS One. 2017;12:e0173490.
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HE S, Wang H, Liu R, He M, et al
mRNA N6-methyladenosine methylation of postnatal liver development in pig.
PLoS One. 2017;12:e0173421.
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PFEIFFER W, Braun J, Burchell J, Witte CL, et al
Whole-genome analysis of mycobacteria from birds at the San Diego Zoo.
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KANG Z, Zhang X, Ding S, Tang C, et al
Transcriptomes of three species of Tipuloidea (Diptera, Tipulomorpha) and implications for phylogeny of Tipulomorpha.
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ZHOU T, Souzeau E, Sharma S, Landers J, et al
Whole exome sequencing implicates eye development, the unfolded protein response and plasma membrane homeostasis in primary open-angle glaucoma.
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POLLEGIONI P, Woeste K, Chiocchini F, Del Lungo S, et al
Rethinking the history of common walnut (Juglans regia L.) in Europe: Its origins and human interactions.
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ELDRIDGE MD, Miller EJ, Neaves LE, Zenger KR, et al
Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii).
PLoS One. 2017;12:e0172777.
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LI R, Chen D, Wang T, Wan Y, et al
High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba).
PLoS One. 2017;12:e0172883.
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MUNOZ S, Guerrero FD, Kellogg A, Heekin AM, et al
Bioinformatic prediction of G protein-coupled receptor encoding sequences from the transcriptome of the foreleg, including the Haller's organ, of the cattle tick, Rhipicephalus australis.
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RUDQVIST N, Spetz J, Schuler E, Parris TZ, et al
Transcriptional response to 131I exposure of rat thyroid gland.
PLoS One. 2017;12:e0171797.
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ZHU C, Pan Z, Wang H, Chang G, et al
De novo assembly, characterization and annotation for the transcriptome of Sarcocheilichthys sinensis.
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RIZWAN M, Aslam M, Asghar MJ, Abbas G, et al
Pre-breeding of lentil (Lens culinaris Medik.) for herbicide resistance through seed mutagenesis.
PLoS One. 2017;12:e0171846.
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WU B, Hu Y, Huo P, Zhang Q, et al
Transcriptome analysis of hexaploid hulless oat in response to salinity stress.
PLoS One. 2017;12:e0171451.
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ZYCH K, Snoek BL, Elvin M, Rodriguez M, et al
reGenotyper: Detecting mislabeled samples in genetic data.
PLoS One. 2017;12:e0171324.
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BACKMAN TW, Evans DS, Girke T
Large-scale bioactivity analysis of the small-molecule assayed proteome.
PLoS One. 2017;12:e0171413.
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MASSAFRA V, Milona A, Vos HR, Burgering BM, et al
Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation.
PLoS One. 2017;12:e0171185.
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OMIDVAR V, Mohorianu I, Dalmay T, Zheng Y, et al
Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant.
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BAI S, Chen H, Zhu L, Liu W, et al
Comparative study on the in vitro effects of Pseudomonas aeruginosa and seaweed alginates on human gut microbiota.
PLoS One. 2017;12:e0171576.
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YANG MQ, Li DZ, Wen J, Yi TS, et al
Phylogeny and biogeography of the amphi-Pacific genus Aphananthe.
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POLANSKI A, Szczesna A, Garbulowski M, Kimmel M, et al
Coalescence computations for large samples drawn from populations of time-varying sizes.
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COX MJ, Turek EM, Hennessy C, Mirza GK, et al
Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients.
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VON SALTZWEDEL H, Scheu S, Schaefer I
Genetic structure and distribution of Parisotoma notabilis (Collembola) in Europe: Cryptic diversity, split of lineages and colonization patterns.
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REYNAUD Y, Zheng C, Wu G, Sun Q, et al
Bayesian population structure analysis reveals presence of phylogeographically specific sublineages within previously ill-defined T group of Mycobacterium tuberculosis.
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HUANG N, Wang W, Yao Y, Zhu F, et al
The influence of different concentrations of bio-organic fertilizer on cucumber Fusarium wilt and soil microflora alterations.
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ZOU Z, Liu J, Yang L, Xie G, et al
Survey of the rubber tree genome reveals a high number of cysteine protease-encoding genes homologous to Arabidopsis SAG12.
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VAN GOOR A, Ashwell CM, Persia ME, Rothschild MF, et al
Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat.
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ZUO LH, Shang AQ, Zhang S, Yu XY, et al
The first complete chloroplast genome sequences of Ulmus species by de novo sequencing: Genome comparative and taxonomic position analysis.
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LEE MY, Park C, Ha SE, Park PJ, et al
Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels.
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MARTINS CO, Demarchi L, Ferreira FM, Pomerantzeff PM, et al
Rheumatic Heart Disease and Myxomatous Degeneration: Differences and Similarities of Valve Damage Resulting from Autoimmune Reactions and Matrix Disorganization.
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VILA M, Hermida M, Fernandez C, Perea S, et al
Phylogeography and Conservation Genetics of the Ibero-Balearic Three-Spined Stickleback (Gasterosteus aculeatus).
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EBERHARDT C, Thillai M, Parker R, Siddiqui N, et al
Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis.
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WANG H, Zhao S, Gao Y, Yang J, et al
Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa).
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FRAIJA-FERNANDEZ N, Fernandez M, Lehnert K, Raga JA, et al
Long-Distance Travellers: Phylogeography of a Generalist Parasite, Pholeter gastrophilus, from Cetaceans.
PLoS One. 2017;12:e0170184.
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WOO HJ, Yu C, Reifman J
Collective Genetic Interaction Effects and the Role of Antigen-Presenting Cells in Autoimmune Diseases.
PLoS One. 2017;12:e0169918.
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GRANT LR, O'Brien KL, Weatherholtz RC, Reid R, et al
Norovirus and Sapovirus Epidemiology and Strain Characteristics among Navajo and Apache Infants.
PLoS One. 2017;12:e0169491.
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XI Y, Jiao W, Cao J, Jiang W, et al
Effects of chlorogenic acid on capacity of free radicals scavenging and proteomic changes in postharvest fruit of nectarine.
PLoS One. 2017;12:e0182494.
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KUMAR S, Subbarao BL, Kumari R, Hallan V, et al
Molecular characterization of a novel cryptic virus infecting pigeonpea plants.
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ANEL-LOPEZ L, Ortega-Ferrusola C, Martinez-Rodriguez C, Alvarez M, et al
Analysis of seminal plasma from brown bear (Ursus arctos) during the breeding season: Its relationship with testosterone levels.
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DHARMAYANTHI AB, Terai Y, Sulandari S, Zein MS, et al
The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.
PLoS One. 2017;12:e0173147.
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LLUVERAS-TENORIO A, Vinciguerra R, Galano E, Blaensdorf C, et al
GC/MS and proteomics to unravel the painting history of the lost Giant Buddhas of Bamiyan (Afghanistan).
PLoS One. 2017;12:e0172990.
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RUTKOWSKI R, Zawadzka D, Suchecka E, Merta D, et al
Conservation genetics of the capercaillie in Poland - Delineation of conservation units.
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EDWARDS RD, Crisp MD, Cook DH, Cook LG, et al
Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics.
PLoS One. 2017;12:e0174812.
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SUN Y, Guo W, Wang F, Zhan C, et al
Transcriptome analysis of Corynebacterium glutamicum in the process of recombinant protein expression in bioreactors.
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GUINOISEAU T, Moreau A, Hohnadel G, Ngo-Giang-Huong N, et al
Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.
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PELLON A, Ramirez-Garcia A, Buldain I, Antoran A, et al
Molecular and cellular responses of the pathogenic fungus Lomentospora prolificans to the antifungal drug voriconazole.
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LI Y, Urban A, Midura D, Simon HG, et al
Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-kappaB in epicardial EMT.
PLoS One. 2017;12:e0174563.
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LI Y, Morrow J, Raby B, Tantisira K, et al
Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data.
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DECAP D, Reumers J, Herzeel C, Costanza P, et al
Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.
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MEINERT C, Brandt U, Heine V, Beyert J, et al
Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.
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ARNAU G, Bhattacharjee R, Mn S, Chair H, et al
Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.
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WARD LJ, Ljunggren SA, Karlsson H, Li W, et al
Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages.
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ZOU B, Li J, Zhou Q, Quan ZX, et al
MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
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MARROTTE RR, Bowman J
The relationship between least-cost and resistance distance.
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BYRUM SD, Burdine MS, Orr L, Mackintosh SG, et al
Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection.
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WOOD LE, De Grave S, Daniels SR
Phylogeographic patterning among two codistributed shrimp species (Crustacea: Decapoda: Palaemonidae) reveals high levels of connectivity across biogeographic regions along the South African coast.
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PAGES-MONTEIRO L, Marti R, Commun C, Alliot N, et al
Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa.
PLoS One. 2017;12:e0173022.
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REZNICK DN, Furness AI, Meredith RW, Springer MS, et al
The origin and biogeographic diversification of fishes in the family Poeciliidae.
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WANG Z, Fan G, Dong Y, Zhai X, et al
Implications of polyploidy events on the phenotype, microstructure, and proteome of Paulownia australis.
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CHENG J, Romantsov T, Engel K, Doxey AC, et al
Functional metagenomics reveals novel beta-galactosidases not predictable from gene sequences.
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PERUMAL N, Manicam C, Steinicke M, Funke S, et al
Characterization of the human aqueous humour proteome: A comparison of the genders.
PLoS One. 2017;12:e0172481.
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HTUN NM, Magliano DJ, Zhang ZY, Lyons J, et al
Prediction of acute coronary syndromes by urinary proteome analysis.
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GEBHARDT MJ, Jacobson RK, Shuman HA
Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria.
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NAKAOKA T, Iga M, Yamada T, Koujima I, et al
Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.
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BATISTA ME, Silva DD, Sales MA, Sa AA, et al
New data on the stem and leaf anatomy of two conifers from the Lower Cretaceous of the Araripe Basin, northeastern Brazil, and their taxonomic and paleoecological implications.
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BRYANT AE, Aldape MJ, Bayer CR, Katahira EJ, et al
Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.
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BENEVENUTO RF, Agapito-Tenfen SZ, Vilperte V, Wikmark OG, et al
Molecular responses of genetically modified maize to abiotic stresses as determined through proteomic and metabolomic analyses.
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PRICE A, Garhyan J, Gibas C
The impact of RNA secondary structure on read start locations on the Illumina sequencing platform.
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FOSCHI C, Laghi L, Parolin C, Giordani B, et al
Novel approaches for the taxonomic and metabolic characterization of lactobacilli: Integration of 16S rRNA gene sequencing with MALDI-TOF MS and 1H-NMR.
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VARGAS-CARO C, Bustamante C, Bennett MB, Ovenden JR, et al
Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean.
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SERGEANT K, Printz B, Gutsch A, Behr M, et al
Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases.
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WANG R, Cui Y, Xu Y, Irudayaraj J, et al
Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-beta-carboline (TaClo) in vitro.
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KAMFWA K, Zhao D, Kelly JD, Cichy KA, et al
Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation.
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PARK YJ, Koh J, Kwon JT, Park YS, et al
Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes.
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SAKAKI M, Ebihara Y, Okamura K, Nakabayashi K, et al
Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses.
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LI YH, Wang HP, Yao H, O'Bryant P, et al
De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens.
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HAMILTON SL, Logan CA, Fennie HW, Sogard SM, et al
Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics.
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ZACHER B, Michel M, Schwalb B, Cramer P, et al
Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
