: The AMEDEO Literature Guide

Home The Word Brain

My Amedeo

FAQ

Privacy

About

Flying Publisher

OLIENA
Language recovery after stroke
App | Video | PDF (278 pp) | Web

Genetics

Free Subscription

Articles published in PLoS One
Retrieve available abstracts of 1493 articles:
HTML format
Text format

Single Articles

January 2018

WANG MN, Duan L, Qiao Q, Wang ZF, et al
Phylogeography and conservation genetics of the rare and relict Bretschneidera sinensis (Akaniaceae).
PLoS One. 2018;13:e0189034.
PubMed Text format Abstract available

CHIVA C, Olivella R, Borras E, Espadas G, et al
QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories.
PLoS One. 2018;13:e0189209.
PubMed Text format Abstract available

SCHNITZLER A, Granado J, Putelat O, Arbogast RM, et al
Genetic diversity, genetic structure and diet of ancient and contemporary red deer (Cervus elaphus L.) from north-eastern France.
PLoS One. 2018;13:e0189278.
PubMed Text format Abstract available

KREHENWINKEL H, Fong M, Kennedy S, Huang EG, et al
The effect of DNA degradation bias in passive sampling devices on metabarcoding studies of arthropod communities and their associated microbiota.
PLoS One. 2018;13:e0189188.
PubMed Text format Abstract available

ZABOIKIN M, Freter C, Srinivasakumar N
Gaussian decomposition of high-resolution melt curve derivatives for measuring genome-editing efficiency.
PLoS One. 2018;13:e0190192.
PubMed Text format Abstract available

BZHALAVA Z, Hultin E, Dillner J
Extension of the viral ecology in humans using viral profile hidden Markov models.
PLoS One. 2018;13:e0190938.
PubMed Text format Abstract available

ANDLEY UP, Tycksen E, McGlasson-Naumann BN, Hamilton PD, et al
Probing the changes in gene expression due to alpha-crystallin mutations in mouse models of hereditary human cataract.
PLoS One. 2018;13:e0190817.
PubMed Text format Abstract available

POLJAK S, Ferreiro AM, Chiappero MB, Sanchez J, et al
Phylogeography of screaming hairy armadillo Chaetophractus vellerosus: Successive disjunctions and extinctions due to cyclical climatic changes in southern South America.
PLoS One. 2018;13:e0190944.
PubMed Text format Abstract available

FISCH-MULLER S, Mol JHA, Covain R
An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complex.
PLoS One. 2018;13:e0189789.
PubMed Text format Abstract available

ABOU-ANTOUN TJ, Nazarian J, Ghanem A, Vukmanovic S, et al
Molecular and functional analysis of anchorage independent, treatment-evasive neuroblastoma tumorspheres with enhanced malignant properties: A possible explanation for radio-therapy resistance.
PLoS One. 2018;13:e0189711.
PubMed Text format Abstract available

CLARK CG, Chen CY, Berry C, Walker M, et al
Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds.
PLoS One. 2018;13:e0190836.
PubMed Text format Abstract available

GUO WL, Chen BH, Chen XJ, Guo YY, et al
Transcriptome profiling of pumpkin (Cucurbita moschata Duch.) leaves infected with powdery mildew.
PLoS One. 2018;13:e0190175.
PubMed Text format Abstract available

CHOUDHARY N, Singh V
A census of P. longum's phytochemicals and their network pharmacological evaluation for identifying novel drug-like molecules against various diseases, with a special focus on neurological disorders.
PLoS One. 2018;13:e0191006.
PubMed Text format Abstract available

BALIC I, Vizoso P, Nilo-Poyanco R, Sanhueza D, et al
Transcriptome analysis during ripening of table grape berry cv. Thompson Seedless.
PLoS One. 2018;13:e0190087.
PubMed Text format Abstract available

VILLEGAS LEM, Campolina TB, Barnabe NR, Orfano AS, et al
Zika virus infection modulates the bacterial diversity associated with Aedes aegypti as revealed by metagenomic analysis.
PLoS One. 2018;13:e0190352.
PubMed Text format Abstract available

CHOI JE, Nguyen CM, Lee B, Park JH, et al
Isolation and characterization of a novel metagenomic enzyme capable of degrading bacterial phytotoxin toxoflavin.
PLoS One. 2018;13:e0183893.
PubMed Text format Abstract available

DOGAN MV, Grumbach IM, Michaelson JJ, Philibert RA, et al
Integrated genetic and epigenetic prediction of coronary heart disease in the Framingham Heart Study.
PLoS One. 2018;13:e0190549.
PubMed Text format Abstract available

PETKEVICIUTE R, Stunzenas V, Staneviciute G
Comments on species divergence in the genus Sphaerium (Bivalvia) and phylogenetic affinities of Sphaerium nucleus and S. corneum var. mamillanum based on karyotypes and sequences of 16S and ITS1 rDNA.
PLoS One. 2018;13:e0191427.
PubMed Text format Abstract available

LIU J, Liu J, Wang G, Liu G, et al
Electroacupuncture at Guanyuan (CV 4), Zusanli (ST 36) and Baihui (DU 20) regulate the aging-related changes in gene expression profile of the hippocampus in sub-acutely aging rats.
PLoS One. 2018;13:e0191623.
PubMed Text format Abstract available

TALUKDER SK, Azhaguvel P, Chekhovskiy K, Saha MC, et al
Molecular discrimination of tall fescue morphotypes in association with Festuca relatives.
PLoS One. 2018;13:e0191343.
PubMed Text format Abstract available

TORRES SMF, Furrow E, Souza CP, Granick JL, et al
Salivary proteomics of healthy dogs: An in depth catalog.
PLoS One. 2018;13:e0191307.
PubMed Text format Abstract available

ZHAN Y, Marchand CH, Maes A, Mauries A, et al
Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii.
PLoS One. 2018;13:e0185039.
PubMed Text format Abstract available

FUJITA T, Kozuka-Hata H, Hori Y, Takeuchi J, et al
Shotgun proteomics deciphered age/division of labor-related functional specification of three honeybee (Apis mellifera L.) exocrine glands.
PLoS One. 2018;13:e0191344.
PubMed Text format Abstract available

REYES-VELASCO J, Manthey JD, Bourgeois Y, Freilich X, et al
Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data.
PLoS One. 2018;13:e0190440.
PubMed Text format Abstract available

MAYFIELD AB, Chen YJ, Lu CY, Chen CS, et al
The proteomic response of the reef coral Pocillopora acuta to experimentally elevated temperatures.
PLoS One. 2018;13:e0192001.
PubMed Text format Abstract available

HIBINO A, Saito R, Taniguchi K, Zaraket H, et al
Molecular epidemiology of human respiratory syncytial virus among children in Japan during three seasons and hospitalization risk of genotype ON1.
PLoS One. 2018;13:e0192085.
PubMed Text format Abstract available

GHANDHI SA, Turner HC, Shuryak I, Dugan GO, et al
Whole thorax irradiation of non-human primates induces persistent nuclear damage and gene expression changes in peripheral blood cells.
PLoS One. 2018;13:e0191402.
PubMed Text format Abstract available

ZHAN XY, Zhu QY
Molecular typing of Legionella pneumophila isolates from environmental water samples and clinical samples using a five-gene sequence typing and standard Sequence-Based Typing.
PLoS One. 2018;13:e0190986.
PubMed Text format Abstract available

AIBEKOVA L, Foley B, Hortelano G, Raees M, et al
Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries.
PLoS One. 2018;13:e0191891.
PubMed Text format Abstract available

NOLL LW, Worley JN, Yang X, Shridhar PB, et al
Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin.
PLoS One. 2018;13:e0191362.
PubMed Text format Abstract available

LEVANEN R, Thulin CG, Spong G, Pohjoismaki JLO, et al
Widespread introgression of mountain hare genes into Fennoscandian brown hare populations.
PLoS One. 2018;13:e0191790.
PubMed Text format Abstract available

ALKHAMIS MA, Gallardo C, Jurado C, Soler A, et al
Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa.
PLoS One. 2018;13:e0192565.
PubMed Text format Abstract available

VONDRACEK D, Fuchsova A, Ahrens D, Kral D, et al
Phylogeography and DNA-based species delimitation provide insight into the taxonomy of the polymorphic rose chafer Protaetia (Potosia) cuprea species complex (Coleoptera: Scarabaeidae: Cetoniinae) in the Western Palearctic.
PLoS One. 2018;13:e0192349.
PubMed Text format Abstract available

WALLACE JC, Youngblood JE, Port JA, Cullen AC, et al
Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts.
PLoS One. 2018;13:e0192412.
PubMed Text format Abstract available

TADESSE G, Tessema TS, Beyene G, Aseffa A, et al
Molecular epidemiology of fluoroquinolone resistant Salmonella in Africa: A systematic review and meta-analysis.
PLoS One. 2018;13:e0192575.
PubMed Text format Abstract available

DWIVEDI B, Kowalski J
shinyGISPA: A web application for characterizing phenotype by gene sets using multiple omics data combinations.
PLoS One. 2018;13:e0192563.
PubMed Text format Abstract available

DE LA FUENTE C, Pinkham C, Dabbagh D, Beitzel B, et al
Phosphoproteomic analysis reveals Smad protein family activation following Rift Valley fever virus infection.
PLoS One. 2018;13:e0191983.
PubMed Text format Abstract available

YANG H, Cai Y, Zhuo Z, Yang W, et al
Transcriptome analysis in different developmental stages of Batocera horsfieldi (Coleoptera: Cerambycidae) and comparison of candidate olfactory genes.
PLoS One. 2018;13:e0192730.
PubMed Text format Abstract available

GAUTAM SS, Mac Aogain M, Cooley LA, Haug G, et al
Molecular epidemiology of tuberculosis in Tasmania and genomic characterisation of its first known multi-drug resistant case.
PLoS One. 2018;13:e0192351.
PubMed Text format Abstract available

KANITZ R, Guillot EG, Antoniazza S, Neuenschwander S, et al
Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses.
PLoS One. 2018;13:e0192460.
PubMed Text format Abstract available

VALLES SM, Porter SD, Calcaterra LA
Prospecting for viral natural enemies of the fire ant Solenopsis invicta in Argentina.
PLoS One. 2018;13:e0192377.
PubMed Text format Abstract available

DRAG M, Hansen MB, Kadarmideen HN
Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.
PLoS One. 2018;13:e0192673.
PubMed Text format Abstract available

KUZUYA K, Ichihara S, Suzuki Y, Inoue C, et al
Proteomics analysis identified peroxiredoxin 2 involved in early-phase left ventricular impairment in hamsters with cardiomyopathy.
PLoS One. 2018;13:e0192624.
PubMed Text format Abstract available

POURNOSRAT R, Kaya S, Shaaf S, Kilian B, et al
Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia.
PLoS One. 2018;13:e0192386.
PubMed Text format Abstract available

KHAN R, Roy N, Choi K, Lee SW, et al
Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis.
PLoS One. 2018;13:e0192277.
PubMed Text format Abstract available

DONOVAN PD, Gonzalez G, Higgins DG, Butler G, et al
Identification of fungi in shotgun metagenomics datasets.
PLoS One. 2018;13:e0192898.
PubMed Text format Abstract available

DOUILLARD FP, Mora D, Eijlander RT, Wels M, et al
Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.
PLoS One. 2018;13:e0192452.
PubMed Text format Abstract available

KAMAL AHM, Fessler MB, Chowdhury SM
Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages.
PLoS One. 2018;13:e0193104.
PubMed Text format Abstract available

VELEZ G, Machlab DA, Tang PH, Sun Y, et al
Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases.
PLoS One. 2018;13:e0193250.
PubMed Text format Abstract available

COSTA WJEM, Amorim PF, Mattos JLO
Synchronic historical patterns of species diversification in seasonal aplocheiloid killifishes of the semi-arid Brazilian Caatinga.
PLoS One. 2018;13:e0193021.
PubMed Text format Abstract available

TILAHUN M, Ameni G, Desta K, Zewude A, et al
Molecular epidemiology and drug sensitivity pattern of Mycobacterium tuberculosis strains isolated from pulmonary tuberculosis patients in and around Ambo Town, Central Ethiopia.
PLoS One. 2018;13:e0193083.
PubMed Text format Abstract available

HOU L, Ji Z, Wang G, Wang J, et al
Identification and characterization of microRNAs in the intestinal tissues of sheep (Ovis aries).
PLoS One. 2018;13:e0193371.
PubMed Text format Abstract available

DIETRICH MA, Ciereszko A
Proteomic characterization of fresh spermatozoa and supernatant after cryopreservation in relation to freezability of carp (Cyprinus carpio L) semen.
PLoS One. 2018;13:e0192972.
PubMed Text format Abstract available

KORSHUNOVA T, Lundin K, Malmberg K, Picton B, et al
First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution.
PLoS One. 2018;13:e0192177.
PubMed Text format Abstract available

PRIETO-TORRES DA, Cuervo AM, Bonaccorso E
On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes.
PLoS One. 2018;13:e0191598.
PubMed Text format Abstract available

BHOGOJU S, Nahashon S, Wang X, Darris C, et al
A comparative analysis of microbial profile of Guinea fowl and chicken using metagenomic approach.
PLoS One. 2018;13:e0191029.
PubMed Text format Abstract available

TEIXEIRA MA, Sela N, Atamian HS, Bao E, et al
Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.
PLoS One. 2018;13:e0193239.
PubMed Text format Abstract available

XI T, Zhang G
Integrated analysis of tumor differentiation genes in pancreatic adenocarcinoma.
PLoS One. 2018;13:e0193427.
PubMed Text format Abstract available

WOLDESEMAYAT AA, Modise DM, Gemeildien J, Ndimba BK, et al
Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species.
PLoS One. 2018;13:e0192678.
PubMed Text format Abstract available

PAGNUCO IA, Revuelta MV, Bondino HG, Brun M, et al
HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold.
PLoS One. 2018;13:e0193757.
PubMed Text format Abstract available

ABEYRATNE SAE, Amarasekera SSC, Ranaweera LT, Salpadoru TB, et al
The phylogenetic analysis of VP1 genomic region in foot-and-mouth disease virus serotype O isolates in Sri Lanka reveals the existence of 'Srl-97', a newly named endemic lineage.
PLoS One. 2018;13:e0194077.
PubMed Text format Abstract available

CHAVARIE L, Howland KL, Harris LN, Hansen MJ, et al
From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?
PLoS One. 2018;13:e0193925.
PubMed Text format Abstract available

JOHNSON M, Alsaleh N, Mendoza RP, Persaud I, et al
Genomic and transcriptomic comparison of allergen and silver nanoparticle-induced mast cell degranulation reveals novel non-immunoglobulin E mediated mechanisms.
PLoS One. 2018;13:e0193499.
PubMed Text format Abstract available

DAANE KM, Middleton MC, Sforza RFH, Kamps-Hughes N, et al
Determining the geographic origin of invasive populations of the mealybug Planococcus ficus based on molecular genetic analysis.
PLoS One. 2018;13:e0193852.
PubMed Text format Abstract available

BARTOSOVA-SOJKOVA P, Lovy A, Reed CC, Lisnerova M, et al
Life in a rock pool: Radiation and population genetics of myxozoan parasites in hosts inhabiting restricted spaces.
PLoS One. 2018;13:e0194042.
PubMed Text format Abstract available

KIM K, Jung J, Caetano-Anolles K, Sung S, et al
Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle.
PLoS One. 2018;13:e0193701.
PubMed Text format Abstract available

ZHANG Z, Du H, Bai L, Yang C, et al
Whole genome bisulfite sequencing reveals unique adaptations to high-altitude environments in Tibetan chickens.
PLoS One. 2018;13:e0193597.
PubMed Text format Abstract available

THAPA K, Manandhar S, Bista M, Shakya J, et al
Assessment of genetic diversity, population structure, and gene flow of tigers (Panthera tigris tigris) across Nepal's Terai Arc Landscape.
PLoS One. 2018;13:e0193495.
PubMed Text format Abstract available

DE OLIVEIRA UC, Nishiyama MY Jr, Dos Santos MBV, Santos-da-Silva AP, et al
Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions.
PLoS One. 2018;13:e0193739.
PubMed Text format Abstract available

ZHANG X, Chen D, Xu G, Huang W, et al
Molecular epidemiology and drug resistant mechanism in carbapenem-resistant Klebsiella pneumoniae isolated from pediatric patients in Shanghai, China.
PLoS One. 2018;13:e0194000.
PubMed Text format Abstract available

HARVEY AJ, O'Brien C, Lambshead J, Sheedy JR, et al
Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.
PLoS One. 2018;13:e0193949.
PubMed Text format Abstract available

BEKKER EI, Karabanov DP, Galimov YR, Haag CR, et al
Phylogeography of Daphnia magna Straus (Crustacea: Cladocera) in Northern Eurasia: Evidence for a deep longitudinal split between mitochondrial lineages.
PLoS One. 2018;13:e0194045.
PubMed Text format Abstract available

ZENG L, Kortschak RD, Raison JM, Bertozzi T, et al
Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies.
PLoS One. 2018;13:e0193588.
PubMed Text format Abstract available

RUSU I, Modi A, Vai S, Pilli E, et al
Maternal DNA lineages at the gate of Europe in the 10th century AD.
PLoS One. 2018;13:e0193578.
PubMed Text format Abstract available

AGARAS BC, Iriarte A, Valverde CF
Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.
PLoS One. 2018;13:e0194088.
PubMed Text format Abstract available

XING M, Sun C, Li H, Hu S, et al
Integrated analysis of transcriptome and proteome changes related to the Ogura cytoplasmic male sterility in cabbage.
PLoS One. 2018;13:e0193462.
PubMed Text format Abstract available

BUHNER S, Hahne H, Hartwig K, Li Q, et al
Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients.
PLoS One. 2018;13:e0193943.
PubMed Text format Abstract available

SKEIE JM, Aldrich BT, Goldstein AS, Schmidt GA, et al
Proteomic analysis of corneal endothelial cell-descemet membrane tissues reveals influence of insulin dependence and disease severity in type 2 diabetes mellitus.
PLoS One. 2018;13:e0192287.
PubMed Text format Abstract available

BERG AT, Chakravorty S, Koh S, Grinspan ZM, et al
Why West? Comparisons of clinical, genetic and molecular features of infants with and without spasms.
PLoS One. 2018;13:e0193599.
PubMed Text format Abstract available

MIYAUCHI E, Furuta T, Ohtsuki S, Tachikawa M, et al
Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics.
PLoS One. 2018;13:e0193799.
PubMed Text format Abstract available

HUANG J, Wei H, Li L, Yu S, et al
Transcriptome analysis of nitric oxide-responsive genes in upland cotton (Gossypium hirsutum).
PLoS One. 2018;13:e0192367.
PubMed Text format Abstract available

GOMES VIANA JP, Bohrer Monteiro Siqueira MV, Araujo FL, Grando C, et al
Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
PLoS One. 2018;13:e0192165.
PubMed Text format Abstract available

AUMAILLEY L, Roux-Dalvai F, Kelly I, Droit A, et al
Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein.
PLoS One. 2018;13:e0193170.
PubMed Text format Abstract available

CRONA K
Recombination and peak jumping.
PLoS One. 2018;13:e0193123.
PubMed Text format Abstract available

NEWBERG LA, Chen X, Kodira CD, Zavodszky MI, et al
Computational de novo discovery of distinguishing genes for biological processes and cell types in complex tissues.
PLoS One. 2018;13:e0193067.
PubMed Text format Abstract available

HICKS J, Stuber T, Lantz K, Erdman M, et al
Genomic diversity of Taylorella equigenitalis introduced into the United States from 1978 to 2012.
PLoS One. 2018;13:e0194253.
PubMed Text format Abstract available

MA J, Saghatelian A, Shokhirev MN
The influence of transcript assembly on the proteogenomics discovery of microproteins.
PLoS One. 2018;13:e0194518.
PubMed Text format Abstract available

GELDENHUYS M, Mortlock M, Weyer J, Bezuidt O, et al
A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa.
PLoS One. 2018;13:e0194527.
PubMed Text format Abstract available

LIU C, Ran X, Wang J, Li S, et al
Detection of genomic structural variations in Guizhou indigenous pigs and the comparison with other breeds.
PLoS One. 2018;13:e0194282.
PubMed Text format Abstract available

DONG Y, Sun Y, Qin C
Predicting protein complexes using a supervised learning method combined with local structural information.
PLoS One. 2018;13:e0194124.
PubMed Text format Abstract available

SANCHEZ C, Mazzucchelli G, Lambert C, Comblain F, et al
Comparison of secretome from osteoblasts derived from sclerotic versus non-sclerotic subchondral bone in OA: A pilot study.
PLoS One. 2018;13:e0194591.
PubMed Text format Abstract available

OXUSOFF L, Prea P, Perez Y
A complete logical approach to resolve the evolution and dynamics of mitochondrial genome in bilaterians.
PLoS One. 2018;13:e0194334.
PubMed Text format Abstract available

VISSER JH, Bennett NC, Jansen van Vuuren B
Spatial genetic diversity in the Cape mole-rat, Georychus capensis: Extreme isolation of populations in a subterranean environment.
PLoS One. 2018;13:e0194165.
PubMed Text format Abstract available

CHEN C, Long L, Zhang F, Chen Q, et al
Antifungal activity, main active components and mechanism of Curcuma longa extract against Fusarium graminearum.
PLoS One. 2018;13:e0194284.
PubMed Text format Abstract available

BLANCO-GUILLOT F, Castaneda-Cediel ML, Cruz-Hervert P, Ferreyra-Reyes L, et al
Genotyping and spatial analysis of pulmonary tuberculosis and diabetes cases in the state of Veracruz, Mexico.
PLoS One. 2018;13:e0193911.
PubMed Text format Abstract available

PAROLO S, Marchetti L, Lauria M, Misselbeck K, et al
Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy.
PLoS One. 2018;13:e0194225.
PubMed Text format Abstract available

HAJJEJ A, Almawi WY, Arnaiz-Villena A, Hattab L, et al
The genetic heterogeneity of Arab populations as inferred from HLA genes.
PLoS One. 2018;13:e0192269.
PubMed Text format Abstract available

WILSON AM, van der Nest MA, Wilken PM, Wingfield MJ, et al
Pheromone expression reveals putative mechanism of unisexuality in a saprobic ascomycete fungus.
PLoS One. 2018;13:e0192517.
PubMed Text format Abstract available

SUN X, Stewart DA, Sandhu R, Kirk EL, et al
Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue.
PLoS One. 2018;13:e0193792.
PubMed Text format Abstract available

WEBER KS, Bridgewater LC, Jensen JL, Breakwell DP, et al
Personal microbiome analysis improves student engagement and interest in Immunology, Molecular Biology, and Genomics undergraduate courses.
PLoS One. 2018;13:e0193696.
PubMed Text format Abstract available

PEOPLES LM, Donaldson S, Osuntokun O, Xia Q, et al
Vertically distinct microbial communities in the Mariana and Kermadec trenches.
PLoS One. 2018;13:e0195102.
PubMed Text format Abstract available

SEMERARO R, Orlandini V, Magi A
Xome-Blender: A novel cancer genome simulator.
PLoS One. 2018;13:e0194472.
PubMed Text format Abstract available

STOJANOVA B, Surinova M, Klapste J, Kolarikova V, et al
Adaptive differentiation of Festuca rubra along a climate gradient revealed by molecular markers and quantitative traits.
PLoS One. 2018;13:e0194670.
PubMed Text format Abstract available

CIRILLO E, Kutmon M, Gonzalez Hernandez M, Hooimeijer T, et al
From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results.
PLoS One. 2018;13:e0193515.
PubMed Text format Abstract available

BAMBHROLIYA A, Van Wyhe RD, Kumar S, Debeb BG, et al
Gene set analysis of post-lactational mammary gland involution gene signatures in inflammatory and triple-negative breast cancer.
PLoS One. 2018;13:e0192689.
PubMed Text format Abstract available

HENNEMAN P, Bouman A, Mul A, Knegt L, et al
Widespread domain-like perturbations of DNA methylation in whole blood of Down syndrome neonates.
PLoS One. 2018;13:e0194938.
PubMed Text format Abstract available

JOENVAARA S, Saraswat M, Kuusela P, Saraswat S, et al
Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients.
PLoS One. 2018;13:e0195006.
PubMed Text format Abstract available

CARTMELL KB, Sterba KR, Pickett K, Zapka J, et al
Availability of patient-centered cancer support services: A statewide survey of cancer centers.
PLoS One. 2018;13:e0194649.
PubMed Text format Abstract available

KELLY AC, Ward TJ
Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen.
PLoS One. 2018;13:e0194616.
PubMed Text format Abstract available

DI FEDE M, Biagini M, Cartocci E, Parillo C, et al
Neisseria Heparin Binding Antigen is targeted by the human alternative pathway C3-convertase.
PLoS One. 2018;13:e0194662.
PubMed Text format Abstract available

DEPERI SI, Tagliotti ME, Bedogni MC, Manrique-Carpintero NC, et al
Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs.
PLoS One. 2018;13:e0194398.
PubMed Text format Abstract available

FILIPOVA D, Henry M, Rotshteyn T, Brunn A, et al
Distinct transcriptomic changes in E14.5 mouse skeletal muscle lacking RYR1 or Cav1.1 converge at E18.5.
PLoS One. 2018;13:e0194428.
PubMed Text format Abstract available

DA SILVA M, Noll FB, E Castro ACM
Phylogeographic analysis reveals high genetic structure with uniform phenotypes in the paper wasp Protonectarina sylveirae (Hymenoptera: Vespidae).
PLoS One. 2018;13:e0194424.
PubMed Text format Abstract available

GARRIS HW, Baldwin SA, Taylor J, Gurr DB, et al
Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment.
PLoS One. 2018;13:e0196032.
PubMed Text format Abstract available

ROSLI R, Amiruddin N, Ab Halim MA, Chan PL, et al
Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.
PLoS One. 2018;13:e0194792.
PubMed Text format Abstract available

YANG S, Wang Y, Wang L, Shi Z, et al
RNA-Seq reveals differentially expressed genes affecting polyunsaturated fatty acids percentage in the Huangshan Black chicken population.
PLoS One. 2018;13:e0195132.
PubMed Text format Abstract available

SCHUSTER TM, Setaro SD, Tibbits JFG, Batty EL, et al
Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae).
PLoS One. 2018;13:e0195034.
PubMed Text format Abstract available

CHAI JH, Lee CK, Lee HK, Wong N, et al
Cost-benefit analysis of introducing next-generation sequencing (metagenomic) pathogen testing in the setting of pyrexia of unknown origin.
PLoS One. 2018;13:e0194648.
PubMed Text format Abstract available

JMEL H, Romdhane L, Ben Halima Y, Hechmi M, et al
Pharmacogenetic landscape of Metabolic Syndrome components drug response in Tunisia and comparison with worldwide populations.
PLoS One. 2018;13:e0194842.
PubMed Text format Abstract available

SELA I, Wolf YI, Koonin EV
Estimation of universal and taxon-specific parameters of prokaryotic genome evolution.
PLoS One. 2018;13:e0195571.
PubMed Text format Abstract available

HU Y, Hao X, Chen L, Akhberdi O, et al
Galpha-cAMP/PKA pathway positively regulates pigmentation, chaetoglobosin A biosynthesis and sexual development in Chaetomium globosum.
PLoS One. 2018;13:e0195553.
PubMed Text format Abstract available

KEREN-AVIRAM G, Dachet F, Bagla S, Balan K, et al
Proteomic analysis of human epileptic neocortex predicts vascular and glial changes in epileptic regions.
PLoS One. 2018;13:e0195639.
PubMed Text format Abstract available

ZHOU N, Katz M, Knecht W, Compagno C, et al
Genome dynamics and evolution in yeasts: A long-term yeast-bacteria competition experiment.
PLoS One. 2018;13:e0194911.
PubMed Text format Abstract available

FERREIRA DA SILVA MJ, Kopp GH, Casanova C, Godinho R, et al
Disrupted dispersal and its genetic consequences: Comparing protected and threatened baboon populations (Papio papio) in West Africa.
PLoS One. 2018;13:e0194189.
PubMed Text format Abstract available

MAHMOUD M, Zeng Y, Shirali M, Yin T, et al
Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens.
PLoS One. 2018;13:e0194374.
PubMed Text format Abstract available

GOLIZEH M, Melendez-Pena CE, Ward BJ, Saeed S, et al
Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging.
PLoS One. 2018;13:e0195148.
PubMed Text format Abstract available

UMAIR M, Abbasi BH, Sharif S, Alam MM, et al
High prevalence of G3 rotavirus in hospitalized children in Rawalpindi, Pakistan during 2014.
PLoS One. 2018;13:e0195947.
PubMed Text format Abstract available

LI S, Dou X, Gao R, Ge X, et al
A remark on copy number variation detection methods.
PLoS One. 2018;13:e0196226.
PubMed Text format Abstract available

SILVA AC, Souza AF
Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America.
PLoS One. 2018;13:e0196130.
PubMed Text format Abstract available

MA Y, Gu L, Yang L, Sun C, et al
Identifying artificial selection signals in the chicken genome.
PLoS One. 2018;13:e0196215.
PubMed Text format Abstract available

MENDES CB, Norenburg JL, Solferini VN, Andrade SCS, et al
Hidden diversity: Phylogeography of genus Ototyphlonemertes Diesing, 1863 (Ototyphlonemertidae: Hoplonemertea) reveals cryptic species and high diversity in Chilean populations.
PLoS One. 2018;13:e0195833.
PubMed Text format Abstract available

RODGER YS, Greenbaum G, Silver M, Bar-David S, et al
Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species' global distribution: Combining classical population genetics and network analyses.
PLoS One. 2018;13:e0194901.
PubMed Text format Abstract available

GHORBANI A, Izadpanah K, Dietzgen RG
Changes in maize transcriptome in response to maize Iranian mosaic virus infection.
PLoS One. 2018;13:e0194592.
PubMed Text format Abstract available

URRESTARAZU J, Errea P, Miranda C, Santesteban LG, et al
Genetic diversity of Spanish Prunus domestica L. germplasm reveals a complex genetic structure underlying.
PLoS One. 2018;13:e0195591.
PubMed Text format Abstract available

KHAN G, Ribeiro PM, Bonatelli IAS, Perez MF, et al
Weak population structure and no genetic erosion in Pilosocereus aureispinus: A microendemic and threatened cactus species from eastern Brazil.
PLoS One. 2018;13:e0195475.
PubMed Text format Abstract available

HOLM M, Saraswat M, Joenvaara S, Ristimaki A, et al
Colorectal cancer patients with different C-reactive protein levels and 5-year survival times can be differentiated with quantitative serum proteomics.
PLoS One. 2018;13:e0195354.
PubMed Text format Abstract available

SKOWRON PM, Kropinski AM, Zebrowska J, Janus L, et al
Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.
PLoS One. 2018;13:e0195449.
PubMed Text format Abstract available

TANDON D, Haque MM, R S, Shaikh S, et al
A snapshot of gut microbiota of an adult urban population from Western region of India.
PLoS One. 2018;13:e0195643.
PubMed Text format Abstract available

ZENG J, Garrick D, Dekkers J, Fernando R, et al
A nested mixture model for genomic prediction using whole-genome SNP genotypes.
PLoS One. 2018;13:e0194683.
PubMed Text format Abstract available

GLASSET B, Herbin S, Granier SA, Cavalie L, et al
Bacillus cereus, a serious cause of nosocomial infections: Epidemiologic and genetic survey.
PLoS One. 2018;13:e0194346.
PubMed Text format Abstract available

TSURU M, Ono A, Umeyama H, Takeuchi M, et al
Ubiquitin-dependent proteolysis of CXCL7 leads to posterior longitudinal ligament ossification.
PLoS One. 2018;13:e0196204.
PubMed Text format Abstract available

RAHMAN F, Hassan M, Rosli R, Almousally I, et al
Evolutionary and genomic analysis of the caleosin/peroxygenase (CLO/PXG) gene/protein families in the Viridiplantae.
PLoS One. 2018;13:e0196669.
PubMed Text format Abstract available

RYSKALIYEVA A, Henry C, Miranda G, Faye B, et al
Combining different proteomic approaches to resolve complexity of the milk protein fraction of dromedary, Bactrian camels and hybrids, from different regions of Kazakhstan.
PLoS One. 2018;13:e0197026.
PubMed Text format Abstract available

NEUBAUER PR, Widmann C, Wibberg D, Schroder L, et al
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
PLoS One. 2018;13:e0196797.
PubMed Text format Abstract available

FISCHER L, Rappsilber J
False discovery rate estimation and heterobifunctional cross-linkers.
PLoS One. 2018;13:e0196672.
PubMed Text format Abstract available

MIAO YT, Deng Y, Jia HK, Liu YD, et al
Proteomic analysis of watery saliva secreted by white-backed planthopper, Sogatella furcifera.
PLoS One. 2018;13:e0193831.
PubMed Text format Abstract available

BENOIT JB, Frank DN, Bessesen MT
Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.
PLoS One. 2018;13:e0195860.
PubMed Text format Abstract available

HEBERLING JM, Mason NWH
Are endemics functionally distinct? Leaf traits of native and exotic woody species in a New Zealand forest.
PLoS One. 2018;13:e0196746.
PubMed Text format Abstract available

KLANGNURAK W, Fukuyo T, Rezanujjaman MD, Seki M, et al
Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish.
PLoS One. 2018;13:e0196544.
PubMed Text format Abstract available

KOSTRIKIS LG, Hezka J, Stylianou DC, Kostaki E, et al
HIV-1 transmission networks across Cyprus (2010-2012).
PLoS One. 2018;13:e0195660.
PubMed Text format Abstract available

PUENTE C, Abian-Vicen J, Del Coso J, Lara B, et al
The CYP1A2 -163C>A polymorphism does not alter the effects of caffeine on basketball performance.
PLoS One. 2018;13:e0195943.
PubMed Text format Abstract available

RAINE A, Liljedahl U, Nordlund J
Data quality of whole genome bisulfite sequencing on Illumina platforms.
PLoS One. 2018;13:e0195972.
PubMed Text format Abstract available

MARTINS MP, Gomes EV, Sanches PR, Pedersoli WR, et al
mus-52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability.
PLoS One. 2018;13:e0195871.
PubMed Text format Abstract available

BETIKU OC, Yeoman CJ, Gaylord TG, Americus B, et al
Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout.
PLoS One. 2018;13:e0195967.
PubMed Text format Abstract available

MOHAMED RAMLI N, Giatsis C, Md Yusoff F, Verreth J, et al
Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation.
PLoS One. 2018;13:e0195862.
PubMed Text format Abstract available

RIVERA SF, Vasselon V, Ballorain K, Carpentier A, et al
DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior.
PLoS One. 2018;13:e0195770.
PubMed Text format Abstract available

GOG JR, Lever AML, Skittrall JP
A new method for detecting signal regions in ordered sequences of real numbers, and application to viral genomic data.
PLoS One. 2018;13:e0195763.
PubMed Text format Abstract available

DOLMATOV IY, Afanasyev SV, Boyko AV
Molecular mechanisms of fission in echinoderms: Transcriptome analysis.
PLoS One. 2018;13:e0195836.
PubMed Text format Abstract available

PAQUETTE SJ, Stanford K, Thomas J, Reuter T, et al
Quantitative surveillance of shiga toxins 1 and 2, Escherichia coli O178 and O157 in feces of western-Canadian slaughter cattle enumerated by droplet digital PCR with a focus on seasonality and slaughterhouse location.
PLoS One. 2018;13:e0195880.
PubMed Text format Abstract available

TRAMUTO F, Maida CM, Pojero F, Colomba GME, et al
Case-based surveillance of measles in Sicily during 2012-2017: The changing molecular epidemiology and implications for vaccine strategies.
PLoS One. 2018;13:e0195256.
PubMed Text format Abstract available

SPITSYN VM, Kondakov AV, Bolotov NI, Thi Pham N, et al
DNA barcoding unravels contrasting evolutionary history of two widespread Asian tiger moth species during the Late Pleistocene.
PLoS One. 2018;13:e0194200.
PubMed Text format Abstract available

BRINKMAN NE, Villegas EN, Garland JL, Keely SP, et al
Reducing inherent biases introduced during DNA viral metagenome analyses of municipal wastewater.
PLoS One. 2018;13:e0195350.
PubMed Text format Abstract available

MENOTTA M, Orazi S, Gioacchini AM, Spapperi C, et al
Proteomics and transcriptomics analyses of ataxia telangiectasia cells treated with Dexamethasone.
PLoS One. 2018;13:e0195388.
PubMed Text format Abstract available

CASTILLO H, Li X, Schilkey F, Smith GB, et al
Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation.
PLoS One. 2018;13:e0196472.
PubMed Text format Abstract available

WILLMANN C, Mata X, Hanghoej K, Tonasso L, et al
Oral health status in historic population: Macroscopic and metagenomic evidence.
PLoS One. 2018;13:e0196482.
PubMed Text format Abstract available

DEPRA GC, Graca WJD, Pavanelli CS, Avelino GS, et al
Molecular phylogeny of Planaltina Bohlke (Characidae: Stevardiinae) and comments on the definition and geographic distribution of the genus, with description of a new species.
PLoS One. 2018;13:e0196291.
PubMed Text format Abstract available

ILIE DE, Kusza S, Sauer M, Gavojdian D, et al
Genetic characterization of indigenous goat breeds in Romania and Hungary with a special focus on genetic resistance to mastitis and gastrointestinal parasitism based on 40 SNPs.
PLoS One. 2018;13:e0197051.
PubMed Text format Abstract available

MOYANO E, Martinez-Rivas FJ, Blanco-Portales R, Molina-Hidalgo FJ, et al
Genome-wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria x ananassa fruits.
PLoS One. 2018;13:e0196953.
PubMed Text format Abstract available

YU Z, Boehm CR, Hibberd JM, Abell C, et al
Droplet-based microfluidic analysis and screening of single plant cells.
PLoS One. 2018;13:e0196810.
PubMed Text format Abstract available

ZHANG T, Xu J, Deng S, Zhou F, et al
Core signaling pathways in ovarian cancer stem cell revealed by integrative analysis of multi-marker genomics data.
PLoS One. 2018;13:e0196351.
PubMed Text format Abstract available

DELEYE L, Gansemans Y, De Coninck D, Van Nieuwerburgh F, et al
Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods.
PLoS One. 2018;13:e0196334.
PubMed Text format Abstract available

SELEPE MM, Ceccobelli S, Lasagna E, Kunene NW, et al
Genetic structure of South African Nguni (Zulu) sheep populations reveals admixture with exotic breeds.
PLoS One. 2018;13:e0196276.
PubMed Text format Abstract available

DHARANIPRAGADA P, Vogeti S, Parekh N
iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
PLoS One. 2018;13:e0195334.
PubMed Text format Abstract available

January 2017

WEI HS, Li KB, Zhang S, Cao YZ, et al
Identification of candidate chemosensory genes by transcriptome analysis in Loxostege sticticalis Linnaeus.
PLoS One. 2017;12:e0174036.
PubMed Text format Abstract available

