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Articles published in PLoS One

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Single Articles


    January 2022
  1. ARANA C, Liang C, Brock M, Zhang B, et al
    A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome.
    PLoS One. 2022;17:e0261014.
    PubMed     Abstract available


  2. HUANG K, Wang C, Vagts C, Raguveer V, et al
    Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single-cell analysis.
    PLoS One. 2022;17:e0261242.
    PubMed     Abstract available


  3. MIRANDA GHN, Alencar de Oliveira Lima L, Bittencourt LO, Dos Santos SM, et al
    Effects of long-term fluoride exposure are associated with oxidative biochemistry impairment and global proteomic modulation, but not genotoxicity, in parotid glands of mice.
    PLoS One. 2022;17:e0261252.
    PubMed     Abstract available


  4. DILMAGHANI S, Brust MR, Ribeiro CHC, Kieffer E, et al
    From communities to protein complexes: A local community detection algorithm on PPI networks.
    PLoS One. 2022;17:e0260484.
    PubMed     Abstract available


  5. PIERRE N, Wamalwa LN, Muiru WM, Simon B, et al
    Genetic diversity of local and introduced cassava germplasm in Burundi using DArTseq molecular analyses.
    PLoS One. 2022;17:e0256002.
    PubMed     Abstract available


  6. HAMMOND J, Klapwijk JE, Riedijk S, Lou S, et al
    Assessing women's preferences towards tests that may reveal uncertain results from prenatal genomic testing: Development of attributes for a discrete choice experiment, using a mixed-methods design.
    PLoS One. 2022;17:e0261898.
    PubMed     Abstract available


  7. IGATA T, Tanaka H, Etoh K, Hong S, et al
    Loss of the transcription repressor ZHX3 induces senescence-associated gene expression and mitochondrial-nucleolar activation.
    PLoS One. 2022;17:e0262488.
    PubMed     Abstract available


  8. COELHO DE SOUSA I, Nascimento M, de Castro Sant'anna I, Teixeira Caixeta E, et al
    Marker effects and heritability estimates using additive-dominance genomic architectures via artificial neural networks in Coffea canephora.
    PLoS One. 2022;17:e0262055.
    PubMed     Abstract available


  9. EL MOUZAN M, Assiri A, Al Sarkhy A, Alasmi M, et al
    Viral dysbiosis in children with new-onset celiac disease.
    PLoS One. 2022;17:e0262108.
    PubMed     Abstract available


  10. ELBEHIRY A, Aldubaib M, Al Rugaie O, Marzouk E, et al
    Proteomics-based screening and antibiotic resistance assessment of clinical and sub-clinical Brucella species: An evolution of brucellosis infection control.
    PLoS One. 2022;17:e0262551.
    PubMed     Abstract available


  11. KAPINOS A, Aghamalian P, Capehart E, Alag A, et al
    Novel Cluster AZ Arthrobacter phages Powerpuff, Lego, and YesChef exhibit close functional relationships with Microbacterium phages.
    PLoS One. 2022;17:e0262556.
    PubMed     Abstract available


  12. BENNETT NE, Mirabal Torres SE, Gray PB
    Exploratory content analysis of direct-to-consumer pet genomics: What is being marketed and what are consumers saying?
    PLoS One. 2022;17:e0261694.
    PubMed     Abstract available


  13. KIM SS, Kycia I, Karski M, Ma RK, et al
    DNAJB1-PRKACA in HEK293T cells induces LINC00473 overexpression that depends on PKA signaling.
    PLoS One. 2022;17:e0263829.
    PubMed     Abstract available


  14. PADMANABHAN H, Hassan NT, Wong SW, Lee YQ, et al
    Psychosocial outcome and health behaviour intent of breast cancer patients with BRCA1/2 and PALB2 pathogenic variants unselected by a priori risk.
    PLoS One. 2022;17:e0263675.
    PubMed     Abstract available