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BEISSER D, Kaschani F, Graupner N, Grossmann L, et al
Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
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NANDAKUMAR P, Tin A, Grove ML, Ma J, et al
MicroRNAs in the miR-17 and miR-15 families are downregulated in chronic kidney disease with hypertension.
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CLARKE B, Mahapatra M, Friedgut O, Bumbarov V, et al
Persistence of Lineage IV Peste-des-petits ruminants virus within Israel since 1993: An evolutionary perspective.
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SONG J, Hu Y, Li J, Zheng H, et al
Different microRNA profiles reveal the diverse outcomes induced by EV71 and CA16 infection in human umbilical vein endothelial cells using high-throughput sequencing.
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MORALES-CORREA E CASTRO AC, Barbosa NCCP
Recent evolutionary history of Chrysoperla externa (Hagen 1861) (Neuroptera: Chrysopidae) in Brazil.
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CARRERAS-PLANELLA L, Soler-Majoral J, Rubio-Esteve C, Lozano-Ramos SI, et al
Characterization and proteomic profile of extracellular vesicles from peritoneal dialysis efflux.
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KARAH N, Jolley KA, Hall RM, Uhlin BE, et al
Database for the ampC alleles in Acinetobacter baumannii.
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ZHU Y, Zhou G, Yu X, Xu Q, et al
LC-MS-MS quantitative analysis reveals the association between FTO and DNA methylation.
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RODRIGUES J, Viegas W, Silva M
45S rDNA external transcribed spacer organization reveals new phylogenetic relationships in Avena genus.
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WANG J, Pei L, Jin Z, Zhang K, et al
Overexpression of the protein phosphatase 2A regulatory subunit a gene ZmPP2AA1 improves low phosphate tolerance by remodeling the root system architecture of maize.
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YARYGIN K, Tyakht A, Larin A, Kostryukova E, et al
Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses.
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RAYMOND CK, Hernandez J, Karr R, Hill K, et al
Collection of cell-free DNA for genomic analysis of solid tumors in a clinical laboratory setting.
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RUEDA-ZARATE HA, Imaz-Rosshandler I, Cardenas-Ovando RA, Castillo-Fernandez JE, et al
A computational toxicogenomics approach identifies a list of highly hepatotoxic compounds from a large microarray database.
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NAOUR S, Espinoza BM, Aedo JE, Zuloaga R, et al
Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis.
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BARUAH IK, Panda D, M V J, Das DJ, et al
Bruchid egg induced transcript dynamics in developing seeds of black gram (Vigna mungo).
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ROOMP K, Kristinsson H, Schvartz D, Ubhayasekera K, et al
Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism.
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FUKUDA T, Nomura M, Kato Y, Tojo H, et al
A selected reaction monitoring mass spectrometric assessment of biomarker candidates diagnosing large-cell neuroendocrine lung carcinoma by the scaling method using endogenous references.
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NORONHA FERNANDES-BRUM C, Marinho Rezende P, Cherubino Ribeiro TH, Ricon de Oliveira R, et al
A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms.
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JEONG C, Peter BM, Basnyat B, Neupane M, et al
A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau.
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VIANA MVC, Figueiredo H, Ramos R, Guimaraes LC, et al
Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.
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ONUKI R, Yamaguchi R, Shibuya T, Kanehisa M, et al
Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks.
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WELINDER C, Pawlowski K, Szasz AM, Yakovleva M, et al
Correlation of histopathologic characteristics to protein expression and function in malignant melanoma.
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SINGH SK, Aspi J, Kvist L, Sharma R, et al
Fine-scale population genetic structure of the Bengal tiger (Panthera tigris tigris) in a human-dominated western Terai Arc Landscape, India.
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SALEHE BR, Jones CI, Di Fatta G, McGuffin LJ, et al
RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses.
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NAVARRO G, Martinez-Pinilla E, Sanchez-Melgar A, Ortiz R, et al
A genomics approach identifies selective effects of trans-resveratrol in cerebral cortex neuron and glia gene expression.
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OH J, Lee S, Lee H, Cho JY, et al
The novel carboxylesterase 1 variant c.662A>G may decrease the bioactivation of oseltamivir in humans.
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FRANCOIS L, Wijnrocx K, Colinet FG, Gengler N, et al
Genomics of a revived breed: Case study of the Belgian campine cattle.
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LI YZ, Fan XW, Chen Q, Zhong H, et al
A photoperiod-responsive protein compendium and conceptual proteome roadmap outline in maize grown in growth chambers with controlled conditions.
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LV J, Zhang L, Liu P, Li J, et al
Transcriptomic variation of eyestalk reveals the genes and biological processes associated with molting in Portunus trituberculatus.
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MURPHY SN, Avillach P, Bellazzi R, Phillips L, et al
Combining clinical and genomics queries using i2b2 - Three methods.
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MARITZ JM, Sullivan SA, Prill RJ, Aksoy E, et al
Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.
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RIBEIRO MM, Piotti A, Ricardo A, Gaspar D, et al
Genetic diversity and divergence at the Arbutus unedo L. (Ericaceae) westernmost distribution limit.
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LUDINGTON WB, Seher TD, Applegate O, Li X, et al
Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater.
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WEI LH, Yan S, Teo YY, Huang YZ, et al
Phylogeography of Y-chromosome haplogroup O3a2b2-N6 reveals patrilineal traces of Austronesian populations on the eastern coastal regions of Asia.
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ZHANG LJ, Cai WZ, Luo JY, Zhang S, et al
Phylogeographic patterns of Lygus pratensis (Hemiptera: Miridae): Evidence for weak genetic structure and recent expansion in northwest China.
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NICHOLAS A, Kim YK, Lee WK, Selasi GN, et al
Molecular epidemiology and antimicrobial susceptibility of Clostridium difficile isolates from two Korean hospitals.
PLoS One. 2017;12:e0174716.
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WAN X, Zhao X, Yau SS
An information-based network approach for protein classification.
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SONG YN, Dong S, Wei B, Liu P, et al
Metabolomic mechanisms of gypenoside against liver fibrosis in rats: An integrative analysis of proteomics and metabolomics data.
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FUKAGAWA T, Takafuji K, Tachibanaki S, Kawamura S, et al
Purification of cone outer segment for proteomic analysis on its membrane proteins in carp retina.
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CELIS JS, Edgell DR, Stelbrink B, Wibberg D, et al
Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
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LIU T, Luo C, Wang J, Ma J, et al
Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens.
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GUERRERO-JIMENEZ CJ, Pena F, Morales P, Mendez M, et al
Pattern of genetic differentiation of an incipient speciation process: The case of the high Andean killifish Orestias.
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CHRISTENSEN KA, Davidson WS
Autopolyploidy genome duplication preserves other ancient genome duplications in Atlantic salmon (Salmo salar).
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MATSUDA F, Kinoshita S, Nishino S, Tomita A, et al
Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism.
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LI J, Yang B, Shi M, Yuan K, et al
Effects upon metabolic pathways and energy production by Sb(III) and As(III)/Sb(III)-oxidase gene aioA in Agrobacterium tumefaciens GW4.
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HAFT DR, Haft DH
A comprehensive software suite for protein family construction and functional site prediction.
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MICALLEF G, Cash P, Fernandes JM, Rajan B, et al
Dietary Yeast Cell Wall Extract Alters the Proteome of the Skin Mucous Barrier in Atlantic Salmon (Salmo salar): Increased Abundance and Expression of a Calreticulin-Like Protein.
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ELMI AA, Bansal D, Acharya A, Skariah S, et al
Human Papillomavirus (HPV) Infection: Molecular Epidemiology, Genotyping, Seroprevalence and Associated Risk Factors among Arab Women in Qatar.
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JAMANN TM, Sood S, Wisser RJ, Holland JB, et al
High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time.
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BOUCHEHAM A, Sommard V, Zehraoui F, Boualem A, et al
IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data.
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PINSONNEAULT JK, Frater JT, Kompa B, Mascarenhas R, et al
Intronic SNP in ESR1 encoding human estrogen receptor alpha is associated with brain ESR1 mRNA isoform expression and behavioral traits.
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MOHR T, Haudek-Prinz V, Slany A, Grillari J, et al
Proteome profiling in IL-1beta and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis.
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PARK KH, Greenwood-Quaintance KE, Uhl JR, Cunningham SA, et al
Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.
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SINGH V, Singh B, Joshi R, Jaju P, et al
Changes in the leaf proteome profile of Withania somnifera (L.) Dunal in response to Alternaria alternata infection.
PLoS One. 2017;12:e0178924.
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ZHOU DX, Zhao Y, Baker JA, Gu Q, et al
The effect of alcohol on the differential expression of cluster of differentiation 14 gene, associated pathways, and genetic network.
PLoS One. 2017;12:e0178689.
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CSOSZ E, Labiscsak P, Kallo G, Markus B, et al
Proteomics investigation of OSCC-specific salivary biomarkers in a Hungarian population highlights the importance of identification of population-tailored biomarkers.
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UGARTE TORRES A, Chu A, Read R, MacDonald J, et al
The epidemiology of Staphylococcus aureus carriage in patients attending inner city sexually transmitted infections and community clinics in Calgary, Canada.
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GUPTA S, Bhar A, Chatterjee M, Ghosh A, et al
Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack.
PLoS One. 2017;12:e0178164.
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TEIXEIRA ADD, Games PD, Katz BB, Tomich JM, et al
Proteomic analysis in the Dufour's gland of Africanized Apis mellifera workers (Hymenoptera: Apidae).
PLoS One. 2017;12:e0177415.
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CAMERON SJS, Lewis KE, Huws SA, Hegarty MJ, et al
A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.
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WANG X, Shojaie A, Zhang Y, Shelley D, et al
Exploratory plasma proteomic analysis in a randomized crossover trial of aspirin among healthy men and women.
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YAMAZAKI T, Hatano Y, Handa T, Kato S, et al
Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.
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EVERS C, Fischer C, Dikow N, Schott S, et al
Familial breast cancer: Genetic counseling over time, including patients expectations and initiators considering the Angelina Jolie effect.
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XIAO W, Chen P, Xiao J, Wang, et al
Comparative transcriptome profiling of a thermal resistant vs. sensitive silkworm strain in response to high temperature under stressful humidity condition.
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HAKIMI O, Ternette N, Murphy R, Kessler BM, et al
A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue.
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WILLEMS H, Jacobs A, Hadiwikarta WW, Venken T, et al
Thermodynamic framework to assess low abundance DNA mutation detection by hybridization.
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BOHME M, Spassov N, Ebner M, Geraads D, et al
Messinian age and savannah environment of the possible hominin Graecopithecus from Europe.
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CHEN YC, Chen KD, Su MC, Chin CH, et al
Genome-wide gene expression array identifies novel genes related to disease severity and excessive daytime sleepiness in patients with obstructive sleep apnea.
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PAVA Z, Noviyanti R, Handayuni I, Trimarsanto H, et al
Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections.
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RAVIV B, Granot G, Chalifa-Caspi V, Grafi G, et al
The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.
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ZHENG Y, Xu S, Liu J, Zhao Y, et al
Genetic diversity and population structure of Chinese natural bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers.
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DIEZ BENAVENTE E, Ward Z, Chan W, Mohareb FR, et al
Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure.
PLoS One. 2017;12:e0177134.
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KHOMTCHOUK BB, Hennessy JR, Wahlestedt C
shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.
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PASCUAL M, Rives B, Schunter C, Macpherson E, et al
Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea.