BENNETT EA, Champlot S, Peters J, Arbuckle BS, et al
Taming the late Quaternary phylogeography of the Eurasiatic wild ass through ancient and modern DNA.
PLoS One. 2017;12:e0174216.
PubMed Text format Abstract available

KANT R, Palva A, von Ossowski I
An in silico pan-genomic probe for the molecular traits behind Lactobacillus ruminis gut autochthony.
PLoS One. 2017;12:e0175541.
PubMed Text format Abstract available

MIRANDA EA, Ferreira KM, Carvalho AT, Martins CF, et al
Pleistocene climate changes shaped the population structure of Partamona seridoensis (Apidae, Meliponini), an endemic stingless bee from the Neotropical dry forest.
PLoS One. 2017;12:e0175725.
PubMed Text format Abstract available

HITZ BC, Rowe LD, Podduturi NR, Glick DI, et al
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
PLoS One. 2017;12:e0175310.
PubMed Text format Abstract available

PARDESHI P, Rao KK, Balaji PV
Rv3634c from Mycobacterium tuberculosis H37Rv encodes an enzyme with UDP-Gal/Glc and UDP-GalNAc 4-epimerase activities.
PLoS One. 2017;12:e0175193.
PubMed Text format Abstract available

CARVAJAL-RODRIGUEZ A
HacDivSel: Two new methods (haplotype-based and outlier-based) for the detection of divergent selection in pairs of populations.
PLoS One. 2017;12:e0175944.
PubMed Text format Abstract available

SPONCHIADO M, Gomes NS, Fontes PK, Martins T, et al
Pre-hatching embryo-dependent and -independent programming of endometrial function in cattle.
PLoS One. 2017;12:e0175954.
PubMed Text format Abstract available

DE CARVALHO DB, Congrains C, Chahad-Ehlers S, Pinotti H, et al
Differential transcriptome analysis supports Rhodnius montenegrensis and Rhodnius robustus (Hemiptera, Reduviidae, Triatominae) as distinct species.
PLoS One. 2017;12:e0174997.
PubMed Text format Abstract available

PASSAMANI LZ, Barbosa RR, Reis RS, Heringer AS, et al
Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots.
PLoS One. 2017;12:e0176076.
PubMed Text format Abstract available

DAGAMAC NHA, Rojas C, Novozhilov YK, Moreno GH, et al
Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes).
PLoS One. 2017;12:e0174825.
PubMed Text format Abstract available

BEN-LULU S, Ziv T, Weisman-Shomer P, Benhar M, et al
Nitrosothiol-Trapping-Based Proteomic Analysis of S-Nitrosylation in Human Lung Carcinoma Cells.
PLoS One. 2017;12:e0169862.
PubMed Text format Abstract available

FRUZANGOHAR M, Ebrahimie E, Adelson DL
A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data.
PLoS One. 2017;12:e0170486.
PubMed Text format Abstract available

NKUIPOU-KENFACK E, Schanstra JP, Bajwa S, Pejchinovski M, et al
The use of urinary proteomics in the assessment of suitability of mouse models for ageing.
PLoS One. 2017;12:e0166875.
PubMed Text format Abstract available

KIRICHENKO N, Triberti P, Ohshima I, Haran J, et al
From east to west across the Palearctic: Phylogeography of the invasive lime leaf miner Phyllonorycter issikii (Lepidoptera: Gracillariidae) and discovery of a putative new cryptic species in East Asia.
PLoS One. 2017;12:e0171104.
PubMed Text format Abstract available

PEREZ T, Fernandez M, Hammer SE, Dominguez A, et al
Multilocus Intron Trees Reveal Extensive Male-Biased Homogenization of Ancient Populations of Chamois (Rupicapra spp.) across Europe during Late Pleistocene.
PLoS One. 2017;12:e0170392.
PubMed Text format Abstract available

TRAYKOVA D, Schneider B, Chojkier M, Buck M, et al
Blood Microbiome Quantity and the Hyperdynamic Circulation in Decompensated Cirrhotic Patients.
PLoS One. 2017;12:e0169310.
PubMed Text format Abstract available

SAGULENKO E, Nouwens A, Webb RI, Green K, et al
Nuclear Pore-Like Structures in a Compartmentalized Bacterium.
PLoS One. 2017;12:e0169432.
PubMed Text format Abstract available

ANGULO DF, Amarilla LD, Anton AM, Sosa V, et al
Colonization in North American Arid Lands: The Journey of Agarito (Berberis trifoliolata) Revealed by Multilocus Molecular Data and Packrat Midden Fossil Remains.
PLoS One. 2017;12:e0168933.
PubMed Text format Abstract available

PORTE B, Chatelain C, Hardouin J, Derambure C, et al
Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice.
PLoS One. 2017;12:e0171048.
PubMed Text format Abstract available

NANDAN D, Thomas SA, Nguyen A, Moon KM, et al
Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture.
PLoS One. 2017;12:e0170068.
PubMed Text format Abstract available

MSALYA G, Kim ES, Laisser EL, Kipanyula MJ, et al
Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses.
PLoS One. 2017;12:e0171088.
PubMed Text format Abstract available

VOROS J, Marton O, Schmidt BR, Gal JT, et al
Surveying Europe's Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA.
PLoS One. 2017;12:e0170945.
PubMed Text format Abstract available

DOS SANTOS MD, Kretschmer R, Frankl-Vilches C, Bakker A, et al
Comparative Cytogenetics between Two Important Songbird, Models: The Zebra Finch and the Canary.
PLoS One. 2017;12:e0170997.
PubMed Text format Abstract available

O'FARRELL AC, Evans R, Silvola JM, Miller IS, et al
A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate.
PLoS One. 2017;12:e0169964.
PubMed Text format Abstract available

LUND KT, Riaz S, Walker MA
Population Structure, Diversity and Reproductive Mode of the Grape Phylloxera (Daktulosphaira vitifoliae) across Its Native Range.
PLoS One. 2017;12:e0170678.
PubMed Text format Abstract available

YOTOVA I, Hsu E, Do C, Gaba A, et al
Epigenetic Alterations Affecting Transcription Factors and Signaling Pathways in Stromal Cells of Endometriosis.
PLoS One. 2017;12:e0170859.
PubMed Text format Abstract available

FU Y, Xu X, Xue J, Duan W, et al
Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis.
PLoS One. 2017;12:e0170712.
PubMed Text format Abstract available

ESCORIZA D, Ben Hassine J
Diversity of Guilds of Amphibian Larvae in North-Western Africa.
PLoS One. 2017;12:e0170763.
PubMed Text format Abstract available

TSURUTA SI, Ebina M, Kobayashi M, Takahashi W, et al
Complete Chloroplast Genomes of Erianthus arundinaceus and Miscanthus sinensis: Comparative Genomics and Evolution of the Saccharum Complex.
PLoS One. 2017;12:e0169992.
PubMed Text format Abstract available

CHEN Z, Li Z, Zhuang R, Yuan Y, et al
Adaptive Estimation of Personalized Maximum Tolerated Dose in Cancer Phase I Clinical Trials Based on All Toxicities and Individual Genomic Profile.
PLoS One. 2017;12:e0170187.
PubMed Text format Abstract available

CHA S, Srinivasan S, Jang JH, Lee D, et al
Metagenomic Analysis of Airborne Bacterial Community and Diversity in Seoul, Korea, during December 2014, Asian Dust Event.
PLoS One. 2017;12:e0170693.
PubMed Text format Abstract available

HWANG J, Park SY, Park M, Lee S, et al
Seasonal Dynamics and Metagenomic Characterization of Marine Viruses in Goseong Bay, Korea.
PLoS One. 2017;12:e0169841.
PubMed Text format Abstract available

NIU R, Liu Y, Zhang Y, Zhang Y, et al
iTRAQ-Based Proteomics Reveals Novel Biomarkers for Idiopathic Pulmonary Fibrosis.
PLoS One. 2017;12:e0170741.
PubMed Text format Abstract available

HELWA I, Cai J, Drewry MD, Zimmerman A, et al
A Comparative Study of Serum Exosome Isolation Using Differential Ultracentrifugation and Three Commercial Reagents.
PLoS One. 2017;12:e0170628.
PubMed Text format Abstract available

DE VRIES PS, Sabater-Lleal M, Chasman DI, Trompet S, et al
Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.
PLoS One. 2017;12:e0167742.
PubMed Text format Abstract available

HALLER T, Leitsalu L, Fischer K, Nuotio ML, et al
MixFit: Methodology for Computing Ancestry-Related Genetic Scores at the Individual Level and Its Application to the Estonian and Finnish Population Studies.
PLoS One. 2017;12:e0170325.
PubMed Text format Abstract available

SIRIPHAP A, Leekitcharoenphon P, Kaas RS, Theethakaew C, et al
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.
PLoS One. 2017;12:e0169324.
PubMed Text format Abstract available

CHERIFI YA, Gaouar SB, Guastamacchia R, El-Bahrawy KA, et al
Weak Genetic Structure in Northern African Dromedary Camels Reflects Their Unique Evolutionary History.
PLoS One. 2017;12:e0168672.
PubMed Text format Abstract available

GONZALEZ-WEVAR CA, Nakano T, Palma A, Poulin E, et al
Biogeography in Cellana (Patellogastropoda, Nacellidae) with Special Emphasis on the Relationships of Southern Hemisphere Oceanic Island Species.
PLoS One. 2017;12:e0170103.
PubMed Text format Abstract available

STEBNER F, Szadziewski R, Singh H, Gunkel S, et al
Biting Midges (Diptera: Ceratopogonidae) from Cambay Amber Indicate that the Eocene Fauna of the Indian Subcontinent Was Not Isolated.
PLoS One. 2017;12:e0169144.
PubMed Text format Abstract available

YE X, Liu H, Jin Y, Guo M, et al
Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection.
PLoS One. 2017;12:e0169598.
PubMed Text format Abstract available

MANICKAVELU A, Hattori T, Yamaoka S, Yoshimura K, et al
Genetic Nature of Elemental Contents in Wheat Grains and Its Genomic Prediction: Toward the Effective Use of Wheat Landraces from Afghanistan.
PLoS One. 2017;12:e0169416.
PubMed Text format Abstract available

PRIYAMVADA H, Akila M, Singh RK, Ravikrishna R, et al
Terrestrial Macrofungal Diversity from the Tropical Dry Evergreen Biome of Southern India and Its Potential Role in Aerobiology.
PLoS One. 2017;12:e0169333.
PubMed Text format Abstract available

AGULLO L, Romero-Silva MJ, Domenech M, Seeger M, et al
p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.
PLoS One. 2017;12:e0169544.
PubMed Text format Abstract available

HATOUM D, Yagoub D, Ahadi A, Nassif NT, et al
Annexin/S100A Protein Family Regulation through p14ARF-p53 Activation: A Role in Cell Survival and Predicting Treatment Outcomes in Breast Cancer.
PLoS One. 2017;12:e0169925.
PubMed Text format Abstract available

WEN HB, Cao ZM, Hua D, Xu P, et al
The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae).
PLoS One. 2017;12:e0169749.
PubMed Text format Abstract available

VIRK RK, Gunalan V, Lee HK, Inoue M, et al
Molecular Evidence of Transmission of Influenza A/H1N1 2009 on a University Campus.
PLoS One. 2017;12:e0168596.
PubMed Text format Abstract available

STROJAN K, Leonardi A, Bregar VB, Krizaj I, et al
Dispersion of Nanoparticles in Different Media Importantly Determines the Composition of Their Protein Corona.
PLoS One. 2017;12:e0169552.
PubMed Text format Abstract available

SIEGWALD L, Touzet H, Lemoine Y, Hot D, et al
Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.
PLoS One. 2017;12:e0169563.
PubMed Text format Abstract available

SCHNEIDER A, Matkovich SJ, Victoria B, Spinel L, et al
Changes of Ovarian microRNA Profile in Long-Living Ames Dwarf Mice during Aging.
PLoS One. 2017;12:e0169213.
PubMed Text format Abstract available

ASOR E, Stav MY, Simon E, Fahoum I, et al
Risk for molecular contamination of tissue samples evaluated for targeted anti-cancer therapy.
PLoS One. 2017;12:e0173760.
PubMed Text format Abstract available

KNITLOVA M, Horacek I
Late Pleistocene-Holocene paleobiogeography of the genus Apodemus in Central Europe.
PLoS One. 2017;12:e0173668.
PubMed Text format Abstract available

VARDI O, Shamir I, Javasky E, Goren A, et al
Biases in the SMART-DNA library preparation method associated with genomic poly dA/dT sequences.
PLoS One. 2017;12:e0172769.
PubMed Text format Abstract available

FORTI LR, Lingnau R, Encarnacao LC, Bertoluci J, et al
Can treefrog phylogeographical clades and species' phylogenetic topologies be recovered by bioacoustical analyses?
PLoS One. 2017;12:e0169911.
PubMed Text format Abstract available

PELLETIER A, Obbard ME, Harnden M, McConnell S, et al
Determining causes of genetic isolation in a large carnivore (Ursus americanus) population to direct contemporary conservation measures.
PLoS One. 2017;12:e0172319.
PubMed Text format Abstract available

SHEVCHENKO A, Yang Y, Knaust A, Verbavatz JM, et al
Open sesame: Identification of sesame oil and oil soot ink in organic deposits of Tang Dynasty lamps from Astana necropolis in China.
PLoS One. 2017;12:e0158636.
PubMed Text format Abstract available

VEGA-CABRERA LA, Guerrero A, Rodriguez-Mejia JL, Tabche ML, et al
Analysis of Spo0M function in Bacillus subtilis.
PLoS One. 2017;12:e0172737.
PubMed Text format Abstract available

GONZALEZ AV, Santelices B
Frequency of chimerism in populations of the kelp Lessonia spicata in central Chile.
PLoS One. 2017;12:e0169182.
PubMed Text format Abstract available

UR REHMAN H, Azam N, Yao J, Benso A, et al
A three-way approach for protein function classification.
PLoS One. 2017;12:e0171702.
PubMed Text format Abstract available

KUZNIAR A, Laffeber C, Eppink B, Bezstarosti K, et al
Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields.
PLoS One. 2017;12:e0170762.
PubMed Text format Abstract available

CHO YE, Im EJ, Moon PG, Mezey E, et al
Increased liver-specific proteins in circulating extracellular vesicles as potential biomarkers for drug- and alcohol-induced liver injury.
PLoS One. 2017;12:e0172463.
PubMed Text format Abstract available

IJAZ UZ, Quince C, Hanske L, Loman N, et al
The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
PLoS One. 2017;12:e0172605.
PubMed Text format Abstract available

LI S, Li D, Zhao X, Wang Y, et al
A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken.
PLoS One. 2017;12:e0172211.
PubMed Text format Abstract available

QIN L, Liu X, Liu S, Liu Y, et al
Differentially expressed proteins underlying childhood cortical dysplasia with epilepsy identified by iTRAQ proteomic profiling.
PLoS One. 2017;12:e0172214.
PubMed Text format Abstract available

DUAN X, Wang K, Su S, Tian R, et al
De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae).
PLoS One. 2017;12:e0172513.
PubMed Text format Abstract available

LU X, Kang X, Liu Y, Cui Z, et al
HIV-1 molecular epidemiology among newly diagnosed HIV-1 individuals in Hebei, a low HIV prevalence province in China.
PLoS One. 2017;12:e0171481.
PubMed Text format Abstract available

TAYABALI AF, Coleman G, Crosthwait J, Nguyen KC, et al
Composition and pathogenic potential of a microbial bioremediation product used for crude oil degradation.
PLoS One. 2017;12:e0171911.
PubMed Text format Abstract available

LIMA DF, de Lima LI, Rocha JA, de Andrade IM, et al
Seasonal change in main alkaloids of jaborandi (Pilocarpus microphyllus Stapf ex Wardleworth), an economically important species from the Brazilian flora.
PLoS One. 2017;12:e0170281.
PubMed Text format Abstract available

WAIHO K, Fazhan H, Shahreza MS, Moh JH, et al
Transcriptome Analysis and Differential Gene Expression on the Testis of Orange Mud Crab, Scylla olivacea, during Sexual Maturation.
PLoS One. 2017;12:e0171095.
PubMed Text format Abstract available

ZHANG X, Mu Y, Mu P, Ao J, et al
Transcriptome Analysis Reveals Comprehensive Insights into the Early Immune Response of Large Yellow Croaker (Larimichthys crocea) Induced by Trivalent Bacterial Vaccine.
PLoS One. 2017;12:e0170958.
PubMed Text format Abstract available

N'DIAYE A, Haile JK, Cory AT, Clarke FR, et al
Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.
PLoS One. 2017;12:e0170941.
PubMed Text format Abstract available

ANGELONE-ALASAAD S, Biebach I, Perez JM, Soriguer RC, et al
Molecular Analyses Reveal Unexpected Genetic Structure in Iberian Ibex Populations.
PLoS One. 2017;12:e0170827.
PubMed Text format Abstract available

SOLLANEK KJ, Burniston JG, Kavazis AN, Morton AB, et al
Global Proteome Changes in the Rat Diaphragm Induced by Endurance Exercise Training.
PLoS One. 2017;12:e0171007.
PubMed Text format Abstract available

HUANG X, Zang X, Wu F, Jin Y, et al
Transcriptome Sequencing of Gracilariopsis lemaneiformis to Analyze the Genes Related to Optically Active Phycoerythrin Synthesis.
PLoS One. 2017;12:e0170855.
PubMed Text format Abstract available

ZHANG D, Xia X, Wang X, Zhang P, et al
PGRMC1 Is a Novel Potential Tumor Biomarker of Human Renal Cell Carcinoma Based on Quantitative Proteomic and Integrative Biological Assessments.
PLoS One. 2017;12:e0170453.
PubMed Text format Abstract available

PANTOJA-MELENDEZ CA, Miranda-Duarte A, Roque-Ramirez B, Zenteno JC, et al
Epidemiological and Molecular Characterization of a Mexican Population Isolate with High Prevalence of Limb-Girdle Muscular Dystrophy Type 2A Due to a Novel Calpain-3 Mutation.
PLoS One. 2017;12:e0170280.
PubMed Text format Abstract available

RODRIGUES RT, Chizzotti ML, Vital CE, Baracat-Pereira MC, et al
Differences in Beef Quality between Angus (Bos taurus taurus) and Nellore (Bos taurus indicus) Cattle through a Proteomic and Phosphoproteomic Approach.
PLoS One. 2017;12:e0170294.
PubMed Text format Abstract available

CHO IT, Lim Y, Golden JA, Cho G, et al
Aristaless Related Homeobox (ARX) Interacts with beta-Catenin, BCL9, and P300 to Regulate Canonical Wnt Signaling.
PLoS One. 2017;12:e0170282.
PubMed Text format Abstract available

HJELMSO MH, Hellmer M, Fernandez-Cassi X, Timoneda N, et al
Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing.
PLoS One. 2017;12:e0170199.
PubMed Text format Abstract available

HE C, Fu J, Zhang J, Li Y, et al
A Gene-Oriented Haplotype Comparison Reveals Recently Selected Genomic Regions in Temperate and Tropical Maize Germplasm.
PLoS One. 2017;12:e0169806.
PubMed Text format Abstract available

VOLLMERS J, Wiegand S, Kaster AK
Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!
PLoS One. 2017;12:e0169662.
PubMed Text format Abstract available

VESTY A, Biswas K, Taylor MW, Gear K, et al
Evaluating the Impact of DNA Extraction Method on the Representation of Human Oral Bacterial and Fungal Communities.
PLoS One. 2017;12:e0169877.
PubMed Text format Abstract available

YANG Y, Lian S, Meng L, Qu L, et al
Antibody Array Revealed PRL-3 Affects Protein Phosphorylation and Cytokine Secretion.
PLoS One. 2017;12:e0169665.
PubMed Text format Abstract available

GELIN P, Fauvelot C, Mehn V, Bureau S, et al
Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type beta in Reunion Island, South Western Indian Ocean.
PLoS One. 2017;12:e0169692.
PubMed Text format Abstract available

GUARINO MP, Altomare A, Barera S, Locato V, et al
Effect of Inulin on Proteome Changes Induced by Pathogenic Lipopolysaccharide in Human Colon.
PLoS One. 2017;12:e0169481.
PubMed Text format Abstract available

BIAZZI E, Nazzicari N, Pecetti L, Brummer EC, et al
Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits.
PLoS One. 2017;12:e0169234.
PubMed Text format Abstract available

ORTIZ ME, Bleckwedel J, Fadda S, Picariello G, et al
Global Analysis of Mannitol 2-Dehydrogenase in Lactobacillus reuteri CRL 1101 during Mannitol Production through Enzymatic, Genetic and Proteomic Approaches.
PLoS One. 2017;12:e0169441.
PubMed Text format Abstract available

HAN Z, Kautto L, Nevalainen H
Secretion of Proteases by an Opportunistic Fungal Pathogen Scedosporium aurantiacum.
PLoS One. 2017;12:e0169403.
PubMed Text format Abstract available

HOFF ML, Fabrizius A, Czech-Damal NU, Folkow LP, et al
Transcriptome Analysis Identifies Key Metabolic Changes in the Hooded Seal (Cystophora cristata) Brain in Response to Hypoxia and Reoxygenation.
PLoS One. 2017;12:e0169366.
PubMed Text format Abstract available

KUO HW, Shih CL, Tsung JH, Liu SW, et al
Pharmacogenomics study on cadherin 2 network with regard to HIV infection and methadone treatment outcome.
PLoS One. 2017;12:e0174647.
PubMed Text format Abstract available

QIN Y, Djabou AS, An F, Li K, et al
Proteomic analysis of injured storage roots in cassava (Manihot esculenta Crantz) under postharvest physiological deterioration.
PLoS One. 2017;12:e0174238.
PubMed Text format Abstract available

ARMERO A, Baudouin L, Bocs S, This D, et al
Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.
PLoS One. 2017;12:e0173300.
PubMed Text format Abstract available

EIRIN A, Zhu XY, Puranik AS, Woollard JR, et al
Integrated transcriptomic and proteomic analysis of the molecular cargo of extracellular vesicles derived from porcine adipose tissue-derived mesenchymal stem cells.
PLoS One. 2017;12:e0174303.
PubMed Text format Abstract available

HOLMILA R, Sklias A, Muller DC, Degli Esposti D, et al
Targeted deep sequencing of plasma circulating cell-free DNA reveals Vimentin and Fibulin 1 as potential epigenetic biomarkers for hepatocellular carcinoma.
PLoS One. 2017;12:e0174265.
PubMed Text format Abstract available

LOWDON RF, Wang T
Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancer.
PLoS One. 2017;12:e0174032.
PubMed Text format Abstract available

NAGA PRASAD SV, Gupta MK, Duan ZH, Surampudi VS, et al
A unique microRNA profile in end-stage heart failure indicates alterations in specific cardiovascular signaling networks.
PLoS One. 2017;12:e0170456.
PubMed Text format Abstract available

GUAYASAMIN JM, Hutter CR, Tapia EE, Culebras J, et al
Diversification of the rainfrog Pristimantis ornatissimus in the lowlands and Andean foothills of Ecuador.
PLoS One. 2017;12:e0172615.
PubMed Text format Abstract available

MCDOUGALL CA, Welsh AB, Gosselin T, Anderson WG, et al
Rethinking the influence of hydroelectric development on gene flow in a long-lived fish, the Lake Sturgeon Acipenser fulvescens.
PLoS One. 2017;12:e0174269.
PubMed Text format Abstract available

GANTUZ M, Lorenzetti MA, Chabay PA, Preciado MV, et al
A novel recombinant variant of latent membrane protein 1 from Epstein Barr virus in Argentina denotes phylogeographical association.
PLoS One. 2017;12:e0174221.
PubMed Text format Abstract available

QI H, Song K, Li C, Wang W, et al
Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas).
PLoS One. 2017;12:e0174007.
PubMed Text format Abstract available

HATTHAKAROON C, Pharkjaksu S, Chongtrakool P, Suwannakarn K, et al
Molecular epidemiology of cryptococcal genotype VNIc/ST5 in Siriraj Hospital, Thailand.
PLoS One. 2017;12:e0173744.
PubMed Text format Abstract available

CHI W, Gao Y, Hu Q, Guo W, et al
Genome-wide analysis of brain and gonad transcripts reveals changes of key sex reversal-related genes expression and signaling pathways in three stages of Monopterus albus.
PLoS One. 2017;12:e0173974.
PubMed Text format Abstract available

CHEN PC, Shih CH, Chu TJ, Lee YC, et al
Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia.
PLoS One. 2017;12:e0173490.
PubMed Text format Abstract available

HE S, Wang H, Liu R, He M, et al
mRNA N6-methyladenosine methylation of postnatal liver development in pig.
PLoS One. 2017;12:e0173421.
PubMed Text format Abstract available

PFEIFFER W, Braun J, Burchell J, Witte CL, et al
Whole-genome analysis of mycobacteria from birds at the San Diego Zoo.
PLoS One. 2017;12:e0173464.
PubMed Text format Abstract available

KANG Z, Zhang X, Ding S, Tang C, et al
Transcriptomes of three species of Tipuloidea (Diptera, Tipulomorpha) and implications for phylogeny of Tipulomorpha.
PLoS One. 2017;12:e0173207.
PubMed Text format Abstract available

ZHOU T, Souzeau E, Sharma S, Landers J, et al
Whole exome sequencing implicates eye development, the unfolded protein response and plasma membrane homeostasis in primary open-angle glaucoma.
PLoS One. 2017;12:e0172427.
PubMed Text format Abstract available

POLLEGIONI P, Woeste K, Chiocchini F, Del Lungo S, et al
Rethinking the history of common walnut (Juglans regia L.) in Europe: Its origins and human interactions.
PLoS One. 2017;12:e0172541.
PubMed Text format Abstract available

ELDRIDGE MD, Miller EJ, Neaves LE, Zenger KR, et al
Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii).
PLoS One. 2017;12:e0172777.
PubMed Text format Abstract available

LI R, Chen D, Wang T, Wan Y, et al
High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba).
PLoS One. 2017;12:e0172883.
PubMed Text format Abstract available

MUNOZ S, Guerrero FD, Kellogg A, Heekin AM, et al
Bioinformatic prediction of G protein-coupled receptor encoding sequences from the transcriptome of the foreleg, including the Haller's organ, of the cattle tick, Rhipicephalus australis.
PLoS One. 2017;12:e0172326.
PubMed Text format Abstract available

RUDQVIST N, Spetz J, Schuler E, Parris TZ, et al
Transcriptional response to 131I exposure of rat thyroid gland.
PLoS One. 2017;12:e0171797.
PubMed Text format Abstract available

ZHU C, Pan Z, Wang H, Chang G, et al
De novo assembly, characterization and annotation for the transcriptome of Sarcocheilichthys sinensis.
PLoS One. 2017;12:e0171966.
PubMed Text format Abstract available

RIZWAN M, Aslam M, Asghar MJ, Abbas G, et al
Pre-breeding of lentil (Lens culinaris Medik.) for herbicide resistance through seed mutagenesis.
PLoS One. 2017;12:e0171846.
PubMed Text format Abstract available

WU B, Hu Y, Huo P, Zhang Q, et al
Transcriptome analysis of hexaploid hulless oat in response to salinity stress.
PLoS One. 2017;12:e0171451.
PubMed Text format Abstract available

ZYCH K, Snoek BL, Elvin M, Rodriguez M, et al
reGenotyper: Detecting mislabeled samples in genetic data.
PLoS One. 2017;12:e0171324.
PubMed Text format Abstract available

BACKMAN TW, Evans DS, Girke T
Large-scale bioactivity analysis of the small-molecule assayed proteome.
PLoS One. 2017;12:e0171413.
PubMed Text format Abstract available

MASSAFRA V, Milona A, Vos HR, Burgering BM, et al
Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation.
PLoS One. 2017;12:e0171185.
PubMed Text format Abstract available

OMIDVAR V, Mohorianu I, Dalmay T, Zheng Y, et al
Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant.
PLoS One. 2017;12:e0170715.
PubMed Text format Abstract available

BAI S, Chen H, Zhu L, Liu W, et al
Comparative study on the in vitro effects of Pseudomonas aeruginosa and seaweed alginates on human gut microbiota.
PLoS One. 2017;12:e0171576.
PubMed Text format Abstract available

YANG MQ, Li DZ, Wen J, Yi TS, et al
Phylogeny and biogeography of the amphi-Pacific genus Aphananthe.
PLoS One. 2017;12:e0171405.
PubMed Text format Abstract available

POLANSKI A, Szczesna A, Garbulowski M, Kimmel M, et al
Coalescence computations for large samples drawn from populations of time-varying sizes.
PLoS One. 2017;12:e0170701.
PubMed Text format Abstract available

COX MJ, Turek EM, Hennessy C, Mirza GK, et al
Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients.
PLoS One. 2017;12:e0170622.
PubMed Text format Abstract available

VON SALTZWEDEL H, Scheu S, Schaefer I
Genetic structure and distribution of Parisotoma notabilis (Collembola) in Europe: Cryptic diversity, split of lineages and colonization patterns.
PLoS One. 2017;12:e0170909.
PubMed Text format Abstract available

REYNAUD Y, Zheng C, Wu G, Sun Q, et al
Bayesian population structure analysis reveals presence of phylogeographically specific sublineages within previously ill-defined T group of Mycobacterium tuberculosis.
PLoS One. 2017;12:e0171584.
PubMed Text format Abstract available

HUANG N, Wang W, Yao Y, Zhu F, et al
The influence of different concentrations of bio-organic fertilizer on cucumber Fusarium wilt and soil microflora alterations.
PLoS One. 2017;12:e0171490.
PubMed Text format Abstract available

ZOU Z, Liu J, Yang L, Xie G, et al
Survey of the rubber tree genome reveals a high number of cysteine protease-encoding genes homologous to Arabidopsis SAG12.
PLoS One. 2017;12:e0171725.
PubMed Text format Abstract available

VAN GOOR A, Ashwell CM, Persia ME, Rothschild MF, et al
Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat.
PLoS One. 2017;12:e0171414.
PubMed Text format Abstract available

ZUO LH, Shang AQ, Zhang S, Yu XY, et al
The first complete chloroplast genome sequences of Ulmus species by de novo sequencing: Genome comparative and taxonomic position analysis.
PLoS One. 2017;12:e0171264.
PubMed Text format Abstract available

LEE MY, Park C, Ha SE, Park PJ, et al
Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels.
PLoS One. 2017;12:e0171262.
PubMed Text format Abstract available

MARTINS CO, Demarchi L, Ferreira FM, Pomerantzeff PM, et al
Rheumatic Heart Disease and Myxomatous Degeneration: Differences and Similarities of Valve Damage Resulting from Autoimmune Reactions and Matrix Disorganization.
PLoS One. 2017;12:e0170191.
PubMed Text format Abstract available

VILA M, Hermida M, Fernandez C, Perea S, et al
Phylogeography and Conservation Genetics of the Ibero-Balearic Three-Spined Stickleback (Gasterosteus aculeatus).
PLoS One. 2017;12:e0170685.
PubMed Text format Abstract available

EBERHARDT C, Thillai M, Parker R, Siddiqui N, et al
Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis.
PLoS One. 2017;12:e0170285.
PubMed Text format Abstract available

WANG H, Zhao S, Gao Y, Yang J, et al
Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa).
PLoS One. 2017;12:e0170210.
PubMed Text format Abstract available

FRAIJA-FERNANDEZ N, Fernandez M, Lehnert K, Raga JA, et al
Long-Distance Travellers: Phylogeography of a Generalist Parasite, Pholeter gastrophilus, from Cetaceans.
PLoS One. 2017;12:e0170184.
PubMed Text format Abstract available

WOO HJ, Yu C, Reifman J
Collective Genetic Interaction Effects and the Role of Antigen-Presenting Cells in Autoimmune Diseases.
PLoS One. 2017;12:e0169918.
PubMed Text format Abstract available

GRANT LR, O'Brien KL, Weatherholtz RC, Reid R, et al
Norovirus and Sapovirus Epidemiology and Strain Characteristics among Navajo and Apache Infants.
PLoS One. 2017;12:e0169491.
PubMed Text format Abstract available

XI Y, Jiao W, Cao J, Jiang W, et al
Effects of chlorogenic acid on capacity of free radicals scavenging and proteomic changes in postharvest fruit of nectarine.
PLoS One. 2017;12:e0182494.
PubMed Text format Abstract available

KUMAR S, Subbarao BL, Kumari R, Hallan V, et al
Molecular characterization of a novel cryptic virus infecting pigeonpea plants.
PLoS One. 2017;12:e0181829.
PubMed Text format Abstract available

ANEL-LOPEZ L, Ortega-Ferrusola C, Martinez-Rodriguez C, Alvarez M, et al
Analysis of seminal plasma from brown bear (Ursus arctos) during the breeding season: Its relationship with testosterone levels.
PLoS One. 2017;12:e0181776.
PubMed Text format Abstract available

DHARMAYANTHI AB, Terai Y, Sulandari S, Zein MS, et al
The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.
PLoS One. 2017;12:e0173147.
PubMed Text format Abstract available

LLUVERAS-TENORIO A, Vinciguerra R, Galano E, Blaensdorf C, et al
GC/MS and proteomics to unravel the painting history of the lost Giant Buddhas of Bamiyan (Afghanistan).
PLoS One. 2017;12:e0172990.
PubMed Text format Abstract available

RUTKOWSKI R, Zawadzka D, Suchecka E, Merta D, et al
Conservation genetics of the capercaillie in Poland - Delineation of conservation units.
PLoS One. 2017;12:e0174901.
PubMed Text format Abstract available

EDWARDS RD, Crisp MD, Cook DH, Cook LG, et al
Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics.
PLoS One. 2017;12:e0174812.
PubMed Text format Abstract available

SUN Y, Guo W, Wang F, Zhan C, et al
Transcriptome analysis of Corynebacterium glutamicum in the process of recombinant protein expression in bioreactors.
PLoS One. 2017;12:e0174824.
PubMed Text format Abstract available

GUINOISEAU T, Moreau A, Hohnadel G, Ngo-Giang-Huong N, et al
Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.
PLoS One. 2017;12:e0174852.
PubMed Text format Abstract available

PELLON A, Ramirez-Garcia A, Buldain I, Antoran A, et al
Molecular and cellular responses of the pathogenic fungus Lomentospora prolificans to the antifungal drug voriconazole.
PLoS One. 2017;12:e0174885.
PubMed Text format Abstract available

LI Y, Urban A, Midura D, Simon HG, et al
Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-kappaB in epicardial EMT.
PLoS One. 2017;12:e0174563.
PubMed Text format Abstract available

LI Y, Morrow J, Raby B, Tantisira K, et al
Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data.
PLoS One. 2017;12:e0174602.
PubMed Text format Abstract available

DECAP D, Reumers J, Herzeel C, Costanza P, et al
Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.
PLoS One. 2017;12:e0174575.
PubMed Text format Abstract available

MEINERT C, Brandt U, Heine V, Beyert J, et al
Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.
PLoS One. 2017;12:e0174256.
PubMed Text format Abstract available

ARNAU G, Bhattacharjee R, Mn S, Chair H, et al
Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.
PLoS One. 2017;12:e0174150.
PubMed Text format Abstract available

WARD LJ, Ljunggren SA, Karlsson H, Li W, et al
Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages.
PLoS One. 2017;12:e0174475.
PubMed Text format Abstract available

ZOU B, Li J, Zhou Q, Quan ZX, et al
MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
PLoS One. 2017;12:e0174609.
PubMed Text format Abstract available

MARROTTE RR, Bowman J
The relationship between least-cost and resistance distance.
PLoS One. 2017;12:e0174212.
PubMed Text format Abstract available

BYRUM SD, Burdine MS, Orr L, Mackintosh SG, et al
Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection.
PLoS One. 2017;12:e0174771.
PubMed Text format Abstract available

WOOD LE, De Grave S, Daniels SR
Phylogeographic patterning among two codistributed shrimp species (Crustacea: Decapoda: Palaemonidae) reveals high levels of connectivity across biogeographic regions along the South African coast.
PLoS One. 2017;12:e0173356.
PubMed Text format Abstract available

PAGES-MONTEIRO L, Marti R, Commun C, Alliot N, et al
Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa.
PLoS One. 2017;12:e0173022.
PubMed Text format Abstract available

REZNICK DN, Furness AI, Meredith RW, Springer MS, et al
The origin and biogeographic diversification of fishes in the family Poeciliidae.
PLoS One. 2017;12:e0172546.
PubMed Text format Abstract available

WANG Z, Fan G, Dong Y, Zhai X, et al
Implications of polyploidy events on the phenotype, microstructure, and proteome of Paulownia australis.
PLoS One. 2017;12:e0172633.
PubMed Text format Abstract available

CHENG J, Romantsov T, Engel K, Doxey AC, et al
Functional metagenomics reveals novel beta-galactosidases not predictable from gene sequences.
PLoS One. 2017;12:e0172545.
PubMed Text format Abstract available

PERUMAL N, Manicam C, Steinicke M, Funke S, et al
Characterization of the human aqueous humour proteome: A comparison of the genders.
PLoS One. 2017;12:e0172481.
PubMed Text format Abstract available

HTUN NM, Magliano DJ, Zhang ZY, Lyons J, et al
Prediction of acute coronary syndromes by urinary proteome analysis.
PLoS One. 2017;12:e0172036.
PubMed Text format Abstract available

GEBHARDT MJ, Jacobson RK, Shuman HA
Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria.
PLoS One. 2017;12:e0173116.
PubMed Text format Abstract available

NAKAOKA T, Iga M, Yamada T, Koujima I, et al
Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.
PLoS One. 2017;12:e0172951.
PubMed Text format Abstract available

BATISTA ME, Silva DD, Sales MA, Sa AA, et al
New data on the stem and leaf anatomy of two conifers from the Lower Cretaceous of the Araripe Basin, northeastern Brazil, and their taxonomic and paleoecological implications.
PLoS One. 2017;12:e0173090.
PubMed Text format Abstract available

BRYANT AE, Aldape MJ, Bayer CR, Katahira EJ, et al
Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.
PLoS One. 2017;12:e0172486.
PubMed Text format Abstract available

BENEVENUTO RF, Agapito-Tenfen SZ, Vilperte V, Wikmark OG, et al
Molecular responses of genetically modified maize to abiotic stresses as determined through proteomic and metabolomic analyses.
PLoS One. 2017;12:e0173069.
PubMed Text format Abstract available

PRICE A, Garhyan J, Gibas C
The impact of RNA secondary structure on read start locations on the Illumina sequencing platform.
PLoS One. 2017;12:e0173023.
PubMed Text format Abstract available

FOSCHI C, Laghi L, Parolin C, Giordani B, et al
Novel approaches for the taxonomic and metabolic characterization of lactobacilli: Integration of 16S rRNA gene sequencing with MALDI-TOF MS and 1H-NMR.
PLoS One. 2017;12:e0172483.
PubMed Text format Abstract available