  15. CONTE F, Sibilio P, Grimaldi AM, Salvatore M, et al
    In silico recognition of a prognostic signature in basal-like breast cancer patients.
    PLoS One. 2022;17:e0264024.
    PubMed     Abstract available


  16. KARADZOVSKA-KOTEVSKA M, Brunnstrom H, Kosieradzki J, Ek L, et al
    Feasibility of EBUS-TBNA for histopathological and molecular diagnostics of NSCLC-A retrospective single-center experience.
    PLoS One. 2022;17:e0263342.
    PubMed     Abstract available


  17. BORBA RS, Hoover SE, Currie RW, Giovenazzo P, et al
    Phenomic analysis of the honey bee pathogen-web and its dynamics on colony productivity, health and social immunity behaviors.
    PLoS One. 2022;17:e0263273.
    PubMed     Abstract available


  18. WARD SJ, McMahan CD, Khakurel B, Wright AM, et al
    Genomic data support the taxonomic validity of Middle American livebearers Poeciliopsis gracilis and Poeciliopsis pleurospilus (Cyprinodontiformes: Poeciliidae).
    PLoS One. 2022;17:e0262687.
    PubMed     Abstract available


  19. VANDENBON A
    Evaluation of critical data processing steps for reliable prediction of gene co-expression from large collections of RNA-seq data.
    PLoS One. 2022;17:e0263344.
    PubMed     Abstract available


  20. GOLJAN E, Abouelhoda M, ElKalioby MM, Jabaan A, et al
    Identification of pharmacogenetic variants from large scale next generation sequencing data in the Saudi population.
    PLoS One. 2022;17:e0263137.
    PubMed     Abstract available


  21. SHAHDADI A, von Wyschetzki K, Liu HC, Chu KH, et al
    Molecular phylogeography reveals multiple Pleistocene divergence events in estuarine crabs from the tropical West Pacific.
    PLoS One. 2022;17:e0262122.
    PubMed     Abstract available


  22. PECANKOVA K, Pecherkova P, Gasova Z, Sovova Z, et al
    Proteome changes of plasma-derived extracellular vesicles in patients with myelodysplastic syndrome.
    PLoS One. 2022;17:e0262484.
    PubMed     Abstract available


  23. MILLER JK, Elenberg K, Dubrawski A
    Forecasting emergence of COVID-19 variants of concern.
    PLoS One. 2022;17:e0264198.
    PubMed     Abstract available


  24. WANKAEW N, Chariyavilaskul P, Chamnanphon M, Assawapitaksakul A, et al
    Genotypic and phenotypic landscapes of 51 pharmacogenes derived from whole-genome sequencing in a Thai population.
    PLoS One. 2022;17:e0263621.
    PubMed     Abstract available


  25. CAIRO A, Iorio MV, Spena S, Tagliabue E, et al
    Worldwide SARS-CoV-2 haplotype distribution in early pandemic.
    PLoS One. 2022;17:e0263705.
    PubMed     Abstract available


  26. BISCHOF EA, Schluter N, Lehmann J
    Geometric morphometric analysis of morphologic disparity, intraspecific variation and ontogenetic allometry of beyrichitine ammonoids.
    PLoS One. 2022;17:e0263524.
    PubMed     Abstract available


  27. JESKE M, Vasquez E, Fullerton SM, Saperstein A, et al
    Beyond inclusion: Enacting team equity in precision medicine research.
    PLoS One. 2022;17:e0263750.
    PubMed     Abstract available


  28. HONG S, Park KH, Lee YE, Lee JE, et al
    Antibody microarray analysis of amniotic fluid proteomes in women with cervical insufficiency and short cervix, and their association with pregnancy latency length.
    PLoS One. 2022;17:e0263586.
    PubMed     Abstract available


  29. WU Y, Zhu Y, Xie N, Wang H, et al
    A network pharmacology approach to explore active compounds and pharmacological mechanisms of a patented Chinese herbal medicine in the treatment of endometriosis.
    PLoS One. 2022;17:e0263614.
    PubMed     Abstract available