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MONTANA L, Caniglia R, Galaverni M, Fabbri E, et al
Combining phylogenetic and demographic inferences to assess the origin of the genetic diversity in an isolated wolf population.
PLoS One. 2017;12:e0176560.
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YU H, Zhang Y, Wang Z, Liu L, et al
Diverse range dynamics and dispersal routes of plants on the Tibetan Plateau during the late Quaternary.
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ZHOU Y, Wang S, Zhu H, Li P, et al
Phylogeny and biogeography of South Chinese brown frogs (Ranidae, Anura).
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IBANEZ MI, Cabello P, Luque-Almagro VM, Saez LP, et al
Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).
PLoS One. 2017;12:e0172908.
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TRIVEDI MS, Holger D, Bui AT, Craddock TJA, et al
Short-term sleep deprivation leads to decreased systemic redox metabolites and altered epigenetic status.
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MURPHY SM, Augustine BC, Ulrey WA, Guthrie JM, et al
Consequences of severe habitat fragmentation on density, genetics, and spatial capture-recapture analysis of a small bear population.
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TSAI FJ, Chen SY, Liu YC, Liao HY, et al
The comparison of CHCA solvent compositions for improving LC-MALDI performance and its application to study the impact of aflatoxin B1 on the liver proteome of diabetes mellitus type 1 mice.
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EREZ O, Romero R, Maymon E, Chaemsaithong P, et al
The prediction of late-onset preeclampsia: Results from a longitudinal proteomics study.
PLoS One. 2017;12:e0181468.
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VOLDOIRE E, Brunet F, Naville M, Volff JN, et al
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish.
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OLIVEIRA LR, Gehara MCM, Fraga LD, Lopes F, et al
Ancient female philopatry, asymmetric male gene flow, and synchronous population expansion support the influence of climatic oscillations on the evolution of South American sea lion (Otaria flavescens).
PLoS One. 2017;12:e0179442.
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SINGH A, Sharma AK, Singh NK, Sharma TR, et al
PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.
PLoS One. 2017;12:e0179736.
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HAN Z, Huang H, Gao Y, Huang Q, et al
Functional annotation of Alzheimer's disease associated loci revealed by GWASs.
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DUNCAN C, Jamieson FB, Troudt J, Izzo L, et al
Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion.
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XU K, Niu Q, Zhao H, Du Y, et al
Transcriptomic analysis to uncover genes affecting cold resistance in the Chinese honey bee (Apis cerana cerana).
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MACKIEWICZ P, Moska M, Wierzbicki H, Gagat P, et al
Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group.
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WU YH, Cheng H, Xu L, Jin XB, et al
Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater.
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SUSEK K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, et al
Epigenomic diversification within the genus Lupinus.
PLoS One. 2017;12:e0179821.
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LISTL D, Poschlod P, Reisch C
Phylogeography of a tough rock survivor in European dry grasslands.
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RIZAL G, Karki S, Thakur V, Wanchana S, et al
A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio.
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BWOGI J, Jere KC, Karamagi C, Byarugaba DK, et al
Whole genome analysis of selected human and animal rotaviruses identified in Uganda from 2012 to 2014 reveals complex genome reassortment events between human, bovine, caprine and porcine strains.
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KRUSE A, Fattah-Hosseini S, Saha S, Johnson R, et al
Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.
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RIVERA M, Ramos Y, Rodriguez-Valentin M, Lopez-Acevedo S, et al
Targeting multiple pro-apoptotic signaling pathways with curcumin in prostate cancer cells.
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ADACHI S
Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data.
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PEARSON LJ, Klaharn IY, Thongsawang B, Manuprasert W, et al
Multiple extracellular vesicle types in peritoneal dialysis effluent are prominent and contain known biomarkers.
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LUO S, Cao N, Tang Y, Gu W, et al
Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis.
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GAMEZ-POZO A, Trilla-Fuertes L, Prado-Vazquez G, Chiva C, et al
Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics.
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PANNACCIULLI FG, Maltagliati F, de Guttry C, Achituv Y, et al
Phylogeography on the rocks: The contribution of current and historical factors in shaping the genetic structure of Chthamalus montagui (Crustacea, Cirripedia).
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SAHLBERG BANG C, Demirel I, Kruse R, Persson K, et al
Global gene expression profiling and antibiotic susceptibility after repeated exposure to the carbon monoxide-releasing molecule-2 (CORM-2) in multidrug-resistant ESBL-producing uropathogenic Escherichia coli.
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NYINE M, Uwimana B, Swennen R, Batte M, et al
Trait variation and genetic diversity in a banana genomic selection training population.
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WANG Y, Liu A, Li W, Jiang Y, et al
Comparative proteomic analysis of eggplant (Solanum melongena L.) heterostylous pistil development.
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BARANZELLI MC, Cosacov A, Ferreiro G, Johnson LA, et al
Travelling to the south: Phylogeographic spatial diffusion model in Monttea aphylla (Plantaginaceae), an endemic plant of the Monte Desert.
PLoS One. 2017;12:e0178827.
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Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus.
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KIM JK, Bae SE, Lee SJ, Yoon MG, et al
New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae).
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BECKER MG, Walker PL, Pulgar-Vidal NC, Belmonte MF, et al
SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets.
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BELL KL, Hamm CA, Shapiro AM, Nice CC, et al
Sympatric, temporally isolated populations of the pine white butterfly Neophasia menapia, are morphologically and genetically differentiated.
PLoS One. 2017;12:e0176989.
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KEPPLINGER D, Takhar M, Sasaki M, Hollander Z, et al
PGCA: An algorithm to link protein groups created from MS/MS data.
PLoS One. 2017;12:e0177569.
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MEI Y, Bi WL, Greenwald NF, Agar NY, et al
Genomic profile of human meningioma cell lines.
PLoS One. 2017;12:e0178322.
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KEARNEY P, Hunsucker SW, Li XJ, Porter A, et al
An integrated risk predictor for pulmonary nodules.
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ZAZA G, Dalla Gassa A, Felis G, Granata S, et al
Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen.
PLoS One. 2017;12:e0178228.
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PANTOJA Y, Pinheiro K, Veras A, Araujo F, et al
PanWeb: A web interface for pan-genomic analysis.
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LEWANDOWSKA DW, Schreiber PW, Schuurmans MM, Ruehe B, et al
Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection.
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NEUDITSCHKO M, Raadsma HW, Khatkar MS, Jonas E, et al
Identification of key contributors in complex population structures.
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HAJRAH NH, Obaid AY, Atef A, Ramadan AM, et al
Transcriptomic analysis of salt stress responsive genes in Rhazya stricta.
PLoS One. 2017;12:e0177589.
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MONDEJAR R, Perez C, Onaindia A, Martinez N, et al
Molecular basis of targeted therapy in T/NK-cell lymphoma/leukemia: A comprehensive genomic and immunohistochemical analysis of a panel of 33 cell lines.
PLoS One. 2017;12:e0177524.
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ZHANG W, Xu J, Li Y, Zou X, et al
A new two-stage method for revealing missing parts of edges in protein-protein interaction networks.
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VAHIA MN, Yadav N, Ladiwala U, Mathur D, et al
A diffusion based study of population dynamics: Prehistoric migrations into South Asia.
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CASTLEY A, Sawleshwarkar S, Varma R, Herring B, et al
A national study of the molecular epidemiology of HIV-1 in Australia 2005-2012.
PLoS One. 2017;12:e0170601.
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HAEUSERMANN T, Greshake B, Blasimme A, Irdam D, et al
Open sharing of genomic data: Who does it and why?
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TRIFILETTI DM, Sturz VN, Showalter TN, Lobo JM, et al
Towards decision-making using individualized risk estimates for personalized medicine: A systematic review of genomic classifiers of solid tumors.
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DANTAS RCC, Silva RTE, Ferreira ML, Goncalves IR, et al
Molecular epidemiological survey of bacteremia by multidrug resistant Pseudomonas aeruginosa: the relevance of intrinsic resistance mechanisms.
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PLAIRE D, Puaud S, Marsolier-Kergoat MC, Elalouf JM, et al
Comparative analysis of the sensitivity of metagenomic sequencing and PCR to detect a biowarfare simulant (Bacillus atrophaeus) in soil samples.
PLoS One. 2017;12:e0177112.
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KOC I, Caetano-Anolles G
The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.
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PETERSEN TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, et al
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
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ROZENBLUM E, Sotelo-Silveira JR, Kim GY, Zhu JY, et al
Novel near-diploid ovarian cancer cell line derived from a highly aneuploid metastatic ovarian tumor.
PLoS One. 2017;12:e0182610.
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TONG ML, Zhao Q, Liu LL, Zhu XZ, et al
Whole genome sequence of the Treponema pallidum subsp. pallidum strain Amoy: An Asian isolate highly similar to SS14.
PLoS One. 2017;12:e0182768.
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NG PK, Lin SM, Lim PE, Hurtado AQ, et al
Genetic and morphological analyses of Gracilaria firma and G. changii (Gracilariaceae, Rhodophyta), the commercially important agarophytes in western Pacific.
PLoS One. 2017;12:e0182176.
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TANI H, Takeshita JI, Aoki H, Nakamura K, et al
Identification of RNA biomarkers for chemical safety screening in mouse embryonic stem cells using RNA deep sequencing analysis.
PLoS One. 2017;12:e0182032.
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DENG M, Dong Y, Zhao Z, Li Y, et al
Dissecting the proteome dynamics of the salt stress induced changes in the leaf of diploid and autotetraploid Paulownia fortunei.
PLoS One. 2017;12:e0181937.
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BECK SV, Carvalho GR, Barlow A, Ruber L, et al
Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax.
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YAKOVLEVA A, Plieskatt JL, Jensen S, Humeida R, et al
Fit for genomic and proteomic purposes: Sampling the fitness of nucleic acid and protein derivatives from formalin fixed paraffin embedded tissue.
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SORIA-BOIX C, Donat-Torres MP, Urios V
Contacts in the last 90,000 years over the Strait of Gibraltar evidenced by genetic analysis of wild boar (Sus scrofa).
PLoS One. 2017;12:e0181929.
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CHO HR, Kim HS, Park JS, Park SC, et al
Construction and characterization of the Korean whole saliva proteome to determine ethnic differences in human saliva proteome.
PLoS One. 2017;12:e0181765.
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BRUNELLI A, Kampuansai J, Seielstad M, Lomthaisong K, et al
Y chromosomal evidence on the origin of northern Thai people.
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PERSYN E, Karakachoff M, Le Scouarnec S, Le Clezio C, et al
DoEstRare: A statistical test to identify local enrichments in rare genomic variants associated with disease.
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ZHANG H, Yin L, Wang H, Wang G, et al
Genome-wide identification of Hami melon miRNAs with putative roles during fruit development.
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PASCUAL T, Apellaniz-Ruiz M, Pernaut C, Cueto-Felgueroso C, et al
Polymorphisms associated with everolimus pharmacokinetics, toxicity and survival in metastatic breast cancer.
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ABERNATHY J, Brezas A, Snekvik KR, Hardy RW, et al
Integrative functional analyses using rainbow trout selected for tolerance to plant diets reveal nutrigenomic signatures for soy utilization without the concurrence of enteritis.
PLoS One. 2017;12:e0180972.
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GUO P, Zhu B, Xu L, Niu H, et al
Genomic prediction with parallel computing for slaughter traits in Chinese Simmental beef cattle using high-density genotypes.
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ALANAGREH L, Pegg C, Harikumar A, Buchheim M, et al
Assessing intragenomic variation of the internal transcribed spacer two: Adapting the Illumina metagenomics protocol.
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RYU YS, Chandran SP, Kim K, Lee SK, et al
Oligo- and dsDNA-mediated genome editing using a tetA dual selection system in Escherichia coli.
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ALLEVATO M, Bolotin E, Grossman M, Mane-Padros D, et al
Sequence-specific DNA binding by MYC/MAX to low-affinity non-E-box motifs.