VARGAS-CARO C, Bustamante C, Bennett MB, Ovenden JR, et al
Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean.
PLoS One. 2017;12:e0172255.
PubMed Text format Abstract available

SERGEANT K, Printz B, Gutsch A, Behr M, et al
Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases.
PLoS One. 2017;12:e0171990.
PubMed Text format Abstract available

WANG R, Cui Y, Xu Y, Irudayaraj J, et al
Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-beta-carboline (TaClo) in vitro.
PLoS One. 2017;12:e0172243.
PubMed Text format Abstract available

KAMFWA K, Zhao D, Kelly JD, Cichy KA, et al
Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation.
PLoS One. 2017;12:e0172141.
PubMed Text format Abstract available

PARK YJ, Koh J, Kwon JT, Park YS, et al
Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes.
PLoS One. 2017;12:e0169677.
PubMed Text format Abstract available

SAKAKI M, Ebihara Y, Okamura K, Nakabayashi K, et al
Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses.
PLoS One. 2017;12:e0171431.
PubMed Text format Abstract available

LI YH, Wang HP, Yao H, O'Bryant P, et al
De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens.
PLoS One. 2017;12:e0171187.
PubMed Text format Abstract available

HAMILTON SL, Logan CA, Fennie HW, Sogard SM, et al
Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics.
PLoS One. 2017;12:e0169670.
PubMed Text format Abstract available

ZACHER B, Michel M, Schwalb B, Cramer P, et al
Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
PLoS One. 2017;12:e0169249.
PubMed Text format Abstract available

BEISSER D, Kaschani F, Graupner N, Grossmann L, et al
Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
PLoS One. 2017;12:e0168183.
PubMed Text format Abstract available

NANDAKUMAR P, Tin A, Grove ML, Ma J, et al
MicroRNAs in the miR-17 and miR-15 families are downregulated in chronic kidney disease with hypertension.
PLoS One. 2017;12:e0176734.
PubMed Text format Abstract available

CLARKE B, Mahapatra M, Friedgut O, Bumbarov V, et al
Persistence of Lineage IV Peste-des-petits ruminants virus within Israel since 1993: An evolutionary perspective.
PLoS One. 2017;12:e0177028.
PubMed Text format Abstract available

SONG J, Hu Y, Li J, Zheng H, et al
Different microRNA profiles reveal the diverse outcomes induced by EV71 and CA16 infection in human umbilical vein endothelial cells using high-throughput sequencing.
PLoS One. 2017;12:e0177657.
PubMed Text format Abstract available

MORALES-CORREA E CASTRO AC, Barbosa NCCP
Recent evolutionary history of Chrysoperla externa (Hagen 1861) (Neuroptera: Chrysopidae) in Brazil.
PLoS One. 2017;12:e0177414.
PubMed Text format Abstract available

CARRERAS-PLANELLA L, Soler-Majoral J, Rubio-Esteve C, Lozano-Ramos SI, et al
Characterization and proteomic profile of extracellular vesicles from peritoneal dialysis efflux.
PLoS One. 2017;12:e0176987.
PubMed Text format Abstract available

KARAH N, Jolley KA, Hall RM, Uhlin BE, et al
Database for the ampC alleles in Acinetobacter baumannii.
PLoS One. 2017;12:e0176695.
PubMed Text format Abstract available

ZHU Y, Zhou G, Yu X, Xu Q, et al
LC-MS-MS quantitative analysis reveals the association between FTO and DNA methylation.
PLoS One. 2017;12:e0175849.
PubMed Text format Abstract available

RODRIGUES J, Viegas W, Silva M
45S rDNA external transcribed spacer organization reveals new phylogenetic relationships in Avena genus.
PLoS One. 2017;12:e0176170.
PubMed Text format Abstract available

WANG J, Pei L, Jin Z, Zhang K, et al
Overexpression of the protein phosphatase 2A regulatory subunit a gene ZmPP2AA1 improves low phosphate tolerance by remodeling the root system architecture of maize.
PLoS One. 2017;12:e0176538.
PubMed Text format Abstract available

YARYGIN K, Tyakht A, Larin A, Kostryukova E, et al
Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses.
PLoS One. 2017;12:e0176154.
PubMed Text format Abstract available

RAYMOND CK, Hernandez J, Karr R, Hill K, et al
Collection of cell-free DNA for genomic analysis of solid tumors in a clinical laboratory setting.
PLoS One. 2017;12:e0176241.
PubMed Text format Abstract available

RUEDA-ZARATE HA, Imaz-Rosshandler I, Cardenas-Ovando RA, Castillo-Fernandez JE, et al
A computational toxicogenomics approach identifies a list of highly hepatotoxic compounds from a large microarray database.
PLoS One. 2017;12:e0176284.
PubMed Text format Abstract available

NAOUR S, Espinoza BM, Aedo JE, Zuloaga R, et al
Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis.
PLoS One. 2017;12:e0176447.
PubMed Text format Abstract available

BARUAH IK, Panda D, M V J, Das DJ, et al
Bruchid egg induced transcript dynamics in developing seeds of black gram (Vigna mungo).
PLoS One. 2017;12:e0176337.
PubMed Text format Abstract available

ROOMP K, Kristinsson H, Schvartz D, Ubhayasekera K, et al
Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism.
PLoS One. 2017;12:e0176391.
PubMed Text format Abstract available

FUKUDA T, Nomura M, Kato Y, Tojo H, et al
A selected reaction monitoring mass spectrometric assessment of biomarker candidates diagnosing large-cell neuroendocrine lung carcinoma by the scaling method using endogenous references.
PLoS One. 2017;12:e0176219.
PubMed Text format Abstract available

NORONHA FERNANDES-BRUM C, Marinho Rezende P, Cherubino Ribeiro TH, Ricon de Oliveira R, et al
A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms.
PLoS One. 2017;12:e0176333.
PubMed Text format Abstract available

JEONG C, Peter BM, Basnyat B, Neupane M, et al
A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau.
PLoS One. 2017;12:e0175885.
PubMed Text format Abstract available

VIANA MVC, Figueiredo H, Ramos R, Guimaraes LC, et al
Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.
PLoS One. 2017;12:e0176347.
PubMed Text format Abstract available

ONUKI R, Yamaguchi R, Shibuya T, Kanehisa M, et al
Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks.
PLoS One. 2017;12:e0176530.
PubMed Text format Abstract available

WELINDER C, Pawlowski K, Szasz AM, Yakovleva M, et al
Correlation of histopathologic characteristics to protein expression and function in malignant melanoma.
PLoS One. 2017;12:e0176167.
PubMed Text format Abstract available

SINGH SK, Aspi J, Kvist L, Sharma R, et al
Fine-scale population genetic structure of the Bengal tiger (Panthera tigris tigris) in a human-dominated western Terai Arc Landscape, India.
PLoS One. 2017;12:e0174371.
PubMed Text format Abstract available

SALEHE BR, Jones CI, Di Fatta G, McGuffin LJ, et al
RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses.
PLoS One. 2017;12:e0175957.
PubMed Text format Abstract available

NAVARRO G, Martinez-Pinilla E, Sanchez-Melgar A, Ortiz R, et al
A genomics approach identifies selective effects of trans-resveratrol in cerebral cortex neuron and glia gene expression.
PLoS One. 2017;12:e0176067.
PubMed Text format Abstract available

OH J, Lee S, Lee H, Cho JY, et al
The novel carboxylesterase 1 variant c.662A>G may decrease the bioactivation of oseltamivir in humans.
PLoS One. 2017;12:e0176320.
PubMed Text format Abstract available

FRANCOIS L, Wijnrocx K, Colinet FG, Gengler N, et al
Genomics of a revived breed: Case study of the Belgian campine cattle.
PLoS One. 2017;12:e0175916.
PubMed Text format Abstract available

LI YZ, Fan XW, Chen Q, Zhong H, et al
A photoperiod-responsive protein compendium and conceptual proteome roadmap outline in maize grown in growth chambers with controlled conditions.
PLoS One. 2017;12:e0174003.
PubMed Text format Abstract available

LV J, Zhang L, Liu P, Li J, et al
Transcriptomic variation of eyestalk reveals the genes and biological processes associated with molting in Portunus trituberculatus.
PLoS One. 2017;12:e0175315.
PubMed Text format Abstract available

MURPHY SN, Avillach P, Bellazzi R, Phillips L, et al
Combining clinical and genomics queries using i2b2 - Three methods.
PLoS One. 2017;12:e0172187.
PubMed Text format Abstract available

MARITZ JM, Sullivan SA, Prill RJ, Aksoy E, et al
Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.
PLoS One. 2017;12:e0175527.
PubMed Text format Abstract available

RIBEIRO MM, Piotti A, Ricardo A, Gaspar D, et al
Genetic diversity and divergence at the Arbutus unedo L. (Ericaceae) westernmost distribution limit.
PLoS One. 2017;12:e0175239.
PubMed Text format Abstract available

LUDINGTON WB, Seher TD, Applegate O, Li X, et al
Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater.
PLoS One. 2017;12:e0174930.
PubMed Text format Abstract available

WEI LH, Yan S, Teo YY, Huang YZ, et al
Phylogeography of Y-chromosome haplogroup O3a2b2-N6 reveals patrilineal traces of Austronesian populations on the eastern coastal regions of Asia.
PLoS One. 2017;12:e0175080.
PubMed Text format Abstract available

ZHANG LJ, Cai WZ, Luo JY, Zhang S, et al
Phylogeographic patterns of Lygus pratensis (Hemiptera: Miridae): Evidence for weak genetic structure and recent expansion in northwest China.
PLoS One. 2017;12:e0174712.
PubMed Text format Abstract available

NICHOLAS A, Kim YK, Lee WK, Selasi GN, et al
Molecular epidemiology and antimicrobial susceptibility of Clostridium difficile isolates from two Korean hospitals.
PLoS One. 2017;12:e0174716.
PubMed Text format Abstract available

WAN X, Zhao X, Yau SS
An information-based network approach for protein classification.
PLoS One. 2017;12:e0174386.
PubMed Text format Abstract available

SONG YN, Dong S, Wei B, Liu P, et al
Metabolomic mechanisms of gypenoside against liver fibrosis in rats: An integrative analysis of proteomics and metabolomics data.
PLoS One. 2017;12:e0173598.
PubMed Text format Abstract available

FUKAGAWA T, Takafuji K, Tachibanaki S, Kawamura S, et al
Purification of cone outer segment for proteomic analysis on its membrane proteins in carp retina.
PLoS One. 2017;12:e0173908.
PubMed Text format Abstract available

CELIS JS, Edgell DR, Stelbrink B, Wibberg D, et al
Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
PLoS One. 2017;12:e0173734.
PubMed Text format Abstract available

LIU T, Luo C, Wang J, Ma J, et al
Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens.
PLoS One. 2017;12:e0173620.
PubMed Text format Abstract available

GUERRERO-JIMENEZ CJ, Pena F, Morales P, Mendez M, et al
Pattern of genetic differentiation of an incipient speciation process: The case of the high Andean killifish Orestias.
PLoS One. 2017;12:e0170380.
PubMed Text format Abstract available

CHRISTENSEN KA, Davidson WS
Autopolyploidy genome duplication preserves other ancient genome duplications in Atlantic salmon (Salmo salar).
PLoS One. 2017;12:e0173053.
PubMed Text format Abstract available

MATSUDA F, Kinoshita S, Nishino S, Tomita A, et al
Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism.
PLoS One. 2017;12:e0172742.
PubMed Text format Abstract available

LI J, Yang B, Shi M, Yuan K, et al
Effects upon metabolic pathways and energy production by Sb(III) and As(III)/Sb(III)-oxidase gene aioA in Agrobacterium tumefaciens GW4.
PLoS One. 2017;12:e0172823.
PubMed Text format Abstract available

HAFT DR, Haft DH
A comprehensive software suite for protein family construction and functional site prediction.
PLoS One. 2017;12:e0171758.
PubMed Text format Abstract available

MICALLEF G, Cash P, Fernandes JM, Rajan B, et al
Dietary Yeast Cell Wall Extract Alters the Proteome of the Skin Mucous Barrier in Atlantic Salmon (Salmo salar): Increased Abundance and Expression of a Calreticulin-Like Protein.
PLoS One. 2017;12:e0169075.
PubMed Text format Abstract available

ELMI AA, Bansal D, Acharya A, Skariah S, et al
Human Papillomavirus (HPV) Infection: Molecular Epidemiology, Genotyping, Seroprevalence and Associated Risk Factors among Arab Women in Qatar.
PLoS One. 2017;12:e0169197.
PubMed Text format Abstract available

JAMANN TM, Sood S, Wisser RJ, Holland JB, et al
High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time.
PLoS One. 2017;12:e0168910.
PubMed Text format Abstract available

BOUCHEHAM A, Sommard V, Zehraoui F, Boualem A, et al
IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data.
PLoS One. 2017;12:e0179787.
PubMed Text format Abstract available

PINSONNEAULT JK, Frater JT, Kompa B, Mascarenhas R, et al
Intronic SNP in ESR1 encoding human estrogen receptor alpha is associated with brain ESR1 mRNA isoform expression and behavioral traits.
PLoS One. 2017;12:e0179020.
PubMed Text format Abstract available

MOHR T, Haudek-Prinz V, Slany A, Grillari J, et al
Proteome profiling in IL-1beta and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis.
PLoS One. 2017;12:e0179065.
PubMed Text format Abstract available

PARK KH, Greenwood-Quaintance KE, Uhl JR, Cunningham SA, et al
Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.
PLoS One. 2017;12:e0179003.
PubMed Text format Abstract available

SINGH V, Singh B, Joshi R, Jaju P, et al
Changes in the leaf proteome profile of Withania somnifera (L.) Dunal in response to Alternaria alternata infection.
PLoS One. 2017;12:e0178924.
PubMed Text format Abstract available

ZHOU DX, Zhao Y, Baker JA, Gu Q, et al
The effect of alcohol on the differential expression of cluster of differentiation 14 gene, associated pathways, and genetic network.
PLoS One. 2017;12:e0178689.
PubMed Text format Abstract available

CSOSZ E, Labiscsak P, Kallo G, Markus B, et al
Proteomics investigation of OSCC-specific salivary biomarkers in a Hungarian population highlights the importance of identification of population-tailored biomarkers.
PLoS One. 2017;12:e0177282.
PubMed Text format Abstract available

UGARTE TORRES A, Chu A, Read R, MacDonald J, et al
The epidemiology of Staphylococcus aureus carriage in patients attending inner city sexually transmitted infections and community clinics in Calgary, Canada.
PLoS One. 2017;12:e0178557.
PubMed Text format Abstract available

GUPTA S, Bhar A, Chatterjee M, Ghosh A, et al
Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack.
PLoS One. 2017;12:e0178164.
PubMed Text format Abstract available

TEIXEIRA ADD, Games PD, Katz BB, Tomich JM, et al
Proteomic analysis in the Dufour's gland of Africanized Apis mellifera workers (Hymenoptera: Apidae).
PLoS One. 2017;12:e0177415.
PubMed Text format Abstract available

CAMERON SJS, Lewis KE, Huws SA, Hegarty MJ, et al
A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.
PLoS One. 2017;12:e0177062.
PubMed Text format Abstract available

WANG X, Shojaie A, Zhang Y, Shelley D, et al
Exploratory plasma proteomic analysis in a randomized crossover trial of aspirin among healthy men and women.
PLoS One. 2017;12:e0178444.
PubMed Text format Abstract available

YAMAZAKI T, Hatano Y, Handa T, Kato S, et al
Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.
PLoS One. 2017;12:e0177764.
PubMed Text format Abstract available

EVERS C, Fischer C, Dikow N, Schott S, et al
Familial breast cancer: Genetic counseling over time, including patients expectations and initiators considering the Angelina Jolie effect.
PLoS One. 2017;12:e0177893.
PubMed Text format Abstract available

XIAO W, Chen P, Xiao J, Wang, et al
Comparative transcriptome profiling of a thermal resistant vs. sensitive silkworm strain in response to high temperature under stressful humidity condition.
PLoS One. 2017;12:e0177641.
PubMed Text format Abstract available

HAKIMI O, Ternette N, Murphy R, Kessler BM, et al
A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue.
PLoS One. 2017;12:e0177656.
PubMed Text format Abstract available

WILLEMS H, Jacobs A, Hadiwikarta WW, Venken T, et al
Thermodynamic framework to assess low abundance DNA mutation detection by hybridization.
PLoS One. 2017;12:e0177384.
PubMed Text format Abstract available

BOHME M, Spassov N, Ebner M, Geraads D, et al
Messinian age and savannah environment of the possible hominin Graecopithecus from Europe.
PLoS One. 2017;12:e0177347.
PubMed Text format Abstract available

CHEN YC, Chen KD, Su MC, Chin CH, et al
Genome-wide gene expression array identifies novel genes related to disease severity and excessive daytime sleepiness in patients with obstructive sleep apnea.
PLoS One. 2017;12:e0176575.
PubMed Text format Abstract available

PAVA Z, Noviyanti R, Handayuni I, Trimarsanto H, et al
Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections.
PLoS One. 2017;12:e0177445.
PubMed Text format Abstract available

RAVIV B, Granot G, Chalifa-Caspi V, Grafi G, et al
The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.
PLoS One. 2017;12:e0177537.
PubMed Text format Abstract available

ZHENG Y, Xu S, Liu J, Zhao Y, et al
Genetic diversity and population structure of Chinese natural bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers.
PLoS One. 2017;12:e0177508.
PubMed Text format Abstract available

DIEZ BENAVENTE E, Ward Z, Chan W, Mohareb FR, et al
Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure.
PLoS One. 2017;12:e0177134.
PubMed Text format Abstract available

KHOMTCHOUK BB, Hennessy JR, Wahlestedt C
shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.
PLoS One. 2017;12:e0176334.
PubMed Text format Abstract available

PASCUAL M, Rives B, Schunter C, Macpherson E, et al
Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea.
PLoS One. 2017;12:e0176419.
PubMed Text format Abstract available

MONTANA L, Caniglia R, Galaverni M, Fabbri E, et al
Combining phylogenetic and demographic inferences to assess the origin of the genetic diversity in an isolated wolf population.
PLoS One. 2017;12:e0176560.
PubMed Text format Abstract available

YU H, Zhang Y, Wang Z, Liu L, et al
Diverse range dynamics and dispersal routes of plants on the Tibetan Plateau during the late Quaternary.
PLoS One. 2017;12:e0177101.
PubMed Text format Abstract available

ZHOU Y, Wang S, Zhu H, Li P, et al
Phylogeny and biogeography of South Chinese brown frogs (Ranidae, Anura).
PLoS One. 2017;12:e0175113.
PubMed Text format Abstract available

IBANEZ MI, Cabello P, Luque-Almagro VM, Saez LP, et al
Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).
PLoS One. 2017;12:e0172908.
PubMed Text format Abstract available

TRIVEDI MS, Holger D, Bui AT, Craddock TJA, et al
Short-term sleep deprivation leads to decreased systemic redox metabolites and altered epigenetic status.
PLoS One. 2017;12:e0181978.
PubMed Text format Abstract available

MURPHY SM, Augustine BC, Ulrey WA, Guthrie JM, et al
Consequences of severe habitat fragmentation on density, genetics, and spatial capture-recapture analysis of a small bear population.
PLoS One. 2017;12:e0181849.
PubMed Text format Abstract available

TSAI FJ, Chen SY, Liu YC, Liao HY, et al
The comparison of CHCA solvent compositions for improving LC-MALDI performance and its application to study the impact of aflatoxin B1 on the liver proteome of diabetes mellitus type 1 mice.
PLoS One. 2017;12:e0181423.
PubMed Text format Abstract available

EREZ O, Romero R, Maymon E, Chaemsaithong P, et al
The prediction of late-onset preeclampsia: Results from a longitudinal proteomics study.
PLoS One. 2017;12:e0181468.
PubMed Text format Abstract available

VOLDOIRE E, Brunet F, Naville M, Volff JN, et al
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish.
PLoS One. 2017;12:e0180936.
PubMed Text format Abstract available

OLIVEIRA LR, Gehara MCM, Fraga LD, Lopes F, et al
Ancient female philopatry, asymmetric male gene flow, and synchronous population expansion support the influence of climatic oscillations on the evolution of South American sea lion (Otaria flavescens).
PLoS One. 2017;12:e0179442.
PubMed Text format Abstract available

SINGH A, Sharma AK, Singh NK, Sharma TR, et al
PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.
PLoS One. 2017;12:e0179736.
PubMed Text format Abstract available

HAN Z, Huang H, Gao Y, Huang Q, et al
Functional annotation of Alzheimer's disease associated loci revealed by GWASs.
PLoS One. 2017;12:e0179677.
PubMed Text format Abstract available

DUNCAN C, Jamieson FB, Troudt J, Izzo L, et al
Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion.
PLoS One. 2017;12:e0179996.
PubMed Text format Abstract available

XU K, Niu Q, Zhao H, Du Y, et al
Transcriptomic analysis to uncover genes affecting cold resistance in the Chinese honey bee (Apis cerana cerana).
PLoS One. 2017;12:e0179922.
PubMed Text format Abstract available

MACKIEWICZ P, Moska M, Wierzbicki H, Gagat P, et al
Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group.
PLoS One. 2017;12:e0179760.
PubMed Text format Abstract available

WU YH, Cheng H, Xu L, Jin XB, et al
Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater.
PLoS One. 2017;12:e0179997.
PubMed Text format Abstract available

SUSEK K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, et al
Epigenomic diversification within the genus Lupinus.
PLoS One. 2017;12:e0179821.
PubMed Text format Abstract available

LISTL D, Poschlod P, Reisch C
Phylogeography of a tough rock survivor in European dry grasslands.
PLoS One. 2017;12:e0179961.
PubMed Text format Abstract available

RIZAL G, Karki S, Thakur V, Wanchana S, et al
A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio.
PLoS One. 2017;12:e0179567.
PubMed Text format Abstract available

BWOGI J, Jere KC, Karamagi C, Byarugaba DK, et al
Whole genome analysis of selected human and animal rotaviruses identified in Uganda from 2012 to 2014 reveals complex genome reassortment events between human, bovine, caprine and porcine strains.
PLoS One. 2017;12:e0178855.
PubMed Text format Abstract available

KRUSE A, Fattah-Hosseini S, Saha S, Johnson R, et al
Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.
PLoS One. 2017;12:e0179531.
PubMed Text format Abstract available

RIVERA M, Ramos Y, Rodriguez-Valentin M, Lopez-Acevedo S, et al
Targeting multiple pro-apoptotic signaling pathways with curcumin in prostate cancer cells.
PLoS One. 2017;12:e0179587.
PubMed Text format Abstract available

ADACHI S
Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data.
PLoS One. 2017;12:e0179180.
PubMed Text format Abstract available

PEARSON LJ, Klaharn IY, Thongsawang B, Manuprasert W, et al
Multiple extracellular vesicle types in peritoneal dialysis effluent are prominent and contain known biomarkers.
PLoS One. 2017;12:e0178601.
PubMed Text format Abstract available

LUO S, Cao N, Tang Y, Gu W, et al
Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis.
PLoS One. 2017;12:e0178549.
PubMed Text format Abstract available

GAMEZ-POZO A, Trilla-Fuertes L, Prado-Vazquez G, Chiva C, et al
Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics.
PLoS One. 2017;12:e0178296.
PubMed Text format Abstract available

PANNACCIULLI FG, Maltagliati F, de Guttry C, Achituv Y, et al
Phylogeography on the rocks: The contribution of current and historical factors in shaping the genetic structure of Chthamalus montagui (Crustacea, Cirripedia).
PLoS One. 2017;12:e0178287.
PubMed Text format Abstract available

SAHLBERG BANG C, Demirel I, Kruse R, Persson K, et al
Global gene expression profiling and antibiotic susceptibility after repeated exposure to the carbon monoxide-releasing molecule-2 (CORM-2) in multidrug-resistant ESBL-producing uropathogenic Escherichia coli.
PLoS One. 2017;12:e0178541.
PubMed Text format Abstract available

NYINE M, Uwimana B, Swennen R, Batte M, et al
Trait variation and genetic diversity in a banana genomic selection training population.
PLoS One. 2017;12:e0178734.
PubMed Text format Abstract available

WANG Y, Liu A, Li W, Jiang Y, et al
Comparative proteomic analysis of eggplant (Solanum melongena L.) heterostylous pistil development.
PLoS One. 2017;12:e0179018.
PubMed Text format Abstract available

BARANZELLI MC, Cosacov A, Ferreiro G, Johnson LA, et al
Travelling to the south: Phylogeographic spatial diffusion model in Monttea aphylla (Plantaginaceae), an endemic plant of the Monte Desert.
PLoS One. 2017;12:e0178827.
PubMed Text format Abstract available

LV Y
Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus.
PLoS One. 2017;12:e0178603.
PubMed Text format Abstract available

KIM JK, Bae SE, Lee SJ, Yoon MG, et al
New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae).
PLoS One. 2017;12:e0178001.
PubMed Text format Abstract available

BECKER MG, Walker PL, Pulgar-Vidal NC, Belmonte MF, et al
SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets.
PLoS One. 2017;12:e0178256.
PubMed Text format Abstract available

BELL KL, Hamm CA, Shapiro AM, Nice CC, et al
Sympatric, temporally isolated populations of the pine white butterfly Neophasia menapia, are morphologically and genetically differentiated.
PLoS One. 2017;12:e0176989.
PubMed Text format Abstract available

KEPPLINGER D, Takhar M, Sasaki M, Hollander Z, et al
PGCA: An algorithm to link protein groups created from MS/MS data.
PLoS One. 2017;12:e0177569.
PubMed Text format Abstract available

MEI Y, Bi WL, Greenwald NF, Agar NY, et al
Genomic profile of human meningioma cell lines.
PLoS One. 2017;12:e0178322.
PubMed Text format Abstract available

KEARNEY P, Hunsucker SW, Li XJ, Porter A, et al
An integrated risk predictor for pulmonary nodules.
PLoS One. 2017;12:e0177635.
PubMed Text format Abstract available

ZAZA G, Dalla Gassa A, Felis G, Granata S, et al
Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen.
PLoS One. 2017;12:e0178228.
PubMed Text format Abstract available

PANTOJA Y, Pinheiro K, Veras A, Araujo F, et al
PanWeb: A web interface for pan-genomic analysis.
PLoS One. 2017;12:e0178154.
PubMed Text format Abstract available

LEWANDOWSKA DW, Schreiber PW, Schuurmans MM, Ruehe B, et al
Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection.
PLoS One. 2017;12:e0177340.
PubMed Text format Abstract available

NEUDITSCHKO M, Raadsma HW, Khatkar MS, Jonas E, et al
Identification of key contributors in complex population structures.
PLoS One. 2017;12:e0177638.
PubMed Text format Abstract available

HAJRAH NH, Obaid AY, Atef A, Ramadan AM, et al
Transcriptomic analysis of salt stress responsive genes in Rhazya stricta.
PLoS One. 2017;12:e0177589.
PubMed Text format Abstract available

MONDEJAR R, Perez C, Onaindia A, Martinez N, et al
Molecular basis of targeted therapy in T/NK-cell lymphoma/leukemia: A comprehensive genomic and immunohistochemical analysis of a panel of 33 cell lines.
PLoS One. 2017;12:e0177524.
PubMed Text format Abstract available

ZHANG W, Xu J, Li Y, Zou X, et al
A new two-stage method for revealing missing parts of edges in protein-protein interaction networks.
PLoS One. 2017;12:e0177029.
PubMed Text format Abstract available

VAHIA MN, Yadav N, Ladiwala U, Mathur D, et al
A diffusion based study of population dynamics: Prehistoric migrations into South Asia.
PLoS One. 2017;12:e0176985.
PubMed Text format Abstract available

CASTLEY A, Sawleshwarkar S, Varma R, Herring B, et al
A national study of the molecular epidemiology of HIV-1 in Australia 2005-2012.
PLoS One. 2017;12:e0170601.
PubMed Text format Abstract available

HAEUSERMANN T, Greshake B, Blasimme A, Irdam D, et al
Open sharing of genomic data: Who does it and why?
PLoS One. 2017;12:e0177158.
PubMed Text format Abstract available

TRIFILETTI DM, Sturz VN, Showalter TN, Lobo JM, et al
Towards decision-making using individualized risk estimates for personalized medicine: A systematic review of genomic classifiers of solid tumors.
PLoS One. 2017;12:e0176388.
PubMed Text format Abstract available

DANTAS RCC, Silva RTE, Ferreira ML, Goncalves IR, et al
Molecular epidemiological survey of bacteremia by multidrug resistant Pseudomonas aeruginosa: the relevance of intrinsic resistance mechanisms.
PLoS One. 2017;12:e0176774.
PubMed Text format Abstract available

PLAIRE D, Puaud S, Marsolier-Kergoat MC, Elalouf JM, et al
Comparative analysis of the sensitivity of metagenomic sequencing and PCR to detect a biowarfare simulant (Bacillus atrophaeus) in soil samples.
PLoS One. 2017;12:e0177112.
PubMed Text format Abstract available

KOC I, Caetano-Anolles G
The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.
PLoS One. 2017;12:e0176129.
PubMed Text format Abstract available

PETERSEN TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, et al
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
PLoS One. 2017;12:e0176469.
PubMed Text format Abstract available

ROZENBLUM E, Sotelo-Silveira JR, Kim GY, Zhu JY, et al
Novel near-diploid ovarian cancer cell line derived from a highly aneuploid metastatic ovarian tumor.
PLoS One. 2017;12:e0182610.
PubMed Text format Abstract available

TONG ML, Zhao Q, Liu LL, Zhu XZ, et al
Whole genome sequence of the Treponema pallidum subsp. pallidum strain Amoy: An Asian isolate highly similar to SS14.
PLoS One. 2017;12:e0182768.
PubMed Text format Abstract available

NG PK, Lin SM, Lim PE, Hurtado AQ, et al
Genetic and morphological analyses of Gracilaria firma and G. changii (Gracilariaceae, Rhodophyta), the commercially important agarophytes in western Pacific.
PLoS One. 2017;12:e0182176.
PubMed Text format Abstract available

TANI H, Takeshita JI, Aoki H, Nakamura K, et al
Identification of RNA biomarkers for chemical safety screening in mouse embryonic stem cells using RNA deep sequencing analysis.
PLoS One. 2017;12:e0182032.
PubMed Text format Abstract available

DENG M, Dong Y, Zhao Z, Li Y, et al
Dissecting the proteome dynamics of the salt stress induced changes in the leaf of diploid and autotetraploid Paulownia fortunei.
PLoS One. 2017;12:e0181937.
PubMed Text format Abstract available

BECK SV, Carvalho GR, Barlow A, Ruber L, et al
Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax.
PLoS One. 2017;12:e0179557.
PubMed Text format Abstract available

YAKOVLEVA A, Plieskatt JL, Jensen S, Humeida R, et al
Fit for genomic and proteomic purposes: Sampling the fitness of nucleic acid and protein derivatives from formalin fixed paraffin embedded tissue.
PLoS One. 2017;12:e0181756.
PubMed Text format Abstract available

SORIA-BOIX C, Donat-Torres MP, Urios V
Contacts in the last 90,000 years over the Strait of Gibraltar evidenced by genetic analysis of wild boar (Sus scrofa).
PLoS One. 2017;12:e0181929.
PubMed Text format Abstract available

CHO HR, Kim HS, Park JS, Park SC, et al
Construction and characterization of the Korean whole saliva proteome to determine ethnic differences in human saliva proteome.
PLoS One. 2017;12:e0181765.
PubMed Text format Abstract available

BRUNELLI A, Kampuansai J, Seielstad M, Lomthaisong K, et al
Y chromosomal evidence on the origin of northern Thai people.
PLoS One. 2017;12:e0181935.
PubMed Text format Abstract available

PERSYN E, Karakachoff M, Le Scouarnec S, Le Clezio C, et al
DoEstRare: A statistical test to identify local enrichments in rare genomic variants associated with disease.
PLoS One. 2017;12:e0179364.
PubMed Text format Abstract available

ZHANG H, Yin L, Wang H, Wang G, et al
Genome-wide identification of Hami melon miRNAs with putative roles during fruit development.
PLoS One. 2017;12:e0180600.
PubMed Text format Abstract available

PASCUAL T, Apellaniz-Ruiz M, Pernaut C, Cueto-Felgueroso C, et al
Polymorphisms associated with everolimus pharmacokinetics, toxicity and survival in metastatic breast cancer.
PLoS One. 2017;12:e0180192.
PubMed Text format Abstract available

ABERNATHY J, Brezas A, Snekvik KR, Hardy RW, et al
Integrative functional analyses using rainbow trout selected for tolerance to plant diets reveal nutrigenomic signatures for soy utilization without the concurrence of enteritis.
PLoS One. 2017;12:e0180972.
PubMed Text format Abstract available

GUO P, Zhu B, Xu L, Niu H, et al
Genomic prediction with parallel computing for slaughter traits in Chinese Simmental beef cattle using high-density genotypes.
PLoS One. 2017;12:e0179885.
PubMed Text format Abstract available

ALANAGREH L, Pegg C, Harikumar A, Buchheim M, et al
Assessing intragenomic variation of the internal transcribed spacer two: Adapting the Illumina metagenomics protocol.
PLoS One. 2017;12:e0181491.
PubMed Text format Abstract available

RYU YS, Chandran SP, Kim K, Lee SK, et al
Oligo- and dsDNA-mediated genome editing using a tetA dual selection system in Escherichia coli.
PLoS One. 2017;12:e0181501.
PubMed Text format Abstract available

ALLEVATO M, Bolotin E, Grossman M, Mane-Padros D, et al
Sequence-specific DNA binding by MYC/MAX to low-affinity non-E-box motifs.
PLoS One. 2017;12:e0180147.
PubMed Text format Abstract available

KLYCZEK KK, Bonilla JA, Jacobs-Sera D, Adair TL, et al
Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages.
PLoS One. 2017;12:e0180517.
PubMed Text format Abstract available

DOU L, Jia X, Wei H, Fan S, et al
Global analysis of DNA methylation in young (J1) and senescent (J2) Gossypium hirsutum L. cotyledons by MeDIP-Seq.
PLoS One. 2017;12:e0179141.
PubMed Text format Abstract available

PINNA C, Carta L, Deiana V, Camarda I, et al
Phyto-toponyms of Arbutus unedo L. and their distribution in Sardinia (Italy).
PLoS One. 2017;12:e0181174.
PubMed Text format Abstract available

JAISWAL RK, Kumar P, Sharma A, Mishra DK, et al
Proteomic identification of proteins differentially expressed following overexpression of hTERT (human telomerase reverse transcriptase) in cancer cells.
PLoS One. 2017;12:e0181027.
PubMed Text format Abstract available

WANG H, Ba H, Yang C, Zhang J, et al
Inner and inter population structure construction of Chinese Jiangsu Han population based on Y23 STR system.
PLoS One. 2017;12:e0180921.
PubMed Text format Abstract available

FAN W, Zhong Y, Qin M, Lin B, et al
Differentially expressed microRNAs in diapausing versus HCl-treated Bombyx embryos.
PLoS One. 2017;12:e0180085.
PubMed Text format Abstract available

XU EG, Mager EM, Grosell M, Stieglitz JD, et al
Developmental transcriptomic analyses for mechanistic insights into critical pathways involved in embryogenesis of pelagic mahi-mahi (Coryphaena hippurus).
PLoS One. 2017;12:e0180454.
PubMed Text format Abstract available

ZEREYESUS YA, Dalton TJ
Rates of return to sorghum and millet research investments: A meta-analysis.
PLoS One. 2017;12:e0180414.
PubMed Text format Abstract available

BAI Y, Li X
Late Miocene Pseudolarix amabilis bract-scale complex from Zhejiang, East China.
PLoS One. 2017;12:e0180979.
PubMed Text format Abstract available

WEN F, Wu X, Li T, Jia M, et al
Genome-wide survey of heat shock factors and heat shock protein 70s and their regulatory network under abiotic stresses in Brachypodium distachyon.
PLoS One. 2017;12:e0180352.
PubMed Text format Abstract available

HAN B, Zhang S, Zeng F, Mao J, et al
Nutritional and reproductive signaling revealed by comparative gene expression analysis in Chrysopa pallens (Rambur) at different nutritional statuses.
PLoS One. 2017;12:e0180373.
PubMed Text format Abstract available

EZURA K, Ji-Seong K, Mori K, Suzuki Y, et al
Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum).
PLoS One. 2017;12:e0180003.
PubMed Text format Abstract available

ZEHENDER G, Veo C, Ebranati E, Carta V, et al
Reconstructing the recent West Nile virus lineage 2 epidemic in Europe and Italy using discrete and continuous phylogeography.
PLoS One. 2017;12:e0179679.
PubMed Text format Abstract available

ZHOU X, Xing X, Hou J, Liu J, et al
Quantitative proteomics analysis of proteins involved in alkane uptake comparing the profiling of Pseudomonas aeruginosa SJTD-1 in response to n-octadecane and n-hexadecane.
PLoS One. 2017;12:e0179842.
PubMed Text format Abstract available

BOVO S, Mazzoni G, Ribani A, Utzeri VJ, et al
A viral metagenomic approach on a non-metagenomic experiment: Mining next generation sequencing datasets from pig DNA identified several porcine parvoviruses for a retrospective evaluation of viral infections.
PLoS One. 2017;12:e0179462.
PubMed Text format Abstract available

FENG B, Guo Q, Zheng K, Qin Y, et al
Antennal transcriptome analysis of the piercing moth Oraesia emarginata (Lepidoptera: Noctuidae).
PLoS One. 2017;12:e0179433.
PubMed Text format Abstract available

CUI H, Bansal V, Grunert M, Malecova B, et al
Muscle-relevant genes marked by stable H3K4me2/3 profiles and enriched MyoD binding during myogenic differentiation.
PLoS One. 2017;12:e0179464.
PubMed Text format Abstract available

D'IPPOLITO S, Di Simone N, Orteschi D, Pomponi MG, et al
The chromosome analysis of the miscarriage tissue. Miscarried embryo/fetal crown rump length (CRL) measurement: A practical use.
PLoS One. 2017;12:e0178113.
PubMed Text format Abstract available

CHEN X, Zhang M, Tan J, Huang S, et al
Comparative transcriptome analysis provides insights into molecular mechanisms for parthenocarpic fruit development in eggplant (Solanum melongena L.).
PLoS One. 2017;12:e0179491.
PubMed Text format Abstract available

GOMEZ-GARZON C, Hernandez-Santana A, Dussan J
A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials.
PLoS One. 2017;12:e0179666.
PubMed Text format Abstract available

HU J, Lei L, de Meaux J
Temporal fitness fluctuations in experimental Arabidopsis thaliana populations.
PLoS One. 2017;12:e0178990.
PubMed Text format Abstract available

NEY G, Schul J
Population structure within the one-dimensional range of a coastal plain katydid.
PLoS One. 2017;12:e0179361.
PubMed Text format Abstract available