  30. CONRAD MS, Gardner ML, Miguel C, Freitas MA, et al
    Proteomic analysis of the umbilical cord in fetal growth restriction and preeclampsia.
    PLoS One. 2022;17:e0262041.
    PubMed     Abstract available


  31. GARDINER LJ, Carrieri AP, Bingham K, Macluskie G, et al
    Combining explainable machine learning, demographic and multi-omic data to inform precision medicine strategies for inflammatory bowel disease.
    PLoS One. 2022;17:e0263248.
    PubMed     Abstract available


  32. HARTMANN K, Seweryn M, Sadee W
    Interpreting coronary artery disease GWAS results: A functional genomics approach assessing biological significance.
    PLoS One. 2022;17:e0244904.
    PubMed     Abstract available


  33. CHEN Y, Kaplan Lease N, Gin JW, Ogorzalek TL, et al
    Modular automated bottom-up proteomic sample preparation for high-throughput applications.
    PLoS One. 2022;17:e0264467.
    PubMed     Abstract available


  34. PIE MR, Caron FS
    Geographical range overlap networks and the macroecology of species co-occurrence.
    PLoS One. 2022;17:e0266275.
    PubMed     Abstract available


  35. LI J, Xu H, McIndoe RA
    A novel network based linear model for prioritization of synergistic drug combinations.
    PLoS One. 2022;17:e0266382.
    PubMed     Abstract available


  36. PFENNINGER M, Doria HB, Nickel J, Thielsch A, et al
    Spontaneous rate of clonal single nucleotide mutations in Daphnia galeata.
    PLoS One. 2022;17:e0265632.
    PubMed     Abstract available


  37. WEISS L, Gaelings L, Reiner T, Mergner J, et al
    Posttranslational modification of the RHO of plants protein RACB by phosphorylation and cross-kingdom conserved ubiquitination.
    PLoS One. 2022;17:e0258924.
    PubMed     Abstract available


  38. SHU J, Ma X, Ma H, Huang Q, et al
    Transcriptomic, proteomic, metabolomic, and functional genomic approaches of Brassica napus L. during salt stress.
    PLoS One. 2022;17:e0262587.
    PubMed     Abstract available


  39. SUNDERHAUS A, Imran R, Enoh E, Adedeji A, et al
    Comparative expression of soluble, active human kinases in specialized bacterial strains.
    PLoS One. 2022;17:e0267226.
    PubMed     Abstract available


  40. AKBARI ROKN ABADI S, Mohammadi A, Koohi S
    WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs.
    PLoS One. 2022;17:e0267106.
    PubMed     Abstract available


  41. LYALINA S, Stepanauskas R, Wu F, Sanjabi S, et al
    Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community.
    PLoS One. 2022;17:e0261795.
    PubMed     Abstract available


  42. MUSHTAQ S, Shafiq M, Ashraf T, Haider MS, et al
    Enumeration of citrus endophytic bacterial communities based on illumine metagenomics technique.
    PLoS One. 2022;17:e0263144.
    PubMed     Abstract available


  43. MILBURY CA, Creeden J, Yip WK, Smith DL, et al
    Clinical and analytical validation of FoundationOne(R)CDx, a comprehensive genomic profiling assay for solid tumors.
    PLoS One. 2022;17:e0264138.
    PubMed     Abstract available


  44. CASSELBRANT A, Fedorowski A, Frantz S, Engstrom G, et al
    Common physiologic and proteomic biomarkers in pulmonary and coronary artery disease.
    PLoS One. 2022;17:e0264376.
    PubMed     Abstract available


  45. MORADI S, Kamal A, Aboulkheyr Es H, Farhadi F, et al
    Pan-cancer analysis of microRNA expression profiles highlights microRNAs enriched in normal body cells as effective suppressors of multiple tumor types: A study based on TCGA database.
    PLoS One. 2022;17:e0267291.
    PubMed     Abstract available