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KLYCZEK KK, Bonilla JA, Jacobs-Sera D, Adair TL, et al
Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages.
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DOU L, Jia X, Wei H, Fan S, et al
Global analysis of DNA methylation in young (J1) and senescent (J2) Gossypium hirsutum L. cotyledons by MeDIP-Seq.
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PINNA C, Carta L, Deiana V, Camarda I, et al
Phyto-toponyms of Arbutus unedo L. and their distribution in Sardinia (Italy).
PLoS One. 2017;12:e0181174.
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JAISWAL RK, Kumar P, Sharma A, Mishra DK, et al
Proteomic identification of proteins differentially expressed following overexpression of hTERT (human telomerase reverse transcriptase) in cancer cells.
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WANG H, Ba H, Yang C, Zhang J, et al
Inner and inter population structure construction of Chinese Jiangsu Han population based on Y23 STR system.
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FAN W, Zhong Y, Qin M, Lin B, et al
Differentially expressed microRNAs in diapausing versus HCl-treated Bombyx embryos.
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XU EG, Mager EM, Grosell M, Stieglitz JD, et al
Developmental transcriptomic analyses for mechanistic insights into critical pathways involved in embryogenesis of pelagic mahi-mahi (Coryphaena hippurus).
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ZEREYESUS YA, Dalton TJ
Rates of return to sorghum and millet research investments: A meta-analysis.
PLoS One. 2017;12:e0180414.
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BAI Y, Li X
Late Miocene Pseudolarix amabilis bract-scale complex from Zhejiang, East China.
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WEN F, Wu X, Li T, Jia M, et al
Genome-wide survey of heat shock factors and heat shock protein 70s and their regulatory network under abiotic stresses in Brachypodium distachyon.
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HAN B, Zhang S, Zeng F, Mao J, et al
Nutritional and reproductive signaling revealed by comparative gene expression analysis in Chrysopa pallens (Rambur) at different nutritional statuses.
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EZURA K, Ji-Seong K, Mori K, Suzuki Y, et al
Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum).
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ZEHENDER G, Veo C, Ebranati E, Carta V, et al
Reconstructing the recent West Nile virus lineage 2 epidemic in Europe and Italy using discrete and continuous phylogeography.
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ZHOU X, Xing X, Hou J, Liu J, et al
Quantitative proteomics analysis of proteins involved in alkane uptake comparing the profiling of Pseudomonas aeruginosa SJTD-1 in response to n-octadecane and n-hexadecane.
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BOVO S, Mazzoni G, Ribani A, Utzeri VJ, et al
A viral metagenomic approach on a non-metagenomic experiment: Mining next generation sequencing datasets from pig DNA identified several porcine parvoviruses for a retrospective evaluation of viral infections.
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FENG B, Guo Q, Zheng K, Qin Y, et al
Antennal transcriptome analysis of the piercing moth Oraesia emarginata (Lepidoptera: Noctuidae).
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CUI H, Bansal V, Grunert M, Malecova B, et al
Muscle-relevant genes marked by stable H3K4me2/3 profiles and enriched MyoD binding during myogenic differentiation.
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D'IPPOLITO S, Di Simone N, Orteschi D, Pomponi MG, et al
The chromosome analysis of the miscarriage tissue. Miscarried embryo/fetal crown rump length (CRL) measurement: A practical use.
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CHEN X, Zhang M, Tan J, Huang S, et al
Comparative transcriptome analysis provides insights into molecular mechanisms for parthenocarpic fruit development in eggplant (Solanum melongena L.).
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GOMEZ-GARZON C, Hernandez-Santana A, Dussan J
A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials.
PLoS One. 2017;12:e0179666.
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HU J, Lei L, de Meaux J
Temporal fitness fluctuations in experimental Arabidopsis thaliana populations.
PLoS One. 2017;12:e0178990.
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NEY G, Schul J
Population structure within the one-dimensional range of a coastal plain katydid.
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DE AZEVEDO PEIXOTO L, Moellers TC, Zhang J, Lorenz AJ, et al
Leveraging genomic prediction to scan germplasm collection for crop improvement.
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AGUILAR D, Pinart M, Koppelman GH, Saeys Y, et al
Computational analysis of multimorbidity between asthma, eczema and rhinitis.
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SUN Y, Chen C, Gao J, Abbas MN, et al
Comparative mitochondrial genome analysis of Daphnis nerii and other lepidopteran insects reveals conserved mitochondrial genome organization and phylogenetic relationships.
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TOMAR S, Sethi R, Sundar G, Quah TC, et al
Mutation spectrum of RB1 mutations in retinoblastoma cases from Singapore with implications for genetic management and counselling.
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MORENO PS, Wagner J, Mansfield CS, Stevens M, et al
Characterisation of the canine faecal virome in healthy dogs and dogs with acute diarrhoea using shotgun metagenomics.
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PLANCHON M, Leger T, Spalla O, Huber G, et al
Metabolomic and proteomic investigations of impacts of titanium dioxide nanoparticles on Escherichia coli.
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LIANG D, Leung RKK, Lee SS, Kam KM, et al
Insights into intercontinental spread of Zika virus.
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KIM JH, Kang JH, Jang JE, Choi SK, et al
Population genetic structure of eelgrass (Zostera marina) on the Korean coast: Current status and conservation implications for future management.
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NYALWIDHE JO, Grzesik WJ, Burch TC, Semeraro ML, et al
Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes.
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LIN Y, Zhu J, Wang Y, Li Q, et al
Identification of differentially expressed genes through RNA sequencing in goats (Capra hircus) at different postnatal stages.
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GUSSOW AB, Copeland BR, Dhindsa RS, Wang Q, et al
Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics.
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CONVERSE PE, Kuchta SR, Hauswaldt JS, Roosenburg WM, et al
Turtle soup, Prohibition, and the population genetic structure of Diamondback Terrapins (Malaclemys terrapin).
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JI ZH, Chen J, Gao W, Zhang JY, et al
Cutaneous transcriptome analysis in NIH hairless mice.
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YAN J, Zhang P, Jiao F, Wang Q, et al
Quantitative proteomics in A30P*A53T alpha-synuclein transgenic mice reveals upregulation of Sel1l.
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DREWRY DH, Wells CI, Andrews DM, Angell R, et al
Progress towards a public chemogenomic set for protein kinases and a call for contributions.
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ALVAREZ-SILVA MC, Alvarez-Yela AC, Gomez-Cano F, Zambrano MM, et al
Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.
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COSTEA PI, Munch R, Coelho LP, Paoli L, et al
metaSNV: A tool for metagenomic strain level analysis.
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LAVOUE S, Bertrand JAM, Wang HY, Chen WJ, et al
Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific.
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FELTEN A, Guillier L, Radomski N, Mistou MY, et al
Genome Target Evaluator (GTEvaluator): A workflow exploiting genome dataset to measure the sensitivity and specificity of genetic markers.
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PU C, Li H, Zhu A, Chen Y, et al
Phylogeography in Nassarius mud snails: Complex patterns in congeneric species.
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IANGRAI B, Pattanayak A, Khongwir DEA, Pale G, et al
Development and characterization of a new set of genomic microsatellite markers in rice bean (Vigna umbellata (Thunb.) Ohwi and Ohashi) and their utilization in genetic diversity analysis of collections from North East India.
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CALAZANS C SH, Walters LJ, Fernandes FC, Ferreira CEL, et al
Genetic structure provides insights into the geographic origins and temporal change in the invasive charru mussel (Sururu) in the southeastern United States.
PLoS One. 2017;12:e0180619.
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WILLIAMS KE, Huyvaert KP, Piaggio AJ
Clearing muddied waters: Capture of environmental DNA from turbid waters.
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WEI WQ, Bastarache LA, Carroll RJ, Marlo JE, et al
Evaluating phecodes, clinical classification software, and ICD-9-CM codes for phenome-wide association studies in the electronic health record.
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BALAZIK MT, Farrae DJ, Darden TL, Garman GC, et al
Genetic differentiation of spring-spawning and fall-spawning male Atlantic sturgeon in the James River, Virginia.
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CROUZET M, Claverol S, Lomenech AM, Le Senechal C, et al
Pseudomonas aeruginosa cells attached to a surface display a typical proteome early as 20 minutes of incubation.
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REISBERG S, Iljasenko T, Lall K, Fischer K, et al
Comparing distributions of polygenic risk scores of type 2 diabetes and coronary heart disease within different populations.
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BOGACKA I, Paukszto L, Jastrzebski JP, Czerwinska J, et al
Seasonal differences in the testicular transcriptome profile of free-living European beavers (Castor fiber L.) determined by the RNA-Seq method.
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PALMA RE, Gutierrez-Tapia P, Gonzalez JF, Boric-Bargetto D, et al
Mountaintops phylogeography: A case study using small mammals from the Andes and the coast of central Chile.
PLoS One. 2017;12:e0180231.
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OSEI SEKYERE J, Amoako DG
Genomic and phenotypic characterisation of fluoroquinolone resistance mechanisms in Enterobacteriaceae in Durban, South Africa.
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MCMAHAN CD, Ginger L, Cage M, David KT, et al
Pleistocene to holocene expansion of the black-belt cichlid in Central America, Vieja maculicauda (Teleostei: Cichlidae).
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PENG T, Ma L, Feng X, Tao J, et al
Genomic and transcriptomic analyses reveal adaptation mechanisms of an Acidithiobacillus ferrivorans strain YL15 to alpine acid mine drainage.
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LIN Q, Liang JR, Huang QQ, Luo CS, et al
Differential cellular responses associated with oxidative stress and cell fate decision under nitrate and phosphate limitations in Thalassiosira pseudonana: Comparative proteomics.
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PAN L, Yang Z, Wang J, Wang P, et al
Comparative proteomic analyses reveal the proteome response to short-term drought in Italian ryegrass (Lolium multiflorum).
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ROY J, Wycislo KL, Pondenis H, Fan TM, et al
Comparative proteomic investigation of metastatic and non-metastatic osteosarcoma cells of human and canine origin.
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MARTINA F, Beccuti M, Balbo G, Cordero F, et al
Peculiar Genes Selection: A new features selection method to improve classification performances in imbalanced data sets.
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ASAF S, Khan AL, Aaqil Khan M, Muhammad Imran Q, et al
Comparative analysis of complete plastid genomes from wild soybean (Glycine soja) and nine other Glycine species.
PLoS One. 2017;12:e0182281.
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ALEXANDER KL, Katz J, Elson CO
CBirTox is a selective antigen-specific agonist of the Treg-IgA-microbiota homeostatic pathway.
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POTRIQUET J, Laohaviroj M, Bethony JM, Mulvenna J, et al
A modified FASP protocol for high-throughput preparation of protein samples for mass spectrometry.
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LONG Z, Duan G, Li H, Yi T, et al
Ubiquinol-cytochrome c reductase core protein 1 may be involved in delayed cardioprotection from preconditioning induced by diazoxide.
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MAKONDI PT, Chu CM, Wei PL, Chang YJ, et al
Prediction of novel target genes and pathways involved in irinotecan-resistant colorectal cancer.
PLoS One. 2017;12:e0180616.
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MUNUNG NS, Mayosi BM, de Vries J
Equity in international health research collaborations in Africa: Perceptions and expectations of African researchers.
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MENA M, Lloveras B, Tous S, Bogers J, et al
Development and validation of a protocol for optimizing the use of paraffin blocks in molecular epidemiological studies: The example from the HPV-AHEAD study.
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YANG EH, Rode J, Howlader MA, Eckermann M, et al
Galectin-3 alters the lateral mobility and clustering of beta1-integrin receptors.
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MARQUEZ-RODAS I, Pollan M, Escudero MJ, Ruiz A, et al
Frequency of breast cancer with hereditary risk features in Spain: Analysis from GEICAM "El Alamo III" retrospective study.
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RUDEBUSCH J, Benkner A, Poesch A, Dorr M, et al
Dynamic adaptation of myocardial proteome during heart failure development.
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PILLING LC, Atkins JL, Duff MO, Beaumont RN, et al
Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.
PLoS One. 2017;12:e0185083.
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MORAN EV, Reid A, Levine JM
Population genetics and adaptation to climate along elevation gradients in invasive Solidago canadensis.