DE AZEVEDO PEIXOTO L, Moellers TC, Zhang J, Lorenz AJ, et al
Leveraging genomic prediction to scan germplasm collection for crop improvement.
PLoS One. 2017;12:e0179191.
PubMed Text format Abstract available

AGUILAR D, Pinart M, Koppelman GH, Saeys Y, et al
Computational analysis of multimorbidity between asthma, eczema and rhinitis.
PLoS One. 2017;12:e0179125.
PubMed Text format Abstract available

SUN Y, Chen C, Gao J, Abbas MN, et al
Comparative mitochondrial genome analysis of Daphnis nerii and other lepidopteran insects reveals conserved mitochondrial genome organization and phylogenetic relationships.
PLoS One. 2017;12:e0178773.
PubMed Text format Abstract available

TOMAR S, Sethi R, Sundar G, Quah TC, et al
Mutation spectrum of RB1 mutations in retinoblastoma cases from Singapore with implications for genetic management and counselling.
PLoS One. 2017;12:e0178776.
PubMed Text format Abstract available

MORENO PS, Wagner J, Mansfield CS, Stevens M, et al
Characterisation of the canine faecal virome in healthy dogs and dogs with acute diarrhoea using shotgun metagenomics.
PLoS One. 2017;12:e0178433.
PubMed Text format Abstract available

PLANCHON M, Leger T, Spalla O, Huber G, et al
Metabolomic and proteomic investigations of impacts of titanium dioxide nanoparticles on Escherichia coli.
PLoS One. 2017;12:e0178437.
PubMed Text format Abstract available

LIANG D, Leung RKK, Lee SS, Kam KM, et al
Insights into intercontinental spread of Zika virus.
PLoS One. 2017;12:e0176710.
PubMed Text format Abstract available

KIM JH, Kang JH, Jang JE, Choi SK, et al
Population genetic structure of eelgrass (Zostera marina) on the Korean coast: Current status and conservation implications for future management.
PLoS One. 2017;12:e0174105.
PubMed Text format Abstract available

NYALWIDHE JO, Grzesik WJ, Burch TC, Semeraro ML, et al
Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes.
PLoS One. 2017;12:e0183908.
PubMed Text format Abstract available

LIN Y, Zhu J, Wang Y, Li Q, et al
Identification of differentially expressed genes through RNA sequencing in goats (Capra hircus) at different postnatal stages.
PLoS One. 2017;12:e0182602.
PubMed Text format Abstract available

GUSSOW AB, Copeland BR, Dhindsa RS, Wang Q, et al
Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics.
PLoS One. 2017;12:e0181604.
PubMed Text format Abstract available

CONVERSE PE, Kuchta SR, Hauswaldt JS, Roosenburg WM, et al
Turtle soup, Prohibition, and the population genetic structure of Diamondback Terrapins (Malaclemys terrapin).
PLoS One. 2017;12:e0181898.
PubMed Text format Abstract available

JI ZH, Chen J, Gao W, Zhang JY, et al
Cutaneous transcriptome analysis in NIH hairless mice.
PLoS One. 2017;12:e0182463.
PubMed Text format Abstract available

YAN J, Zhang P, Jiao F, Wang Q, et al
Quantitative proteomics in A30P*A53T alpha-synuclein transgenic mice reveals upregulation of Sel1l.
PLoS One. 2017;12:e0182092.
PubMed Text format Abstract available

DREWRY DH, Wells CI, Andrews DM, Angell R, et al
Progress towards a public chemogenomic set for protein kinases and a call for contributions.
PLoS One. 2017;12:e0181585.
PubMed Text format Abstract available

ALVAREZ-SILVA MC, Alvarez-Yela AC, Gomez-Cano F, Zambrano MM, et al
Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.
PLoS One. 2017;12:e0181826.
PubMed Text format Abstract available

COSTEA PI, Munch R, Coelho LP, Paoli L, et al
metaSNV: A tool for metagenomic strain level analysis.
PLoS One. 2017;12:e0182392.
PubMed Text format Abstract available

LAVOUE S, Bertrand JAM, Wang HY, Chen WJ, et al
Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific.
PLoS One. 2017;12:e0181329.
PubMed Text format Abstract available

FELTEN A, Guillier L, Radomski N, Mistou MY, et al
Genome Target Evaluator (GTEvaluator): A workflow exploiting genome dataset to measure the sensitivity and specificity of genetic markers.
PLoS One. 2017;12:e0182082.
PubMed Text format Abstract available

PU C, Li H, Zhu A, Chen Y, et al
Phylogeography in Nassarius mud snails: Complex patterns in congeneric species.
PLoS One. 2017;12:e0180728.
PubMed Text format Abstract available

IANGRAI B, Pattanayak A, Khongwir DEA, Pale G, et al
Development and characterization of a new set of genomic microsatellite markers in rice bean (Vigna umbellata (Thunb.) Ohwi and Ohashi) and their utilization in genetic diversity analysis of collections from North East India.
PLoS One. 2017;12:e0179801.
PubMed Text format Abstract available

CALAZANS C SH, Walters LJ, Fernandes FC, Ferreira CEL, et al
Genetic structure provides insights into the geographic origins and temporal change in the invasive charru mussel (Sururu) in the southeastern United States.
PLoS One. 2017;12:e0180619.
PubMed Text format Abstract available

WILLIAMS KE, Huyvaert KP, Piaggio AJ
Clearing muddied waters: Capture of environmental DNA from turbid waters.
PLoS One. 2017;12:e0179282.
PubMed Text format Abstract available

WEI WQ, Bastarache LA, Carroll RJ, Marlo JE, et al
Evaluating phecodes, clinical classification software, and ICD-9-CM codes for phenome-wide association studies in the electronic health record.
PLoS One. 2017;12:e0175508.
PubMed Text format Abstract available

BALAZIK MT, Farrae DJ, Darden TL, Garman GC, et al
Genetic differentiation of spring-spawning and fall-spawning male Atlantic sturgeon in the James River, Virginia.
PLoS One. 2017;12:e0179661.
PubMed Text format Abstract available

CROUZET M, Claverol S, Lomenech AM, Le Senechal C, et al
Pseudomonas aeruginosa cells attached to a surface display a typical proteome early as 20 minutes of incubation.
PLoS One. 2017;12:e0180341.
PubMed Text format Abstract available

REISBERG S, Iljasenko T, Lall K, Fischer K, et al
Comparing distributions of polygenic risk scores of type 2 diabetes and coronary heart disease within different populations.
PLoS One. 2017;12:e0179238.
PubMed Text format Abstract available

BOGACKA I, Paukszto L, Jastrzebski JP, Czerwinska J, et al
Seasonal differences in the testicular transcriptome profile of free-living European beavers (Castor fiber L.) determined by the RNA-Seq method.
PLoS One. 2017;12:e0180323.
PubMed Text format Abstract available

PALMA RE, Gutierrez-Tapia P, Gonzalez JF, Boric-Bargetto D, et al
Mountaintops phylogeography: A case study using small mammals from the Andes and the coast of central Chile.
PLoS One. 2017;12:e0180231.
PubMed Text format Abstract available

OSEI SEKYERE J, Amoako DG
Genomic and phenotypic characterisation of fluoroquinolone resistance mechanisms in Enterobacteriaceae in Durban, South Africa.
PLoS One. 2017;12:e0178888.
PubMed Text format Abstract available

MCMAHAN CD, Ginger L, Cage M, David KT, et al
Pleistocene to holocene expansion of the black-belt cichlid in Central America, Vieja maculicauda (Teleostei: Cichlidae).
PLoS One. 2017;12:e0178439.
PubMed Text format Abstract available

PENG T, Ma L, Feng X, Tao J, et al
Genomic and transcriptomic analyses reveal adaptation mechanisms of an Acidithiobacillus ferrivorans strain YL15 to alpine acid mine drainage.
PLoS One. 2017;12:e0178008.
PubMed Text format Abstract available

LIN Q, Liang JR, Huang QQ, Luo CS, et al
Differential cellular responses associated with oxidative stress and cell fate decision under nitrate and phosphate limitations in Thalassiosira pseudonana: Comparative proteomics.
PLoS One. 2017;12:e0184849.
PubMed Text format Abstract available

PAN L, Yang Z, Wang J, Wang P, et al
Comparative proteomic analyses reveal the proteome response to short-term drought in Italian ryegrass (Lolium multiflorum).
PLoS One. 2017;12:e0184289.
PubMed Text format Abstract available

ROY J, Wycislo KL, Pondenis H, Fan TM, et al
Comparative proteomic investigation of metastatic and non-metastatic osteosarcoma cells of human and canine origin.
PLoS One. 2017;12:e0183930.
PubMed Text format Abstract available

MARTINA F, Beccuti M, Balbo G, Cordero F, et al
Peculiar Genes Selection: A new features selection method to improve classification performances in imbalanced data sets.
PLoS One. 2017;12:e0177475.
PubMed Text format Abstract available

ASAF S, Khan AL, Aaqil Khan M, Muhammad Imran Q, et al
Comparative analysis of complete plastid genomes from wild soybean (Glycine soja) and nine other Glycine species.
PLoS One. 2017;12:e0182281.
PubMed Text format Abstract available

ALEXANDER KL, Katz J, Elson CO
CBirTox is a selective antigen-specific agonist of the Treg-IgA-microbiota homeostatic pathway.
PLoS One. 2017;12:e0181866.
PubMed Text format Abstract available

POTRIQUET J, Laohaviroj M, Bethony JM, Mulvenna J, et al
A modified FASP protocol for high-throughput preparation of protein samples for mass spectrometry.
PLoS One. 2017;12:e0175967.
PubMed Text format Abstract available

LONG Z, Duan G, Li H, Yi T, et al
Ubiquinol-cytochrome c reductase core protein 1 may be involved in delayed cardioprotection from preconditioning induced by diazoxide.
PLoS One. 2017;12:e0181903.
PubMed Text format Abstract available

MAKONDI PT, Chu CM, Wei PL, Chang YJ, et al
Prediction of novel target genes and pathways involved in irinotecan-resistant colorectal cancer.
PLoS One. 2017;12:e0180616.
PubMed Text format Abstract available

MUNUNG NS, Mayosi BM, de Vries J
Equity in international health research collaborations in Africa: Perceptions and expectations of African researchers.
PLoS One. 2017;12:e0186237.
PubMed Text format Abstract available

MENA M, Lloveras B, Tous S, Bogers J, et al
Development and validation of a protocol for optimizing the use of paraffin blocks in molecular epidemiological studies: The example from the HPV-AHEAD study.
PLoS One. 2017;12:e0184520.
PubMed Text format Abstract available

YANG EH, Rode J, Howlader MA, Eckermann M, et al
Galectin-3 alters the lateral mobility and clustering of beta1-integrin receptors.
PLoS One. 2017;12:e0184378.
PubMed Text format Abstract available

MARQUEZ-RODAS I, Pollan M, Escudero MJ, Ruiz A, et al
Frequency of breast cancer with hereditary risk features in Spain: Analysis from GEICAM "El Alamo III" retrospective study.
PLoS One. 2017;12:e0184181.
PubMed Text format Abstract available

RUDEBUSCH J, Benkner A, Poesch A, Dorr M, et al
Dynamic adaptation of myocardial proteome during heart failure development.
PLoS One. 2017;12:e0185915.
PubMed Text format Abstract available

PILLING LC, Atkins JL, Duff MO, Beaumont RN, et al
Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.
PLoS One. 2017;12:e0185083.
PubMed Text format Abstract available

MORAN EV, Reid A, Levine JM
Population genetics and adaptation to climate along elevation gradients in invasive Solidago canadensis.
PLoS One. 2017;12:e0185539.
PubMed Text format Abstract available

TONUSSI RL, Silva RMO, Magalhaes AFB, Espigolan R, et al
Application of single step genomic BLUP under different uncertain paternity scenarios using simulated data.
PLoS One. 2017;12:e0181752.
PubMed Text format Abstract available

TRAPANESE M, Buglione M, Maselli V, Petrelli S, et al
The first transcriptome of Italian wall lizard, a new tool to infer about the Island Syndrome.
PLoS One. 2017;12:e0185227.
PubMed Text format Abstract available

WELSH EA, Stewart PA, Kuenzi BM, Eschrich JA, et al
Escape Excel: A tool for preventing gene symbol and accession conversion errors.
PLoS One. 2017;12:e0185207.
PubMed Text format Abstract available

LOPES CARDOSO D, Sharpe C
Relating protein functional diversity to cell type number identifies genes that determine dynamic aspects of chromatin organisation as potential contributors to organismal complexity.
PLoS One. 2017;12:e0185409.
PubMed Text format Abstract available

LABIRAN C, Rowen D, Clarke IN, Marsh P, et al
Detailed molecular epidemiology of Chlamydia trachomatis in the population of Southampton attending the genitourinary medicine clinic in 2012-13 reveals the presence of long established genotypes and transitory sexual networks.
PLoS One. 2017;12:e0185059.
PubMed Text format Abstract available

JOHNSTON CD, Skeete CA, Fomenkov A, Roberts RJ, et al
Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia.
PLoS One. 2017;12:e0185234.
PubMed Text format Abstract available

SAGHAPOUR E, Kermani S, Sehhati M
A novel feature ranking method for prediction of cancer stages using proteomics data.
PLoS One. 2017;12:e0184203.
PubMed Text format Abstract available

WILKE ABB, Wilk-da-Silva R, Marrelli MT
Microgeographic population structuring of Aedes aegypti (Diptera: Culicidae).
PLoS One. 2017;12:e0185150.
PubMed Text format Abstract available

UNGARO A, Pech N, Martin JF, McCairns RJS, et al
Challenges and advances for transcriptome assembly in non-model species.
PLoS One. 2017;12:e0185020.
PubMed Text format Abstract available

YI L, Hu N, Yin J, Sun J, et al
Up-regulation of calreticulin in mouse liver tissues after long-term irradiation with low-dose-rate gamma rays.
PLoS One. 2017;12:e0182671.
PubMed Text format Abstract available

TIBUAKUU M, Kamimura D, Kianoush S, DeFilippis AP, et al
The association between cigarette smoking and inflammation: The Genetic Epidemiology Network of Arteriopathy (GENOA) study.
PLoS One. 2017;12:e0184914.
PubMed Text format Abstract available

YANG Z, Zhang Y, Jiang Y, Zhu F, et al
Transcriptional responses in the hepatopancreas of Eriocheir sinensis exposed to deltamethrin.
PLoS One. 2017;12:e0184581.
PubMed Text format Abstract available

HRANILOVIC A, Bely M, Masneuf-Pomarede I, Jiranek V, et al
The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems.
PLoS One. 2017;12:e0184652.
PubMed Text format Abstract available

ELDERMAN M, Sovran B, Hugenholtz F, Graversen K, et al
The effect of age on the intestinal mucus thickness, microbiota composition and immunity in relation to sex in mice.
PLoS One. 2017;12:e0184274.
PubMed Text format Abstract available

BELAIR DG, Wolf CJ, Wood C, Ren H, et al
Engineering human cell spheroids to model embryonic tissue fusion in vitro.
PLoS One. 2017;12:e0184155.
PubMed Text format Abstract available

AJORLOO F, Vaezi M, Saadat A, Safaee SR, et al
A systems medicine approach for finding target proteins affecting treatment outcomes in patients with non-Hodgkin lymphoma.
PLoS One. 2017;12:e0183969.
PubMed Text format Abstract available

MEZZASALMA V, Sandionigi A, Bruni I, Bruno A, et al
Grape microbiome as a reliable and persistent signature of field origin and environmental conditions in Cannonau wine production.
PLoS One. 2017;12:e0184615.
PubMed Text format Abstract available

BLAGODATSKIKH KA, Kramarov VM, Barsova EV, Garkovenko AV, et al
Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA.
PLoS One. 2017;12:e0184507.
PubMed Text format Abstract available

JENKINS TP, Rathnayaka Y, Perera PK, Peachey LE, et al
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition.
PLoS One. 2017;12:e0184719.
PubMed Text format Abstract available

CIESLAK M, Wahli T, Diserens N, Haenen OLM, et al
Phylogeny of the infectious hematopoietic necrosis virus in European aquaculture.
PLoS One. 2017;12:e0184490.
PubMed Text format Abstract available

POKORN T, Radisek S, Javornik B, Stajner N, et al
Development of hop transcriptome to support research into host-viroid interactions.
PLoS One. 2017;12:e0184528.
PubMed Text format Abstract available

FESTA S, Coppotelli BM, Madueno L, Loviso CL, et al
Assigning ecological roles to the populations belonging to a phenanthrene-degrading bacterial consortium using omic approaches.
PLoS One. 2017;12:e0184505.
PubMed Text format Abstract available

ZHU Q, Liao BY, Li P, Li JC, et al
Phylogeographic pattern suggests a general northeastward dispersal in the distribution of Machilus pauhoi in South China.
PLoS One. 2017;12:e0184456.
PubMed Text format Abstract available

GENG P, Tian S, Yuan Z, Hu X, et al
Identification and genomic comparison of temperate bacteriophages derived from emetic Bacillus cereus.
PLoS One. 2017;12:e0184572.
PubMed Text format Abstract available

ROODT D, Lohaus R, Sterck L, Swanepoel RL, et al
Evidence for an ancient whole genome duplication in the cycad lineage.
PLoS One. 2017;12:e0184454.
PubMed Text format Abstract available

LORANT A, Pedersen S, Holst I, Hufford MB, et al
The potential role of genetic assimilation during maize domestication.
PLoS One. 2017;12:e0184202.
PubMed Text format Abstract available

FERNANDEZ-PEREZ J, Nanton A, Ruiz-Ruano FJ, Camacho JPM, et al
First complete female mitochondrial genome in four bivalve species genus Donax and their phylogenetic relationships within the Veneroida order.
PLoS One. 2017;12:e0184464.
PubMed Text format Abstract available

WANG X, Wen X, Zhou J, Qi Y, et al
MicroRNA-223 and microRNA-21 in peripheral blood B cells associated with progression of primary biliary cholangitis patients.
PLoS One. 2017;12:e0184292.
PubMed Text format Abstract available

JEONG S, Kim J, Park W, Jeon H, et al
SEXCMD: Development and validation of sex marker sequences for whole-exome/genome and RNA sequencing.
PLoS One. 2017;12:e0184087.
PubMed Text format Abstract available

HUANG QF, Trenson S, Zhang ZY, Yang WY, et al
Urinary Proteomics in Predicting Heart Transplantation Outcomes (uPROPHET)-Rationale and database description.
PLoS One. 2017;12:e0184443.
PubMed Text format Abstract available

BESTER-VAN DER MERWE AE, Bitalo D, Cuevas JM, Ovenden J, et al
Population genetics of Southern Hemisphere tope shark (Galeorhinus galeus): Intercontinental divergence and constrained gene flow at different geographical scales.
PLoS One. 2017;12:e0184481.
PubMed Text format Abstract available

SINGH RP, Runthala A, Khan S, Jha PN, et al
Quantitative proteomics analysis reveals the tolerance of wheat to salt stress in response to Enterobacter cloacae SBP-8.
PLoS One. 2017;12:e0183513.
PubMed Text format Abstract available

MUKHERJEE S, Barash D, Sengupta S
Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria.
PLoS One. 2017;12:e0184314.
PubMed Text format Abstract available

CHEN L, Zhang YH, Wang S, Zhang Y, et al
Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways.
PLoS One. 2017;12:e0184129.
PubMed Text format Abstract available

MULLER M, Seifert S, Lubbe T, Leuschner C, et al
De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech.
PLoS One. 2017;12:e0184167.
PubMed Text format Abstract available

PARK JS, Jung SW, Ki JS, Guo R, et al
Transfer of the small diatoms Thalassiosira proschkinae and T. spinulata to the genus Minidiscus and their taxonomic re-description.
PLoS One. 2017;12:e0181980.
PubMed Text format Abstract available

MUSACCHIA F, Vasilev F, Borra M, Biffali E, et al
De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus.
PLoS One. 2017;12:e0184090.
PubMed Text format Abstract available

WANG X, Li W, Zhang Y, Feng Y, et al
Chronic obstructive pulmonary disease candidate gene prioritization based on metabolic networks and functional information.
PLoS One. 2017;12:e0184299.
PubMed Text format Abstract available

ZHOU R, Lin X, Li DY, Wang XF, et al
Identification of novel genetic loci for osteoporosis and/or rheumatoid arthritis using cFDR approach.
PLoS One. 2017;12:e0183842.
PubMed Text format Abstract available

ROSA JD, Weber GG, Cardoso R, Gorski F, et al
Variability and population genetic structure in Achyrocline flaccida (Weinm.) DC., a species with high value in folk medicine in South America.
PLoS One. 2017;12:e0183533.
PubMed Text format Abstract available

GUO Y, Wang Z, Guan X, Hu Z, et al
Proteomic analysis of Potentilla fruticosa L. leaves by iTRAQ reveals responses to heat stress.
PLoS One. 2017;12:e0182917.
PubMed Text format Abstract available

TOURNEBIZE R, Manel S, Vigouroux Y, Munoz F, et al
Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda.
PLoS One. 2017;12:e0183412.
PubMed Text format Abstract available

JIA X, Xi BD, Li MX, Yang Y, et al
Metaproteomics analysis of the functional insights into microbial communities of combined hydrogen and methane production by anaerobic fermentation from reed straw.
PLoS One. 2017;12:e0183158.
PubMed Text format Abstract available

MURRAY-DICKSON G, Ghazali M, Ogden R, Brown R, et al
Phylogeography of the reticulated python (Malayopython reticulatus ssp.): Conservation implications for the worlds' most traded snake species.
PLoS One. 2017;12:e0182049.
PubMed Text format Abstract available

ABECIA L, Jimenez E, Martinez-Fernandez G, Martin-Garcia AI, et al
Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats.
PLoS One. 2017;12:e0182235.
PubMed Text format Abstract available

WANG X, Kong L, Chen J, Matsukuma A, et al
Phylogeography of bivalve Meretrix petechialis in the Northwestern Pacific indicated by mitochondrial and nuclear DNA data.
PLoS One. 2017;12:e0183221.
PubMed Text format Abstract available

JINGTING S, Qin X, Yanju S, Ming Z, et al
Oxidative and glycolytic skeletal muscles show marked differences in gene expression profile in Chinese Qingyuan partridge chickens.
PLoS One. 2017;12:e0183118.
PubMed Text format Abstract available

RUAN J, Cheng J, Zhang T, Jiang H, et al
Mitochondrial genome evolution in the Saccharomyces sensu stricto complex.
PLoS One. 2017;12:e0183035.
PubMed Text format Abstract available

HE T, Zhang H, Wang J, Wu S, et al
Proteomic comparison by iTRAQ combined with mass spectrometry of egg white proteins in laying hens (Gallus gallus) fed with soybean meal and cottonseed meal.
PLoS One. 2017;12:e0182886.
PubMed Text format Abstract available

LE TM, Le QVC, Truong DM, Lee HJ, et al
beta2-microglobulin gene duplication in cetartiodactyla remains intact only in pigs and possibly confers selective advantage to the species.
PLoS One. 2017;12:e0182322.
PubMed Text format Abstract available

CHEN H, Peng S, Dai L, Zou Q, et al
Oral microbial community assembly under the influence of periodontitis.
PLoS One. 2017;12:e0182259.
PubMed Text format Abstract available

MASUOKA H, Shimada K, Kiyosue-Yasuda T, Kiyosue M, et al
Transition of the intestinal microbiota of cats with age.
PLoS One. 2017;12:e0181739.
PubMed Text format Abstract available

SANTAMANS AC, Boluda R, Picazo A, Gil C, et al
Soil features in rookeries of Antarctic penguins reveal sea to land biotransport of chemical pollutants.
PLoS One. 2017;12:e0181901.
PubMed Text format Abstract available

MATSUYAMA T, Yasuike M, Fujiwara A, Nakamura Y, et al
A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis.
PLoS One. 2017;12:e0182280.
PubMed Text format Abstract available

LAKIOTAKI K, Kanterakis A, Kartsaki E, Katsila T, et al
Exploring public genomics data for population pharmacogenomics.
PLoS One. 2017;12:e0182138.
PubMed Text format Abstract available

HARRISON SE, Harvey MS, Cooper SJB, Austin AD, et al
Across the Indian Ocean: A remarkable example of trans-oceanic dispersal in an austral mygalomorph spider.
PLoS One. 2017;12:e0180139.
PubMed Text format Abstract available

SIMO-RIUDALBAS M, Metallinou M, de Pous P, Els J, et al
Cryptic diversity in Ptyodactylus (Reptilia: Gekkonidae) from the northern Hajar Mountains of Oman and the United Arab Emirates uncovered by an integrative taxonomic approach.
PLoS One. 2017;12:e0180397.
PubMed Text format Abstract available

HAMADA N
Ionizing radiation response of primary normal human lens epithelial cells.
PLoS One. 2017;12:e0181530.
PubMed Text format Abstract available

GIOUTLAKIS A, Klapa MI, Moschonas NK
PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology.
PLoS One. 2017;12:e0186039.
PubMed Text format Abstract available

ARADHYA M, Velasco D, Ibrahimov Z, Toktoraliev B, et al
Genetic and ecological insights into glacial refugia of walnut (Juglans regia L.).
PLoS One. 2017;12:e0185974.
PubMed Text format Abstract available

WANG D, Li L, Wu G, Vasseur L, et al
De novo transcriptome sequencing of Isaria cateniannulata and comparative analysis of gene expression in response to heat and cold stresses.
PLoS One. 2017;12:e0186040.
PubMed Text format Abstract available

AKPAKA PE, Kissoon S, Jayaratne P, Wilson C, et al
Genetic characteristics and molecular epidemiology of vancomycin-resistant Enterococci isolates from Caribbean countries.
PLoS One. 2017;12:e0185920.
PubMed Text format Abstract available

CARLINI DB, Fong DW
The transcriptomes of cave and surface populations of Gammarus minus (Crustacea: Amphipoda) provide evidence for positive selection on cave downregulated transcripts.
PLoS One. 2017;12:e0186173.
PubMed Text format Abstract available

REINHOLD D, Morrow JD, Jacobson S, Hu J, et al
Meta-analysis of peripheral blood gene expression modules for COPD phenotypes.
PLoS One. 2017;12:e0185682.
PubMed Text format Abstract available

AHMAD J, Bashir H, Bagheri R, Baig A, et al
Drought and salinity induced changes in ecophysiology and proteomic profile of Parthenium hysterophorus.
PLoS One. 2017;12:e0185118.
PubMed Text format Abstract available

BRISSE HJ, Blanc T, Schleiermacher G, Mosseri V, et al
Radiogenomics of neuroblastomas: Relationships between imaging phenotypes, tumor genomic profile and survival.
PLoS One. 2017;12:e0185190.
PubMed Text format Abstract available

LUAN X, Cao Z, Xing Z, Liu M, et al
Comparative proteomic analysis of pituitary glands from Huoyan geese between pre-laying and laying periods using an iTRAQ-based approach.
PLoS One. 2017;12:e0185253.
PubMed Text format Abstract available

GLUCK JM, Herren AW, Yechikov S, Kao HKJ, et al
Biochemical and biomechanical properties of the pacemaking sinoatrial node extracellular matrix are distinct from contractile left ventricular matrix.
PLoS One. 2017;12:e0185125.
PubMed Text format Abstract available

MOUSSA TAA, Al-Zahrani HS, Almaghrabi OA, Abdelmoneim TS, et al
Comparative metagenomics approaches to characterize the soil fungal communities of western coastal region, Saudi Arabia.
PLoS One. 2017;12:e0185096.
PubMed Text format Abstract available

BOUVIER M, Durrieu S, Gosselin F, Herpigny B, et al
Use of airborne lidar data to improve plant species richness and diversity monitoring in lowland and mountain forests.
PLoS One. 2017;12:e0184524.
PubMed Text format Abstract available

JOHANSSON F, Halvarsson P, Mikolajewski DJ, Hoglund J, et al
Phylogeography and larval spine length of the dragonfly Leucorhinia dubia in Europe.
PLoS One. 2017;12:e0184596.
PubMed Text format Abstract available

LI Y, Khalafalla AI, Paden CR, Yusof MF, et al
Identification of diverse viruses in upper respiratory samples in dromedary camels from United Arab Emirates.
PLoS One. 2017;12:e0184718.
PubMed Text format Abstract available

MEHANNA P, Gagne V, Lajoie M, Spinella JF, et al
Characterization of the microDNA through the response to chemotherapeutics in lymphoblastoid cell lines.
PLoS One. 2017;12:e0184365.
PubMed Text format Abstract available

MECH LD, Asa CS, Callahan M, Christensen BW, et al
Studies of wolf x coyote hybridization via artificial insemination.
PLoS One. 2017;12:e0184342.
PubMed Text format Abstract available

PARK I, Kim WJ, Yang S, Yeo SM, et al
The complete chloroplast genome sequence of Aconitum coreanum and Aconitum carmichaelii and comparative analysis with other Aconitum species.
PLoS One. 2017;12:e0184257.
PubMed Text format Abstract available

HARDY JJ, Mooney SR, Pearson AN, McGuire D, et al
Assessing the accuracy of blood RNA profiles to identify patients with post-concussion syndrome: A pilot study in a military patient population.
PLoS One. 2017;12:e0183113.
PubMed Text format Abstract available

HILMARSSON HS, Hytonen T, Isobe S, Goransson M, et al
Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers.
PLoS One. 2017;12:e0183384.
PubMed Text format Abstract available

MERKLEY ED, Sego LH, Lin A, Leiser OP, et al
Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.
PLoS One. 2017;12:e0183478.
PubMed Text format Abstract available

YWASAKI LIMA J, Machado FB, Farro APC, Barbosa LA, et al
Population genetic structure of Guiana dolphin (Sotalia guianensis) from the southwestern Atlantic coast of Brazil.
PLoS One. 2017;12:e0183645.
PubMed Text format Abstract available

MARKUS B, Szabo K, Pfliegler WP, Petrenyi K, et al
Proteomic analysis of protein phosphatase Z1 from Candida albicans.
PLoS One. 2017;12:e0183176.
PubMed Text format Abstract available

CANTRES-ROSARIO YM, Acevedo-Mariani FM, Perez-Laspiur J, Haskins WE, et al
Microwave & magnetic proteomics of macrophages from patients with HIV-associated cognitive impairment.
PLoS One. 2017;12:e0181779.
PubMed Text format Abstract available

BARBIERI R, Mekni R, Levasseur A, Chabriere E, et al
Paleoproteomics of the Dental Pulp: The plague paradigm.
PLoS One. 2017;12:e0180552.
PubMed Text format Abstract available

MANTOOTH K, Hadziabdic D, Boggess S, Windham M, et al
Confirmation of independent introductions of an exotic plant pathogen of Cornus species, Discula destructiva, on the east and west coasts of North America.
PLoS One. 2017;12:e0180345.
PubMed Text format Abstract available

CHEN Q, Pei D, Li J, Jing C, et al
The antenna transcriptome changes in mosquito Anopheles sinensis, pre- and post- blood meal.
PLoS One. 2017;12:e0181399.
PubMed Text format Abstract available

HIRAI J, Nagai S, Hidaka K
Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454.
PLoS One. 2017;12:e0181452.
PubMed Text format Abstract available

GAO L, He C, Bao X, Tian M, et al
Transcriptome analysis of the sea cucumber (Apostichopus japonicus) with variation in individual growth.
PLoS One. 2017;12:e0181471.
PubMed Text format Abstract available

CHATURVEDI S, Rao ALN
Riboproteomics: A versatile approach for the identification of host protein interaction network in plant pathogenic noncoding RNAs.
PLoS One. 2017;12:e0186703.
PubMed Text format Abstract available

THEOFANOPOULOU C, Gastaldon S, O'Rourke T, Samuels BD, et al
Self-domestication in Homo sapiens: Insights from comparative genomics.
PLoS One. 2017;12:e0185306.
PubMed Text format Abstract available

MAQUEDA M, Roca E, Brotons D, Soria JM, et al
Affected pathways and transcriptional regulators in gene expression response to an ultra-marathon trail: Global and independent activity approaches.
PLoS One. 2017;12:e0180322.
PubMed Text format Abstract available

PEREZ-ZAMORANO B, Rosas-Madrigal S, Lozano OAM, Castillo Mendez M, et al
Identification of cis-regulatory sequences reveals potential participation of lola and Deaf1 transcription factors in Anopheles gambiae innate immune response.
PLoS One. 2017;12:e0186435.
PubMed Text format Abstract available

TOMIDA J, Morita Y, Shibayama K, Kikuchi K, et al
Diversity and microevolution of CRISPR loci in Helicobacter cinaedi.
PLoS One. 2017;12:e0186241.
PubMed Text format Abstract available

BORTHS MR, Stevens NJ
The first hyaenodont from the late Oligocene Nsungwe Formation of Tanzania: Paleoecological insights into the Paleogene-Neogene carnivore transition.
PLoS One. 2017;12:e0185301.
PubMed Text format Abstract available

BROSSAS JY, Gulin JEN, Bisio MMC, Chapelle M, et al
Secretome analysis of Trypanosoma cruzi by proteomics studies.
PLoS One. 2017;12:e0185504.
PubMed Text format Abstract available

KHOSHNOOD B, Dacklin I, Grabbe C
A proteomics approach to identify targets of the ubiquitin-like molecule Urm1 in Drosophila melanogaster.
PLoS One. 2017;12:e0185611.
PubMed Text format Abstract available

DESVARS-LARRIVE A, Pascal M, Gasqui P, Cosson JF, et al
Population genetics, community of parasites, and resistance to rodenticides in an urban brown rat (Rattus norvegicus) population.
PLoS One. 2017;12:e0184015.
PubMed Text format Abstract available

TIMOFEEV V, Bakhteeva I, Titareva G, Kopylov P, et al
Russian isolates enlarge the known geographic diversity of Francisella tularensis subsp. mediasiatica.
PLoS One. 2017;12:e0183714.
PubMed Text format Abstract available

HAGGLUND S, Blodorn K, Naslund K, Vargmar K, et al
Proteome analysis of bronchoalveolar lavage from calves infected with bovine respiratory syncytial virus-Insights in pathogenesis and perspectives for new treatments.
PLoS One. 2017;12:e0186594.
PubMed Text format Abstract available

SIKDAR S, Datta S, Datta S
EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments.
PLoS One. 2017;12:e0187287.
PubMed Text format Abstract available

CAO YY, Bian XC, Chen MX, Xia LR, et al
iTRAQ-based quantitative proteomic analysis in vernalization-treated faba bean (Vicia faba L.).
PLoS One. 2017;12:e0187436.
PubMed Text format Abstract available

AL HARIRI M, Elmedawar M, Zhu R, Jaffa MA, et al
Proteome profiling in the aorta and kidney of type 1 diabetic rats.
PLoS One. 2017;12:e0187752.
PubMed Text format Abstract available

LENIHAN JA, Saha O, Young PW
Proteomic analysis reveals novel ligands and substrates for LNX1 E3 ubiquitin ligase.
PLoS One. 2017;12:e0187352.
PubMed Text format Abstract available

YANG Z, Jia M, Liu G, Hao H, et al
Genomic sequencing identifies a few mutations driving the independent origin of primary liver tumors in a chronic hepatitis murine model.
PLoS One. 2017;12:e0187551.
PubMed Text format Abstract available

DRAPER JP, Waits LP, Adams JR, Seals CL, et al
Genetic health and population monitoring of two small black bear (Ursus americanus) populations in Alabama, with a regional perspective of genetic diversity and exchange.
PLoS One. 2017;12:e0186701.
PubMed Text format Abstract available

SALMIER A, Tirera S, de Thoisy B, Franc A, et al
Virome analysis of two sympatric bat species (Desmodus rotundus and Molossus molossus) in French Guiana.
PLoS One. 2017;12:e0186943.
PubMed Text format Abstract available

WAN TW, Higuchi W, Khokhlova OE, Hung WC, et al
Genomic comparison between Staphylococcus aureus GN strains clinically isolated from a familial infection case: IS1272 transposition through a novel inverted repeat-replacing mechanism.
PLoS One. 2017;12:e0187288.
PubMed Text format Abstract available

FEOKTISTOVA NY, Meschersky IG, Bogomolov PL, Sayan AS, et al
Phylogeographic structure of the Common hamster (Cricetus cricetus L.): Late Pleistocene connections between Caucasus and Western European populations.
PLoS One. 2017;12:e0187527.
PubMed Text format Abstract available

PEREZ-PARRA S, Chueca N, Alvarez M, Pasquau J, et al
High prevalence and diversity of HIV-1 non-B genetic forms due to immigration in southern Spain: A phylogeographic approach.
PLoS One. 2017;12:e0186928.
PubMed Text format Abstract available

XIE DF, Li MJ, Tan JB, Price M, et al
Phylogeography and genetic effects of habitat fragmentation on endemic Urophysa (Ranunculaceae) in Yungui Plateau and adjacent regions.
PLoS One. 2017;12:e0186378.
PubMed Text format Abstract available

LAVINIA PD, Nunez Bustos EO, Kopuchian C, Lijtmaer DA, et al
Barcoding the butterflies of southern South America: Species delimitation efficacy, cryptic diversity and geographic patterns of divergence.
PLoS One. 2017;12:e0186845.
PubMed Text format Abstract available

EIDSAA M, Stubbs L, Almaas E
Comparative analysis of weighted gene co-expression networks in human and mouse.
PLoS One. 2017;12:e0187611.
PubMed Text format Abstract available

BIEN SA, Auer PL, Harrison TA, Qu C, et al
Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data.
PLoS One. 2017;12:e0186518.
PubMed Text format Abstract available

VETRIVEL I, Mahajan S, Tyagi M, Hoffmann L, et al
Knowledge-based prediction of protein backbone conformation using a structural alphabet.
PLoS One. 2017;12:e0186215.
PubMed Text format Abstract available

TALBOT SL, Sage GK, Sonsthagen SA, Gravley MC, et al
Intraspecific evolutionary relationships among peregrine falcons in western North American high latitudes.
PLoS One. 2017;12:e0188185.
PubMed Text format Abstract available

SEBASTIAN A, Hum NR, Murugesh DK, Hatsell S, et al
Wnt co-receptors Lrp5 and Lrp6 differentially mediate Wnt3a signaling in osteoblasts.
PLoS One. 2017;12:e0188264.
PubMed Text format Abstract available

WALLQVIST A, Wang H, Zavaljevski N, Memisevic V, et al
Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions.
PLoS One. 2017;12:e0188071.
PubMed Text format Abstract available

SALDARRIAGA-CORDOBA M, Parkinson CL, Daza JM, Wuster W, et al
Phylogeography of the Central American lancehead Bothrops asper (SERPENTES: VIPERIDAE).
PLoS One. 2017;12:e0187969.
PubMed Text format Abstract available

TAI PWL, Wu H, van Wijnen AJ, Stein GS, et al
Genome-wide DNase hypersensitivity, and occupancy of RUNX2 and CTCF reveal a highly dynamic gene regulome during MC3T3 pre-osteoblast differentiation.
PLoS One. 2017;12:e0188056.
PubMed Text format Abstract available