  46. DUTTMANN C, Flores B, Sheleby-Elias J, Castillo G, et al
    Africanized honeybee population (Apis mellifera L.) in Nicaragua: Forewing length and mitotype lineages.
    PLoS One. 2022;17:e0267600.
    PubMed     Abstract available


  47. LIPMAN D, Safo SE, Chekouo T
    Multi-omic analysis reveals enriched pathways associated with COVID-19 and COVID-19 severity.
    PLoS One. 2022;17:e0267047.
    PubMed     Abstract available


  48. NOURANI L, Abouie Mehrizi A, Zakeri S, Djadid ND, et al
    Untangling population structure and genetic diversity of reticulocyte binding protein 2b (PvRBP2b) erythrocytic stage vaccine candidate in worldwide Plasmodium vivax isolates.
    PLoS One. 2022;17:e0266067.
    PubMed     Abstract available


  49. CAPPA EP, Klutsch JG, Sebastian-Azcona J, Ratcliffe B, et al
    Integrating genomic information and productivity and climate-adaptability traits into a regional white spruce breeding program.
    PLoS One. 2022;17:e0264549.
    PubMed     Abstract available


  50. ZHOU Z, Tang J, Cao Q, Li Z, et al
    Differential response of physiology and metabolic response to drought stress in different sweetpotato cultivars.
    PLoS One. 2022;17:e0264847.
    PubMed     Abstract available


  51. MUKHOPADHYAY S, Saha S, Chakraborty S, Prasad P, et al
    Differential colitis susceptibility of Th1- and Th2-biased mice: A multi-omics approach.
    PLoS One. 2022;17:e0264400.
    PubMed     Abstract available


  52. MAGHRADZE N, Jugheli L, Borrell S, Tukvadze N, et al
    Developing customized stepwise MIRU-VNTR typing for tuberculosis surveillance in Georgia.
    PLoS One. 2022;17:e0264472.
    PubMed     Abstract available


  53. LI S, Counter CM
    Non-canonical genomic driver mutations of urethane carcinogenesis.
    PLoS One. 2022;17:e0267147.
    PubMed     Abstract available


  54. DIEYE Y, Hull DM, Wane AA, Harden L, et al
    Genomics of human and chicken Salmonella isolates in Senegal: Broilers as a source of antimicrobial resistance and potentially invasive nontyphoidal salmonellosis infections.
    PLoS One. 2022;17:e0266025.
    PubMed     Abstract available


  55. ANTHONYSAMY WJB, Dreslik MJ, Baker SJ, Davis MA, et al
    Limited gene flow and pronounced population genetic structure of Eastern Massasauga (Sistrurus catenatus) in a Midwestern prairie remnant.
    PLoS One. 2022;17:e0265666.
    PubMed     Abstract available


  56. YASUDA T, Tahara K, Sawada T
    Detection of salivary citrullinated cytokeratin 13 in healthy individuals and patients with rheumatoid arthritis by proteomics analysis.
    PLoS One. 2022;17:e0265687.
    PubMed     Abstract available


  57. DIEKI R, Nsi Emvo E, Akue JP
    Comparison of six methods for Loa loa genomic DNA extraction.
    PLoS One. 2022;17:e0265582.
    PubMed     Abstract available


  58. GUO YH, Halasan LC, Wang HY, Lin HC, et al
    High migratory propensity constitutes a single stock of an exploited cutlassfish species in the Northwest Pacific: A microsatellite approach.
    PLoS One. 2022;17:e0265548.
    PubMed     Abstract available


  59. DAVIK J, Roen D, Lysoe E, Buti M, et al
    A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.).
    PLoS One. 2022;17:e0265096.
    PubMed     Abstract available