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TONUSSI RL, Silva RMO, Magalhaes AFB, Espigolan R, et al
Application of single step genomic BLUP under different uncertain paternity scenarios using simulated data.
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TRAPANESE M, Buglione M, Maselli V, Petrelli S, et al
The first transcriptome of Italian wall lizard, a new tool to infer about the Island Syndrome.
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WELSH EA, Stewart PA, Kuenzi BM, Eschrich JA, et al
Escape Excel: A tool for preventing gene symbol and accession conversion errors.
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LOPES CARDOSO D, Sharpe C
Relating protein functional diversity to cell type number identifies genes that determine dynamic aspects of chromatin organisation as potential contributors to organismal complexity.
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LABIRAN C, Rowen D, Clarke IN, Marsh P, et al
Detailed molecular epidemiology of Chlamydia trachomatis in the population of Southampton attending the genitourinary medicine clinic in 2012-13 reveals the presence of long established genotypes and transitory sexual networks.
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JOHNSTON CD, Skeete CA, Fomenkov A, Roberts RJ, et al
Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia.
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SAGHAPOUR E, Kermani S, Sehhati M
A novel feature ranking method for prediction of cancer stages using proteomics data.
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WILKE ABB, Wilk-da-Silva R, Marrelli MT
Microgeographic population structuring of Aedes aegypti (Diptera: Culicidae).
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UNGARO A, Pech N, Martin JF, McCairns RJS, et al
Challenges and advances for transcriptome assembly in non-model species.
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YI L, Hu N, Yin J, Sun J, et al
Up-regulation of calreticulin in mouse liver tissues after long-term irradiation with low-dose-rate gamma rays.
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TIBUAKUU M, Kamimura D, Kianoush S, DeFilippis AP, et al
The association between cigarette smoking and inflammation: The Genetic Epidemiology Network of Arteriopathy (GENOA) study.
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YANG Z, Zhang Y, Jiang Y, Zhu F, et al
Transcriptional responses in the hepatopancreas of Eriocheir sinensis exposed to deltamethrin.
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HRANILOVIC A, Bely M, Masneuf-Pomarede I, Jiranek V, et al
The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems.
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ELDERMAN M, Sovran B, Hugenholtz F, Graversen K, et al
The effect of age on the intestinal mucus thickness, microbiota composition and immunity in relation to sex in mice.
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BELAIR DG, Wolf CJ, Wood C, Ren H, et al
Engineering human cell spheroids to model embryonic tissue fusion in vitro.
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AJORLOO F, Vaezi M, Saadat A, Safaee SR, et al
A systems medicine approach for finding target proteins affecting treatment outcomes in patients with non-Hodgkin lymphoma.
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MEZZASALMA V, Sandionigi A, Bruni I, Bruno A, et al
Grape microbiome as a reliable and persistent signature of field origin and environmental conditions in Cannonau wine production.
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BLAGODATSKIKH KA, Kramarov VM, Barsova EV, Garkovenko AV, et al
Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA.
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JENKINS TP, Rathnayaka Y, Perera PK, Peachey LE, et al
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition.
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CIESLAK M, Wahli T, Diserens N, Haenen OLM, et al
Phylogeny of the infectious hematopoietic necrosis virus in European aquaculture.
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POKORN T, Radisek S, Javornik B, Stajner N, et al
Development of hop transcriptome to support research into host-viroid interactions.
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FESTA S, Coppotelli BM, Madueno L, Loviso CL, et al
Assigning ecological roles to the populations belonging to a phenanthrene-degrading bacterial consortium using omic approaches.
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ZHU Q, Liao BY, Li P, Li JC, et al
Phylogeographic pattern suggests a general northeastward dispersal in the distribution of Machilus pauhoi in South China.
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GENG P, Tian S, Yuan Z, Hu X, et al
Identification and genomic comparison of temperate bacteriophages derived from emetic Bacillus cereus.
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ROODT D, Lohaus R, Sterck L, Swanepoel RL, et al
Evidence for an ancient whole genome duplication in the cycad lineage.
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LORANT A, Pedersen S, Holst I, Hufford MB, et al
The potential role of genetic assimilation during maize domestication.
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FERNANDEZ-PEREZ J, Nanton A, Ruiz-Ruano FJ, Camacho JPM, et al
First complete female mitochondrial genome in four bivalve species genus Donax and their phylogenetic relationships within the Veneroida order.
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WANG X, Wen X, Zhou J, Qi Y, et al
MicroRNA-223 and microRNA-21 in peripheral blood B cells associated with progression of primary biliary cholangitis patients.
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JEONG S, Kim J, Park W, Jeon H, et al
SEXCMD: Development and validation of sex marker sequences for whole-exome/genome and RNA sequencing.
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HUANG QF, Trenson S, Zhang ZY, Yang WY, et al
Urinary Proteomics in Predicting Heart Transplantation Outcomes (uPROPHET)-Rationale and database description.
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BESTER-VAN DER MERWE AE, Bitalo D, Cuevas JM, Ovenden J, et al
Population genetics of Southern Hemisphere tope shark (Galeorhinus galeus): Intercontinental divergence and constrained gene flow at different geographical scales.
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SINGH RP, Runthala A, Khan S, Jha PN, et al
Quantitative proteomics analysis reveals the tolerance of wheat to salt stress in response to Enterobacter cloacae SBP-8.
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MUKHERJEE S, Barash D, Sengupta S
Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria.
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CHEN L, Zhang YH, Wang S, Zhang Y, et al
Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways.
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MULLER M, Seifert S, Lubbe T, Leuschner C, et al
De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech.
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PARK JS, Jung SW, Ki JS, Guo R, et al
Transfer of the small diatoms Thalassiosira proschkinae and T. spinulata to the genus Minidiscus and their taxonomic re-description.
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MUSACCHIA F, Vasilev F, Borra M, Biffali E, et al
De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus.
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WANG X, Li W, Zhang Y, Feng Y, et al
Chronic obstructive pulmonary disease candidate gene prioritization based on metabolic networks and functional information.
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ZHOU R, Lin X, Li DY, Wang XF, et al
Identification of novel genetic loci for osteoporosis and/or rheumatoid arthritis using cFDR approach.
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ROSA JD, Weber GG, Cardoso R, Gorski F, et al
Variability and population genetic structure in Achyrocline flaccida (Weinm.) DC., a species with high value in folk medicine in South America.
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GUO Y, Wang Z, Guan X, Hu Z, et al
Proteomic analysis of Potentilla fruticosa L. leaves by iTRAQ reveals responses to heat stress.
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TOURNEBIZE R, Manel S, Vigouroux Y, Munoz F, et al
Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda.
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JIA X, Xi BD, Li MX, Yang Y, et al
Metaproteomics analysis of the functional insights into microbial communities of combined hydrogen and methane production by anaerobic fermentation from reed straw.
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MURRAY-DICKSON G, Ghazali M, Ogden R, Brown R, et al
Phylogeography of the reticulated python (Malayopython reticulatus ssp.): Conservation implications for the worlds' most traded snake species.
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ABECIA L, Jimenez E, Martinez-Fernandez G, Martin-Garcia AI, et al
Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats.
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WANG X, Kong L, Chen J, Matsukuma A, et al
Phylogeography of bivalve Meretrix petechialis in the Northwestern Pacific indicated by mitochondrial and nuclear DNA data.
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JINGTING S, Qin X, Yanju S, Ming Z, et al
Oxidative and glycolytic skeletal muscles show marked differences in gene expression profile in Chinese Qingyuan partridge chickens.
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RUAN J, Cheng J, Zhang T, Jiang H, et al
Mitochondrial genome evolution in the Saccharomyces sensu stricto complex.
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HE T, Zhang H, Wang J, Wu S, et al
Proteomic comparison by iTRAQ combined with mass spectrometry of egg white proteins in laying hens (Gallus gallus) fed with soybean meal and cottonseed meal.
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LE TM, Le QVC, Truong DM, Lee HJ, et al
beta2-microglobulin gene duplication in cetartiodactyla remains intact only in pigs and possibly confers selective advantage to the species.
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CHEN H, Peng S, Dai L, Zou Q, et al
Oral microbial community assembly under the influence of periodontitis.
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MASUOKA H, Shimada K, Kiyosue-Yasuda T, Kiyosue M, et al
Transition of the intestinal microbiota of cats with age.
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SANTAMANS AC, Boluda R, Picazo A, Gil C, et al
Soil features in rookeries of Antarctic penguins reveal sea to land biotransport of chemical pollutants.
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MATSUYAMA T, Yasuike M, Fujiwara A, Nakamura Y, et al
A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis.
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LAKIOTAKI K, Kanterakis A, Kartsaki E, Katsila T, et al
Exploring public genomics data for population pharmacogenomics.
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HARRISON SE, Harvey MS, Cooper SJB, Austin AD, et al
Across the Indian Ocean: A remarkable example of trans-oceanic dispersal in an austral mygalomorph spider.
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SIMO-RIUDALBAS M, Metallinou M, de Pous P, Els J, et al
Cryptic diversity in Ptyodactylus (Reptilia: Gekkonidae) from the northern Hajar Mountains of Oman and the United Arab Emirates uncovered by an integrative taxonomic approach.
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HAMADA N
Ionizing radiation response of primary normal human lens epithelial cells.
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GIOUTLAKIS A, Klapa MI, Moschonas NK
PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology.
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ARADHYA M, Velasco D, Ibrahimov Z, Toktoraliev B, et al
Genetic and ecological insights into glacial refugia of walnut (Juglans regia L.).
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WANG D, Li L, Wu G, Vasseur L, et al
De novo transcriptome sequencing of Isaria cateniannulata and comparative analysis of gene expression in response to heat and cold stresses.
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AKPAKA PE, Kissoon S, Jayaratne P, Wilson C, et al
Genetic characteristics and molecular epidemiology of vancomycin-resistant Enterococci isolates from Caribbean countries.
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CARLINI DB, Fong DW
The transcriptomes of cave and surface populations of Gammarus minus (Crustacea: Amphipoda) provide evidence for positive selection on cave downregulated transcripts.
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REINHOLD D, Morrow JD, Jacobson S, Hu J, et al
Meta-analysis of peripheral blood gene expression modules for COPD phenotypes.
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AHMAD J, Bashir H, Bagheri R, Baig A, et al
Drought and salinity induced changes in ecophysiology and proteomic profile of Parthenium hysterophorus.
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BRISSE HJ, Blanc T, Schleiermacher G, Mosseri V, et al
Radiogenomics of neuroblastomas: Relationships between imaging phenotypes, tumor genomic profile and survival.
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LUAN X, Cao Z, Xing Z, Liu M, et al
Comparative proteomic analysis of pituitary glands from Huoyan geese between pre-laying and laying periods using an iTRAQ-based approach.
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GLUCK JM, Herren AW, Yechikov S, Kao HKJ, et al
Biochemical and biomechanical properties of the pacemaking sinoatrial node extracellular matrix are distinct from contractile left ventricular matrix.
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MOUSSA TAA, Al-Zahrani HS, Almaghrabi OA, Abdelmoneim TS, et al
Comparative metagenomics approaches to characterize the soil fungal communities of western coastal region, Saudi Arabia.
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BOUVIER M, Durrieu S, Gosselin F, Herpigny B, et al
Use of airborne lidar data to improve plant species richness and diversity monitoring in lowland and mountain forests.
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JOHANSSON F, Halvarsson P, Mikolajewski DJ, Hoglund J, et al
Phylogeography and larval spine length of the dragonfly Leucorhinia dubia in Europe.
PLoS One. 2017;12:e0184596.
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LI Y, Khalafalla AI, Paden CR, Yusof MF, et al
Identification of diverse viruses in upper respiratory samples in dromedary camels from United Arab Emirates.
PLoS One. 2017;12:e0184718.
PubMed Text format Abstract available