AGREN J, Schafer MO, Forsgren E
Using whole genome sequencing to study American foulbrood epidemiology in honeybees.
PLoS One. 2017;12:e0187924.
PubMed Text format Abstract available

VISWANATHAN K, Verweij MC, John N, Malouli D, et al
Quantitative membrane proteomics reveals a role for tetraspanin enriched microdomains during entry of human cytomegalovirus.
PLoS One. 2017;12:e0187899.
PubMed Text format Abstract available

KAMALIDDIN C, Salnot V, Leduc M, Ezinmegnon S, et al
PFI1785w: A highly conserved protein associated with pregnancy associated malaria.
PLoS One. 2017;12:e0187817.
PubMed Text format Abstract available

LEI MG, Gupta RK, Lee CY
Proteomics of Staphylococcus aureus biofilm matrix in a rat model of orthopedic implant-associated infection.
PLoS One. 2017;12:e0187981.
PubMed Text format Abstract available

RIBEIRO T, Lemos F, Preto M, Azevedo J, et al
Cytotoxicity of portoamides in human cancer cells and analysis of the molecular mechanisms of action.
PLoS One. 2017;12:e0188817.
PubMed Text format Abstract available

REDDING DW, Lucas TCD, Blackburn TM, Jones KE, et al
Evaluating Bayesian spatial methods for modelling species distributions with clumped and restricted occurrence data.
PLoS One. 2017;12:e0187602.
PubMed Text format Abstract available

CAMPBELL MM, Susser E, Mall S, Mqulwana SG, et al
Using iterative learning to improve understanding during the informed consent process in a South African psychiatric genomics study.
PLoS One. 2017;12:e0188466.
PubMed Text format Abstract available

VEERA SINGHAM G, Othman AS, Lee CY
Phylogeography of the termite Macrotermes gilvus and insight into ancient dispersal corridors in Pleistocene Southeast Asia.
PLoS One. 2017;12:e0186690.
PubMed Text format Abstract available

SHEN C, Li X, Zhang R, Lin Z, et al
Genome-wide recombination rate variation in a recombination map of cotton.
PLoS One. 2017;12:e0188682.
PubMed Text format Abstract available

WANG SX, Zhu YL, Zhang DX, Shao H, et al
Genome-wide association study for grain yield and related traits in elite wheat varieties and advanced lines using SNP markers.
PLoS One. 2017;12:e0188662.
PubMed Text format Abstract available

HAILEMARIAM Z, Krucken J, Baumann M, Ahmed JS, et al
Molecular detection of tick-borne pathogens in cattle from Southwestern Ethiopia.
PLoS One. 2017;12:e0188248.
PubMed Text format Abstract available

BICER A, Orlando S, Islam ABMMK, Gallastegui E, et al
ChIP-Seq analysis identifies p27(Kip1)-target genes involved in cell adhesion and cell signalling in mouse embryonic fibroblasts.
PLoS One. 2017;12:e0187891.
PubMed Text format Abstract available

PILLAI VV, Weber DM, Phinney BS, Selvaraj V, et al
Profiling of proteins secreted in the bovine oviduct reveals diverse functions of this luminal microenvironment.
PLoS One. 2017;12:e0188105.
PubMed Text format Abstract available

ERDOGAN C, Kurt Z, Diri B
Estimation of the proteomic cancer co-expression sub networks by using association estimators.
PLoS One. 2017;12:e0188016.
PubMed Text format Abstract available

YILMAZ O, Patinote A, Nguyen TV, Com E, et al
Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio).
PLoS One. 2017;12:e0188084.
PubMed Text format Abstract available

JAGDAGSUREN D, Hayashida T, Takano M, Gombo E, et al
The second molecular epidemiological study of HIV infection in Mongolia between 2010 and 2016.
PLoS One. 2017;12:e0189605.
PubMed Text format Abstract available

ARAUJO SA, Soares AMDS, Silva CR, Almeida Junior EB, et al
In vitro anthelmintic effects of Spigelia anthelmia protein fractions against Haemonchus contortus.
PLoS One. 2017;12:e0189803.
PubMed Text format Abstract available

WANG S, Xiao SZ, Gu FF, Tang J, et al
Antimicrobial susceptibility and molecular epidemiology of clinical Enterobacter cloacae bloodstream isolates in Shanghai, China.
PLoS One. 2017;12:e0189713.
PubMed Text format Abstract available

BAUMSTEIGER J, Moyle PB, Aguilar A, O'Rourke SM, et al
Genomics clarifies taxonomic boundaries in a difficult species complex.
PLoS One. 2017;12:e0189417.
PubMed Text format Abstract available

PEREZ-RIVEROL Y, Kuhn M, Vizcaino JA, Hitz MP, et al
Accurate and fast feature selection workflow for high-dimensional omics data.
PLoS One. 2017;12:e0189875.
PubMed Text format Abstract available

PARMA D, Ferrer M, Luce L, Giliberto F, et al
RB1 gene mutations in Argentine retinoblastoma patients. Implications for genetic counseling.
PLoS One. 2017;12:e0189736.
PubMed Text format Abstract available

CAMACHO-ORTIZ A, Gutierrez-Delgado EM, Garcia-Mazcorro JF, Mendoza-Olazaran S, et al
Randomized clinical trial to evaluate the effect of fecal microbiota transplant for initial Clostridium difficile infection in intestinal microbiome.
PLoS One. 2017;12:e0189768.
PubMed Text format Abstract available

LIU X, Cao Y, Xue T, Wu R, et al
Genetic structure and diversity of Nodularia douglasiae (Bivalvia: Unionida) from the middle and lower Yangtze River drainage.
PLoS One. 2017;12:e0189737.
PubMed Text format Abstract available

HA S, Kim I, Takata T, Kinouchi T, et al
Identification of -amino acid-containing peptides in human serum.
PLoS One. 2017;12:e0189972.
PubMed Text format Abstract available

POPLAWSKI P, Wisniewski JR, Rijntjes E, Richards K, et al
Restoration of type 1 iodothyronine deiodinase expression in renal cancer cells downregulates oncoproteins and affects key metabolic pathways as well as anti-oxidative system.
PLoS One. 2017;12:e0190179.
PubMed Text format Abstract available

KONINI S, Janse van Rensburg EJ
Mean field analysis of algorithms for scale-free networks in molecular biology.
PLoS One. 2017;12:e0189866.
PubMed Text format Abstract available

MENEGHINE AK, Nielsen S, Varani AM, Thomas T, et al
Metagenomic analysis of soil and freshwater from zoo agricultural area with organic fertilization.
PLoS One. 2017;12:e0190178.
PubMed Text format Abstract available

LEE SH, Clark S, van der Werf JHJ
Estimation of genomic prediction accuracy from reference populations with varying degrees of relationship.
PLoS One. 2017;12:e0189775.
PubMed Text format Abstract available

JAFARI M, Ansari-Pour N, Azimzadeh S, Mirzaie M, et al
A logic-based dynamic modeling approach to explicate the evolution of the central dogma of molecular biology.
PLoS One. 2017;12:e0189922.
PubMed Text format Abstract available

MAHMOOD ASMA, Rao S, McGarvey P, Wu C, et al
eGARD: Extracting associations between genomic anomalies and drug responses from text.
PLoS One. 2017;12:e0189663.
PubMed Text format Abstract available

UFARTE L, Laville E, Duquesne S, Morgavi D, et al
Discovery of carbamate degrading enzymes by functional metagenomics.
PLoS One. 2017;12:e0189201.
PubMed Text format Abstract available

PAPINI A, Signorini MA, Foggi B, Della Giovampaola E, et al
History vs. legend: Retracing invasion and spread of Oxalis pes-caprae L. in Europe and the Mediterranean area.
PLoS One. 2017;12:e0190237.
PubMed Text format Abstract available

ANDRADE-SOUZA V, Silva JG, Hamada N
Phylogeography and population diversity of Simulium hirtipupa Lutz (Diptera: Simuliidae) based on mitochondrial COI sequences.
PLoS One. 2017;12:e0190091.
PubMed Text format Abstract available

January 2016

ZHENG Z, Bao M, Wu F, Chen J, et al
Predominance of Single Prophage Carrying a CRISPR/cas System in "Candidatus Liberibacter asiaticus" Strains in Southern China.
PLoS One. 2016;11:e0146422.
PubMed Text format Abstract available

KOPPRAM R, Mapelli V, Albers E, Olsson L, et al
The Presence of Pretreated Lignocellulosic Solids from Birch during Saccharomyces cerevisiae Fermentations Leads to Increased Tolerance to Inhibitors--A Proteomic Study of the Effects.
PLoS One. 2016;11:e0148635.
PubMed Text format Abstract available

CHEN T, Zhang L, Shang H, Liu S, et al
iTRAQ-Based Quantitative Proteomic Analysis of Cotton Roots and Leaves Reveals Pathways Associated with Salt Stress.
PLoS One. 2016;11:e0148487.
PubMed Text format Abstract available

LV X, Xia L, Ge D, Wen Z, et al
Continental Refugium in the Mongolian Plateau during Quaternary Glacial Oscillations: Phylogeography and Niche Modelling of the Endemic Desert Hamster, Phodopus roborovskii.
PLoS One. 2016;11:e0148182.
PubMed Text format Abstract available

FOSU-NYARKO J, Nicol P, Naz F, Gill R, et al
Analysis of the Transcriptome of the Infective Stage of the Beet Cyst Nematode, H. schachtii.
PLoS One. 2016;11:e0147511.
PubMed Text format Abstract available

WANG S, Zhao SY, Xiao SZ, Gu FF, et al
Antimicrobial Resistance and Molecular Epidemiology of Escherichia coli Causing Bloodstream Infections in Three Hospitals in Shanghai, China.
PLoS One. 2016;11:e0147740.
PubMed Text format Abstract available

GENG X, Jiang C, Yang J, Wang L, et al
Rapid Identification of Candidate Genes for Seed Weight Using the SLAF-Seq Method in Brassica napus.
PLoS One. 2016;11:e0147580.
PubMed Text format Abstract available

PERVAIZ T, Haifeng J, Salman Haider M, Cheng Z, et al
Transcriptomic Analysis of Grapevine (cv. Summer Black) Leaf, Using the Illumina Platform.
PLoS One. 2016;11:e0147369.
PubMed Text format Abstract available

LIU S, Zhao T, Song B, Zhou J, et al
Comparative Proteomics Reveals Important Viral-Host Interactions in HCV-Infected Human Liver Cells.
PLoS One. 2016;11:e0147991.
PubMed Text format Abstract available

LI S, Zhang Y, Wang J, Yang Y, et al
Combining Untargeted and Targeted Proteomic Strategies for Discrimination and Quantification of Cashmere Fibers.
PLoS One. 2016;11:e0147044.
PubMed Text format Abstract available

YANG CW, Chen MF
Uncovering the Potential Pan Proteomes Encoded by Genomic Strand RNAs of Influenza A Viruses.
PLoS One. 2016;11:e0146936.
PubMed Text format Abstract available

PRIGLINGER CS, Obermann J, Szober CM, Merl-Pham J, et al
Epithelial-to-Mesenchymal Transition of RPE Cells In Vitro Confers Increased beta1,6-N-Glycosylation and Increased Susceptibility to Galectin-3 Binding.
PLoS One. 2016;11:e0146887.
PubMed Text format Abstract available

XI Y, Cheng D, Zeng X, Cao J, et al
Evidences for Chlorogenic Acid--A Major Endogenous Polyphenol Involved in Regulation of Ripening and Senescence of Apple Fruit.
PLoS One. 2016;11:e0146940.
PubMed Text format Abstract available

DAVIDS M, Hugenholtz F, Martins dos Santos V, Smidt H, et al
Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.
PLoS One. 2016;11:e0146423.
PubMed Text format Abstract available

HSU TY, Lin H, Hung HN, Yang KD, et al
Two-Dimensional Differential Gel Electrophoresis to Identify Protein Biomarkers in Amniotic Fluid of Edwards Syndrome (Trisomy 18) Pregnancies.
PLoS One. 2016;11:e0145908.
PubMed Text format Abstract available

WU R, Nijland M, Rutgers B, Veenstra R, et al
Proteomics Based Identification of Proteins with Deregulated Expression in B Cell Lymphomas.
PLoS One. 2016;11:e0146624.
PubMed Text format Abstract available

ZHOU L, Li Y, Hussain N, Li Z, et al
Allelic Variation of BnaC.TT2.a and Its Association with Seed Coat Color and Fatty Acids in Rapeseed (Brassica napus L.).
PLoS One. 2016;11:e0146661.
PubMed Text format Abstract available

RAMASINDRAZANA B, Dellagi K, Lagadec E, Randrianarivelojosia M, et al
Diversity, Host Specialization, and Geographic Structure of Filarial Nematodes Infecting Malagasy Bats.
PLoS One. 2016;11:e0145709.
PubMed Text format Abstract available

MORO T, Nakao S, Sumiyoshi H, Ishii T, et al
A Combination of Mitochondrial Oxidative Stress and Excess Fat/Calorie Intake Accelerates Steatohepatitis by Enhancing Hepatic CC Chemokine Production in Mice.
PLoS One. 2016;11:e0146592.
PubMed Text format Abstract available

DI LUCA M, Toma L, Boccolini D, Severini F, et al
Ecological Distribution and CQ11 Genetic Structure of Culex pipiens Complex (Diptera: Culicidae) in Italy.
PLoS One. 2016;11:e0146476.
PubMed Text format Abstract available

CRISTIANO MP, Clemes Cardoso D, Fernandes-Salomao TM, Heinze J, et al
Integrating Paleodistribution Models and Phylogeography in the Grass-Cutting Ant Acromyrmex striatus (Hymenoptera: Formicidae) in Southern Lowlands of South America.
PLoS One. 2016;11:e0146734.
PubMed Text format Abstract available

DE BRITO DM, Maracaja-Coutinho V, de Farias ST, Batista LV, et al
A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm.
PLoS One. 2016;11:e0146352.
PubMed Text format Abstract available

MCASSEY EV, Gudger EG, Zuellig MP, Burke JM, et al
Population Genetics of the Rubber-Producing Russian Dandelion (Taraxacum kok-saghyz).
PLoS One. 2016;11:e0146417.
PubMed Text format Abstract available

MISRA N, Panda PK, Parida BK, Mishra BK, et al
dEMBF: A Comprehensive Database of Enzymes of Microalgal Biofuel Feedstock.
PLoS One. 2016;11:e0146158.
PubMed Text format Abstract available

LIU G, Weston CQ, Pham LK, Waltz S, et al
Epigenetic Segregation of Microbial Genomes from Complex Samples Using Restriction Endonucleases HpaII and McrB.
PLoS One. 2016;11:e0146064.
PubMed Text format Abstract available

BAUR B, Bozdag S
A Feature Selection Algorithm to Compute Gene Centric Methylation from Probe Level Methylation Data.
PLoS One. 2016;11:e0148977.
PubMed Text format Abstract available

CLOONEY AG, Fouhy F, Sleator RD, O' Driscoll A, et al
Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.
PLoS One. 2016;11:e0148028.
PubMed Text format Abstract available

LU M, An H, Li L
Genome Survey Sequencing for the Characterization of the Genetic Background of Rosa roxburghii Tratt and Leaf Ascorbate Metabolism Genes.
PLoS One. 2016;11:e0147530.
PubMed Text format Abstract available

HAN G, Xu J, Liu Q, Li C, et al
Genome of Cnaphalocrocis medinalis Granulovirus, the First Crambidae-Infecting Betabaculovirus Isolated from Rice Leaffolder to Sequenced.
PLoS One. 2016;11:e0147882.
PubMed Text format Abstract available

CHEN GW, Kuo SM, Yang SL, Gong YN, et al
Genomic Signatures for Avian H7N9 Viruses Adapting to Humans.
PLoS One. 2016;11:e0148432.
PubMed Text format Abstract available

KOMOTO S, Tacharoenmuang R, Guntapong R, Ide T, et al
Reassortment of Human and Animal Rotavirus Gene Segments in Emerging DS-1-Like G1P[8] Rotavirus Strains.
PLoS One. 2016;11:e0148416.
PubMed Text format Abstract available

PANDEY RV, Pabinger S, Kriegner A, Weinhausel A, et al
MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics.
PLoS One. 2016;11:e0147697.
PubMed Text format Abstract available

SYME RA, Tan KC, Hane JK, Dodhia K, et al
Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics.
PLoS One. 2016;11:e0147221.
PubMed Text format Abstract available

BARB JJ, Oler AJ, Kim HS, Chalmers N, et al
Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples.
PLoS One. 2016;11:e0148047.
PubMed Text format Abstract available

LIU B, Gao F, Guo J, Wu D, et al
A Microarray-Based Analysis Reveals that a Short Photoperiod Promotes Hair Growth in the Arbas Cashmere Goat.
PLoS One. 2016;11:e0147124.
PubMed Text format Abstract available

KEMPF F, Slugocki C, Blum SE, Leitner G, et al
Genomic Comparative Study of Bovine Mastitis Escherichia coli.
PLoS One. 2016;11:e0147954.
PubMed Text format Abstract available

TAY WT, Kerr PJ, Jermiin LS
Population Genetic Structure and Potential Incursion Pathways of the Bluetongue Virus Vector Culicoides brevitarsis (Diptera: Ceratopogonidae) in Australia.
PLoS One. 2016;11:e0146699.
PubMed Text format Abstract available

SPETALE FE, Tapia E, Krsticevic F, Roda F, et al
A Factor Graph Approach to Automated GO Annotation.
PLoS One. 2016;11:e0146986.
PubMed Text format Abstract available

BROMAGE TG, Idaghdour Y, Lacruz RS, Crenshaw TD, et al
The Swine Plasma Metabolome Chronicles "Many Days" Biological Timing and Functions Linked to Growth.
PLoS One. 2016;11:e0145919.
PubMed Text format Abstract available

PORTER TM, Shokralla S, Baird D, Golding GB, et al
Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas.
PLoS One. 2016;11:e0142759.
PubMed Text format Abstract available

MASOMIAN M, Rahman RN, Salleh AB, Basri M, et al
Analysis of Comparative Sequence and Genomic Data to Verify Phylogenetic Relationship and Explore a New Subfamily of Bacterial Lipases.
PLoS One. 2016;11:e0149851.
PubMed Text format Abstract available

AGALLOU M, Athanasiou E, Samiotaki M, Panayotou G, et al
Identification of Immunoreactive Leishmania infantum Protein Antigens to Asymptomatic Dog Sera through Combined Immunoproteomics and Bioinformatics Analysis.
PLoS One. 2016;11:e0149894.
PubMed Text format Abstract available

NUSS A, Carlos CJ, Moreno IB, Fagundes NJ, et al
Population Genetic Structure of the Magnificent Frigatebird Fregata magnificens (Aves, Suliformes) Breeding Colonies in the Western Atlantic Ocean.
PLoS One. 2016;11:e0149834.
PubMed Text format Abstract available

GAO H, Zhai Y, Wang W, Chen H, et al
Transcriptome Analysis and Discovery of Genes Relevant to Development in Bradysia odoriphaga at Three Developmental Stages.
PLoS One. 2016;11:e0146812.
PubMed Text format Abstract available

LIU X, Winterton SL
A New Fishfly Species (Megaloptera: Corydalidae: Neohermes Banks) Discovered from North America by a Systematic Revision, with Phylogenetic and Biogeographic Implications.
PLoS One. 2016;11:e0148319.
PubMed Text format Abstract available

HALL KW, Eisthen HL, Williams BL
Proteinaceous Pheromone Homologs Identified from the Cloacal Gland Transcriptome of a Male Axolotl, Ambystoma mexicanum.
PLoS One. 2016;11:e0146851.
PubMed Text format Abstract available

ACOSTA AL, Giannini TC, Imperatriz-Fonseca VL, Saraiva AM, et al
Worldwide Alien Invasion: A Methodological Approach to Forecast the Potential Spread of a Highly Invasive Pollinator.
PLoS One. 2016;11:e0148295.
PubMed Text format Abstract available

MATEUS CS, Almeida PR, Mesquita N, Quintella BR, et al
European Lampreys: New Insights on Postglacial Colonization, Gene Flow and Speciation.
PLoS One. 2016;11:e0148107.
PubMed Text format Abstract available

ZEH C, Inzaule SC, Ondoa P, Nafisa LG, et al
Molecular Epidemiology and Transmission Dynamics of Recent and Long-Term HIV-1 Infections in Rural Western Kenya.
PLoS One. 2016;11:e0147436.
PubMed Text format Abstract available

SKIPP PJ, Hughes C, McKenna T, Edwards R, et al
Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis.
PLoS One. 2016;11:e0149011.
PubMed Text format Abstract available

MARSH A, Casey-Green K, Probert F, Withall D, et al
Simvastatin Sodium Salt and Fluvastatin Interact with Human Gap Junction Gamma-3 Protein.
PLoS One. 2016;11:e0148266.
PubMed Text format Abstract available

ALORS D, Lumbsch HT, Divakar PK, Leavitt SD, et al
An Integrative Approach for Understanding Diversity in the Punctelia rudecta Species Complex (Parmeliaceae, Ascomycota).
PLoS One. 2016;11:e0146537.
PubMed Text format Abstract available

MUKAIHARA K, Suehara Y, Kohsaka S, Akaike K, et al
Protein Expression Profiling of Giant Cell Tumors of Bone Treated with Denosumab.
PLoS One. 2016;11:e0148401.
PubMed Text format Abstract available

NAKAYAMA-IMAOHJI H, Hirota K, Yamasaki H, Yoneda S, et al
DNA Inversion Regulates Outer Membrane Vesicle Production in Bacteroides fragilis.
PLoS One. 2016;11:e0148887.
PubMed Text format Abstract available

BLOMFELDT A, Hasan AA, Aamot HV
Can MLVA Differentiate among Endemic-Like MRSA Isolates with Identical Spa-Type in a Low-Prevalence Region?
PLoS One. 2016;11:e0148772.
PubMed Text format Abstract available

BONTHALA VS, Mayes K, Moreton J, Blythe M, et al
Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis.
PLoS One. 2016;11:e0148771.
PubMed Text format Abstract available

KYRKJEEIDE MO, Hassel K, Flatberg KI, Shaw AJ, et al
Spatial Genetic Structure of the Abundant and Widespread Peatmoss Sphagnum magellanicum Brid.
PLoS One. 2016;11:e0148447.
PubMed Text format Abstract available

ZENKER MM, Rougerie R, Teston JA, Laguerre M, et al
Fast Census of Moth Diversity in the Neotropics: A Comparison of Field-Assigned Morphospecies and DNA Barcoding in Tiger Moths.
PLoS One. 2016;11:e0148423.
PubMed Text format Abstract available

ALHADDAD H, Zhang C, Rannala B, Lyons LA, et al
A Glance at Recombination Hotspots in the Domestic Cat.
PLoS One. 2016;11:e0148710.
PubMed Text format Abstract available

VAL S, Burgett K, Brown KJ, Preciado D, et al
SuperSILAC Quantitative Proteome Profiling of Murine Middle Ear Epithelial Cell Remodeling with NTHi.
PLoS One. 2016;11:e0148612.
PubMed Text format Abstract available

BOULDING T, Wu F, McCuaig R, Dunn J, et al
Differential Roles for DUSP Family Members in Epithelial-to-Mesenchymal Transition and Cancer Stem Cell Regulation in Breast Cancer.
PLoS One. 2016;11:e0148065.
PubMed Text format Abstract available

SHI H, Zhang G, Zhou M, Cheng L, et al
Integration of Multiple Genomic and Phenotype Data to Infer Novel miRNA-Disease Associations.
PLoS One. 2016;11:e0148521.
PubMed Text format Abstract available

XU Y, Guo N, Dou D, Ran X, et al
Proteomics Study on Nonallergic Hypersensitivity Induced by Compound 4880 and Ovalbumin.
PLoS One. 2016;11:e0148262.
PubMed Text format Abstract available

YI L, Lin G, Zhang K, Wang L, et al
Molecular Genetics External Quality Assessment Pilot Scheme for Irinotecan-Related UGT1A1 Genotyping in China.
PLoS One. 2016;11:e0148081.
PubMed Text format Abstract available

ZHAO P, Zhang J, Zhao X, Chen G, et al
Different Sets of Post-Embryonic Development Genes Are Conserved or Lost in Two Caryophyllales Species (Reaumuria soongorica and Agriophyllum squarrosum).
PLoS One. 2016;11:e0148034.
PubMed Text format Abstract available

BERM EJ, Looff Md, Wilffert B, Boersma C, et al
Economic Evaluations of Pharmacogenetic and Pharmacogenomic Screening Tests: A Systematic Review. Second Update of the Literature.
PLoS One. 2016;11:e0146262.
PubMed Text format Abstract available

ZHOU Y, Yang P, Cui F, Zhang F, et al
Transcriptome Analysis of Salt Stress Responsiveness in the Seedlings of Dongxiang Wild Rice (Oryza rufipogon Griff.).
PLoS One. 2016;11:e0146242.
PubMed Text format Abstract available

WANG L, Xu W, Cao L, Tian T, et al
Differential Expression of Proteins Associated with the Hair Follicle Cycle - Proteomics and Bioinformatics Analyses.
PLoS One. 2016;11:e0146791.
PubMed Text format Abstract available

LAI A, Bozzi G, Franzetti M, Binda F, et al
HIV-1 A1 Subtype Epidemic in Italy Originated from Africa and Eastern Europe and Shows a High Frequency of Transmission Chains Involving Intravenous Drug Users.
PLoS One. 2016;11:e0146097.
PubMed Text format Abstract available

SHILOVA IN, Robidart JC, DeLong EF, Zehr JP, et al
Genetic Diversity Affects the Daily Transcriptional Oscillations of Marine Microbial Populations.
PLoS One. 2016;11:e0146706.
PubMed Text format Abstract available

SURUJON D, Ratner DI
Use of a Probabilistic Motif Search to Identify Histidine Phosphotransfer Domain-Containing Proteins.
PLoS One. 2016;11:e0146577.
PubMed Text format Abstract available

QUECINE MC, Leite TF, Bini AP, Regiani T, et al
Label-Free Quantitative Proteomic Analysis of Puccinia psidii Uredospores Reveals Differences of Fungal Populations Infecting Eucalyptus and Guava.
PLoS One. 2016;11:e0145343.
PubMed Text format Abstract available

MARKIANOS K, Bischoff E, Mitri C, Guelbeogo WM, et al
Genetic Structure of a Local Population of the Anopheles gambiae Complex in Burkina Faso.
PLoS One. 2016;11:e0145308.
PubMed Text format Abstract available

KIM W, Park H, Seo S
Global Metabolic Reconstruction and Metabolic Gene Evolution in the Cattle Genome.
PLoS One. 2016;11:e0150974.
PubMed Text format Abstract available

ZEPEDA MENDOZA ML, Lundberg J, Ivarsson M, Campos P, et al
Metagenomic Analysis from the Interior of a Speleothem in Tjuv-Ante's Cave, Northern Sweden.
PLoS One. 2016;11:e0151577.
PubMed Text format Abstract available

SHINNEMAN DJ, Means RE, Potter KM, Hipkins VD, et al
Exploring Climate Niches of Ponderosa Pine (Pinus ponderosa Douglas ex Lawson) Haplotypes in the Western United States: Implications for Evolutionary History and Conservation.
PLoS One. 2016;11:e0151811.
PubMed Text format Abstract available

TONG HY, Davila-Fajardo CL, Borobia AM, Martinez-Gonzalez LJ, et al
A New Pharmacogenetic Algorithm to Predict the Most Appropriate Dosage of Acenocoumarol for Stable Anticoagulation in a Mixed Spanish Population.
PLoS One. 2016;11:e0150456.
PubMed Text format Abstract available

MURGARELLA M, Puiu D, Novoa B, Figueras A, et al
A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis.
PLoS One. 2016;11:e0151561.
PubMed Text format Abstract available

GONZALEZ-PENA D, Nixon SE, O'Connor JC, Southey BR, et al
Microglia Transcriptome Changes in a Model of Depressive Behavior after Immune Challenge.
PLoS One. 2016;11:e0150858.
PubMed Text format Abstract available

DOWLING TE, Markle DF, Tranah GJ, Carson EW, et al
Introgressive Hybridization and the Evolution of Lake-Adapted Catostomid Fishes.
PLoS One. 2016;11:e0149884.
PubMed Text format Abstract available

CHAN BK, Chen HN, Dando PR, Southward AJ, et al
Biodiversity and Biogeography of Chthamalid Barnacles from the North-Eastern Pacific (Crustacea Cirripedia).
PLoS One. 2016;11:e0149556.
PubMed Text format Abstract available

WAKARCHUK WW, Brochu D, Foote S, Robotham A, et al
Proteomic Analysis of the Secretome of Cellulomonas fimi ATCC 484 and Cellulomonas flavigena ATCC 482.
PLoS One. 2016;11:e0151186.
PubMed Text format Abstract available

REGAN E, Sibley RC, Cenik BK, Silva A, et al
Identification of Gene Expression Differences between Lymphangiogenic and Non-Lymphangiogenic Non-Small Cell Lung Cancer Cell Lines.
PLoS One. 2016;11:e0150963.
PubMed Text format Abstract available

BURALL LS, Grim CJ, Mammel MK, Datta AR, et al
Whole Genome Sequence Analysis Using JSpecies Tool Establishes Clonal Relationships between Listeria monocytogenes Strains from Epidemiologically Unrelated Listeriosis Outbreaks.
PLoS One. 2016;11:e0150797.
PubMed Text format Abstract available

KONG Z, Zhao P, Liu H, Yu X, et al
Whole-Genome Sequencing for the Investigation of a Hospital Outbreak of MRSA in China.
PLoS One. 2016;11:e0149844.
PubMed Text format Abstract available

VALENCIA A, Wang H, Soto A, Aristizabal M, et al
Pyrosequencing the Midgut Transcriptome of the Banana Weevil Cosmopolites sordidus (Germar) (Coleoptera: Curculionidae) Reveals Multiple Protease-Like Transcripts.
PLoS One. 2016;11:e0151001.
PubMed Text format Abstract available

KOTWAL S, Kaul S, Sharma P, Gupta M, et al
De Novo Transcriptome Analysis of Medicinally Important Plantago ovata Using RNA-Seq.
PLoS One. 2016;11:e0150273.
PubMed Text format Abstract available

SRIDHARAN V, Heimiller J, Robida MD, Singh R, et al
High Throughput Sequencing Identifies Misregulated Genes in the Drosophila Polypyrimidine Tract-Binding Protein (hephaestus) Mutant Defective in Spermatogenesis.
PLoS One. 2016;11:e0150768.
PubMed Text format Abstract available

WAKU D, Segawa T, Yonezawa T, Akiyoshi A, et al
Evaluating the Phylogenetic Status of the Extinct Japanese Otter on the Basis of Mitochondrial Genome Analysis.
PLoS One. 2016;11:e0149341.
PubMed Text format Abstract available

MAURY J, Germann SM, Baallal Jacobsen SA, Jensen NB, et al
EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae.
PLoS One. 2016;11:e0150394.
PubMed Text format Abstract available

FERNANDES A, Vinga S
Improving Protein Expression Prediction Using Extra Features and Ensemble Averaging.
PLoS One. 2016;11:e0150369.
PubMed Text format Abstract available

TROAST D, Suhling F, Jinguji H, Sahlen G, et al
A Global Population Genetic Study of Pantala flavescens.
PLoS One. 2016;11:e0148949.
PubMed Text format Abstract available

YOUNIS S, Javed Q, Blumenberg M
Meta-Analysis of Transcriptional Responses to Mastitis-Causing Escherichia coli.
PLoS One. 2016;11:e0148562.
PubMed Text format Abstract available

PENGPUMKIAT S, Koesdjojo M, Rowley ER, Mockler TC, et al
Rapid Synthesis of a Long Double-Stranded Oligonucleotide from a Single-Stranded Nucleotide Using Magnetic Beads and an Oligo Library.
PLoS One. 2016;11:e0149774.
PubMed Text format Abstract available

BOON-PENG H, Mat Jusoh JA, Marshall CR, Majid F, et al
Rare Copy Number Variants Identified Suggest the Regulating Pathways in Hypertension-Related Left Ventricular Hypertrophy.
PLoS One. 2016;11:e0148755.
PubMed Text format Abstract available

PIRRO S, Zanella L, Kenzo M, Montesano C, et al
MicroRNA from Moringa oleifera: Identification by High Throughput Sequencing and Their Potential Contribution to Plant Medicinal Value.
PLoS One. 2016;11:e0149495.
PubMed Text format Abstract available

MA L, Li ZQ, Bian L, Cai XM, et al
Identification and Comparative Study of Chemosensory Genes Related to Host Selection by Legs Transcriptome Analysis in the Tea Geometrid Ectropis obliqua.
PLoS One. 2016;11:e0149591.
PubMed Text format Abstract available

SKVORTSOV T, de Leeuwe C, Quinn JP, McGrath JW, et al
Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland.
PLoS One. 2016;11:e0150361.
PubMed Text format Abstract available

FARASAT H, Akmali V, Sharifi M
Population Genetic Structure of the Endangered Kaiser's Mountain Newt, Neurergus kaiseri (Amphibia: Salamandridae).
PLoS One. 2016;11:e0149596.
PubMed Text format Abstract available

GLEIZE Y, Mendisco F, Pemonge MH, Hubert C, et al
Early Medieval Muslim Graves in France: First Archaeological, Anthropological and Palaeogenomic Evidence.
PLoS One. 2016;11:e0148583.
PubMed Text format Abstract available

SISTROM M, Evans B, Benoit J, Balmer O, et al
De Novo Genome Assembly Shows Genome Wide Similarity between Trypanosoma brucei brucei and Trypanosoma brucei rhodesiense.
PLoS One. 2016;11:e0147660.
PubMed Text format Abstract available

OIKKONEN J, Kuusi T, Peltonen P, Raijas P, et al
Creative Activities in Music--A Genome-Wide Linkage Analysis.
PLoS One. 2016;11:e0148679.
PubMed Text format Abstract available

GUTTIKONDA SK, Marri P, Mammadov J, Ye L, et al
Molecular Characterization of Transgenic Events Using Next Generation Sequencing Approach.
PLoS One. 2016;11:e0149515.
PubMed Text format Abstract available

HU K, Ma RR, Cheng JM, Ye X, et al
Analysis of Saprolegnia parasitica Transcriptome following Treatment with Copper Sulfate.
PLoS One. 2016;11:e0147445.
PubMed Text format Abstract available

AL-TOBASEI R, Paneru B, Salem M
Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout.
PLoS One. 2016;11:e0148940.
PubMed Text format Abstract available

NOSAK C, Silva PN, Sollazzo P, Moon KM, et al
Jagn1 Is Induced in Response to ER Stress and Regulates Proinsulin Biosynthesis.
PLoS One. 2016;11:e0149177.
PubMed Text format Abstract available

DE LUCA D, Catanese G, Procaccini G, Fiorito G, et al
Octopus vulgaris (Cuvier, 1797) in the Mediterranean Sea: Genetic Diversity and Population Structure.
PLoS One. 2016;11:e0149496.
PubMed Text format Abstract available

TUETTENBERG A, Hahn SA, Mazur J, Gerhold-Ay A, et al
Kinome Profiling of Regulatory T Cells: A Closer Look into a Complex Intracellular Network.
PLoS One. 2016;11:e0149193.
PubMed Text format Abstract available

PATNAIK BB, Wang TH, Kang SW, Hwang HJ, et al
Sequencing, De Novo Assembly, and Annotation of the Transcriptome of the Endangered Freshwater Pearl Bivalve, Cristaria plicata, Provides Novel Insights into Functional Genes and Marker Discovery.
PLoS One. 2016;11:e0148622.
PubMed Text format Abstract available

JIANG S, Zheng X, Yu P, Yue X, et al
Primitive Genepools of Asian Pears and Their Complex Hybrid Origins Inferred from Fluorescent Sequence-Specific Amplification Polymorphism (SSAP) Markers Based on LTR Retrotransposons.
PLoS One. 2016;11:e0149192.
PubMed Text format Abstract available

PUGH BF, Venters BJ
Genomic Organization of Human Transcription Initiation Complexes.
PLoS One. 2016;11:e0149339.
PubMed Text format Abstract available

QIAN J, Nunez S, Reed E, Reilly MP, et al
A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci.
PLoS One. 2016;11:e0148218.
PubMed Text format Abstract available

MEHDIZADEH GOHARI I, Kropinski AM, Weese SJ, Parreira VR, et al
Plasmid Characterization and Chromosome Analysis of Two netF+ Clostridium perfringens Isolates Associated with Foal and Canine Necrotizing Enteritis.
PLoS One. 2016;11:e0148344.
PubMed Text format Abstract available

LIU CH, Ho BC, Chen CL, Chang YH, et al
ePIANNO: ePIgenomics ANNOtation tool.
PLoS One. 2016;11:e0148321.
PubMed Text format Abstract available

JIN W, Wu F
Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum).
PLoS One. 2016;11:e0147586.
PubMed Text format Abstract available

GRAHAM CF, Eberts RL, Morgan TD, Boreham DR, et al
Fine-Scale Ecological and Genetic Population Structure of Two Whitefish (Coregoninae) Species in the Vicinity of Industrial Thermal Emissions.
PLoS One. 2016;11:e0146656.
PubMed Text format Abstract available

GRAHAM NR, Fisher BL, Girman DJ
Phylogeography in Response to Reproductive Strategies and Ecogeographic Isolation in Ant Species on Madagascar: Genus Mystrium (Formicidae: Amblyoponinae).
PLoS One. 2016;11:e0146170.
PubMed Text format Abstract available

UDDIN R, Sufian M
Core Proteomic Analysis of Unique Metabolic Pathways of Salmonella enterica for the Identification of Potential Drug Targets.
PLoS One. 2016;11:e0146796.
PubMed Text format Abstract available

MARTILL DM, Vidovic SU, Howells C, Nudds JR, et al
The Oldest Jurassic Dinosaur: A Basal Neotheropod from the Hettangian of Great Britain.
PLoS One. 2016;11:e0145713.
PubMed Text format Abstract available

CHOMICKI G, Renner SS
Evolutionary Relationships and Biogeography of the Ant-Epiphytic Genus Squamellaria (Rubiaceae: Psychotrieae) and Their Taxonomic Implications.
PLoS One. 2016;11:e0151317.
PubMed Text format Abstract available

LE BOMIN S, Lecointre G, Heyer E
The Evolution of Musical Diversity: The Key Role of Vertical Transmission.
PLoS One. 2016;11:e0151570.
PubMed Text format Abstract available

SU MM, Guo L, Tao YL, Zhang YJ, et al
Effects of Host Plant Factors on the Bacterial Communities Associated with Two Whitefly Sibling Species.
PLoS One. 2016;11:e0152183.
PubMed Text format Abstract available

ZHOU T, Li C, Zhao W, Wang X, et al
MaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuant.
PLoS One. 2016;11:e0152067.
PubMed Text format Abstract available