  60. JI G, Chang H, Yang M, Chen H, et al
    The mitochondrial proteomic changes of rat hippocampus induced by 28-day simulated microgravity.
    PLoS One. 2022;17:e0265108.
    PubMed     Abstract available


  61. HARFORD TJ, Rezaee F, Dye BR, Fan J, et al
    RSV-induced changes in a 3-dimensional organoid model of human fetal lungs.
    PLoS One. 2022;17:e0265094.
    PubMed     Abstract available


  62. CARLAND M, Pedersen H, Bose M, Novkovic B, et al
    EZTraits: A programmable tool to evaluate multi-site deterministic traits.
    PLoS One. 2022;17:e0259327.
    PubMed     Abstract available


  63. KHAN MN, Ahmed I, Ud Din I, Noureldeen A, et al
    Proteomic insight into soybean response to flooding stress reveals changes in energy metabolism and cell wall modifications.
    PLoS One. 2022;17:e0264453.
    PubMed     Abstract available


  64. LOVE TM, Anaya DA, Prime MS, Ardolino L, et al
    Development and validation of ACTE-MTB: A tool to systematically assess the maturity of molecular tumor boards.
    PLoS One. 2022;17:e0268477.
    PubMed     Abstract available


  65. HOLM M, Saraswat M, Joenvaara S, Seppo A, et al
    Quantitative glycoproteomics of human milk and association with atopic disease.
    PLoS One. 2022;17:e0267967.
    PubMed     Abstract available


  66. DELIHAS N
    An ancestral genomic sequence that serves as a nucleation site for de novo gene birth.
    PLoS One. 2022;17:e0267864.
    PubMed     Abstract available


  67. VOLYNKINA A, Lisitskaya Y, Kolosov A, Shaposhnikova L, et al
    Molecular epidemiology of Crimean-Congo hemorrhagic fever virus in Russia.
    PLoS One. 2022;17:e0266177.
    PubMed     Abstract available


  68. VENTRESCA MILLER AR, Wilkin S, Hendy J, Turbat T, et al
    The spread of herds and horses into the Altai: How livestock and dairying drove social complexity in Mongolia.
    PLoS One. 2022;17:e0265775.
    PubMed     Abstract available


  69. LANG J
    MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction.
    PLoS One. 2022;17:e0267066.
    PubMed     Abstract available


  70. GENISH I, Gabay B, Ruban A, Goldshmit Y, et al
    Electroporation-based proteome sampling ex vivo enables the detection of brain melanoma protein signatures in a location proximate to visible tumor margins.
    PLoS One. 2022;17:e0265866.
    PubMed     Abstract available


  71. ARORA D, Park JE, Lim D, Cho IC, et al
    Multi-omics approaches for comprehensive analysis and understanding of the immune response in the miniature pig breed.
    PLoS One. 2022;17:e0263035.
    PubMed     Abstract available


  72. COLLER HA, Beggs S, Andrews S, Maloy J, et al
    Bruins-in-Genomics: Evaluation of the impact of a UCLA undergraduate summer program in computational biology on participating students.
    PLoS One. 2022;17:e0268861.
    PubMed     Abstract available


  73. PAUDEL D, Kuramitsu Y, Uehara O, Morikawa T, et al
    Proteomic and microbiota analyses of the oral cavity during psychological stress.
    PLoS One. 2022;17:e0268155.
    PubMed     Abstract available


  74. HUANG RDL, Nguyen XT, Peloso GM, Trinder M, et al
    Genome-wide and phenome-wide analysis of ideal cardiovascular health in the VA Million Veteran Program.
    PLoS One. 2022;17:e0267900.
    PubMed     Abstract available


  75. ANDREEV VP, Helmuth ME, Liu G, Smith AR, et al
    Subtyping of common complex diseases and disorders by integrating heterogeneous data. Identifying clusters among women with lower urinary tract symptoms in the LURN study.
    PLoS One. 2022;17:e0268547.
    PubMed     Abstract available