MEHANNA P, Gagne V, Lajoie M, Spinella JF, et al
Characterization of the microDNA through the response to chemotherapeutics in lymphoblastoid cell lines.
PLoS One. 2017;12:e0184365.
PubMed Text format Abstract available

MECH LD, Asa CS, Callahan M, Christensen BW, et al
Studies of wolf x coyote hybridization via artificial insemination.
PLoS One. 2017;12:e0184342.
PubMed Text format Abstract available

PARK I, Kim WJ, Yang S, Yeo SM, et al
The complete chloroplast genome sequence of Aconitum coreanum and Aconitum carmichaelii and comparative analysis with other Aconitum species.
PLoS One. 2017;12:e0184257.
PubMed Text format Abstract available

HARDY JJ, Mooney SR, Pearson AN, McGuire D, et al
Assessing the accuracy of blood RNA profiles to identify patients with post-concussion syndrome: A pilot study in a military patient population.
PLoS One. 2017;12:e0183113.
PubMed Text format Abstract available

HILMARSSON HS, Hytonen T, Isobe S, Goransson M, et al
Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers.
PLoS One. 2017;12:e0183384.
PubMed Text format Abstract available

MERKLEY ED, Sego LH, Lin A, Leiser OP, et al
Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.
PLoS One. 2017;12:e0183478.
PubMed Text format Abstract available

YWASAKI LIMA J, Machado FB, Farro APC, Barbosa LA, et al
Population genetic structure of Guiana dolphin (Sotalia guianensis) from the southwestern Atlantic coast of Brazil.
PLoS One. 2017;12:e0183645.
PubMed Text format Abstract available

MARKUS B, Szabo K, Pfliegler WP, Petrenyi K, et al
Proteomic analysis of protein phosphatase Z1 from Candida albicans.
PLoS One. 2017;12:e0183176.
PubMed Text format Abstract available

CANTRES-ROSARIO YM, Acevedo-Mariani FM, Perez-Laspiur J, Haskins WE, et al
Microwave & magnetic proteomics of macrophages from patients with HIV-associated cognitive impairment.
PLoS One. 2017;12:e0181779.
PubMed Text format Abstract available

BARBIERI R, Mekni R, Levasseur A, Chabriere E, et al
Paleoproteomics of the Dental Pulp: The plague paradigm.
PLoS One. 2017;12:e0180552.
PubMed Text format Abstract available

MANTOOTH K, Hadziabdic D, Boggess S, Windham M, et al
Confirmation of independent introductions of an exotic plant pathogen of Cornus species, Discula destructiva, on the east and west coasts of North America.
PLoS One. 2017;12:e0180345.
PubMed Text format Abstract available

CHEN Q, Pei D, Li J, Jing C, et al
The antenna transcriptome changes in mosquito Anopheles sinensis, pre- and post- blood meal.
PLoS One. 2017;12:e0181399.
PubMed Text format Abstract available

HIRAI J, Nagai S, Hidaka K
Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454.
PLoS One. 2017;12:e0181452.
PubMed Text format Abstract available

GAO L, He C, Bao X, Tian M, et al
Transcriptome analysis of the sea cucumber (Apostichopus japonicus) with variation in individual growth.
PLoS One. 2017;12:e0181471.
PubMed Text format Abstract available

CHATURVEDI S, Rao ALN
Riboproteomics: A versatile approach for the identification of host protein interaction network in plant pathogenic noncoding RNAs.
PLoS One. 2017;12:e0186703.
PubMed Text format Abstract available

THEOFANOPOULOU C, Gastaldon S, O'Rourke T, Samuels BD, et al
Self-domestication in Homo sapiens: Insights from comparative genomics.
PLoS One. 2017;12:e0185306.
PubMed Text format Abstract available

MAQUEDA M, Roca E, Brotons D, Soria JM, et al
Affected pathways and transcriptional regulators in gene expression response to an ultra-marathon trail: Global and independent activity approaches.
PLoS One. 2017;12:e0180322.
PubMed Text format Abstract available

PEREZ-ZAMORANO B, Rosas-Madrigal S, Lozano OAM, Castillo Mendez M, et al
Identification of cis-regulatory sequences reveals potential participation of lola and Deaf1 transcription factors in Anopheles gambiae innate immune response.
PLoS One. 2017;12:e0186435.
PubMed Text format Abstract available

TOMIDA J, Morita Y, Shibayama K, Kikuchi K, et al
Diversity and microevolution of CRISPR loci in Helicobacter cinaedi.
PLoS One. 2017;12:e0186241.
PubMed Text format Abstract available

BORTHS MR, Stevens NJ
The first hyaenodont from the late Oligocene Nsungwe Formation of Tanzania: Paleoecological insights into the Paleogene-Neogene carnivore transition.
PLoS One. 2017;12:e0185301.
PubMed Text format Abstract available

BROSSAS JY, Gulin JEN, Bisio MMC, Chapelle M, et al
Secretome analysis of Trypanosoma cruzi by proteomics studies.
PLoS One. 2017;12:e0185504.
PubMed Text format Abstract available

KHOSHNOOD B, Dacklin I, Grabbe C
A proteomics approach to identify targets of the ubiquitin-like molecule Urm1 in Drosophila melanogaster.
PLoS One. 2017;12:e0185611.
PubMed Text format Abstract available

DESVARS-LARRIVE A, Pascal M, Gasqui P, Cosson JF, et al
Population genetics, community of parasites, and resistance to rodenticides in an urban brown rat (Rattus norvegicus) population.
PLoS One. 2017;12:e0184015.
PubMed Text format Abstract available

TIMOFEEV V, Bakhteeva I, Titareva G, Kopylov P, et al
Russian isolates enlarge the known geographic diversity of Francisella tularensis subsp. mediasiatica.
PLoS One. 2017;12:e0183714.
PubMed Text format Abstract available

HAGGLUND S, Blodorn K, Naslund K, Vargmar K, et al
Proteome analysis of bronchoalveolar lavage from calves infected with bovine respiratory syncytial virus-Insights in pathogenesis and perspectives for new treatments.
PLoS One. 2017;12:e0186594.
PubMed Text format Abstract available

SIKDAR S, Datta S, Datta S
EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments.
PLoS One. 2017;12:e0187287.
PubMed Text format Abstract available

CAO YY, Bian XC, Chen MX, Xia LR, et al
iTRAQ-based quantitative proteomic analysis in vernalization-treated faba bean (Vicia faba L.).
PLoS One. 2017;12:e0187436.
PubMed Text format Abstract available

AL HARIRI M, Elmedawar M, Zhu R, Jaffa MA, et al
Proteome profiling in the aorta and kidney of type 1 diabetic rats.
PLoS One. 2017;12:e0187752.
PubMed Text format Abstract available

LENIHAN JA, Saha O, Young PW
Proteomic analysis reveals novel ligands and substrates for LNX1 E3 ubiquitin ligase.
PLoS One. 2017;12:e0187352.
PubMed Text format Abstract available

YANG Z, Jia M, Liu G, Hao H, et al
Genomic sequencing identifies a few mutations driving the independent origin of primary liver tumors in a chronic hepatitis murine model.
PLoS One. 2017;12:e0187551.
PubMed Text format Abstract available

DRAPER JP, Waits LP, Adams JR, Seals CL, et al
Genetic health and population monitoring of two small black bear (Ursus americanus) populations in Alabama, with a regional perspective of genetic diversity and exchange.
PLoS One. 2017;12:e0186701.
PubMed Text format Abstract available

SALMIER A, Tirera S, de Thoisy B, Franc A, et al
Virome analysis of two sympatric bat species (Desmodus rotundus and Molossus molossus) in French Guiana.
PLoS One. 2017;12:e0186943.
PubMed Text format Abstract available

WAN TW, Higuchi W, Khokhlova OE, Hung WC, et al
Genomic comparison between Staphylococcus aureus GN strains clinically isolated from a familial infection case: IS1272 transposition through a novel inverted repeat-replacing mechanism.
PLoS One. 2017;12:e0187288.
PubMed Text format Abstract available

FEOKTISTOVA NY, Meschersky IG, Bogomolov PL, Sayan AS, et al
Phylogeographic structure of the Common hamster (Cricetus cricetus L.): Late Pleistocene connections between Caucasus and Western European populations.
PLoS One. 2017;12:e0187527.
PubMed Text format Abstract available

PEREZ-PARRA S, Chueca N, Alvarez M, Pasquau J, et al
High prevalence and diversity of HIV-1 non-B genetic forms due to immigration in southern Spain: A phylogeographic approach.
PLoS One. 2017;12:e0186928.
PubMed Text format Abstract available

XIE DF, Li MJ, Tan JB, Price M, et al
Phylogeography and genetic effects of habitat fragmentation on endemic Urophysa (Ranunculaceae) in Yungui Plateau and adjacent regions.
PLoS One. 2017;12:e0186378.
PubMed Text format Abstract available

LAVINIA PD, Nunez Bustos EO, Kopuchian C, Lijtmaer DA, et al
Barcoding the butterflies of southern South America: Species delimitation efficacy, cryptic diversity and geographic patterns of divergence.
PLoS One. 2017;12:e0186845.
PubMed Text format Abstract available

EIDSAA M, Stubbs L, Almaas E
Comparative analysis of weighted gene co-expression networks in human and mouse.
PLoS One. 2017;12:e0187611.
PubMed Text format Abstract available

BIEN SA, Auer PL, Harrison TA, Qu C, et al
Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data.
PLoS One. 2017;12:e0186518.
PubMed Text format Abstract available

VETRIVEL I, Mahajan S, Tyagi M, Hoffmann L, et al
Knowledge-based prediction of protein backbone conformation using a structural alphabet.
PLoS One. 2017;12:e0186215.
PubMed Text format Abstract available

TALBOT SL, Sage GK, Sonsthagen SA, Gravley MC, et al
Intraspecific evolutionary relationships among peregrine falcons in western North American high latitudes.
PLoS One. 2017;12:e0188185.
PubMed Text format Abstract available

SEBASTIAN A, Hum NR, Murugesh DK, Hatsell S, et al
Wnt co-receptors Lrp5 and Lrp6 differentially mediate Wnt3a signaling in osteoblasts.
PLoS One. 2017;12:e0188264.
PubMed Text format Abstract available

WALLQVIST A, Wang H, Zavaljevski N, Memisevic V, et al
Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions.
PLoS One. 2017;12:e0188071.
PubMed Text format Abstract available

SALDARRIAGA-CORDOBA M, Parkinson CL, Daza JM, Wuster W, et al
Phylogeography of the Central American lancehead Bothrops asper (SERPENTES: VIPERIDAE).
PLoS One. 2017;12:e0187969.
PubMed Text format Abstract available

TAI PWL, Wu H, van Wijnen AJ, Stein GS, et al
Genome-wide DNase hypersensitivity, and occupancy of RUNX2 and CTCF reveal a highly dynamic gene regulome during MC3T3 pre-osteoblast differentiation.
PLoS One. 2017;12:e0188056.
PubMed Text format Abstract available

AGREN J, Schafer MO, Forsgren E
Using whole genome sequencing to study American foulbrood epidemiology in honeybees.
PLoS One. 2017;12:e0187924.
PubMed Text format Abstract available

VISWANATHAN K, Verweij MC, John N, Malouli D, et al
Quantitative membrane proteomics reveals a role for tetraspanin enriched microdomains during entry of human cytomegalovirus.
PLoS One. 2017;12:e0187899.
PubMed Text format Abstract available

KAMALIDDIN C, Salnot V, Leduc M, Ezinmegnon S, et al
PFI1785w: A highly conserved protein associated with pregnancy associated malaria.
PLoS One. 2017;12:e0187817.
PubMed Text format Abstract available

LEI MG, Gupta RK, Lee CY
Proteomics of Staphylococcus aureus biofilm matrix in a rat model of orthopedic implant-associated infection.
PLoS One. 2017;12:e0187981.
PubMed Text format Abstract available

RIBEIRO T, Lemos F, Preto M, Azevedo J, et al
Cytotoxicity of portoamides in human cancer cells and analysis of the molecular mechanisms of action.
PLoS One. 2017;12:e0188817.
PubMed Text format Abstract available

REDDING DW, Lucas TCD, Blackburn TM, Jones KE, et al
Evaluating Bayesian spatial methods for modelling species distributions with clumped and restricted occurrence data.
PLoS One. 2017;12:e0187602.
PubMed Text format Abstract available

CAMPBELL MM, Susser E, Mall S, Mqulwana SG, et al
Using iterative learning to improve understanding during the informed consent process in a South African psychiatric genomics study.
PLoS One. 2017;12:e0188466.
PubMed Text format Abstract available

VEERA SINGHAM G, Othman AS, Lee CY
Phylogeography of the termite Macrotermes gilvus and insight into ancient dispersal corridors in Pleistocene Southeast Asia.
PLoS One. 2017;12:e0186690.
PubMed Text format Abstract available