HE JJ, Ma J, Elsheikha HM, Song HQ, et al
Proteomic Profiling of Mouse Liver following Acute Toxoplasma gondii Infection.
PLoS One. 2016;11:e0152022.
PubMed Text format Abstract available

LUO JY, Zhang S, Wang L, Lv LM, et al
The Distribution and Host Shifts of Cotton-Melon Aphids in Northern China.
PLoS One. 2016;11:e0152103.
PubMed Text format Abstract available

KUGELMAN JR, Rossi CA, Wiley MR, Ladner JT, et al
Informing the Historical Record of Experimental Nonhuman Primate Infections with Ebola Virus: Genomic Characterization of USAMRIID Ebola Virus/H.sapiens-tc/COD/1995/Kikwit-9510621 Challenge Stock "R4368" and Its Replacement "R4415".
PLoS One. 2016;11:e0150919.
PubMed Text format Abstract available

YAP TW, Gan HM, Lee YP, Leow AH, et al
Helicobacter pylori Eradication Causes Perturbation of the Human Gut Microbiome in Young Adults.
PLoS One. 2016;11:e0151893.
PubMed Text format Abstract available

LIU X, Li X, Liu H, Xu C, et al
Phylogenetic Analysis of Different Ploidy Saccharum spontaneum Based on rDNA-ITS Sequences.
PLoS One. 2016;11:e0151524.
PubMed Text format Abstract available

PANG Q, Gao L, Hu W, An Y, et al
De Novo Transcriptome Analysis Provides Insights into Immune Related Genes and the RIG-I-Like Receptor Signaling Pathway in the Freshwater Planarian (Dugesia japonica).
PLoS One. 2016;11:e0151597.
PubMed Text format Abstract available

WATANABE J, Takiyama Y, Honjyo J, Makino Y, et al
Role of IGFBP7 in Diabetic Nephropathy: TGF-beta1 Induces IGFBP7 via Smad2/4 in Human Renal Proximal Tubular Epithelial Cells.
PLoS One. 2016;11:e0150897.
PubMed Text format Abstract available

KUCHTA SR, Brown AD, Converse PE, Highton R, et al
Multilocus Phylogeography and Species Delimitation in the Cumberland Plateau Salamander, Plethodon kentucki: Incongruence among Data Sets and Methods.
PLoS One. 2016;11:e0150022.
PubMed Text format Abstract available

CSAKYOVA V, Szecsenyi-Nagy A, Csosz A, Nagy M, et al
Maternal Genetic Composition of a Medieval Population from a Hungarian-Slavic Contact Zone in Central Europe.
PLoS One. 2016;11:e0151206.
PubMed Text format Abstract available

ZHONG X, Feng D, Yu H, Kong L, et al
Genetic Variation and Breeding Signature in Mass Selection Lines of the Pacific Oyster (Crassostrea gigas) Assessed by SNP Markers.
PLoS One. 2016;11:e0150868.
PubMed Text format Abstract available

KHOONSARI PE, Haggmark A, Lonnberg M, Mikus M, et al
Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease.
PLoS One. 2016;11:e0150672.
PubMed Text format Abstract available

THOMPSON J, Ma F, Quinn M, Xiang SH, et al
Genome-Wide Search for Host Association Factors during Ovine Progressive Pneumonia Virus Infection.
PLoS One. 2016;11:e0150344.
PubMed Text format Abstract available

GU C, Tembrock LR, Johnson NG, Simmons MP, et al
The Complete Plastid Genome of Lagerstroemia fauriei and Loss of rpl2 Intron from Lagerstroemia (Lythraceae).
PLoS One. 2016;11:e0150752.
PubMed Text format Abstract available

DI LUCA A, Hamill RM, Mullen AM, Slavov N, et al
Comparative Proteomic Profiling of Divergent Phenotypes for Water Holding Capacity across the Post Mortem Ageing Period in Porcine Muscle Exudate.
PLoS One. 2016;11:e0150605.
PubMed Text format Abstract available

ROWE CL, Wagstaff KM, Oksayan S, Glover DJ, et al
Nuclear Trafficking of the Rabies Virus Interferon Antagonist P-Protein Is Regulated by an Importin-Binding Nuclear Localization Sequence in the C-Terminal Domain.
PLoS One. 2016;11:e0150477.
PubMed Text format Abstract available

SAYONO S, Hidayati AP, Fahri S, Sumanto D, et al
Distribution of Voltage-Gated Sodium Channel (Nav) Alleles among the Aedes aegypti Populations In Central Java Province and Its Association with Resistance to Pyrethroid Insecticides.
PLoS One. 2016;11:e0150577.
PubMed Text format Abstract available

MARTINS-PINHEIRO M, Lima WC, Asif H, Oller CA, et al
Evolutionary and Functional Relationships of the dha Regulon by Genomic Context Analysis.
PLoS One. 2016;11:e0150772.
PubMed Text format Abstract available

DENYER MP, Pinheiro DY, Garden OA, Shepherd AJ, et al
Missed, Not Missing: Phylogenomic Evidence for the Existence of Avian FoxP3.
PLoS One. 2016;11:e0150988.
PubMed Text format Abstract available

WILLE M, Muradrasoli S, Nilsson A, Jarhult JD, et al
High Prevalence and Putative Lineage Maintenance of Avian Coronaviruses in Scandinavian Waterfowl.
PLoS One. 2016;11:e0150198.
PubMed Text format Abstract available

AI Z, Shao J, Wu Y, Yu M, et al
CHIR99021 enhances Klf4 Expression through beta-Catenin Signaling and miR-7a Regulation in J1 Mouse Embryonic Stem Cells.
PLoS One. 2016;11:e0150936.
PubMed Text format Abstract available

MENG G, Zhong X, Mei H
A Systematic Investigation into Aging Related Genes in Brain and Their Relationship with Alzheimer's Disease.
PLoS One. 2016;11:e0150624.
PubMed Text format Abstract available

KATSAROU K, Wu Y, Zhang R, Bonar N, et al
Insight on Genes Affecting Tuber Development in Potato upon Potato spindle tuber viroid (PSTVd) Infection.
PLoS One. 2016;11:e0150711.
PubMed Text format Abstract available

YANG Y, Liu W, Ding R, Xiong L, et al
Comprehensive Expression Profiling and Functional Network Analysis of p53-Regulated MicroRNAs in HepG2 Cells Treated with Doxorubicin.
PLoS One. 2016;11:e0149227.
PubMed Text format Abstract available

RIZZO G, Veronese M, Expert P, Turkheimer FE, et al
MENGA: A New Comprehensive Tool for the Integration of Neuroimaging Data and the Allen Human Brain Transcriptome Atlas.
PLoS One. 2016;11:e0148744.
PubMed Text format Abstract available

NAGPAL S, Haque MM, Mande SS
Vikodak--A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets.
PLoS One. 2016;11:e0148347.
PubMed Text format Abstract available

WANG T, Zhao M, Rotgans BA, Strong A, et al
Proteomic Analysis of the Schistosoma mansoni Miracidium.
PLoS One. 2016;11:e0147247.
PubMed Text format Abstract available

CUGNO G, Parreira JR, Ferlizza E, Hernandez-Castellano LE, et al
The Goat (Capra hircus) Mammary Gland Mitochondrial Proteome: A Study on the Effect of Weight Loss Using Blue-Native PAGE and Two-Dimensional Gel Electrophoresis.
PLoS One. 2016;11:e0151599.
PubMed Text format Abstract available

MAHMOOD K, Hojland DH, Asp T, Kristensen M, et al
Transcriptome Analysis of an Insecticide Resistant Housefly Strain: Insights about SNPs and Regulatory Elements in Cytochrome P450 Genes.
PLoS One. 2016;11:e0151434.
PubMed Text format Abstract available

LESPERANCE M, Reed WJ, Stephens MA, Tsao C, et al
Assessing Conformance with Benford's Law: Goodness-Of-Fit Tests and Simultaneous Confidence Intervals.
PLoS One. 2016;11:e0151235.
PubMed Text format Abstract available

MUNNS KD, Zaheer R, Xu Y, Stanford K, et al
Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle.
PLoS One. 2016;11:e0151673.
PubMed Text format Abstract available

WALDMAN YY, Biddanda A, Davidson NR, Billing-Ross P, et al
The Genetics of Bene Israel from India Reveals Both Substantial Jewish and Indian Ancestry.
PLoS One. 2016;11:e0152056.
PubMed Text format Abstract available

GAN L, Di R, Chao Y, Han L, et al
De Novo Transcriptome Analysis for Kentucky Bluegrass Dwarf Mutants Induced by Space Mutation.
PLoS One. 2016;11:e0151768.
PubMed Text format Abstract available

SUCHAN T, Pitteloud C, Gerasimova NS, Kostikova A, et al
Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens.
PLoS One. 2016;11:e0151651.
PubMed Text format Abstract available

LIU F, Zheng H, Tong W, Li GX, et al
Identification and Analysis of Novel Viral and Host Dysregulated MicroRNAs in Variant Pseudorabies Virus-Infected PK15 Cells.
PLoS One. 2016;11:e0151546.
PubMed Text format Abstract available

BAIOCCHINI A, Montaldo C, Conigliaro A, Grimaldi A, et al
Extracellular Matrix Molecular Remodeling in Human Liver Fibrosis Evolution.
PLoS One. 2016;11:e0151736.
PubMed Text format Abstract available

KIM JY, Goo YK, Zo YG, Ji SY, et al
Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent Years.
PLoS One. 2016;11:e0151514.
PubMed Text format Abstract available

BULAT T, Smidak R, Sialana FJ, Jung G, et al
Transcriptomic and Proteomic Analysis of Arion vulgaris--Proteins for Probably Successful Survival Strategies?
PLoS One. 2016;11:e0150614.
PubMed Text format Abstract available

KLUGE M, Campos FS, Tavares M, de Amorim DB, et al
Metagenomic Survey of Viral Diversity Obtained from Feces of Subantarctic and South American Fur Seals.
PLoS One. 2016;11:e0151921.
PubMed Text format Abstract available

LOIBNER M, Buzina W, Viertler C, Groelz D, et al
Pathogen Inactivating Properties and Increased Sensitivity in Molecular Diagnostics by PAXgene, a Novel Non-Crosslinking Tissue Fixative.
PLoS One. 2016;11:e0151383.
PubMed Text format Abstract available

NIKOLAYEVSKYY V, Trovato A, Broda A, Borroni E, et al
MIRU-VNTR Genotyping of Mycobacterium tuberculosis Strains Using QIAxcel Technology: A Multicentre Evaluation Study.
PLoS One. 2016;11:e0149435.
PubMed Text format Abstract available

GARRIDO-SANZ D, Meier-Kolthoff JP, Goker M, Martin M, et al
Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex.
PLoS One. 2016;11:e0150183.
PubMed Text format Abstract available

SHOWMAKER KC, Bednarova A, Gresham C, Hsu CY, et al
Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois).
PLoS One. 2016;11:e0147197.
PubMed Text format Abstract available

LI BT, Lou E, Hsu M, Yu HA, et al
Serum Biomarkers Associated with Clinical Outcomes Fail to Predict Brain Metastases in Patients with Stage IV Non-Small Cell Lung Cancers.
PLoS One. 2016;11:e0146063.
PubMed Text format Abstract available

KAZYAK DC, Hilderbrand RH, King TL, Keller SR, et al
Hiding in Plain Sight: A Case for Cryptic Metapopulations in Brook Trout (Salvelinus fontinalis).
PLoS One. 2016;11:e0146295.
PubMed Text format Abstract available

CHOO SW, Dutta A, Wong GJ, Wee WY, et al
Comparative Genomic Analysis Reveals a Possible Novel Non-Tuberculous Mycobacterium Species with High Pathogenic Potential.
PLoS One. 2016;11:e0150413.
PubMed Text format Abstract available

WANG W, Zhang K, Deng D, Zhang YN, et al
Genetic Diversity of Daphnia pulex in the Middle and Lower Reaches of the Yangtze River.
PLoS One. 2016;11:e0152436.
PubMed Text format Abstract available

BUSTAMANTE E, Burquez A, Scheinvar E, Eguiarte LE, et al
Population Genetic Structure of a Widespread Bat-Pollinated Columnar Cactus.
PLoS One. 2016;11:e0152329.
PubMed Text format Abstract available

SHEPHERD LD, de Lange PJ, Cox S, McLenachan PA, et al
Evidence of a Strong Domestication Bottleneck in the Recently Cultivated New Zealand Endemic Root Crop, Arthropodium cirratum (Asparagaceae).
PLoS One. 2016;11:e0152455.
PubMed Text format Abstract available

SZCZECINSKA M, Sramko G, Wolosz K, Sawicki J, et al
Genetic Diversity and Population Structure of the Rare and Endangered Plant Species Pulsatilla patens (L.) Mill in East Central Europe.
PLoS One. 2016;11:e0151730.
PubMed Text format Abstract available

SOUTHEY BR, Zhu P, Carr-Markell MK, Liang ZS, et al
Characterization of Genomic Variants Associated with Scout and Recruit Behavioral Castes in Honey Bees Using Whole-Genome Sequencing.
PLoS One. 2016;11:e0146430.
PubMed Text format Abstract available

TALHOUK A, Kommoss S, Mackenzie R, Cheung M, et al
Single-Patient Molecular Testing with NanoString nCounter Data Using a Reference-Based Strategy for Batch Effect Correction.
PLoS One. 2016;11:e0153844.
PubMed Text format Abstract available

WALLACE J, Hu R, Mosbruger TL, Dahlem TJ, et al
Genome-Wide CRISPR-Cas9 Screen Identifies MicroRNAs That Regulate Myeloid Leukemia Cell Growth.
PLoS One. 2016;11:e0153689.
PubMed Text format Abstract available

VAL S, Poley M, Brown K, Choi R, et al
Proteomic Characterization of Middle Ear Fluid Confirms Neutrophil Extracellular Traps as a Predominant Innate Immune Response in Chronic Otitis Media.
PLoS One. 2016;11:e0152865.
PubMed Text format Abstract available

MOHAN V, Gupta S, Thomas S, Mickey H, et al
Tomato Fruits Show Wide Phenomic Diversity but Fruit Developmental Genes Show Low Genomic Diversity.
PLoS One. 2016;11:e0152907.
PubMed Text format Abstract available

DOS SANTOS JP, Vasconcellos RC, Pires LP, Balestre M, et al
Inclusion of Dominance Effects in the Multivariate GBLUP Model.
PLoS One. 2016;11:e0152045.
PubMed Text format Abstract available

BESSA-SILVA AR, Vallinoto M, Sodre D, da Cunha DB, et al
Patterns of Genetic Variability in Island Populations of the Cane Toad (Rhinella marina) from the Mouth of the Amazon.
PLoS One. 2016;11:e0152492.
PubMed Text format Abstract available

RANAWARE PB, Mishra A, Vijayakumar P, Gandhale PN, et al
Genome Wide Host Gene Expression Analysis in Chicken Lungs Infected with Avian Influenza Viruses.
PLoS One. 2016;11:e0153671.
PubMed Text format Abstract available

SHARPE RM, Koepke T, Harper A, Grimes J, et al
CisSERS: Customizable In Silico Sequence Evaluation for Restriction Sites.
PLoS One. 2016;11:e0152404.
PubMed Text format Abstract available

DRYGALA F, Korablev N, Ansorge H, Fickel J, et al
Homogenous Population Genetic Structure of the Non-Native Raccoon Dog (Nyctereutes procyonoides) in Europe as a Result of Rapid Population Expansion.
PLoS One. 2016;11:e0153098.
PubMed Text format Abstract available

HOU D, Chen X, Zhang LK
Proteomic Analysis of Mamestra Brassicae Nucleopolyhedrovirus Progeny Virions from Two Different Hosts.
PLoS One. 2016;11:e0153365.
PubMed Text format Abstract available

KATOLIKOVA M, Khaitov V, Vainola R, Gantsevich M, et al
Genetic, Ecological and Morphological Distinctness of the Blue Mussels Mytilus trossulus Gould and M. edulis L. in the White Sea.
PLoS One. 2016;11:e0152963.
PubMed Text format Abstract available

HIEMENZ MC, Kadauke S, Lieberman DB, Roth DB, et al
Building a Robust Tumor Profiling Program: Synergy between Next-Generation Sequencing and Targeted Single-Gene Testing.
PLoS One. 2016;11:e0152851.
PubMed Text format Abstract available

KIKUTAKE C, Yahara K
Identification of Epigenetic Biomarkers of Lung Adenocarcinoma through Multi-Omics Data Analysis.
PLoS One. 2016;11:e0152918.
PubMed Text format Abstract available

OKERBERG ES, Hainley A, Brown H, Aban A, et al
Identification of a Tumor Specific, Active-Site Mutation in Casein Kinase 1alpha by Chemical Proteomics.
PLoS One. 2016;11:e0152934.
PubMed Text format Abstract available

LIAO Y, Zhang Y, He L, Wang J, et al
Temporal and Spatial Analysis of Neural Tube Defects and Detection of Geographical Factors in Shanxi Province, China.
PLoS One. 2016;11:e0150332.
PubMed Text format Abstract available

HAO Q, Du P, Zhang W, Hou X, et al
Genomic Characteristics of Chinese Borrelia burgdorferi Isolates.
PLoS One. 2016;11:e0153149.
PubMed Text format Abstract available

SERAPHIN MN, Lauzardo M, Doggett RT, Zabala J, et al
Spatiotemporal Clustering of Mycobacterium tuberculosis Complex Genotypes in Florida: Genetic Diversity Segregated by Country of Birth.
PLoS One. 2016;11:e0153575.
PubMed Text format Abstract available

PRAKASH S, Kuang SQ, Regalado E, Guo D, et al
Recurrent Rare Genomic Copy Number Variants and Bicuspid Aortic Valve Are Enriched in Early Onset Thoracic Aortic Aneurysms and Dissections.
PLoS One. 2016;11:e0153543.
PubMed Text format Abstract available

HERNANDEZ D, Casane D, Chevalier-Monteagudo P, Bernatchez L, et al
Go West: A One Way Stepping-Stone Dispersion Model for the Cavefish Lucifuga dentata in Western Cuba.
PLoS One. 2016;11:e0153545.
PubMed Text format Abstract available

KWON SG, Hwang JH, Park da H, Kim TW, et al
Identification of Differentially Expressed Genes Associated with Litter Size in Berkshire Pig Placenta.
PLoS One. 2016;11:e0153311.
PubMed Text format Abstract available

RUGGERI P, Splendiani A, Occhipinti G, Fioravanti T, et al
Biocomplexity in Populations of European Anchovy in the Adriatic Sea.
PLoS One. 2016;11:e0153061.
PubMed Text format Abstract available

TOMASCHEK F, Higgins PG, Stefanik D, Wisplinghoff H, et al
Head-to-Head Comparison of Two Multi-Locus Sequence Typing (MLST) Schemes for Characterization of Acinetobacter baumannii Outbreak and Sporadic Isolates.
PLoS One. 2016;11:e0153014.
PubMed Text format Abstract available

KOLMEDER CA, Salojarvi J, Ritari J, de Been M, et al
Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults.
PLoS One. 2016;11:e0153294.
PubMed Text format Abstract available

WEN Y, Alshikho MJ, Herbert MR
Pathway Network Analyses for Autism Reveal Multisystem Involvement, Major Overlaps with Other Diseases and Convergence upon MAPK and Calcium Signaling.
PLoS One. 2016;11:e0153329.
PubMed Text format Abstract available

AN F, Chen T, Stephanie DM, Li K, et al
Domestication Syndrome Is Investigated by Proteomic Analysis between Cultivated Cassava (Manihot esculenta Crantz) and Its Wild Relatives.
PLoS One. 2016;11:e0152154.
PubMed Text format Abstract available

WEISZENSTEIN M, Pavlikova N, Elkalaf M, Halada P, et al
The Effect of Pericellular Oxygen Levels on Proteomic Profile and Lipogenesis in 3T3-L1 Differentiated Preadipocytes Cultured on Gas-Permeable Cultureware.
PLoS One. 2016;11:e0152382.
PubMed Text format Abstract available

BORDOLOI NK, Bhagowati P, Chaudhuri MK, Mukherjee AK, et al
Proteomics and Metabolomics Analyses to Elucidate the Desulfurization Pathway of Chelatococcus sp.
PLoS One. 2016;11:e0153547.
PubMed Text format Abstract available

LE HT, Angotzi AR, Ebbesson LO, Karlsen O, et al
The Ontogeny and Brain Distribution Dynamics of the Appetite Regulators NPY, CART and pOX in Larval Atlantic Cod (Gadus morhua L.).
PLoS One. 2016;11:e0153743.
PubMed Text format Abstract available

LIU Y, Bouhenni RA, Dufresne CP, Semba RD, et al
Differential Expression of Vitreous Proteins in Young and Mature New Zealand White Rabbits.
PLoS One. 2016;11:e0153560.
PubMed Text format Abstract available

YERGEAU E, Masson L, Elias M, Xiang S, et al
Comparison of Methods to Identify Pathogens and Associated Virulence Functional Genes in Biosolids from Two Different Wastewater Treatment Facilities in Canada.
PLoS One. 2016;11:e0153554.
PubMed Text format Abstract available

MARION T, Elbahesh H, Thomas PG, DeVincenzo JP, et al
Respiratory Mucosal Proteome Quantification in Human Influenza Infections.
PLoS One. 2016;11:e0153674.
PubMed Text format Abstract available

CACIOPPO CN, Chandler AE, Towne MC, Beggs AH, et al
Expectation versus Reality: The Impact of Utility on Emotional Outcomes after Returning Individualized Genetic Research Results in Pediatric Rare Disease Research, a Qualitative Interview Study.
PLoS One. 2016;11:e0153597.
PubMed Text format Abstract available

THERIAULT G, Michael P, Nkongolo K
Comprehensive Transcriptome Analysis of Response to Nickel Stress in White Birch (Betula papyrifera).
PLoS One. 2016;11:e0153762.
PubMed Text format Abstract available

PEDERSEN MK, Andersen AB, Andersen PH, Svensson E, et al
Occupational Tuberculosis in Denmark through 21 Years Analysed by Nationwide Genotyping.
PLoS One. 2016;11:e0153668.
PubMed Text format Abstract available

BLATTMANN P, Heusel M, Aebersold R
SWATH2stats: An R/Bioconductor Package to Process and Convert Quantitative SWATH-MS Proteomics Data for Downstream Analysis Tools.
PLoS One. 2016;11:e0153160.
PubMed Text format Abstract available

LIM D, Strucken EM, Choi BH, Chai HH, et al
Genomic Footprints in Selected and Unselected Beef Cattle Breeds in Korea.
PLoS One. 2016;11:e0151324.
PubMed Text format Abstract available

BARENHOLZ U, Keren L, Segal E, Milo R, et al
A Minimalistic Resource Allocation Model to Explain Ubiquitous Increase in Protein Expression with Growth Rate.
PLoS One. 2016;11:e0153344.
PubMed Text format Abstract available

QIAN B, Xue L, Huang H
Liver Transcriptome Analysis of the Large Yellow Croaker (Larimichthys crocea) during Fasting by Using RNA-Seq.
PLoS One. 2016;11:e0150240.
PubMed Text format Abstract available

CHEN J, Zhou A, Xie S, Wang C, et al
Comparative Proteomic Identification of Mature and Immature Sperm in the Catfish Cranoglanis bouderius.
PLoS One. 2016;11:e0151254.
PubMed Text format Abstract available

GOMPERT Z
A Continuous Correlated Beta Process Model for Genetic Ancestry in Admixed Populations.
PLoS One. 2016;11:e0151047.
PubMed Text format Abstract available

PICHAT C, Couvin D, Carret G, Fredenucci I, et al
Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhone Alpes Region, France.
PLoS One. 2016;11:e0153580.
PubMed Text format Abstract available

ALTMAIER E, Menni C, Heier M, Meisinger C, et al
The Pharmacogenetic Footprint of ACE Inhibition: A Population-Based Metabolomics Study.
PLoS One. 2016;11:e0153163.
PubMed Text format Abstract available

ARTEAGA A, Pyron RA, Penafiel N, Romero-Barreto P, et al
Comparative Phylogeography Reveals Cryptic Diversity and Repeated Patterns of Cladogenesis for Amphibians and Reptiles in Northwestern Ecuador.
PLoS One. 2016;11:e0151746.
PubMed Text format Abstract available

SELWYN JD, Hogan JD, Downey-Wall AM, Gurski LM, et al
Kin-Aggregations Explain Chaotic Genetic Patchiness, a Commonly Observed Genetic Pattern, in a Marine Fish.
PLoS One. 2016;11:e0153381.
PubMed Text format Abstract available

MANS J, Armah GE, Steele AD, Taylor MB, et al
Norovirus Epidemiology in Africa: A Review.
PLoS One. 2016;11:e0146280.
PubMed Text format Abstract available

FUMIAN TM, da Silva Ribeiro de Andrade J, Leite JP, Miagostovich MP, et al
Norovirus Recombinant Strains Isolated from Gastroenteritis Outbreaks in Southern Brazil, 2004-2011.
PLoS One. 2016;11:e0145391.
PubMed Text format Abstract available

LIM KL, Hewitt J, Sitabkhan A, Eden JS, et al
A Multi-Site Study of Norovirus Molecular Epidemiology in Australia and New Zealand, 2013-2014.
PLoS One. 2016;11:e0145254.
PubMed Text format Abstract available

ALLEN DJ, Trainor E, Callaghan A, O'Brien SJ, et al
Early Detection of Epidemic GII-4 Norovirus Strains in UK and Malawi: Role of Surveillance of Sporadic Acute Gastroenteritis in Anticipating Global Epidemics.
PLoS One. 2016;11:e0146972.
PubMed Text format Abstract available

NEELY BA, Wilkins CE, Marlow LA, Malyarenko D, et al
Proteotranscriptomic Analysis Reveals Stage Specific Changes in the Molecular Landscape of Clear-Cell Renal Cell Carcinoma.
PLoS One. 2016;11:e0154074.
PubMed Text format Abstract available

LIN Q, Luo W, Wan S, Gao Z, et al
De Novo Transcriptome Analysis of Two Seahorse Species (Hippocampus erectus and H. mohnikei) and the Development of Molecular Markers for Population Genetics.
PLoS One. 2016;11:e0154096.
PubMed Text format Abstract available

LEE SY, Kim GH, Yun SH, Choi CW, et al
Proteogenomic Characterization of Monocyclic Aromatic Hydrocarbon Degradation Pathways in the Aniline-Degrading Bacterium Burkholderia sp. K24.
PLoS One. 2016;11:e0154233.
PubMed Text format Abstract available

SINGH S, Dubey VK
Quantitative Proteome Analysis of Leishmania donovani under Spermidine Starvation.
PLoS One. 2016;11:e0154262.
PubMed Text format Abstract available

LIN G, Chai J, Yuan S, Mai C, et al
VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams.
PLoS One. 2016;11:e0154315.
PubMed Text format Abstract available

LI G, Reisig D, Miao J, Gould F, et al
Frequency of Cry1F Non-Recessive Resistance Alleles in North Carolina Field Populations of Spodoptera frugiperda (Lepidoptera: Noctuidae).
PLoS One. 2016;11:e0154492.
PubMed Text format Abstract available

KIM J, Ye A
Phylogenetic and Epigenetic Footprinting of the Putative Enhancers of the Peg3 Domain.
PLoS One. 2016;11:e0154216.
PubMed Text format Abstract available

YAMAGISHI J, Sato Y, Shinozaki N, Ye B, et al
Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes.
PLoS One. 2016;11:e0154389.
PubMed Text format Abstract available

MOL JP, Pires SF, Chapeaurouge AD, Perales J, et al
Proteomic Profile of Brucella abortus-Infected Bovine Chorioallantoic Membrane Explants.
PLoS One. 2016;11:e0154209.
PubMed Text format Abstract available

HEINRITZ SN, Weiss E, Eklund M, Aumiller T, et al
Intestinal Microbiota and Microbial Metabolites Are Changed in a Pig Model Fed a High-Fat/Low-Fiber or a Low-Fat/High-Fiber Diet.
PLoS One. 2016;11:e0154329.
PubMed Text format Abstract available

COOKE GM, Schlub TE, Sherwin WB, Ord TJ, et al
Understanding the Spatial Scale of Genetic Connectivity at Sea: Unique Insights from a Land Fish and a Meta-Analysis.
PLoS One. 2016;11:e0150991.
PubMed Text format Abstract available

SONI S, Raaijmakers AJ, Raaijmakers LM, Damen JM, et al
A Proteomics Approach to Identify New Putative Cardiac Intercalated Disk Proteins.
PLoS One. 2016;11:e0152231.
PubMed Text format Abstract available

GUO W, Feng X
OM-FBA: Integrate Transcriptomics Data with Flux Balance Analysis to Decipher the Cell Metabolism.
PLoS One. 2016;11:e0154188.
PubMed Text format Abstract available

ZHOU R, Kuang Y, Zhou J, Du X, et al
Nanonets Collect Cancer Secretome from Pericellular Space.
PLoS One. 2016;11:e0154126.
PubMed Text format Abstract available

ALVES DA SILVA AF, Machado FB, Pavarino EC, Biselli-Perico JM, et al
Trisomy 21 Alters DNA Methylation in Parent-of-Origin-Dependent and -Independent Manners.
PLoS One. 2016;11:e0154108.
PubMed Text format Abstract available

MIRANDA EA, Batalha-Filho H, Congrains C, Carvalho AF, et al
Phylogeography of Partamona rustica (Hymenoptera, Apidae), an Endemic Stingless Bee from the Neotropical Dry Forest Diagonal.
PLoS One. 2016;11:e0164441.
PubMed Text format Abstract available

BURTON LJ, Rivera M, Hawsawi O, Zou J, et al
Muscadine Grape Skin Extract Induces an Unfolded Protein Response-Mediated Autophagy in Prostate Cancer Cells: A TMT-Based Quantitative Proteomic Analysis.
PLoS One. 2016;11:e0164115.
PubMed Text format Abstract available

AZARIAN T, Maraqa NF, Cook RL, Johnson JA, et al
Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Neonatal Intensive Care Unit.
PLoS One. 2016;11:e0164397.
PubMed Text format Abstract available

KIM D, Jeon H, Ryu S, Koo S, et al
Proteomic Analysis of the Effect of Korean Red Ginseng in the Striatum of a Parkinson's Disease Mouse Model.
PLoS One. 2016;11:e0164906.
PubMed Text format Abstract available

ROVIRA-GRAELLS N, Aguilera-Simon S, Tinto-Font E, Cortes A, et al
New Assays to Characterise Growth-Related Phenotypes of Plasmodium falciparum Reveal Variation in Density-Dependent Growth Inhibition between Parasite Lines.
PLoS One. 2016;11:e0165358.
PubMed Text format Abstract available

LENNARD KS, Goosen RW, Blackburn JM
Bacterially-Associated Transcriptional Remodelling in a Distinct Genomic Subtype of Colorectal Cancer Provides a Plausible Molecular Basis for Disease Development.
PLoS One. 2016;11:e0166282.
PubMed Text format Abstract available

GUPTA S, Chaudhary K, Dhanda SK, Kumar R, et al
A Platform for Designing Genome-Based Personalized Immunotherapy or Vaccine against Cancer.
PLoS One. 2016;11:e0166372.
PubMed Text format Abstract available

COSKUN A, Baykal AT, Kazan D, Akgoz M, et al
Proteomic Analysis of Kidney Preservation Solutions Prior to Renal Transplantation.
PLoS One. 2016;11:e0168755.
PubMed Text format Abstract available

ZHANG F, Xu C, Ning L, Hu F, et al
Exploration of Serum Proteomic Profiling and Diagnostic Model That Differentiate Crohn's Disease and Intestinal Tuberculosis.
PLoS One. 2016;11:e0167109.
PubMed Text format Abstract available

WESTON C, Klobusicky J, Weston J, Connor J, et al
Aberrations in the Iron Regulatory Gene Signature Are Associated with Decreased Survival in Diffuse Infiltrating Gliomas.
PLoS One. 2016;11:e0166593.
PubMed Text format Abstract available

MARTIN P, McGovern A, Massey J, Schoenfelder S, et al
Identifying Causal Genes at the Multiple Sclerosis Associated Region 6q23 Using Capture Hi-C.
PLoS One. 2016;11:e0166923.
PubMed Text format Abstract available

CRISMAN TJ, Zelaya I, Laks DR, Zhao Y, et al
Identification of an Efficient Gene Expression Panel for Glioblastoma Classification.
PLoS One. 2016;11:e0164649.
PubMed Text format Abstract available

WU Y, Li YH, Yu SB, Li WG, et al
A Genome-Wide Transcriptional Analysis of Yeast-Hyphal Transition in Candida tropicalis by RNA-Seq.
PLoS One. 2016;11:e0166645.
PubMed Text format Abstract available

MISHRA PJ, Mishra PJ, Merlino G
Integrated Genomics Identifies miR-32/MCL-1 Pathway as a Critical Driver of Melanomagenesis: Implications for miR-Replacement and Combination Therapy.
PLoS One. 2016;11:e0165102.
PubMed Text format Abstract available

KORRODI-GREGORIO L, Soto-Cerrato V, Vitorino R, Fardilha M, et al
From Proteomic Analysis to Potential Therapeutic Targets: Functional Profile of Two Lung Cancer Cell Lines, A549 and SW900, Widely Studied in Pre-Clinical Research.
PLoS One. 2016;11:e0165973.
PubMed Text format Abstract available

SOUSA JD, Temudo MP, Hewlett BS, Camacho RJ, et al
Male Circumcision and the Epidemic Emergence of HIV-2 in West Africa.
PLoS One. 2016;11:e0166805.
PubMed Text format Abstract available

KANEMOTO K, Fukuta K, Kawai N, Tozawa K, et al
Genomic Landscape of Experimental Bladder Cancer in Rodents and Its Application to Human Bladder Cancer: Gene Amplification and Potential Overexpression of Cyp2a5/CYP2A6 Are Associated with the Invasive Phenotype.
PLoS One. 2016;11:e0167374.
PubMed Text format Abstract available

GHIANI A, D'Agostino N, Citterio S, Raiola A, et al
Impact of Wild Loci on the Allergenic Potential of Cultivated Tomato Fruits.
PLoS One. 2016;11:e0155803.
PubMed Text format Abstract available

IGUCHI S, Mizutani T, Hiramatsu K, Kikuchi K, et al
Rapid Acquisition of Linezolid Resistance in Methicillin-Resistant Staphylococcus aureus: Role of Hypermutation and Homologous Recombination.
PLoS One. 2016;11:e0155512.
PubMed Text format Abstract available

HORACIO AN, Silva-Costa C, Diamantino-Miranda J, Lopes JP, et al
Population Structure of Streptococcus pneumoniae Causing Invasive Disease in Adults in Portugal before PCV13 Availability for Adults: 2008-2011.
PLoS One. 2016;11:e0153602.
PubMed Text format Abstract available

PEREZ DEL MOLINO BERNAL IC, Lillebaek T, Pedersen MK, Martinez-Martinez L, et al
Genomic Diversity of Mycobacterium tuberculosis Complex Strains in Cantabria (Spain), a Moderate TB Incidence Setting.
PLoS One. 2016;11:e0157266.
PubMed Text format Abstract available

ROSSING K, Bosselmann HS, Gustafsson F, Zhang ZY, et al
Urinary Proteomics Pilot Study for Biomarker Discovery and Diagnosis in Heart Failure with Reduced Ejection Fraction.
PLoS One. 2016;11:e0157167.
PubMed Text format Abstract available

ZHANG M, Schmitt-Ulms G, Sato C, Xi Z, et al
Drug Repositioning for Alzheimer's Disease Based on Systematic 'omics' Data Mining.
PLoS One. 2016;11:e0168812.
PubMed Text format Abstract available

KORONA-GLOWNIAK I, Maj M, Siwiec R, Niedzielski A, et al
Molecular Epidemiology of Streptococcus pneumoniae Isolates from Children with Recurrent Upper Respiratory Tract Infections.
PLoS One. 2016;11:e0158909.
PubMed Text format Abstract available

LOHKAMP LN, Schinz M, Gehlhaar C, Guse K, et al
MGMT Promoter Methylation and BRAF V600E Mutations Are Helpful Markers to Discriminate Pleomorphic Xanthoastrocytoma from Giant Cell Glioblastoma.
PLoS One. 2016;11:e0156422.
PubMed Text format Abstract available

ZHANG C, Guo L, Chu X, Shen L, et al
Presence of the Panton-Valentine Leukocidin Genes in Methicillin-Resistant Staphylococcus aureus Is Associated with Severity and Clinical Outcome of Hospital-Acquired Pneumonia in a Single Center Study in China.
PLoS One. 2016;11:e0156704.
PubMed Text format Abstract available

PALANIAPPAN A, Ramar K, Ramalingam S
Computational Identification of Novel Stage-Specific Biomarkers in Colorectal Cancer Progression.
PLoS One. 2016;11:e0156665.
PubMed Text format Abstract available

KARDOUSH MI, Ward BJ, Ndao M
Identification of Candidate Serum Biomarkers for Schistosoma mansoni Infected Mice Using Multiple Proteomic Platforms.
PLoS One. 2016;11:e0154465.
PubMed Text format Abstract available

YONEYAMA T, Ohtsuki S, Honda K, Kobayashi M, et al
Identification of IGFBP2 and IGFBP3 As Compensatory Biomarkers for CA19-9 in Early-Stage Pancreatic Cancer Using a Combination of Antibody-Based and LC-MS/MS-Based Proteomics.
PLoS One. 2016;11:e0161009.
PubMed Text format Abstract available

KONG FY, Wei X, Zhou K, Hu W, et al
Bioinformatics Analysis Reveals Distinct Molecular Characteristics of Hepatitis B-Related Hepatocellular Carcinomas from Very Early to Advanced Barcelona Clinic Liver Cancer Stages.
PLoS One. 2016;11:e0158286.
PubMed Text format Abstract available

MORSE D, Webster W, Kalanon M, Langsley G, et al
Plasmodium falciparum Rab1A Localizes to Rhoptries in Schizonts.
PLoS One. 2016;11:e0158174.
PubMed Text format Abstract available

CEVIK O, Baykal AT, Sener A
Platelets Proteomic Profiles of Acute Ischemic Stroke Patients.
PLoS One. 2016;11:e0158287.
PubMed Text format Abstract available

KALLO G, Emri M, Varga Z, Ujhelyi B, et al
Changes in the Chemical Barrier Composition of Tears in Alzheimer's Disease Reveal Potential Tear Diagnostic Biomarkers.
PLoS One. 2016;11:e0158000.
PubMed Text format Abstract available

NAGAI-OKATANI C, Minamino N
Aberrant Glycosylation in the Left Ventricle and Plasma of Rats with Cardiac Hypertrophy and Heart Failure.
PLoS One. 2016;11:e0150210.
PubMed Text format Abstract available