  76. BLAGEC K, Swen JJ, Koopmann R, Cheung KC, et al
    Pharmacogenomics decision support in the U-PGx project: Results and advice from clinical implementation across seven European countries.
    PLoS One. 2022;17:e0268534.
    PubMed     Abstract available


  77. AUTERI GG, Marchan-Rivadeneira MR, Olson DH, Knowles LL, et al
    Landscape connectivity among coastal giant salamander (Dicamptodon tenebrosus) populations shows no association with land use, fire frequency, or river drainage but exhibits genetic signatures of potential conservation concern.
    PLoS One. 2022;17:e0268882.
    PubMed     Abstract available


  78. FROMMLET F, Szulc P, Konig F, Bogdan M, et al
    Selecting predictive biomarkers from genomic data.
    PLoS One. 2022;17:e0269369.
    PubMed     Abstract available


  79. MARBUN VMG, Erlina L, Lalisang TJM
    Genomic landscape of pathogenic mutation of APC, KRAS, TP53, PIK3CA, and MLH1 in Indonesian colorectal cancer.
    PLoS One. 2022;17:e0267090.
    PubMed     Abstract available


  80. ZHANG X, Takeuchi T, Takeda A, Mochizuki H, et al
    Comparison of serum and plasma as a source of blood extracellular vesicles: Increased levels of platelet-derived particles in serum extracellular vesicle fractions alter content profiles from plasma extracellular vesicle fractions.
    PLoS One. 2022;17:e0270634.
    PubMed     Abstract available


  81. CHEN M, Yang Z, Gan H, Wang Y, et al
    Investigation into potential mechanisms of metabolic syndrome by integrative analysis of metabolomics and proteomics.
    PLoS One. 2022;17:e0270593.
    PubMed     Abstract available


  82. MATEUS ID, Auxier B, Ndiaye MMS, Cruz J, et al
    Reciprocal recombination genomic signatures in the symbiotic arbuscular mycorrhizal fungi Rhizophagus irregularis.
    PLoS One. 2022;17:e0270481.
    PubMed     Abstract available


  83. ALBRECHT S, Andreani T, Andrade-Navarro MA, Fontaine JF, et al
    Single-cell specific and interpretable machine learning models for sparse scChIP-seq data imputation.
    PLoS One. 2022;17:e0270043.
    PubMed     Abstract available


  84. ROSE J, Basisty N, Zee T, Wehrfritz C, et al
    Comprehensive proteomic quantification of bladder stone progression in a cystinuric mouse model using data-independent acquisitions.
    PLoS One. 2022;17:e0250137.
    PubMed     Abstract available


  85. HUBBS NW, Hurt CR, Niedzwiecki J, Leckie B, et al
    Conservation genomics of urban populations of Streamside Salamander (Ambystoma barbouri).
    PLoS One. 2022;17:e0260178.
    PubMed     Abstract available


  86. VICCO A, Caccuri F, Messali S, Vitiello A, et al
    Genomic surveillance of SARS-CoV-2 in patients presenting neurological manifestations.
    PLoS One. 2022;17:e0270024.
    PubMed     Abstract available


  87. SHIMIZU M, Mihara T, Ohara J, Inoue K, et al
    Relationship between mortality and molecular epidemiology of methicillin-resistant Staphylococcus aureus bacteremia.
    PLoS One. 2022;17:e0271115.
    PubMed     Abstract available


  88. WILDING-MCBRIDE D, Dagley LF, Spall SK, Infusini G, et al
    Simplifying MS1 and MS2 spectra to achieve lower mass error, more dynamic range, and higher peptide identification confidence on the Bruker timsTOF Pro.
    PLoS One. 2022;17:e0271025.
    PubMed     Abstract available


  89. LEE JE, Dan K, Kim HJ, Kim YM, et al
    Plasma proteomic analysis to identify potential biomarkers of histologic chorioamnionitis in women with preterm premature rupture of membranes.
    PLoS One. 2022;17:e0270884.
    PubMed     Abstract available