SHEN C, Li X, Zhang R, Lin Z, et al
Genome-wide recombination rate variation in a recombination map of cotton.
PLoS One. 2017;12:e0188682.
PubMed Text format Abstract available

WANG SX, Zhu YL, Zhang DX, Shao H, et al
Genome-wide association study for grain yield and related traits in elite wheat varieties and advanced lines using SNP markers.
PLoS One. 2017;12:e0188662.
PubMed Text format Abstract available

HAILEMARIAM Z, Krucken J, Baumann M, Ahmed JS, et al
Molecular detection of tick-borne pathogens in cattle from Southwestern Ethiopia.
PLoS One. 2017;12:e0188248.
PubMed Text format Abstract available

BICER A, Orlando S, Islam ABMMK, Gallastegui E, et al
ChIP-Seq analysis identifies p27(Kip1)-target genes involved in cell adhesion and cell signalling in mouse embryonic fibroblasts.
PLoS One. 2017;12:e0187891.
PubMed Text format Abstract available

PILLAI VV, Weber DM, Phinney BS, Selvaraj V, et al
Profiling of proteins secreted in the bovine oviduct reveals diverse functions of this luminal microenvironment.
PLoS One. 2017;12:e0188105.
PubMed Text format Abstract available

ERDOGAN C, Kurt Z, Diri B
Estimation of the proteomic cancer co-expression sub networks by using association estimators.
PLoS One. 2017;12:e0188016.
PubMed Text format Abstract available

YILMAZ O, Patinote A, Nguyen TV, Com E, et al
Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio).
PLoS One. 2017;12:e0188084.
PubMed Text format Abstract available

JAGDAGSUREN D, Hayashida T, Takano M, Gombo E, et al
The second molecular epidemiological study of HIV infection in Mongolia between 2010 and 2016.
PLoS One. 2017;12:e0189605.
PubMed Text format Abstract available

ARAUJO SA, Soares AMDS, Silva CR, Almeida Junior EB, et al
In vitro anthelmintic effects of Spigelia anthelmia protein fractions against Haemonchus contortus.
PLoS One. 2017;12:e0189803.
PubMed Text format Abstract available

WANG S, Xiao SZ, Gu FF, Tang J, et al
Antimicrobial susceptibility and molecular epidemiology of clinical Enterobacter cloacae bloodstream isolates in Shanghai, China.
PLoS One. 2017;12:e0189713.
PubMed Text format Abstract available

BAUMSTEIGER J, Moyle PB, Aguilar A, O'Rourke SM, et al
Genomics clarifies taxonomic boundaries in a difficult species complex.
PLoS One. 2017;12:e0189417.
PubMed Text format Abstract available

PEREZ-RIVEROL Y, Kuhn M, Vizcaino JA, Hitz MP, et al
Accurate and fast feature selection workflow for high-dimensional omics data.
PLoS One. 2017;12:e0189875.
PubMed Text format Abstract available

PARMA D, Ferrer M, Luce L, Giliberto F, et al
RB1 gene mutations in Argentine retinoblastoma patients. Implications for genetic counseling.
PLoS One. 2017;12:e0189736.
PubMed Text format Abstract available

CAMACHO-ORTIZ A, Gutierrez-Delgado EM, Garcia-Mazcorro JF, Mendoza-Olazaran S, et al
Randomized clinical trial to evaluate the effect of fecal microbiota transplant for initial Clostridium difficile infection in intestinal microbiome.
PLoS One. 2017;12:e0189768.
PubMed Text format Abstract available

LIU X, Cao Y, Xue T, Wu R, et al
Genetic structure and diversity of Nodularia douglasiae (Bivalvia: Unionida) from the middle and lower Yangtze River drainage.
PLoS One. 2017;12:e0189737.
PubMed Text format Abstract available

HA S, Kim I, Takata T, Kinouchi T, et al
Identification of -amino acid-containing peptides in human serum.
PLoS One. 2017;12:e0189972.
PubMed Text format Abstract available

POPLAWSKI P, Wisniewski JR, Rijntjes E, Richards K, et al
Restoration of type 1 iodothyronine deiodinase expression in renal cancer cells downregulates oncoproteins and affects key metabolic pathways as well as anti-oxidative system.
PLoS One. 2017;12:e0190179.
PubMed Text format Abstract available

KONINI S, Janse van Rensburg EJ
Mean field analysis of algorithms for scale-free networks in molecular biology.
PLoS One. 2017;12:e0189866.
PubMed Text format Abstract available

MENEGHINE AK, Nielsen S, Varani AM, Thomas T, et al
Metagenomic analysis of soil and freshwater from zoo agricultural area with organic fertilization.
PLoS One. 2017;12:e0190178.
PubMed Text format Abstract available

LEE SH, Clark S, van der Werf JHJ
Estimation of genomic prediction accuracy from reference populations with varying degrees of relationship.
PLoS One. 2017;12:e0189775.
PubMed Text format Abstract available

JAFARI M, Ansari-Pour N, Azimzadeh S, Mirzaie M, et al
A logic-based dynamic modeling approach to explicate the evolution of the central dogma of molecular biology.
PLoS One. 2017;12:e0189922.
PubMed Text format Abstract available

MAHMOOD ASMA, Rao S, McGarvey P, Wu C, et al
eGARD: Extracting associations between genomic anomalies and drug responses from text.
PLoS One. 2017;12:e0189663.
PubMed Text format Abstract available

UFARTE L, Laville E, Duquesne S, Morgavi D, et al
Discovery of carbamate degrading enzymes by functional metagenomics.
PLoS One. 2017;12:e0189201.
PubMed Text format Abstract available

PAPINI A, Signorini MA, Foggi B, Della Giovampaola E, et al
History vs. legend: Retracing invasion and spread of Oxalis pes-caprae L. in Europe and the Mediterranean area.
PLoS One. 2017;12:e0190237.
PubMed Text format Abstract available

ANDRADE-SOUZA V, Silva JG, Hamada N
Phylogeography and population diversity of Simulium hirtipupa Lutz (Diptera: Simuliidae) based on mitochondrial COI sequences.
PLoS One. 2017;12:e0190091.
PubMed Text format Abstract available

January 2016

BARENHOLZ U, Keren L, Segal E, Milo R, et al
A Minimalistic Resource Allocation Model to Explain Ubiquitous Increase in Protein Expression with Growth Rate.
PLoS One. 2016;11:e0153344.
PubMed Text format Abstract available

QIAN B, Xue L, Huang H
Liver Transcriptome Analysis of the Large Yellow Croaker (Larimichthys crocea) during Fasting by Using RNA-Seq.
PLoS One. 2016;11:e0150240.
PubMed Text format Abstract available

CHEN J, Zhou A, Xie S, Wang C, et al
Comparative Proteomic Identification of Mature and Immature Sperm in the Catfish Cranoglanis bouderius.
PLoS One. 2016;11:e0151254.
PubMed Text format Abstract available

GOMPERT Z
A Continuous Correlated Beta Process Model for Genetic Ancestry in Admixed Populations.
PLoS One. 2016;11:e0151047.
PubMed Text format Abstract available

PICHAT C, Couvin D, Carret G, Fredenucci I, et al
Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhone Alpes Region, France.
PLoS One. 2016;11:e0153580.
PubMed Text format Abstract available

ALTMAIER E, Menni C, Heier M, Meisinger C, et al
The Pharmacogenetic Footprint of ACE Inhibition: A Population-Based Metabolomics Study.
PLoS One. 2016;11:e0153163.
PubMed Text format Abstract available

ARTEAGA A, Pyron RA, Penafiel N, Romero-Barreto P, et al
Comparative Phylogeography Reveals Cryptic Diversity and Repeated Patterns of Cladogenesis for Amphibians and Reptiles in Northwestern Ecuador.
PLoS One. 2016;11:e0151746.
PubMed Text format Abstract available

SELWYN JD, Hogan JD, Downey-Wall AM, Gurski LM, et al
Kin-Aggregations Explain Chaotic Genetic Patchiness, a Commonly Observed Genetic Pattern, in a Marine Fish.
PLoS One. 2016;11:e0153381.
PubMed Text format Abstract available

MANS J, Armah GE, Steele AD, Taylor MB, et al
Norovirus Epidemiology in Africa: A Review.
PLoS One. 2016;11:e0146280.
PubMed Text format Abstract available

FUMIAN TM, da Silva Ribeiro de Andrade J, Leite JP, Miagostovich MP, et al
Norovirus Recombinant Strains Isolated from Gastroenteritis Outbreaks in Southern Brazil, 2004-2011.
PLoS One. 2016;11:e0145391.
PubMed Text format Abstract available

LIM KL, Hewitt J, Sitabkhan A, Eden JS, et al
A Multi-Site Study of Norovirus Molecular Epidemiology in Australia and New Zealand, 2013-2014.
PLoS One. 2016;11:e0145254.
PubMed Text format Abstract available

ALLEN DJ, Trainor E, Callaghan A, O'Brien SJ, et al
Early Detection of Epidemic GII-4 Norovirus Strains in UK and Malawi: Role of Surveillance of Sporadic Acute Gastroenteritis in Anticipating Global Epidemics.
PLoS One. 2016;11:e0146972.
PubMed Text format Abstract available

NEELY BA, Wilkins CE, Marlow LA, Malyarenko D, et al
Proteotranscriptomic Analysis Reveals Stage Specific Changes in the Molecular Landscape of Clear-Cell Renal Cell Carcinoma.
PLoS One. 2016;11:e0154074.
PubMed Text format Abstract available

LIN Q, Luo W, Wan S, Gao Z, et al
De Novo Transcriptome Analysis of Two Seahorse Species (Hippocampus erectus and H. mohnikei) and the Development of Molecular Markers for Population Genetics.
PLoS One. 2016;11:e0154096.
PubMed Text format Abstract available

LEE SY, Kim GH, Yun SH, Choi CW, et al
Proteogenomic Characterization of Monocyclic Aromatic Hydrocarbon Degradation Pathways in the Aniline-Degrading Bacterium Burkholderia sp. K24.
PLoS One. 2016;11:e0154233.
PubMed Text format Abstract available

SINGH S, Dubey VK
Quantitative Proteome Analysis of Leishmania donovani under Spermidine Starvation.
PLoS One. 2016;11:e0154262.
PubMed Text format Abstract available

LIN G, Chai J, Yuan S, Mai C, et al
VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams.
PLoS One. 2016;11:e0154315.
PubMed Text format Abstract available

LI G, Reisig D, Miao J, Gould F, et al
Frequency of Cry1F Non-Recessive Resistance Alleles in North Carolina Field Populations of Spodoptera frugiperda (Lepidoptera: Noctuidae).
PLoS One. 2016;11:e0154492.
PubMed Text format Abstract available

KIM J, Ye A
Phylogenetic and Epigenetic Footprinting of the Putative Enhancers of the Peg3 Domain.
PLoS One. 2016;11:e0154216.
PubMed Text format Abstract available

YAMAGISHI J, Sato Y, Shinozaki N, Ye B, et al
Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes.
PLoS One. 2016;11:e0154389.
PubMed Text format Abstract available

MOL JP, Pires SF, Chapeaurouge AD, Perales J, et al
Proteomic Profile of Brucella abortus-Infected Bovine Chorioallantoic Membrane Explants.
PLoS One. 2016;11:e0154209.
PubMed Text format Abstract available

HEINRITZ SN, Weiss E, Eklund M, Aumiller T, et al
Intestinal Microbiota and Microbial Metabolites Are Changed in a Pig Model Fed a High-Fat/Low-Fiber or a Low-Fat/High-Fiber Diet.
PLoS One. 2016;11:e0154329.
PubMed Text format Abstract available

COOKE GM, Schlub TE, Sherwin WB, Ord TJ, et al
Understanding the Spatial Scale of Genetic Connectivity at Sea: Unique Insights from a Land Fish and a Meta-Analysis.
PLoS One. 2016;11:e0150991.
PubMed Text format Abstract available