LIN SY, Toyoda H, Kumada T, Liu HF, et al
Molecular Evolution and Phylodynamics of Acute Hepatitis B Virus in Japan.
PLoS One. 2016;11:e0157103.
PubMed Text format Abstract available

EYBPOOSH S, Bahrampour A, Karamouzian M, Azadmanesh K, et al
Spatio-Temporal History of HIV-1 CRF35_AD in Afghanistan and Iran.
PLoS One. 2016;11:e0156499.
PubMed Text format Abstract available

ARRUDA MB, Campagnari F, de Almeida TB, Couto-Fernandez JC, et al
Single Nucleotide Polymorphisms in Cellular Drug Transporters Are Associated with Intolerance to Antiretroviral Therapy in Brazilian HIV-1 Positive Individuals.
PLoS One. 2016;11:e0163170.
PubMed Text format Abstract available

HUNG WC, Wan TW, Kuo YC, Yamamoto T, et al
Molecular Evolutionary Pathways toward Two Successful Community-Associated but Multidrug-Resistant ST59 Methicillin-Resistant Staphylococcus aureus Lineages in Taiwan: Dynamic Modes of Mobile Genetic Element Salvages.
PLoS One. 2016;11:e0162526.
PubMed Text format Abstract available

FAKSRI K, Tan JH, Disratthakit A, Xia E, et al
Whole-Genome Sequencing Analysis of Serially Isolated Multi-Drug and Extensively Drug Resistant Mycobacterium tuberculosis from Thai Patients.
PLoS One. 2016;11:e0160992.
PubMed Text format Abstract available

DIENE SM, Francois P, Zbinden A, Entenza JM, et al
Comparative Genomics Analysis of Streptococcus tigurinus Strains Identifies Genetic Elements Specifically and Uniquely Present in Highly Virulent Strains.
PLoS One. 2016;11:e0160554.
PubMed Text format Abstract available

LIN PC, Yang YF, Tyan YC, Hsiao ES, et al
Identification of Phosphorylated Cyclin-Dependent Kinase 1 Associated with Colorectal Cancer Survival Using Label-Free Quantitative Analyses.
PLoS One. 2016;11:e0158844.
PubMed Text format Abstract available

SOO YEAN CY, Selva Raju K, Xavier R, Subramaniam S, et al
Molecular Detection of Methicillin-Resistant Staphylococcus aureus by Non-Protein Coding RNA-Mediated Monoplex Polymerase Chain Reaction.
PLoS One. 2016;11:e0158736.
PubMed Text format Abstract available

KANONIDIS EI, Roy MM, Deighton RF, Le Bihan T, et al
Protein Co-Expression Analysis as a Strategy to Complement a Standard Quantitative Proteomics Approach: Case of a Glioblastoma Multiforme Study.
PLoS One. 2016;11:e0161828.
PubMed Text format Abstract available

SAMIMI-RAD K, Rahimnia R, Sadeghi M, Malekpour SA, et al
Epidemic History of Hepatitis C Virus among Patients with Inherited Bleeding Disorders in Iran.
PLoS One. 2016;11:e0162492.
PubMed Text format Abstract available

HENDERSON MC, Hollingsworth AB, Gordon K, Silver M, et al
Integration of Serum Protein Biomarker and Tumor Associated Autoantibody Expression Data Increases the Ability of a Blood-Based Proteomic Assay to Identify Breast Cancer.
PLoS One. 2016;11:e0157692.
PubMed Text format Abstract available

SADEGHINEJAD L, Cvitkovitch DG, Siqueira WL, Santerre JP, et al
Triethylene Glycol Up-Regulates Virulence-Associated Genes and Proteins in Streptococcus mutans.
PLoS One. 2016;11:e0165760.
PubMed Text format Abstract available

PAPADODIMA O, Moulos P, Koryllou A, Piroti G, et al
Modulation of Pathways Underlying Distinct Cell Death Mechanisms in Two Human Lung Cancer Cell Lines in Response to SN1 Methylating Agents Treatment.
PLoS One. 2016;11:e0160248.
PubMed Text format

January 2015

VAI S, Ghirotto S, Pilli E, Tassi F, et al
Genealogical relationships between early medieval and modern inhabitants of Piedmont.
PLoS One. 2015;10:e0116801.
PubMed Text format Abstract available

CHEN W, Bei Y, Li H
Genetic variation of the major histocompatibility complex (MHC class II B gene) in the threatened Hume's pheasant, Syrmaticus humiae.
PLoS One. 2015;10:e0116499.
PubMed Text format Abstract available

LIM SW, Tran TM, Abate AR
PCR-activated cell sorting for cultivation-free enrichment and sequencing of rare microbes.
PLoS One. 2015;10:e0113549.
PubMed Text format Abstract available

BOEHM JT, Waldman J, Robinson JD, Hickerson MJ, et al
Population genomics reveals seahorses (Hippocampus erectus) of the western mid-Atlantic coast to be residents rather than vagrants.
PLoS One. 2015;10:e0116219.
PubMed Text format Abstract available

TEWAWONG N, Suwannakarn K, Prachayangprecha S, Korkong S, et al
Molecular Epidemiology and Phylogenetic Analyses of Influenza B Virus in Thailand during 2010 to 2014.
PLoS One. 2015;10:e0116302.
PubMed Text format Abstract available

LI S, Zou Y, Wang X, Huang X, et al
Warfarin dosage response related pharmacogenetics in Chinese population.
PLoS One. 2015;10:e0116463.
PubMed Text format Abstract available

VOGL S, Lutz RW, Schonfelder G, Lutz WK, et al
CYP2C9 genotype vs. metabolic phenotype for individual drug dosing--a correlation analysis using flurbiprofen as probe drug.
PLoS One. 2015;10:e0120403.
PubMed Text format Abstract available

MAES E, Valkenborg D, Baggerman G, Willems H, et al
Determination of variation parameters as a crucial step in designing TMT-based clinical proteomics experiments.
PLoS One. 2015;10:e0120115.
PubMed Text format Abstract available

ZHANG C, Zhao H, Li J, Liu H, et al
The identification of specific methylation patterns across different cancers.
PLoS One. 2015;10:e0120361.
PubMed Text format Abstract available

CURCI PL, De Paola D, Danzi D, Vendramin GG, et al
Complete chloroplast genome of the multifunctional crop globe artichoke and comparison with other Asteraceae.
PLoS One. 2015;10:e0120589.
PubMed Text format Abstract available

WU Z, Tembrock LR, Ge S
Are differences in genomic data sets due to true biological variants or errors in genome assembly: an example from two chloroplast genomes.
PLoS One. 2015;10:e0118019.
PubMed Text format Abstract available

LINDNER MS, Renard BY
Metagenomic profiling of known and unknown microbes with microbeGPS.
PLoS One. 2015;10:e0117711.
PubMed Text format Abstract available

YAMANE C, Yamazaki T, Nakamura S, Matsuo J, et al
Amoebal endosymbiont Parachlamydia acanthamoebae Bn9 can grow in immortal human epithelial HEp-2 cells at low temperature; an in vitro model system to study chlamydial evolution.
PLoS One. 2015;10:e0116486.
PubMed Text format Abstract available

SCUMACI D, Trimboli F, Dell'Aquila L, Concolino A, et al
Proteomics-driven analysis of ovine whey colostrum.
PLoS One. 2015;10:e0117433.
PubMed Text format Abstract available

SAWHNEY S, Hood K, Shaw A, Braithwaite AW, et al
Alpha-enolase is upregulated on the cell surface and responds to plasminogen activation in mice expressing a 133p53alpha mimic.
PLoS One. 2015;10:e0116270.
PubMed Text format Abstract available

CUMMINGS MT, Joh RI, Motamedi M
PRIMED: PRIMEr database for deleting and tagging all fission and budding yeast genes developed using the open-source genome retrieval script (GRS).
PLoS One. 2015;10:e0116657.
PubMed Text format Abstract available

DENG Y, Gao L, Wang B, Guo X, et al
HPOSim: an R package for phenotypic similarity measure and enrichment analysis based on the human phenotype ontology.
PLoS One. 2015;10:e0115692.
PubMed Text format Abstract available

ZHANG L, Boeren S, Hageman JA, van Hooijdonk T, et al
Bovine milk proteome in the first 9 days: protein interactions in maturation of the immune and digestive system of the newborn.
PLoS One. 2015;10:e0116710.
PubMed Text format Abstract available

KAKUMANI PK, Chinnappan M, Singh AK, Malhotra P, et al
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21.
PLoS One. 2015;10:e0116988.
PubMed Text format Abstract available

NGUYEN HD, Jancic S, Meijer M, Tanney JB, et al
Application of the phylogenetic species concept to Wallemia sebi from house dust and indoor air revealed by multi-locus genealogical concordance.
PLoS One. 2015;10:e0120894.
PubMed Text format Abstract available

LIANG M, Yang X, Li H, Su S, et al
De novo transcriptome assembly of pummelo and molecular marker development.
PLoS One. 2015;10:e0120615.
PubMed Text format Abstract available

WANG F, Yang T, Burlyaeva M, Li L, et al
Genetic diversity of grasspea and its relative species revealed by SSR markers.
PLoS One. 2015;10:e0118542.
PubMed Text format Abstract available

MUNEER S, Ko CH, Soundararajan P, Manivnnan A, et al
Proteomic study related to vascular connections in watermelon scions grafted onto bottle-gourd rootstock under different light intensities.
PLoS One. 2015;10:e0120899.
PubMed Text format Abstract available

KOCARNIK JM, Park SL, Han J, Dumitrescu L, et al
Pleiotropic and Sex-Specific Effects of Cancer GWAS SNPs on Melanoma Risk in the Population Architecture Using Genomics and Epidemiology (PAGE) Study.
PLoS One. 2015;10:e0120491.
PubMed Text format Abstract available

ZHAO J, Li H, Fu S, Chen B, et al
An iTRAQ-based proteomics approach to clarify the molecular physiology of somatic embryo development in Prince Rupprecht's larch (Larix principis-rupprechtii Mayr).
PLoS One. 2015;10:e0119987.
PubMed Text format Abstract available

HADAS L, Hermon D, Boldo A, Arieli G, et al
Wild gazelles of the southern Levant: genetic profiling defines new conservation priorities.
PLoS One. 2015;10:e0116401.
PubMed Text format Abstract available

PINHEIRO HT, Mazzei E, Moura RL, Amado-Filho GM, et al
Fish biodiversity of the Vitoria-Trindade Seamount Chain, southwestern Atlantic: an updated database.
PLoS One. 2015;10:e0118180.
PubMed Text format Abstract available

FERNANDES V, Triska P, Pereira JB, Alshamali F, et al
Genetic stratigraphy of key demographic events in Arabia.
PLoS One. 2015;10:e0118625.
PubMed Text format Abstract available

LI J, Chanrion M, Sawey E, Wang T, et al
Reciprocal interaction of Wnt and RXR-alpha pathways in hepatocyte development and hepatocellular carcinoma.
PLoS One. 2015;10:e0118480.
PubMed Text format Abstract available

YANG M, Wu Y, Jin S, Hou J, et al
Flower bud transcriptome analysis of Sapium sebiferum (Linn.) Roxb. and primary investigation of drought induced flowering: pathway construction and G-quadruplex prediction based on transcriptome.
PLoS One. 2015;10:e0118479.
PubMed Text format Abstract available

HASHIZUME O, Yamanashi H, Taketo MM, Nakada K, et al
A Specific Nuclear DNA Background Is Required for High Frequency Lymphoma Development in Transmitochondrial Mice with G13997A mtDNA.
PLoS One. 2015;10:e0118561.
PubMed Text format Abstract available

CHEN L, Zhai L, Li Y, Li N, et al
Development of gel-filter method for high enrichment of low-molecular weight proteins from serum.
PLoS One. 2015;10:e0115862.
PubMed Text format Abstract available

AMORIM CE, Acuna-Alonzo V, Salzano FM, Bortolini MC, et al
Differing evolutionary histories of the ACTN3*R577X polymorphism among the major human geographic groups.
PLoS One. 2015;10:e0115449.
PubMed Text format Abstract available

OSINGA HM, Marshall JA
Adaptive topographies and equilibrium selection in an evolutionary game.
PLoS One. 2015;10:e0116307.
PubMed Text format Abstract available

SOETENS LC, van Benthem BH, Urbanus A, Cremer J, et al
Ongoing transmission of hepatitis B virus in rural parts of the Netherlands, 2009-2013.
PLoS One. 2015;10:e0117703.
PubMed Text format Abstract available

PHAM PH, Shipman WJ, Erikson GA, Schork NJ, et al
Scripps Genome ADVISER: Annotation and Distributed Variant Interpretation SERver.
PLoS One. 2015;10:e0116815.
PubMed Text format Abstract available

JOO NS, Evans IA, Cho HJ, Park IH, et al
Proteomic analysis of pure human airway gland mucus reveals a large component of protective proteins.
PLoS One. 2015;10:e0116756.
PubMed Text format Abstract available

HEISEL T, Podgorski H, Staley CM, Knights D, et al
Complementary amplicon-based genomic approaches for the study of fungal communities in humans.
PLoS One. 2015;10:e0116705.
PubMed Text format Abstract available

SHARIVKIN R, Walker MD, Soen Y
Functional proteomics screen enables enrichment of distinct cell types from human pancreatic islets.
PLoS One. 2015;10:e0115100.
PubMed Text format Abstract available

PI B, Yu D, Dai F, Song X, et al
A Genomics Based Discovery of Secondary Metabolite Biosynthetic Gene Clusters in Aspergillus ustus.
PLoS One. 2015;10:e0116089.
PubMed Text format Abstract available

HUSEMANN M, Habel JC, Namkung S, Hochkirch A, et al
Molecular evidence for an old world origin of Galapagos and Caribbean band-winged grasshoppers (Acrididae: Oedipodinae: Sphingonotus).
PLoS One. 2015;10:e0118208.
PubMed Text format Abstract available

FELAPPI JF, Vieira RC, Fagundes NJ, Verrastro LV, et al
So far away, yet so close: strong genetic structure in Homonota uruguayensis (Squamata, Phyllodactylidae), a species with restricted geographic distribution in the Brazilian and Uruguayan Pampas.
PLoS One. 2015;10:e0118162.
PubMed Text format Abstract available

WU QH, Chen YX, Zhou SH, Fu L, et al
High-density genetic linkage map construction and QTL mapping of grain shape and size in the wheat population Yanda1817 x Beinong6.
PLoS One. 2015;10:e0118144.
PubMed Text format Abstract available

ROY CHOWDHURY P, Charles IG, Djordjevic SP
A role for Tn6029 in the evolution of the complex antibiotic resistance gene loci in genomic island 3 in enteroaggregative hemorrhagic Escherichia coli O104:H4.
PLoS One. 2015;10:e0115781.
PubMed Text format Abstract available

YIN L, Xie Y, Yin S, Lv X, et al
The S-Nitrosylation Status of PCNA Localized in Cytosol Impacts the Apoptotic Pathway in a Parkinson's Disease Paradigm.
PLoS One. 2015;10:e0117546.
PubMed Text format Abstract available

WANG W, Du ZQ, Cheng B, Wang Y, et al
Expression profiling of preadipocyte microRNAs by deep sequencing on chicken lines divergently selected for abdominal fatness.
PLoS One. 2015;10:e0117843.
PubMed Text format Abstract available

PAL A, Banerjee R, Mondal UK, Mukhopadhyay S, et al
Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly.
PLoS One. 2015;10:e0118245.
PubMed Text format Abstract available

SUN Z, Zhang W, Guo C, Yang X, et al
Comparative genomic analysis of 45 type strains of the genus Bifidobacterium: a snapshot of its genetic diversity and evolution.
PLoS One. 2015;10:e0117912.
PubMed Text format Abstract available

GAUCI PJ, McAllister J, Mitchell IR, Boyle DB, et al
Genomic characterisation of three Mapputta group viruses, a serogroup of Australian and Papua New Guinean bunyaviruses associated with human disease.
PLoS One. 2015;10:e0116561.
PubMed Text format Abstract available

ZHANG Y, Zhao P, Dong Z, Wang D, et al
Comparative proteome analysis of multi-layer cocoon of the silkworm, Bombyx mori.
PLoS One. 2015;10:e0123403.
PubMed Text format Abstract available

MAHAUAD-FERNANDEZ WD, Borcherding NC, Zhang W, Okeoma CM, et al
Bone Marrow Stromal Antigen 2 (BST-2) DNA Is Demethylated in Breast Tumors and Breast Cancer Cells.
PLoS One. 2015;10:e0123931.
PubMed Text format Abstract available

PIRONE-DAVIES C, Hoffmann M, Roberts RJ, Muruvanda T, et al
Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars.
PLoS One. 2015;10:e0123639.
PubMed Text format Abstract available

DODSON JJ, Bourret A, Barrette MF, Turgeon J, et al
Intraspecific genetic admixture and the morphological diversification of an estuarine fish population complex.
PLoS One. 2015;10:e0123172.
PubMed Text format Abstract available

LOESCH K, Galaviz S, Hamoui Z, Clanton R, et al
Functional genomics screening utilizing mutant mouse embryonic stem cells identifies novel radiation-response genes.
PLoS One. 2015;10:e0120534.
PubMed Text format Abstract available

NGEOW YF, Wong YL, Tan JL, Hong KW, et al
Identification of new genomospecies in the Mycobacterium terrae complex.
PLoS One. 2015;10:e0120789.
PubMed Text format Abstract available

MORRISON A, Chekaluk Y, Bacares R, Ladanyi M, et al
BAP1 missense mutation c.2054 A>T (p.E685V) completely disrupts normal splicing through creation of a novel 5' splice site in a human mesothelioma cell line.
PLoS One. 2015;10:e0119224.
PubMed Text format Abstract available

WINNIER DA, Fourcaudot M, Norton L, Abdul-Ghani MA, et al
Transcriptomic Identification of ADH1B as a Novel Candidate Gene for Obesity and Insulin Resistance in Human Adipose Tissue in Mexican Americans from the Veterans Administration Genetic Epidemiology Study (VAGES).
PLoS One. 2015;10:e0119941.
PubMed Text format Abstract available

DEMANCHE C, Deville M, Michaux J, Barriel V, et al
What do Pneumocystis organisms tell us about the phylogeography of their hosts? The case of the woodmouse Apodemus sylvaticus in continental Europe and western Mediterranean islands.
PLoS One. 2015;10:e0120839.
PubMed Text format Abstract available

HOLZKNECHT BJ, Franck KT, Nielsen RT, Bottiger B, et al
Sequence analysis of the capsid gene during a genotype II.4 dominated norovirus season in one university hospital: identification of possible transmission routes.
PLoS One. 2015;10:e0115331.
PubMed Text format Abstract available

CALDERON R, Hernandez CL, Cuesta P, Dugoujon JM, et al
Surnames and Y-chromosomal markers reveal low relationships in Southern Spain.
PLoS One. 2015;10:e0123098.
PubMed Text format Abstract available

SHIBAYAMA J, Yuzyuk TN, Cox J, Makaju A, et al
Metabolic Remodeling in Moderate Synchronous versus Dyssynchronous Pacing-Induced Heart Failure: Integrated Metabolomics and Proteomics Study.
PLoS One. 2015;10:e0118974.
PubMed Text format Abstract available

BIANCO E, Nevado B, Ramos-Onsins SE, Perez-Enciso M, et al
A deep catalog of autosomal single nucleotide variation in the pig.
PLoS One. 2015;10:e0118867.
PubMed Text format Abstract available

SEOK J
Evidence-based translation for the genomic responses of murine models for the study of human immunity.
PLoS One. 2015;10:e0118017.
PubMed Text format Abstract available

CHRISTENSEN B, Ludvigsen M, Nellemann B, Kopchick JJ, et al
Serum Proteomic Changes after Randomized Prolonged Erythropoietin Treatment and/or Endurance Training: Detection of Novel Biomarkers.
PLoS One. 2015;10:e0117119.
PubMed Text format Abstract available

RUGMAN-JONES PF, Seybold SJ, Graves AD, Stouthamer R, et al
Phylogeography of the walnut twig beetle, Pityophthorus juglandis, the vector of thousand cankers disease in North American walnut trees.
PLoS One. 2015;10:e0118264.
PubMed Text format Abstract available

LEE MY, Huang CH, Kuo CJ, Lin CL, et al
Clinical proteomics identifies urinary CD14 as a potential biomarker for diagnosis of stable coronary artery disease.
PLoS One. 2015;10:e0117169.
PubMed Text format Abstract available

CHAUDHARY N, Sharma AK, Agarwal P, Gupta A, et al
16S classifier: a tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets.
PLoS One. 2015;10:e0116106.
PubMed Text format Abstract available

ZHENG HF, Rong JJ, Liu M, Han F, et al
Performance of genotype imputation for low frequency and rare variants from the 1000 genomes.
PLoS One. 2015;10:e0116487.
PubMed Text format Abstract available

NEWMAN SJ, Easteal S
A new metric of inclusive fitness predicts the human mortality profile.
PLoS One. 2015;10:e0117019.
PubMed Text format Abstract available

DICKEY AM, Kumar V, Hoddle MS, Funderburk JE, et al
The Scirtothrips dorsalis Species Complex: Endemism and Invasion in a Global Pest.
PLoS One. 2015;10:e0123747.
PubMed Text format Abstract available

RAGGI L, Bitocchi E, Russi L, Marconi G, et al
Understanding Genetic Diversity and Population Structure of a Poa pratensis Worldwide Collection through Morphological, Nuclear and Chloroplast Diversity Analysis.
PLoS One. 2015;10:e0124709.
PubMed Text format Abstract available

KAWULOK J, Deorowicz S
CoMeta: classification of metagenomes using k-mers.
PLoS One. 2015;10:e0121453.
PubMed Text format Abstract available

SEJERSEN MH, Frost P, Hansen TB, Deutch SR, et al
Proteomics perspectives in rotator cuff research: a systematic review of gene expression and protein composition in human tendinopathy.
PLoS One. 2015;10:e0119974.
PubMed Text format Abstract available

R V S, Kumari P, Rupwate SD, Rajasekharan R, et al
Exploring triacylglycerol biosynthetic pathway in developing seeds of Chia (Salvia hispanica L.): a transcriptomic approach.
PLoS One. 2015;10:e0123580.
PubMed Text format Abstract available

CHIBA H, Nishide H, Uchiyama I
Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.
PLoS One. 2015;10:e0122802.
PubMed Text format Abstract available

WAN D, Wan Y, Hou X, Ren W, et al
De novo assembly and transcriptomic profiling of the grazing response in Stipa grandis.
PLoS One. 2015;10:e0122641.
PubMed Text format Abstract available

ZHA C, Jiang XH, Peng SF
iTRAQ-based quantitative proteomic analysis on S100 calcium binding protein A2 in metastasis of laryngeal cancer.
PLoS One. 2015;10:e0122322.
PubMed Text format Abstract available

SAXENA R, Gupta S, Singh K, Mitra K, et al
Proteomic Profiling of SupT1 Cells Reveal Modulation of Host Proteins by HIV-1 Nef Variants.
PLoS One. 2015;10:e0122994.
PubMed Text format Abstract available

HUNTER ME, Oyler-McCance SJ, Dorazio RM, Fike JA, et al
Environmental DNA (eDNA) sampling improves occurrence and detection estimates of invasive burmese pythons.
PLoS One. 2015;10:e0121655.
PubMed Text format Abstract available

WANG HF, Landrein S, Dong WP, Nie ZL, et al
Molecular phylogeny and biogeographic diversification of linnaeoideae (caprifoliaceae s. L.) disjunctly distributed in Eurasia, North America and Mexico.
PLoS One. 2015;10:e0116485.
PubMed Text format Abstract available

LI J, Zhao WG, Shen ZF, Yuan T, et al
Comparative proteome analysis of brown adipose tissue in obese C57BL/6J mice using iTRAQ-coupled 2D LC-MS/MS.
PLoS One. 2015;10:e0119350.
PubMed Text format Abstract available

ROBERTS T, Barratt J, Sandaradura I, Lee R, et al
Molecular epidemiology of imported cases of leishmaniasis in australia from 2008 to 2014.
PLoS One. 2015;10:e0119212.
PubMed Text format Abstract available

YAO Y, Zhang B, Dong CJ, Du Y, et al
Comparative proteomic and biochemical analyses reveal different molecular events occurring in the process of fiber initiation between wild-type allotetraploid cotton and its fuzzless-lintless mutant.
PLoS One. 2015;10:e0117049.
PubMed Text format Abstract available

ZHAO G, Li H, Zhao P, Cai W, et al
Comparative mitogenomics of the assassin bug genus Peirates (Hemiptera: Reduviidae: Peiratinae) reveal conserved mitochondrial genome organization of P. atromaculatus, P. fulvescens and P. turpis.
PLoS One. 2015;10:e0117862.
PubMed Text format Abstract available

IFTIKHAR S, Khan S, Anwar Z, Kamran M, et al
GenInfoGuard--a robust and distortion-free watermarking technique for genetic data.
PLoS One. 2015;10:e0117717.
PubMed Text format Abstract available

JIN J, Qin Q, Guo H, Liu S, et al
Effect of Pre-Stressing on the Acid-Stress Response in Bifidobacterium Revealed Using Proteomic and Physiological Approaches.
PLoS One. 2015;10:e0117702.
PubMed Text format Abstract available

MCCANN MR, Patel P, Frimpong A, Xiao Y, et al
Proteomic signature of the murine intervertebral disc.
PLoS One. 2015;10:e0117807.
PubMed Text format Abstract available

LIMA FE, Cibulski SP, Dos Santos HF, Teixeira TF, et al
Genomic characterization of novel circular ssDNA viruses from insectivorous bats in Southern Brazil.
PLoS One. 2015;10:e0118070.
PubMed Text format Abstract available

DING J, Zhao L, Chang Y, Zhao W, et al
Transcriptome sequencing and characterization of Japanese scallop Patinopecten yessoensis from different shell color lines.
PLoS One. 2015;10:e0116406.
PubMed Text format Abstract available

PARK MW, Kim KH, Kim EY, Lee SY, et al
Associations among Sebox and other MEGs and its effects on early embryogenesis.
PLoS One. 2015;10:e0115050.
PubMed Text format Abstract available

SKUNCA N, Dessimoz C
Phylogenetic profiling: how much input data is enough?
PLoS One. 2015;10:e0114701.
PubMed Text format Abstract available

LONG W, Zou X, Zhang X
Transcriptome analysis of canola (Brassica napus) under salt stress at the germination stage.
PLoS One. 2015;10:e0116217.
PubMed Text format Abstract available

ARIANI A, Di Baccio D, Romeo S, Lombardi L, et al
RNA sequencing of Populus x canadensis roots identifies key molecular mechanisms underlying physiological adaption to excess zinc.
PLoS One. 2015;10:e0117571.
PubMed Text format Abstract available

BISHOP BM, Juba ML, Devine MC, Barksdale SM, et al
Bioprospecting the American alligator (Alligator mississippiensis) host defense peptidome.
PLoS One. 2015;10:e0117394.
PubMed Text format Abstract available

BEAROFF F, Case LK, Krementsov DN, Wall EH, et al
Identification of genetic determinants of the sexual dimorphism in CNS autoimmunity.
PLoS One. 2015;10:e0117993.
PubMed Text format Abstract available

BALCELLS ME, Garcia P, Meza P, Pena C, et al
A First Insight on the Population Structure of Mycobacterium tuberculosis Complex as Studied by Spoligotyping and MIRU-VNTRs in Santiago, Chile.
PLoS One. 2015;10:e0118007.
PubMed Text format Abstract available

BETZER C, Movius AJ, Shi M, Gai WP, et al
Identification of synaptosomal proteins binding to monomeric and oligomeric alpha-synuclein.
PLoS One. 2015;10:e0116473.
PubMed Text format Abstract available

NEMIROVSKY SI, Cordoba M, Zaiat JJ, Completa SP, et al
Whole genome sequencing reveals a de novo SHANK3 mutation in familial autism spectrum disorder.
PLoS One. 2015;10:e0116358.
PubMed Text format Abstract available

CHANG JT, Yang CS, Chen YS, Chen BC, et al
Genome and infection characteristics of human parechovirus type 1: the interplay between viral infection and type I interferon antiviral system.
PLoS One. 2015;10:e0116158.
PubMed Text format Abstract available

YANG Y, Dong C, Yang S, Li X, et al
Physiological and proteomic adaptation of the alpine grass Stipa purpurea to a drought gradient.
PLoS One. 2015;10:e0117475.
PubMed Text format Abstract available

KIM JH, Ko YJ, Kim JY, Oh Y, et al
Genetic investigation of bisphosphonate-related osteonecrosis of jaw (BRONJ) via whole exome sequencing and bioinformatics.
PLoS One. 2015;10:e0118084.
PubMed Text format Abstract available

HATTORI M, Komatsu S, Noda H, Matsumoto Y, et al
Proteome Analysis of Watery Saliva Secreted by Green Rice Leafhopper, Nephotettix cincticeps.
PLoS One. 2015;10:e0123671.
PubMed Text format Abstract available

STEMMER M, Thumberger T, Del Sol Keyer M, Wittbrodt J, et al
CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.
PLoS One. 2015;10:e0124633.
PubMed Text format Abstract available

ALI B, Gill RA, Yang S, Gill MB, et al
Regulation of Cadmium-Induced Proteomic and Metabolic Changes by 5-Aminolevulinic Acid in Leaves of Brassica napus L.
PLoS One. 2015;10:e0123328.
PubMed Text format Abstract available

VEERAPPA AM, Vishweswaraiah S, Lingaiah K, Murthy M, et al
Global spectrum of copy number variations reveals genome organizational plasticity and proposes new migration routes.
PLoS One. 2015;10:e0121846.
PubMed Text format Abstract available

SAKA HA, Thompson JW, Chen YS, Dubois LG, et al
Chlamydia trachomatis Infection Leads to Defined Alterations to the Lipid Droplet Proteome in Epithelial Cells.
PLoS One. 2015;10:e0124630.
PubMed Text format Abstract available

DECARIS ML, Emson CL, Li K, Gatmaitan M, et al
Turnover rates of hepatic collagen and circulating collagen-associated proteins in humans with chronic liver disease.
PLoS One. 2015;10:e0123311.
PubMed Text format Abstract available

ZHANG J, Li C, Tang X, Lu Q, et al
High Concentrations of Atmospheric Ammonia Induce Alterations in the Hepatic Proteome of Broilers (Gallus gallus): An iTRAQ-Based Quantitative Proteomic Analysis.
PLoS One. 2015;10:e0123596.
PubMed Text format Abstract available

LEACH K, Kelly R, Cameron A, Montgomery WI, et al
Expertly validated models and phylogenetically-controlled analysis suggests responses to climate change are related to species traits in the order lagomorpha.
PLoS One. 2015;10:e0122267.
PubMed Text format Abstract available

ZUB KA, Sousa MM, Sarno A, Sharma A, et al
Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells.
PLoS One. 2015;10:e0119857.
PubMed Text format Abstract available

MA J, Kanakala S, He Y, Zhang J, et al
Transcriptome sequence analysis of an ornamental plant, Ananas comosus var. bracteatus, revealed the potential unigenes involved in terpenoid and phenylpropanoid biosynthesis.
PLoS One. 2015;10:e0119153.
PubMed Text format Abstract available

BAO K, Bostanci N, Selevsek N, Thurnheer T, et al
Quantitative proteomics reveal distinct protein regulations caused by Aggregatibacter actinomycetemcomitans within subgingival biofilms.
PLoS One. 2015;10:e0119222.
PubMed Text format Abstract available

YU GJ, Yin YL, Yu WH, Liu W, et al
Proteome exploration to provide a resource for the investigation of Ganoderma lucidum.
PLoS One. 2015;10:e0119439.
PubMed Text format Abstract available

VIJAY S, Rawal R, Kadian K, Raghavendra K, et al
Annotated differentially expressed salivary proteins of susceptible and insecticide-resistant mosquitoes of Anopheles stephensi.
PLoS One. 2015;10:e0119666.
PubMed Text format Abstract available

REGAN JF, Kamitaki N, Legler T, Cooper S, et al
A rapid molecular approach for chromosomal phasing.
PLoS One. 2015;10:e0118270.
PubMed Text format Abstract available

MENEZES RS, Brady SG, Carvalho AF, Del Lama MA, et al
Molecular phylogeny and historical biogeography of the neotropical swarm-founding social wasp genus Synoeca (Hymenoptera: Vespidae).
PLoS One. 2015;10:e0119151.
PubMed Text format Abstract available

WADA T, Iwamoto T, Tamaru A, Seto J, et al
Clonality and Micro-Diversity of a Nationwide Spreading Genotype of Mycobacterium tuberculosis in Japan.
PLoS One. 2015;10:e0118495.
PubMed Text format Abstract available

SOUFAN O, Kleftogiannis D, Kalnis P, Bajic VB, et al
DWFS: a wrapper feature selection tool based on a parallel genetic algorithm.
PLoS One. 2015;10:e0117988.
PubMed Text format Abstract available

MOUREAU G, Cook S, Lemey P, Nougairede A, et al
New insights into flavivirus evolution, taxonomy and biogeographic history, extended by analysis of canonical and alternative coding sequences.
PLoS One. 2015;10:e0117849.
PubMed Text format Abstract available

MBONGUE JC, Nicholas DA, Zhang K, Kim NS, et al
Induction of indoleamine 2, 3-dioxygenase in human dendritic cells by a cholera toxin B subunit-proinsulin vaccine.
PLoS One. 2015;10:e0118562.
PubMed Text format Abstract available

FARFAN ID, De La Fuente GN, Murray SC, Isakeit T, et al
Genome wide association study for drought, aflatoxin resistance, and important agronomic traits of maize hybrids in the sub-tropics.
PLoS One. 2015;10:e0117737.
PubMed Text format Abstract available

LORKIEWICZ W, Ploszaj T, Jedrychowska-Danska K, Zadzinska E, et al
Between the Baltic and Danubian Worlds: the genetic affinities of a Middle Neolithic population from central Poland.
PLoS One. 2015;10:e0118316.
PubMed Text format Abstract available

FONSECA FC, Firmino AA, de Macedo LL, Coelho RR, et al
Sugarcane giant borer transcriptome analysis and identification of genes related to digestion.
PLoS One. 2015;10:e0118231.
PubMed Text format Abstract available

ROMAND R, Ripp R, Poidevin L, Boeglin M, et al
Integrated annotation and analysis of in situ hybridization images using the ImAnno system: application to the ear and sensory organs of the fetal mouse.
PLoS One. 2015;10:e0118024.
PubMed Text format Abstract available

MAHAJAN S, Manetsch R, Merkler DJ, Stevens SM Jr, et al
Synthesis and evaluation of a novel adenosine-ribose probe for global-scale profiling of nucleoside and nucleotide-binding proteins.
PLoS One. 2015;10:e0115644.
PubMed Text format Abstract available

LIU X, Weidle K, Schrock K, Tonjes A, et al
Signatures of Natural Selection at the FTO (Fat Mass and Obesity Associated) Locus in Human Populations.
PLoS One. 2015;10:e0117093.
PubMed Text format Abstract available

STARLARD-DAVENPORT A, Orloff MS, Dhakal I, Penney RB, et al
Genotypic and allelic variability in CYP19A1 among populations of African and European ancestry.
PLoS One. 2015;10:e0117347.
PubMed Text format Abstract available

KUMAR D, Kirti PB
Transcriptomic and proteomic analyses of resistant host responses in Arachis diogoi challenged with late leaf spot pathogen, Phaeoisariopsis personata.
PLoS One. 2015;10:e0117559.
PubMed Text format Abstract available

LOPEZ A, Vera M, Planas M, Bouza C, et al
Conservation genetics of threatened Hippocampus guttulatus in vulnerable habitats in NW Spain: temporal and spatial stability of wild populations with flexible polygamous mating system in captivity.
PLoS One. 2015;10:e0117538.
PubMed Text format Abstract available

GITS-MUSELLI M, Peraldi MN, de Castro N, Delcey V, et al
New Short Tandem Repeat-Based Molecular Typing Method for Pneumocystis jirovecii Reveals Intrahospital Transmission between Patients from Different Wards.
PLoS One. 2015;10:e0125763.
PubMed Text format Abstract available

JIA G, Liu X, Schnable JC, Niu Z, et al
Microsatellite Variations of Elite Setaria Varieties Released during Last Six Decades in China.
PLoS One. 2015;10:e0125688.
PubMed Text format Abstract available

SADIQ MW, Uchida Y, Hoshi Y, Tachikawa M, et al
Validation of a P-Glycoprotein (P-gp) Humanized Mouse Model by Integrating Selective Absolute Quantification of Human MDR1, Mouse Mdr1a and Mdr1b Protein Expressions with In Vivo Functional Analysis for Blood-Brain Barrier Transport.
PLoS One. 2015;10:e0118638.
PubMed Text format Abstract available

JOHNSON SS, Chevrette MG, Ehlmann BL, Benison KC, et al
Insights from the metagenome of an acid salt lake: the role of biology in an extreme depositional environment.
PLoS One. 2015;10:e0122869.
PubMed Text format Abstract available

E Z, Zhang Y, Li T, Wang L, et al
Characterization of the Ubiquitin-Conjugating Enzyme Gene Family in Rice and Evaluation of Expression Profiles under Abiotic Stresses and Hormone Treatments.
PLoS One. 2015;10:e0122621.
PubMed Text format Abstract available

ZHANG M, Fu G, Lei T
Two urinary peptides associated closely with type 2 diabetes mellitus.
PLoS One. 2015;10:e0122950.
PubMed Text format Abstract available

WELINDER C, Pawlowski K, Sugihara Y, Yakovleva M, et al
A Protein Deep Sequencing Evaluation of Metastatic Melanoma Tissues.
PLoS One. 2015;10:e0123661.
PubMed Text format Abstract available

MARRA A, Mona S, Sa RM, D'Onghia G, et al
Population genetic history of Aristeus antennatus (Crustacea: Decapoda) in the Western and Central Mediterranean Sea.
PLoS One. 2015;10:e0117272.
PubMed Text format Abstract available

GU L, Robinson RA
Multiple proteases to localize oxidation sites.
PLoS One. 2015;10:e0116606.
PubMed Text format Abstract available

ZHOU Y, Kang L, Liao S, Pan Q, et al
Transcriptomic analysis reveals differential gene expressions for cell growth and functional secondary metabolites in induced autotetraploid of Chinese woad (Isatis indigotica Fort.).
PLoS One. 2015;10:e0116392.
PubMed Text format Abstract available

REWICZ T, Wattier R, Grabowski M, Rigaud T, et al
Out of the Black Sea: phylogeography of the invasive killer shrimp Dikerogammarus villosus across Europe.
PLoS One. 2015;10:e0118121.
PubMed Text format Abstract available

LI H, Yao W, Fu Y, Li S, et al
De novo assembly and discovery of genes that are involved in drought tolerance in Tibetan Sophora moorcroftiana.
PLoS One. 2015;10:e111054.
PubMed Text format Abstract available