  90. SHIRAI K, Hikita H, Sakane S, Narumi R, et al
    Serum amyloid P component and pro-platelet basic protein in extracellular vesicles or serum are novel markers of liver fibrosis in chronic hepatitis C patients.
    PLoS One. 2022;17:e0271020.
    PubMed     Abstract available


  91. YAO R, Guo R, Liu Y, Kou Z, et al
    Identification and phylogenetic analysis of the genus Syringa based on chloroplast genomic DNA barcoding.
    PLoS One. 2022;17:e0271633.
    PubMed     Abstract available


  92. BHARDWAJ V, Dela Cruz M, Subramanyam D, Kumar R, et al
    Exercise-induced myokines downregulates the ACE2 level in bronchial epithelial cells: Implications for SARS-CoV-2 prevention.
    PLoS One. 2022;17:e0271303.
    PubMed     Abstract available


  93. DARADICS N, Horvath G, Tretter L, Paal A, et al
    The effect of Cyclophilin D depletion on liver regeneration following associating liver partition and portal vein ligation for staged hepatectomy.
    PLoS One. 2022;17:e0271606.
    PubMed     Abstract available


  94. SMITH RD, Puzey JR, Conradi Smith GD
    Population genetics of transposable element load: A mechanistic account of observed overdispersion.
    PLoS One. 2022;17:e0270839.
    PubMed     Abstract available


  95. CHENG JE, Su P, Zhang ZH, Zheng LM, et al
    Metagenomic analysis of the dynamical conversion of photosynthetic bacterial communities in different crop fields over different growth periods.
    PLoS One. 2022;17:e0262517.
    PubMed     Abstract available


  96. BARIK SR, Pandit E, Sanghamitra P, Mohanty SP, et al
    Unraveling the genomic regions controlling the seed vigour index, root growth parameters and germination per cent in rice.
    PLoS One. 2022;17:e0267303.
    PubMed     Abstract available


  97. MORAO LG, Manzine LR, Clementino LOD, Wrenger C, et al
    A scalable screening of E. coli strains for recombinant protein expression.
    PLoS One. 2022;17:e0271403.
    PubMed     Abstract available


  98. WONG S, Ehrhart EJ, Stewart S, Zismann V, et al
    Genomic landscapes of canine splenic angiosarcoma (hemangiosarcoma) contain extensive heterogeneity within and between patients.
    PLoS One. 2022;17:e0264986.
    PubMed     Abstract available


  99. SHARIF N, Alzahrani KJ, Ahmed SN, Khan A, et al
    Genomic surveillance, evolution and global transmission of SARS-CoV-2 during 2019-2022.
    PLoS One. 2022;17:e0271074.
    PubMed     Abstract available


  100. LEE SB, Shin JY, Kwon NJ, Kim C, et al
    ClinPharmSeq: A targeted sequencing panel for clinical pharmacogenetics implementation.
    PLoS One. 2022;17:e0272129.
    PubMed     Abstract available


  101. ADEBAYO IA, Habib MAH, Sarmiento ME, Acosta A, et al
    Proteomic analysis of Malaysian Horseshoe crab (Tachypleus gigas) hemocytes gives insights into its innate immunity host defence system and other biological processes.
    PLoS One. 2022;17:e0272799.
    PubMed     Abstract available


  102. YAMANO R, Yu J, Jiang C, Harjuno Condro Haditomo A, et al
    Taxonomic revision of the genus Amphritea supported by genomic and in silico chemotaxonomic analyses, and the proposal of Aliamphritea gen. nov.
    PLoS One. 2022;17:e0271174.
    PubMed     Abstract available


  103. NIKITUSHKIN V, Shleeva M, Loginov D, Dycka F F, et al
    Shotgun proteomic profiling of dormant, 'non-culturable' Mycobacterium tuberculosis.
    PLoS One. 2022;17:e0269847.
    PubMed     Abstract available