SONI S, Raaijmakers AJ, Raaijmakers LM, Damen JM, et al
A Proteomics Approach to Identify New Putative Cardiac Intercalated Disk Proteins.
PLoS One. 2016;11:e0152231.
PubMed Text format Abstract available

GUO W, Feng X
OM-FBA: Integrate Transcriptomics Data with Flux Balance Analysis to Decipher the Cell Metabolism.
PLoS One. 2016;11:e0154188.
PubMed Text format Abstract available

ZHOU R, Kuang Y, Zhou J, Du X, et al
Nanonets Collect Cancer Secretome from Pericellular Space.
PLoS One. 2016;11:e0154126.
PubMed Text format Abstract available

ALVES DA SILVA AF, Machado FB, Pavarino EC, Biselli-Perico JM, et al
Trisomy 21 Alters DNA Methylation in Parent-of-Origin-Dependent and -Independent Manners.
PLoS One. 2016;11:e0154108.
PubMed Text format Abstract available

MIRANDA EA, Batalha-Filho H, Congrains C, Carvalho AF, et al
Phylogeography of Partamona rustica (Hymenoptera, Apidae), an Endemic Stingless Bee from the Neotropical Dry Forest Diagonal.
PLoS One. 2016;11:e0164441.
PubMed Text format Abstract available

BURTON LJ, Rivera M, Hawsawi O, Zou J, et al
Muscadine Grape Skin Extract Induces an Unfolded Protein Response-Mediated Autophagy in Prostate Cancer Cells: A TMT-Based Quantitative Proteomic Analysis.
PLoS One. 2016;11:e0164115.
PubMed Text format Abstract available

AZARIAN T, Maraqa NF, Cook RL, Johnson JA, et al
Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Neonatal Intensive Care Unit.
PLoS One. 2016;11:e0164397.
PubMed Text format Abstract available

KIM D, Jeon H, Ryu S, Koo S, et al
Proteomic Analysis of the Effect of Korean Red Ginseng in the Striatum of a Parkinson's Disease Mouse Model.
PLoS One. 2016;11:e0164906.
PubMed Text format Abstract available

ROVIRA-GRAELLS N, Aguilera-Simon S, Tinto-Font E, Cortes A, et al
New Assays to Characterise Growth-Related Phenotypes of Plasmodium falciparum Reveal Variation in Density-Dependent Growth Inhibition between Parasite Lines.
PLoS One. 2016;11:e0165358.
PubMed Text format Abstract available

LENNARD KS, Goosen RW, Blackburn JM
Bacterially-Associated Transcriptional Remodelling in a Distinct Genomic Subtype of Colorectal Cancer Provides a Plausible Molecular Basis for Disease Development.
PLoS One. 2016;11:e0166282.
PubMed Text format Abstract available

GUPTA S, Chaudhary K, Dhanda SK, Kumar R, et al
A Platform for Designing Genome-Based Personalized Immunotherapy or Vaccine against Cancer.
PLoS One. 2016;11:e0166372.
PubMed Text format Abstract available

COSKUN A, Baykal AT, Kazan D, Akgoz M, et al
Proteomic Analysis of Kidney Preservation Solutions Prior to Renal Transplantation.
PLoS One. 2016;11:e0168755.
PubMed Text format Abstract available

ZHANG F, Xu C, Ning L, Hu F, et al
Exploration of Serum Proteomic Profiling and Diagnostic Model That Differentiate Crohn's Disease and Intestinal Tuberculosis.
PLoS One. 2016;11:e0167109.
PubMed Text format Abstract available

WESTON C, Klobusicky J, Weston J, Connor J, et al
Aberrations in the Iron Regulatory Gene Signature Are Associated with Decreased Survival in Diffuse Infiltrating Gliomas.
PLoS One. 2016;11:e0166593.
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Identifying Causal Genes at the Multiple Sclerosis Associated Region 6q23 Using Capture Hi-C.
PLoS One. 2016;11:e0166923.
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CRISMAN TJ, Zelaya I, Laks DR, Zhao Y, et al
Identification of an Efficient Gene Expression Panel for Glioblastoma Classification.
PLoS One. 2016;11:e0164649.
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WU Y, Li YH, Yu SB, Li WG, et al
A Genome-Wide Transcriptional Analysis of Yeast-Hyphal Transition in Candida tropicalis by RNA-Seq.
PLoS One. 2016;11:e0166645.
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MISHRA PJ, Mishra PJ, Merlino G
Integrated Genomics Identifies miR-32/MCL-1 Pathway as a Critical Driver of Melanomagenesis: Implications for miR-Replacement and Combination Therapy.
PLoS One. 2016;11:e0165102.
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KORRODI-GREGORIO L, Soto-Cerrato V, Vitorino R, Fardilha M, et al
From Proteomic Analysis to Potential Therapeutic Targets: Functional Profile of Two Lung Cancer Cell Lines, A549 and SW900, Widely Studied in Pre-Clinical Research.
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SOUSA JD, Temudo MP, Hewlett BS, Camacho RJ, et al
Male Circumcision and the Epidemic Emergence of HIV-2 in West Africa.
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KANEMOTO K, Fukuta K, Kawai N, Tozawa K, et al
Genomic Landscape of Experimental Bladder Cancer in Rodents and Its Application to Human Bladder Cancer: Gene Amplification and Potential Overexpression of Cyp2a5/CYP2A6 Are Associated with the Invasive Phenotype.
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GHIANI A, D'Agostino N, Citterio S, Raiola A, et al
Impact of Wild Loci on the Allergenic Potential of Cultivated Tomato Fruits.
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IGUCHI S, Mizutani T, Hiramatsu K, Kikuchi K, et al
Rapid Acquisition of Linezolid Resistance in Methicillin-Resistant Staphylococcus aureus: Role of Hypermutation and Homologous Recombination.
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HORACIO AN, Silva-Costa C, Diamantino-Miranda J, Lopes JP, et al
Population Structure of Streptococcus pneumoniae Causing Invasive Disease in Adults in Portugal before PCV13 Availability for Adults: 2008-2011.
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PEREZ DEL MOLINO BERNAL IC, Lillebaek T, Pedersen MK, Martinez-Martinez L, et al
Genomic Diversity of Mycobacterium tuberculosis Complex Strains in Cantabria (Spain), a Moderate TB Incidence Setting.
PLoS One. 2016;11:e0157266.
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ROSSING K, Bosselmann HS, Gustafsson F, Zhang ZY, et al
Urinary Proteomics Pilot Study for Biomarker Discovery and Diagnosis in Heart Failure with Reduced Ejection Fraction.
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ZHANG M, Schmitt-Ulms G, Sato C, Xi Z, et al
Drug Repositioning for Alzheimer's Disease Based on Systematic 'omics' Data Mining.
PLoS One. 2016;11:e0168812.
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KORONA-GLOWNIAK I, Maj M, Siwiec R, Niedzielski A, et al
Molecular Epidemiology of Streptococcus pneumoniae Isolates from Children with Recurrent Upper Respiratory Tract Infections.
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LOHKAMP LN, Schinz M, Gehlhaar C, Guse K, et al
MGMT Promoter Methylation and BRAF V600E Mutations Are Helpful Markers to Discriminate Pleomorphic Xanthoastrocytoma from Giant Cell Glioblastoma.
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ZHANG C, Guo L, Chu X, Shen L, et al
Presence of the Panton-Valentine Leukocidin Genes in Methicillin-Resistant Staphylococcus aureus Is Associated with Severity and Clinical Outcome of Hospital-Acquired Pneumonia in a Single Center Study in China.
PLoS One. 2016;11:e0156704.
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PALANIAPPAN A, Ramar K, Ramalingam S
Computational Identification of Novel Stage-Specific Biomarkers in Colorectal Cancer Progression.
PLoS One. 2016;11:e0156665.
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KARDOUSH MI, Ward BJ, Ndao M
Identification of Candidate Serum Biomarkers for Schistosoma mansoni Infected Mice Using Multiple Proteomic Platforms.
PLoS One. 2016;11:e0154465.
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YONEYAMA T, Ohtsuki S, Honda K, Kobayashi M, et al
Identification of IGFBP2 and IGFBP3 As Compensatory Biomarkers for CA19-9 in Early-Stage Pancreatic Cancer Using a Combination of Antibody-Based and LC-MS/MS-Based Proteomics.
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KONG FY, Wei X, Zhou K, Hu W, et al
Bioinformatics Analysis Reveals Distinct Molecular Characteristics of Hepatitis B-Related Hepatocellular Carcinomas from Very Early to Advanced Barcelona Clinic Liver Cancer Stages.
PLoS One. 2016;11:e0158286.
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MORSE D, Webster W, Kalanon M, Langsley G, et al
Plasmodium falciparum Rab1A Localizes to Rhoptries in Schizonts.
PLoS One. 2016;11:e0158174.
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CEVIK O, Baykal AT, Sener A
Platelets Proteomic Profiles of Acute Ischemic Stroke Patients.
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KALLO G, Emri M, Varga Z, Ujhelyi B, et al
Changes in the Chemical Barrier Composition of Tears in Alzheimer's Disease Reveal Potential Tear Diagnostic Biomarkers.
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NAGAI-OKATANI C, Minamino N
Aberrant Glycosylation in the Left Ventricle and Plasma of Rats with Cardiac Hypertrophy and Heart Failure.
PLoS One. 2016;11:e0150210.
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Molecular Evolution and Phylodynamics of Acute Hepatitis B Virus in Japan.
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EYBPOOSH S, Bahrampour A, Karamouzian M, Azadmanesh K, et al
Spatio-Temporal History of HIV-1 CRF35_AD in Afghanistan and Iran.
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ARRUDA MB, Campagnari F, de Almeida TB, Couto-Fernandez JC, et al
Single Nucleotide Polymorphisms in Cellular Drug Transporters Are Associated with Intolerance to Antiretroviral Therapy in Brazilian HIV-1 Positive Individuals.
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HUNG WC, Wan TW, Kuo YC, Yamamoto T, et al
Molecular Evolutionary Pathways toward Two Successful Community-Associated but Multidrug-Resistant ST59 Methicillin-Resistant Staphylococcus aureus Lineages in Taiwan: Dynamic Modes of Mobile Genetic Element Salvages.
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FAKSRI K, Tan JH, Disratthakit A, Xia E, et al
Whole-Genome Sequencing Analysis of Serially Isolated Multi-Drug and Extensively Drug Resistant Mycobacterium tuberculosis from Thai Patients.
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Comparative Genomics Analysis of Streptococcus tigurinus Strains Identifies Genetic Elements Specifically and Uniquely Present in Highly Virulent Strains.
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Identification of Phosphorylated Cyclin-Dependent Kinase 1 Associated with Colorectal Cancer Survival Using Label-Free Quantitative Analyses.
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SOO YEAN CY, Selva Raju K, Xavier R, Subramaniam S, et al
Molecular Detection of Methicillin-Resistant Staphylococcus aureus by Non-Protein Coding RNA-Mediated Monoplex Polymerase Chain Reaction.
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KANONIDIS EI, Roy MM, Deighton RF, Le Bihan T, et al
Protein Co-Expression Analysis as a Strategy to Complement a Standard Quantitative Proteomics Approach: Case of a Glioblastoma Multiforme Study.
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Epidemic History of Hepatitis C Virus among Patients with Inherited Bleeding Disorders in Iran.
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HENDERSON MC, Hollingsworth AB, Gordon K, Silver M, et al
Integration of Serum Protein Biomarker and Tumor Associated Autoantibody Expression Data Increases the Ability of a Blood-Based Proteomic Assay to Identify Breast Cancer.
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Triethylene Glycol Up-Regulates Virulence-Associated Genes and Proteins in Streptococcus mutans.
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Modulation of Pathways Underlying Distinct Cell Death Mechanisms in Two Human Lung Cancer Cell Lines in Response to SN1 Methylating Agents Treatment.
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