  104. OKENDO J, Musanabaganwa C, Mwangi P, Nyaga M, et al
    SARS-CoV-2-positive patients display considerable differences in proteome diversity in urine, nasopharyngeal, gargle solution and bronchoalveolar lavage fluid samples.
    PLoS One. 2022;17:e0271870.
    PubMed     Abstract available


  105. LI XN, Adnan A, Hadi S, Al-Qahtani WS, et al
    Genetic characterization of the highlander Tibetan population from Qinghai-Tibet Plateau revealed by X chromosomal STRs.
    PLoS One. 2022;17:e0271769.
    PubMed     Abstract available


  106. MUKHERJEE M, Eby M, Wang S, Lara-Millan A, et al
    Medicalizing risk: How experts and consumers manage uncertainty in genetic health testing.
    PLoS One. 2022;17:e0270430.
    PubMed     Abstract available


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    Crinet: A computational tool to infer genome-wide competing endogenous RNA (ceRNA) interactions.
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    PubMed     Abstract available


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    Single-cell RNAseq and longitudinal proteomic analysis of a novel semi-spontaneous urothelial cancer model reveals tumor cell heterogeneity and pretumoral urine protein alterations.
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    Systematics and phylogeography of the Brazilian Atlantic Forest endemic harvestmen Neosadocus Mello-Leitao, 1926 (Arachnida: Opiliones: Gonyleptidae).
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Development and evaluation of a custom bait design based on 469 single-copy protein-coding genes for exon capture of isopods (Philosciidae: Haloniscus).
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    Direct sequencing of measles virus complete genomes in the midst of a large-scale outbreak.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    Past, present and future distributions of Oriental beech (Fagus orientalis) under climate change projections.
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    Integration of small RNA, degradome and proteome sequencing in Oryza sativa reveals a delayed senescence network in tetraploid rice seed.
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    PubMed     Abstract available


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    Identification of a 6-gene signature for the survival prediction of breast cancer patients based on integrated multi-omics data analysis.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Molecular epidemiology and surveillance of circulating rotavirus among children with gastroenteritis in Bangladesh during 2014-2019.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Complete chloroplast genomes of three important species, Abelmoschus moschatus, A. manihot and A. sagittifolius: Genome structures, mutational hotspots, comparative and phylogenetic analysis in Malvaceae.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Molecular assessment and transcriptome profiling of wild fish populations of Oryzias mekongensis and O. songkhramensis (Adrianichthyidae: Beloniformes) from Thailand.
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    PubMed     Abstract available


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    When European meets African honeybees (Apis mellifera L.) in the tropics: Morphological changes related to genetics in Mauritius Island (South-West Indian Ocean).
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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    Genome-wide identification of major genes and genomic prediction using high-density and text-mined gene-based SNP panels in Hanwoo (Korean cattle).
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    Dissecting seed pigmentation-associated genomic loci and genes by employing dual approaches of reference-based and k-mer-based GWAS with 438 Glycine accessions.
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    PubMed     Abstract available


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    The impact of different negative training data on regulatory sequence predictions.
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    PubMed     Abstract available


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    Genomic surveillance of Neisseria meningitidis serogroup B invasive strains: Diversity of vaccine antigen types, Brazil, 2016-2018.
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    In-depth characterization and comparison of the N-glycosylated proteome of two-dimensional- and three-dimensional-cultured breast cancer cells and xenografted tumors.
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    Periplasm-enriched fractions from Xanthomonas citri subsp. citri type A and X. fuscans subsp. aurantifolii type B present distinct proteomic profiles under in vitro pathogenicity induction.
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    Genetic structure of coast redwood (Sequoia sempervirens [D. Don] Endl.) populations in and outside of the natural distribution range based on nuclear and chloroplast microsatellite markers.
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    PubMed     Abstract available


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    Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae).
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    On genetic diversity in caraway: Genotyping of a large germplasm collection.
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