YING Q, Ansong E, Diamond AM, Lu Z, et al
Quantitative proteomic analysis reveals that anti-cancer effects of selenium-binding protein 1 in vivo are associated with metabolic pathways.
PLoS One. 2015;10:e0126285.
PubMed Text format Abstract available

LEE JG, McKinney KQ, Lee YY, Chung HN, et al
A draft map of rhesus monkey tissue proteome for biomedical research.
PLoS One. 2015;10:e0126243.
PubMed Text format Abstract available

ZHANG Q, Zhu F, Liu L, Zheng CW, et al
Integrating transcriptome and genome re-sequencing data to identify key genes and mutations affecting chicken eggshell qualities.
PLoS One. 2015;10:e0125890.
PubMed Text format Abstract available

BANSAL SK, Gupta N, Sankhwar SN, Rajender S, et al
Differential Genes Expression between Fertile and Infertile Spermatozoa Revealed by Transcriptome Analysis.
PLoS One. 2015;10:e0127007.
PubMed Text format Abstract available

NUGNES F, Gebiola M, Monti MM, Gualtieri L, et al
Genetic Diversity of the Invasive Gall Wasp Leptocybe invasa (Hymenoptera: Eulophidae) and of its Rickettsia Endosymbiont, and Associated Sex-Ratio Differences.
PLoS One. 2015;10:e0124660.
PubMed Text format Abstract available

WANG XJ, Shi DC, Wang XY, Wang J, et al
Evolutionary Migration of the Disjunct Salt Cress Eutrema salsugineum (= Thellungiella salsuginea, Brassicaceae) between Asia and North America.
PLoS One. 2015;10:e0124010.
PubMed Text format Abstract available

GONZALEZ-MAYA JF, Viquez-R LR, Belant JL, Ceballos G, et al
Effectiveness of protected areas for representing species and populations of terrestrial mammals in Costa Rica.
PLoS One. 2015;10:e0124480.
PubMed Text format Abstract available

SITHALDEEN R, Ackermann RR, Bishop JM
Pleistocene aridification cycles shaped the contemporary genetic architecture of Southern African baboons.
PLoS One. 2015;10:e0123207.
PubMed Text format Abstract available

KONNO A, Shiba K, Cai C, Inaba K, et al
Branchial cilia and sperm flagella recruit distinct axonemal components.
PLoS One. 2015;10:e0126005.
PubMed Text format Abstract available

ROCHE B, Leger L, L'Ambert G, Lacour G, et al
The Spread of Aedes albopictus in Metropolitan France: Contribution of Environmental Drivers and Human Activities and Predictions for a Near Future.
PLoS One. 2015;10:e0125600.
PubMed Text format Abstract available

PLENDERLEITH TL, Smith KL, Donnellan SC, Reina RD, et al
Human-assisted invasions of pacific islands by litoria frogs: a case study of the bleating tree frog on Lord Howe Island.
PLoS One. 2015;10:e0126287.
PubMed Text format Abstract available

WASITTHANKASEM R, Vongpunsawad S, Siripon N, Suya C, et al
Genotypic distribution of hepatitis C virus in Thailand and southeast Asia.
PLoS One. 2015;10:e0126764.
PubMed Text format Abstract available

NUNEZ-ZAPATA J, Cubas P, Hawksworth DL, Crespo A, et al
Biogeography and Genetic Structure in Populations of a Widespread Lichen (Parmelina tiliacea, Parmeliaceae, Ascomycota).
PLoS One. 2015;10:e0126981.
PubMed Text format Abstract available

KAUFMANN S, Fuchs C, Gonik M, Khrameeva EE, et al
Inter-chromosomal contact networks provide insights into Mammalian chromatin organization.
PLoS One. 2015;10:e0126125.
PubMed Text format Abstract available

CAPPELLESSO R, Millioni R, Arrigoni G, Simonato F, et al
Lumican is overexpressed in lung adenocarcinoma pleural effusions.
PLoS One. 2015;10:e0126458.
PubMed Text format Abstract available

FANG H, Yue R, Ga Y, Zhang Y, et al
Analysis of Cynandione A's Anti-Ischemic Stroke Effects from Pathways and Protein-Protein Interactome.
PLoS One. 2015;10:e0124632.
PubMed Text format Abstract available

CARREON-MARTINEZ LB, Walter RP, Johnson TB, Ludsin SA, et al
Benefits of Turbid River Plume Habitat for Lake Erie Yellow Perch (Perca flavescens) Recruitment Determined by Juvenile to Larval Genotype Assignment.
PLoS One. 2015;10:e0125234.
PubMed Text format Abstract available

LU X, Zhang XX, Wang Z, Huang K, et al
Bacterial pathogens and community composition in advanced sewage treatment systems revealed by metagenomics analysis based on high-throughput sequencing.
PLoS One. 2015;10:e0125549.
PubMed Text format Abstract available

SCHECHTMAN H, Souza MO
Costly Inheritance and the Persistence of Insecticide Resistance in Aedes aegypti Populations.
PLoS One. 2015;10:e0123961.
PubMed Text format Abstract available

OMETTO L, Li M, Bresadola L, Barbaro E, et al
Demographic History, Population Structure, and Local Adaptation in Alpine Populations of Cardamine impatiens and Cardamine resedifolia.
PLoS One. 2015;10:e0125199.
PubMed Text format Abstract available

WINTERMANS B, Brandt B, Vandenbroucke-Grauls C, Budding A, et al
TreeSeq, a Fast and Intuitive Tool for Analysis of Whole Genome and Metagenomic Sequence Data.
PLoS One. 2015;10:e0123851.
PubMed Text format Abstract available

STOEL M, Pool J, de Vries-Idema J, Zaaraoui-Boutahar F, et al
Innate responses induced by whole inactivated virus or subunit influenza vaccines in cultured dendritic cells correlate with immune responses in vivo.
PLoS One. 2015;10:e0125228.
PubMed Text format Abstract available

RUCHI R, Genovese G, Lee J, Charoonratana VT, et al
Copy Number Variation at the APOL1 Locus.
PLoS One. 2015;10:e0125410.
PubMed Text format Abstract available

LI H, Yu B, Li J, Su L, et al
Characterization of Differentially Expressed Genes Involved in Pathways Associated with Gastric Cancer.
PLoS One. 2015;10:e0125013.
PubMed Text format Abstract available

PANTALEON V, Soavelomandroso AP, Bouttier S, Briandet R, et al
The Clostridium difficile Protease Cwp84 Modulates both Biofilm Formation and Cell-Surface Properties.
PLoS One. 2015;10:e0124971.
PubMed Text format Abstract available

SANGKET U, Vijasika S, Noh H, Chantratita W, et al
SNPer: An R Library for Quantitative Variant Analysis on Single Nucleotide Polymorphisms among Influenza Virus Populations.
PLoS One. 2015;10:e0122812.
PubMed Text format Abstract available

LI X, Chen L, Zhu Y, Yu X, et al
Genomic Analysis of a Mycobacterium Bovisbacillus Calmette-Guerin Strain Isolated from an Adult Patient with Pulmonary Tuberculosis.
PLoS One. 2015;10:e0122403.
PubMed Text format Abstract available

CALDERARO A, Piergianni M, Buttrini M, Montecchini S, et al
MALDI-TOF mass spectrometry for the detection and differentiation of Entamoeba histolytica and Entamoeba dispar.
PLoS One. 2015;10:e0122448.
PubMed Text format Abstract available

AKIB NA, Tam BM, Phumee P, Abidin MZ, et al
High connectivity in Rastrelliger kanagurta: influence of historical signatures and migratory behaviour inferred from mtDNA cytochrome b.
PLoS One. 2015;10:e0119749.
PubMed Text format Abstract available

OVED K, Cohen A, Boico O, Navon R, et al
A novel host-proteome signature for distinguishing between acute bacterial and viral infections.
PLoS One. 2015;10:e0120012.
PubMed Text format Abstract available

DOORENWEERD C, van Nieukerken EJ, Menken SB
A global phylogeny of leafmining Ectoedemia moths (Lepidoptera: Nepticulidae): exploring host plant family shifts and allopatry as drivers of speciation.
PLoS One. 2015;10:e0119586.
PubMed Text format Abstract available

SOLER-MEMBRIVES A, Munilla T
PYCNOIB: biodiversity and biogeography of Iberian pycnogonids.
PLoS One. 2015;10:e0120818.
PubMed Text format Abstract available

WANG L, Fu S, Cao L, Lei W, et al
Isolation and identification of a natural reassortant mammalian orthoreovirus from least horseshoe bat in China.
PLoS One. 2015;10:e0118598.
PubMed Text format Abstract available

CHEN L, Liu Y, Liu H, Kang L, et al
Identification and expression analysis of MATE genes involved in flavonoid transport in blueberry plants.
PLoS One. 2015;10:e0118578.
PubMed Text format Abstract available

CRESAWN SG, Pope WH, Jacobs-Sera D, Bowman CA, et al
Comparative Genomics of Cluster O Mycobacteriophages.
PLoS One. 2015;10:e0118725.
PubMed Text format Abstract available

LANIER HC, Gunderson AM, Weksler M, Fedorov VB, et al
Comparative phylogeography highlights the double-edged sword of climate change faced by arctic- and alpine-adapted mammals.
PLoS One. 2015;10:e0118396.
PubMed Text format Abstract available

CHEN L, Chu C, Kong X, Huang T, et al
Discovery of new candidate genes related to brain development using protein interaction information.
PLoS One. 2015;10:e0118003.
PubMed Text format Abstract available

XIAO LQ, Moller M
Nuclear ribosomal ITS functional paralogs resolve the phylogenetic relationships of a late-Miocene radiation cycad Cycas (Cycadaceae).
PLoS One. 2015;10:e0117971.
PubMed Text format Abstract available

QIN H, Chen M, Yi X, Bie S, et al
Identification of associated SSR markers for yield component and fiber quality traits based on frame map and Upland cotton collections.
PLoS One. 2015;10:e0118073.
PubMed Text format Abstract available

CHEN YY, Chang JR, Kuo SC, Tseng FC, et al
Molecular epidemiology of tuberculosis in kaohsiung city located at southern taiwan, 2000-2008.
PLoS One. 2015;10:e0117061.
PubMed Text format Abstract available

PERIASAMY M, Schafleitner R, Muthukalingan K, Ramasamy S, et al
Phylogeographical Structure in Mitochondrial DNA of Legume Pod Borer (Maruca vitrata) Population in Tropical Asia and Sub-Saharan Africa.
PLoS One. 2015;10:e0124057.
PubMed Text format Abstract available

HAO R, Adoligbe C, Jiang B, Zhao X, et al
An Optimized Trichloroacetic Acid/Acetone Precipitation Method for Two-Dimensional Gel Electrophoresis Analysis of Qinchuan Cattle Longissimus Dorsi Muscle Containing High Proportion of Marbling.
PLoS One. 2015;10:e0124723.
PubMed Text format Abstract available

LOBO JM, Dicker AP, Buerki C, Daviconi E, et al
Evaluating the clinical impact of a genomic classifier in prostate cancer using individualized decision analysis.
PLoS One. 2015;10:e0116866.
PubMed Text format Abstract available

ZHANG J, Jiang K, Lv L, Wang H, et al
Use of genome-wide association studies for cancer research and drug repositioning.
PLoS One. 2015;10:e0116477.
PubMed Text format Abstract available

SHAPCOTT A, Forster PI, Guymer GP, McDonald WJ, et al
Mapping biodiversity and setting conservation priorities for SE Queensland's rainforests using DNA barcoding.
PLoS One. 2015;10:e0122164.
PubMed Text format Abstract available

KOBAYASHI K, Fujii T, Asada R, Ooka M, et al
Development of a targeted flip-in system in avian DT40 cells.
PLoS One. 2015;10:e0122006.
PubMed Text format Abstract available

HETTINGA KA, Reina FM, Boeren S, Zhang L, et al
Difference in the Breast Milk Proteome between Allergic and Non-Allergic Mothers.
PLoS One. 2015;10:e0122234.
PubMed Text format Abstract available

BASTOS HP, Sousa L, Clarke LA, Couto FM, et al
GRYFUN: a web application for GO term annotation visualization and analysis in protein sets.
PLoS One. 2015;10:e0119631.
PubMed Text format Abstract available

FANG Y, Qin Y, Zhang N, Wang J, et al
DISIS: prediction of drug response through an iterative sure independence screening.
PLoS One. 2015;10:e0120408.
PubMed Text format Abstract available

BUKONTAITE R, Ranarilalatiana T, Randriamihaja JH, Bergsten J, et al
In or out-of-Madagascar?--Colonization patterns for large-bodied diving beetles (Coleoptera: Dytiscidae).
PLoS One. 2015;10:e0120777.
PubMed Text format Abstract available

BARCELO F, Cerda JJ, Gutierrez A, Jimenez-Marco T, et al
Characterization of monoclonal gammopathy of undetermined significance by calorimetric analysis of blood serum proteome.
PLoS One. 2015;10:e0120316.
PubMed Text format Abstract available

REICH A, Dunn C, Akasaka K, Wessel G, et al
Phylogenomic analyses of Echinodermata support the sister groups of Asterozoa and Echinozoa.
PLoS One. 2015;10:e0119627.
PubMed Text format Abstract available

WU Z, Wang L, Guo Z, Wang K, et al
Experimental study on differences in clivus chordoma bone invasion: an iTRAQ-based quantitative proteomic analysis.
PLoS One. 2015;10:e0119523.
PubMed Text format Abstract available

ZOU X, Wang Y, Tu G, Zan Z, et al
Adaptation and transcriptome analysis of Aureobasidium pullulans in corncob hydrolysate for increased inhibitor tolerance to malic acid production.
PLoS One. 2015;10:e0121416.
PubMed Text format Abstract available

RAMASAMY S, Velmurugan G, Shanmugha Rajan K, Ramprasath T, et al
MiRNAs with apoptosis regulating potential are differentially expressed in chronic exercise-induced physiologically hypertrophied hearts.
PLoS One. 2015;10:e0121401.
PubMed Text format Abstract available

YAMANOBE Y, Nagahara N, Matsukawa T, Ito T, et al
Sex differences in shotgun proteome analyses for chronic oral intake of cadmium in mice.
PLoS One. 2015;10:e0121819.
PubMed Text format Abstract available

TESTA R, Vanhooren V, Bonfigli AR, Boemi M, et al
N-glycomic changes in serum proteins in type 2 diabetes mellitus correlate with complications and with metabolic syndrome parameters.
PLoS One. 2015;10:e0119983.
PubMed Text format Abstract available

AHMED MM, Dhanasekaran AR, Block A, Tong S, et al
Protein dynamics associated with failed and rescued learning in the Ts65Dn mouse model of Down syndrome.
PLoS One. 2015;10:e0119491.
PubMed Text format Abstract available

RONOWICZ M, Kuklinski P, Mapstone GM
Trends in the diversity, distribution and life history strategy of Arctic Hydrozoa (Cnidaria).
PLoS One. 2015;10:e0120204.
PubMed Text format Abstract available

ZHANG X, Cui J, Liu LN, Jiang P, et al
Genetic structure analysis of Spirometra erinaceieuropaei isolates from central and southern China.
PLoS One. 2015;10:e0119295.
PubMed Text format Abstract available

JUHASZ G, Gonda X, Hullam G, Eszlari N, et al
Variability in the Effect of 5-HTTLPR on Depression in a Large European Population: The Role of Age, Symptom Profile, Type and Intensity of Life Stressors.
PLoS One. 2015;10:e0116316.
PubMed Text format Abstract available

BLANCO GONZALEZ E, Aritaki M, Knutsen H, Taniguchi N, et al
Effects of Large-Scale Releases on the Genetic Structure of Red Sea Bream (Pagrus major, Temminck et Schlegel) Populations in Japan.
PLoS One. 2015;10:e0125743.
PubMed Text format Abstract available

SANTOS JUNIOR JE, Santos FR, Silveira FA
Hitting an Unintended Target: Phylogeography of Bombus brasiliensis Lepeletier, 1836 and the First New Brazilian Bumblebee Species in a Century (Hymenoptera: Apidae).
PLoS One. 2015;10:e0125847.
PubMed Text format Abstract available

RODRIGUEZ MC, Loaces I, Amarelle V, Senatore D, et al
Est10: A Novel Alkaline Esterase Isolated from Bovine Rumen Belonging to the New Family XV of Lipolytic Enzymes.
PLoS One. 2015;10:e0126651.
PubMed Text format Abstract available

SAHL JW, Allender CJ, Colman RE, Califf KJ, et al
Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence.
PLoS One. 2015;10:e0121052.
PubMed Text format Abstract available

SCHULER W, Bunikis I, Weber-Lehman J, Comstedt P, et al
Complete genome sequence of Borrelia afzelii K78 and comparative genome analysis.
PLoS One. 2015;10:e0120548.
PubMed Text format Abstract available

SALEM M, Paneru B, Al-Tobasei R, Abdouni F, et al
Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout.
PLoS One. 2015;10:e0121778.
PubMed Text format Abstract available

KIM MK, Cho JH, Lee JJ, Son MH, et al
Proteomic analysis of INS-1 rat insulinoma cells: ER stress effects and the protective role of exenatide, a GLP-1 receptor agonist.
PLoS One. 2015;10:e0120536.
PubMed Text format Abstract available

XU J, Lan H, Fang H, Huang X, et al
Quantitative proteomic analysis of the rice (Oryza sativa L.) salt response.
PLoS One. 2015;10:e0120978.
PubMed Text format Abstract available

CHUN SM, Lee JY, Choi J, Lee JH, et al
Epigenetic Modulation with HDAC Inhibitor CG200745 Induces Anti-Proliferation in Non-Small Cell Lung Cancer Cells.
PLoS One. 2015;10:e0119379.
PubMed Text format Abstract available

RANG J, He H, Wang T, Ding X, et al
Comparative analysis of genomics and proteomics in Bacillus thuringiensis 4.0718.
PLoS One. 2015;10:e0119065.
PubMed Text format Abstract available

KROL K, Brozda I, Skoneczny M, Bretner M, et al
A genomic screen revealing the importance of vesicular trafficking pathways in genome maintenance and protection against genotoxic stress in diploid Saccharomyces cerevisiae cells.
PLoS One. 2015;10:e0120702.
PubMed Text format Abstract available

TROPF FC, Stulp G, Barban N, Visscher PM, et al
Human fertility, molecular genetics, and natural selection in modern societies.
PLoS One. 2015;10:e0126821.
PubMed Text format Abstract available

FUSCO G, Lesniewska M, Congiu L, Bertorelle G, et al
Population genetic structure of a centipede species with high levels of developmental instability.
PLoS One. 2015;10:e0126245.
PubMed Text format Abstract available

BAUSCH-FLUCK D, Hofmann A, Bock T, Frei AP, et al
A mass spectrometric-derived cell surface protein atlas.
PLoS One. 2015;10:e0121314.
PubMed Text format Abstract available

CHAUDHARY S, Sharma PC
DeepSAGE based differential gene expression analysis under cold and freeze stress in seabuckthorn (Hippophae rhamnoides L.).
PLoS One. 2015;10:e0121982.
PubMed Text format Abstract available

PETROV P, Syrjanen R, Smith J, Gutowska MW, et al
Characterization of the avian Trojan gene family reveals contrasting evolutionary constraints.
PLoS One. 2015;10:e0121672.
PubMed Text format Abstract available

CZAJKOWSKI R, Ozymko Z, de Jager V, Siwinska J, et al
Genomic, proteomic and morphological characterization of two novel broad host lytic bacteriophages PhiPD10.3 and PhiPD23.1 infecting pectinolytic Pectobacterium spp. and Dickeya spp.
PLoS One. 2015;10:e0119812.
PubMed Text format Abstract available

HAO Z, Fan C, Cheng T, Su Y, et al
Genome-wide identification, characterization and evolutionary analysis of long intergenic noncoding RNAs in cucumber.
PLoS One. 2015;10:e0121800.
PubMed Text format Abstract available

ZHANG G, Wang W, Zhang X, Xia Q, et al
De novo RNA sequencing and transcriptome analysis of Colletotrichum gloeosporioides ES026 reveal genes related to biosynthesis of huperzine A.
PLoS One. 2015;10:e0120809.
PubMed Text format Abstract available

YOU Y, He L, Zhang M, Zhang J, et al
Comparative genomics of a Helicobacter pylori isolate from a Chinese Yunnan Naxi ethnic aborigine suggests high genetic divergence and phage insertion.
PLoS One. 2015;10:e0120659.
PubMed Text format Abstract available

MUGUMBATE G, Abrahams KA, Cox JA, Papadatos G, et al
Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation.
PLoS One. 2015;10:e0121492.
PubMed Text format Abstract available

CHO YI, Ahn YK, Tripathi S, Kim JH, et al
Comparative analysis of disease-linked single nucleotide polymorphic markers from Brassica rapa for their applicability to Brassica oleracea.
PLoS One. 2015;10:e0120163.
PubMed Text format Abstract available

SUN W, Zhou Q, Yao Y, Qiu X, et al
Identification of genomic regions and the isoamylase gene for reduced grain chalkiness in rice.
PLoS One. 2015;10:e0122013.
PubMed Text format Abstract available

HAUSE BM, Collin EA, Anderson J, Hesse RA, et al
Bovine rhinitis viruses are common in U.S. cattle with bovine respiratory disease.
PLoS One. 2015;10:e0121998.
PubMed Text format Abstract available

WU Z, Xia R, Yin X, Huo Y, et al
Proteomic Analysis of Duodenal Tissue from Escherichia coli F18-Resistant and -Susceptible Weaned Piglets.
PLoS One. 2015;10:e0127164.
PubMed Text format Abstract available

PIWOWAR M, Jurkowski W
ONION: Functional Approach for Integration of Lipidomics and Transcriptomics Data.
PLoS One. 2015;10:e0128854.
PubMed Text format Abstract available

HERVELLA M, Rotea M, Izagirre N, Constantinescu M, et al
Ancient DNA from South-East Europe Reveals Different Events during Early and Middle Neolithic Influencing the European Genetic Heritage.
PLoS One. 2015;10:e0128810.
PubMed Text format Abstract available

GELLA L, Raman R, Kulothungan V, Pal SS, et al
Impairment of Colour Vision in Diabetes with No Retinopathy: Sankara Nethralaya Diabetic Retinopathy Epidemiology and Molecular Genetics Study (SNDREAMS- II, Report 3).
PLoS One. 2015;10:e0129391.
PubMed Text format Abstract available

LARSON S, Farrer D, Lowry D, Ebert DA, et al
Preliminary Observations of Population Genetics and Relatedness of the Broadnose Sevengill Shark, Notorynchus cepedianus, in Two Northeast Pacific Estuaries.
PLoS One. 2015;10:e0129278.
PubMed Text format Abstract available

ZOU W, Cui D, Wang X, Guo H, et al
Clinical characteristics and molecular epidemiology of noroviruses in outpatient children with acute gastroenteritis in Huzhou of China.
PLoS One. 2015;10:e0127596.
PubMed Text format Abstract available

AL-MALEKI AR, Mariappan V, Vellasamy KM, Tay ST, et al
Altered Proteome of Burkholderia pseudomallei Colony Variants Induced by Exposure to Human Lung Epithelial Cells.
PLoS One. 2015;10:e0127398.
PubMed Text format Abstract available

UCHIYAMA T, Irie M, Mori H, Kurokawa K, et al
FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data.
PLoS One. 2015;10:e0126967.
PubMed Text format Abstract available

DAO HT, Smith-Keune C, Wolanski E, Jones CM, et al
Oceanographic Currents and Local Ecological Knowledge Indicate, and Genetics Does Not Refute, a Contemporary Pattern of Larval Dispersal for The Ornate Spiny Lobster, Panulirus ornatus in the South-East Asian Archipelago.
PLoS One. 2015;10:e0124568.
PubMed Text format Abstract available

MATOS LM, Neves AJ, Pratas D, Pinho AJ, et al
MAFCO: a compression tool for MAF files.
PLoS One. 2015;10:e0116082.
PubMed Text format Abstract available

MULLER B, Manzoor S, Niazi A, Bongcam-Rudloff E, et al
Genome-guided analysis of physiological capacities of Tepidanaerobacter acetatoxydans provides insights into environmental adaptations and syntrophic acetate oxidation.
PLoS One. 2015;10:e0121237.
PubMed Text format Abstract available

WANG DL, Li H, Liang R, Bao J, et al
Identification of multiple metabolic enzymes from mice cochleae tissue using a novel functional proteomics technology.
PLoS One. 2015;10:e0121826.
PubMed Text format Abstract available

GREGORIUS HR, Gillet EM
Classifying measures of biological variation.
PLoS One. 2015;10:e0115312.
PubMed Text format Abstract available

CHAN EK, Hardie RA, Petersen DC, Beeson K, et al
Revised timeline and distribution of the earliest diverged human maternal lineages in southern Africa.
PLoS One. 2015;10:e0121223.
PubMed Text format Abstract available

PERRON GG, Whyte L, Turnbaugh PJ, Goordial J, et al
Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics.
PLoS One. 2015;10:e0069533.
PubMed Text format Abstract available

BROUSSEAU L, Foll M, Scotti-Saintagne C, Scotti I, et al
Neutral and adaptive drivers of microgeographic genetic divergence within continuous populations: the case of the neotropical tree Eperua falcata (Aubl.).
PLoS One. 2015;10:e0121394.
PubMed Text format Abstract available

MCALLISTER SC, Schleiss MR, Arbefeville S, Steiner ME, et al
Epidemic 2014 enterovirus D68 cross-reacts with human rhinovirus on a respiratory molecular diagnostic platform.
PLoS One. 2015;10:e0118529.
PubMed Text format Abstract available

KUMARI R, Nambiar M, Shanbagh S, Raghavan SC, et al
Detection of G-quadruplex DNA using primer extension as a tool.
PLoS One. 2015;10:e0119722.
PubMed Text format Abstract available

HARRIS DA, Patel SH, Gucek M, Hendrix A, et al
Exosomes released from breast cancer carcinomas stimulate cell movement.
PLoS One. 2015;10:e0117495.
PubMed Text format Abstract available

ZHAO X, Wang A, Walter V, Patel NM, et al
Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC.
PLoS One. 2015;10:e0129280.
PubMed Text format Abstract available

YUE Y, Guo T, Liu J, Guo J, et al
Exploring Differentially Expressed Genes and Natural Antisense Transcripts in Sheep (Ovis aries) Skin with Different Wool Fiber Diameters by Digital Gene Expression Profiling.
PLoS One. 2015;10:e0129249.
PubMed Text format Abstract available

HAN J, Zhang M, Froese S, Dai FF, et al
The Identification of Novel Protein-Protein Interactions in Liver that Affect Glucagon Receptor Activity.
PLoS One. 2015;10:e0129226.
PubMed Text format Abstract available

WORBY CJ, Read TD
'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens.
PLoS One. 2015;10:e0129745.
PubMed Text format Abstract available

WEI Y, Zhou H, Zhang J, Zhang L, et al
Insight into Dominant Cellulolytic Bacteria from Two Biogas Digesters and Their Glycoside Hydrolase Genes.
PLoS One. 2015;10:e0129921.
PubMed Text format Abstract available

WU Z, Zhang H, Wang Z, Bin S, et al
Discovery of Chemosensory Genes in the Oriental Fruit Fly, Bactrocera dorsalis.
PLoS One. 2015;10:e0129794.
PubMed Text format Abstract available

ZHUANG QY, Wang KC, Liu S, Hou GY, et al
Genomic Analysis and Surveillance of the Coronavirus Dominant in Ducks in China.
PLoS One. 2015;10:e0129256.
PubMed Text format Abstract available

JHA P, Lu D, Xu S
Natural Selection and Functional Potentials of Human Noncoding Elements Revealed by Analysis of Next Generation Sequencing Data.
PLoS One. 2015;10:e0129023.
PubMed Text format Abstract available

FREGEL R, Cabrera V, Larruga JM, Abu-Amero KK, et al
Carriers of Mitochondrial DNA Macrohaplogroup N Lineages Reached Australia around 50,000 Years Ago following a Northern Asian Route.
PLoS One. 2015;10:e0129839.
PubMed Text format Abstract available

MANCINI E, Spinaci MI, Gordicho V, Caputo B, et al
Adaptive Potential of Hybridization among Malaria Vectors: Introgression at the Immune Locus TEP1 between Anopheles coluzzii and A. gambiae in 'Far-West' Africa.
PLoS One. 2015;10:e0127804.
PubMed Text format Abstract available

ZHONG Y, Cheng CZ, Jiang NH, Jiang B, et al
Comparative Transcriptome and iTRAQ Proteome Analyses of Citrus Root Responses to Candidatus Liberibacter asiaticus Infection.
PLoS One. 2015;10:e0126973.
PubMed Text format Abstract available

THEKKINIATH J, Zabet-Moghaddam M, Kottapalli KR, Pasham MR, et al
Quantitative Proteomics of an Amphibian Pathogen, Batrachochytrium dendrobatidis, following Exposure to Thyroid Hormone.
PLoS One. 2015;10:e0123637.
PubMed Text format Abstract available

DANIS-WLODARCZYK K, Olszak T, Arabski M, Wasik S, et al
Characterization of the Newly Isolated Lytic Bacteriophages KTN6 and KT28 and Their Efficacy against Pseudomonas aeruginosa Biofilm.
PLoS One. 2015;10:e0127603.
PubMed Text format Abstract available

KUMAR D, Datta R, Hazra S, Sultana A, et al
Transcriptomic profiling of Arabidopsis thaliana mutant pad2.1 in response to combined cold and osmotic stress.
PLoS One. 2015;10:e0122690.
PubMed Text format Abstract available

BAUMLISBERGER M, Youssar L, Schilhabel MB, Jonas D, et al
Influence of a non-hospital medical care facility on antimicrobial resistance in wastewater.
PLoS One. 2015;10:e0122635.
PubMed Text format Abstract available

YOSHIDA A, Niki M, Yamamoto Y, Yasunaga A, et al
Proteome Analysis Identifies the Dpr Protein of Streptococcus mutans as an Important Factor in the Presence of Early Streptococcal Colonizers of Tooth Surfaces.
PLoS One. 2015;10:e0121176.
PubMed Text format Abstract available

HRUSCHKA DJ, Hadley C, Brewis AA, Stojanowski CM, et al
Genetic population structure accounts for contemporary ecogeographic patterns in tropic and subtropic-dwelling humans.
PLoS One. 2015;10:e0122301.
PubMed Text format Abstract available

TARIQ M, Chen R, Yuan H, Liu Y, et al
De novo transcriptomic analysis of peripheral blood lymphocytes from the Chinese goose: gene discovery and immune system pathway description.
PLoS One. 2015;10:e0121015.
PubMed Text format Abstract available

LEGAULT MA, Girard S, Lemieux Perreault LP, Rouleau GA, et al
Comparison of sequencing based CNV discovery methods using monozygotic twin quartets.
PLoS One. 2015;10:e0122287.
PubMed Text format Abstract available

WALFORD GA, Colomo N, Todd JN, Billings LK, et al
The Study to Understand the Genetics of the Acute Response to Metformin and Glipizide in Humans (SUGAR-MGH): Design of a pharmacogenetic Resource for Type 2 Diabetes.
PLoS One. 2015;10:e0121553.
PubMed Text format Abstract available

MO XB, Lu X, Zhang YH, Zhang ZL, et al
Gene-based association analysis identified novel genes associated with bone mineral density.
PLoS One. 2015;10:e0121811.
PubMed Text format Abstract available

SAKAI M, Martinez-Arguelles DB, Patterson NH, Chaurand P, et al
In search of the molecular mechanisms mediating the inhibitory effect of the GnRH antagonist degarelix on human prostate cell growth.
PLoS One. 2015;10:e0120670.
PubMed Text format Abstract available

YU F, Lu J, Liu X, Gazave E, et al
Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions.
PLoS One. 2015;10:e0121644.
PubMed Text format Abstract available

VARGAS P, Rumeu B, Heleno RH, Traveset A, et al
Historical isolation of the Galapagos carpenter bee (Xylocopa darwini) despite strong flight capability and ecological amplitude.
PLoS One. 2015;10:e0120597.
PubMed Text format Abstract available

YEON B, Ahn E, Kim KI, Kim IW, et al
Analysis of pharmacogenomic variants associated with population differentiation.
PLoS One. 2015;10:e0119994.
PubMed Text format Abstract available

KLEIN W, Westendorf C, Schmidt A, Conill-Cortes M, et al
Defining a conformational consensus motif in cotransin-sensitive signal sequences: a proteomic and site-directed mutagenesis study.
PLoS One. 2015;10:e0120886.
PubMed Text format Abstract available

GONG K, Tjong H, Zhou XJ, Alber F, et al
Comparative 3D genome structure analysis of the fission and the budding yeast.
PLoS One. 2015;10:e0119672.
PubMed Text format Abstract available

GOMEZ-CARBALLA A, Pardo-Seco J, Amigo J, Martinon-Torres F, et al
Mitogenomes from The 1000 Genome Project reveal new Near Eastern features in present-day Tuscans.
PLoS One. 2015;10:e0119242.
PubMed Text format Abstract available

MARUTHUR NM, Li M, Halushka MK, Astor BC, et al
Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.
PLoS One. 2015;10:e0128452.
PubMed Text format Abstract available

IKUMA S, Sato T, Sugiura-Ogasawara M, Nagayoshi M, et al
Preimplantation Genetic Diagnosis and Natural Conception: A Comparison of Live Birth Rates in Patients with Recurrent Pregnancy Loss Associated with Translocation.
PLoS One. 2015;10:e0129958.
PubMed Text format Abstract available

RUANE S, Torres-Carvajal O, Burbrink FT
Independent Demographic Responses to Climate Change among Temperate and Tropical Milksnakes (Colubridae: Genus Lampropeltis).
PLoS One. 2015;10:e0128543.
PubMed Text format Abstract available

MOON KL, Banks SC, Fraser CI
Phylogeographic Structure in Penguin Ticks across an Ocean Basin Indicates Allopatric Divergence and Rare Trans-Oceanic Dispersal.
PLoS One. 2015;10:e0128514.
PubMed Text format Abstract available

MORANTE-FILHO JC, Faria D, Mariano-Neto E, Rhodes J, et al
Birds in Anthropogenic Landscapes: The Responses of Ecological Groups to Forest Loss in the Brazilian Atlantic Forest.
PLoS One. 2015;10:e0128923.
PubMed Text format Abstract available

EGGE JJ, Hagbo TJ
Comparative phylogeography of Mississippi embayment fishes.
PLoS One. 2015;10:e0116719.
PubMed Text format Abstract available

HUANG X, Liu D, Wang D, Shi X, et al
Molecular and quantitative genetic differentiation in Sitobion avenae populations from both sides of the Qinling Mountains.
PLoS One. 2015;10:e0122343.
PubMed Text format Abstract available

KENCHINGTON EL, Nakashima BS, Taggart CT, Hamilton LC, et al
Genetic structure of capelin (Mallotus villosus) in the northwest Atlantic Ocean.
PLoS One. 2015;10:e0122315.
PubMed Text format Abstract available

CACERES M, Ortiz L, Recabarren T, Romero A, et al
TRPM4 Is a Novel Component of the Adhesome Required for Focal Adhesion Disassembly, Migration and Contractility.
PLoS One. 2015;10:e0130540.
PubMed Text format Abstract available

HAAS B, Grenier D
Isolation, Characterization and Biological Properties of Membrane Vesicles Produced by the Swine Pathogen Streptococcus suis.
PLoS One. 2015;10:e0130528.
PubMed Text format Abstract available

HEARD S, Brown NA, Hammond-Kosack K
An Interspecies Comparative Analysis of the Predicted Secretomes of the Necrotrophic Plant Pathogens Sclerotinia sclerotiorum and Botrytis cinerea.
PLoS One. 2015;10:e0130534.
PubMed Text format Abstract available

YANG J, Tian L, Xu B, Xie W, et al
Insight into the Migration Routes of Plutella xylostella in China Using mtCOI and ISSR Markers.
PLoS One. 2015;10:e0130905.
PubMed Text format Abstract available

OUDEJANS MG, Visser F, Englund A, Rogan E, et al
Evidence for distinct coastal and offshore communities of bottlenose dolphins in the north east Atlantic.
PLoS One. 2015;10:e0122668.
PubMed Text format Abstract available

DEFAVERI J, Merila J
Temporal stability of genetic variability and differentiation in the three-spined stickleback (Gasterosteus aculeatus).
PLoS One. 2015;10:e0123891.
PubMed Text format Abstract available

PALTA P, Kaplinski L, Nagirnaja L, Veidenberg A, et al
Haplotype phasing and inheritance of copy number variants in nuclear families.
PLoS One. 2015;10:e0122713.
PubMed Text format Abstract available

AN B, Zhang L, Liu N, Wang Y, et al
Refugia persistence of Qinghai-Tibetan plateau by the cold-tolerant bird Tetraogallus tibetanus (Galliformes: Phasianidae).
PLoS One. 2015;10:e0121118.
PubMed Text format Abstract available

BU SH, Zhao X, Yi C, Wen J, et al
Interacted QTL mapping in partial NCII design provides evidences for breeding by design.
PLoS One. 2015;10:e0121034.
PubMed Text format Abstract available

VERHOUGSTRAETE MP, Brothers S, Litaker W, Blackwood AD, et al
Lessons learned from implementing a wet laboratory molecular training workshop for beach water quality monitoring.
PLoS One. 2015;10:e0121214.
PubMed Text format Abstract available

XIA H, Hu C, Zhang D, Tang S, et al
Metagenomic profile of the viral communities in Rhipicephalus spp. ticks from Yunnan, China.
PLoS One. 2015;10:e0121609.
PubMed Text format Abstract available

MILIOLI HH, Vimieiro R, Riveros C, Tishchenko I, et al
The Discovery of Novel Biomarkers Improves Breast Cancer Intrinsic Subtype Prediction and Reconciles the Labels in the METABRIC Data Set.
PLoS One. 2015;10:e0129711.
PubMed Text format Abstract available

FURUKAWA JI, Tsuda M, Okada K, Kimura T, et al
Comprehensive Glycomics of a Multistep Human Brain Tumor Model Reveals Specific Glycosylation Patterns Related to Malignancy.
PLoS One. 2015;10:e0128300.
PubMed Text format Abstract available

PERGA S, Giuliano Albo A, Lis K, Minari N, et al
Vitamin D Binding Protein Isoforms and Apolipoprotein E in Cerebrospinal Fluid as Prognostic Biomarkers of Multiple Sclerosis.
PLoS One. 2015;10:e0129291.
PubMed Text format Abstract available

SUOJALEHTO H, Kinaret P, Kilpelainen M, Toskala E, et al
Level of Fatty Acid Binding Protein 5 (FABP5) Is Increased in Sputum of Allergic Asthmatics and Links to Airway Remodeling and Inflammation.
PLoS One. 2015;10:e0127003.
PubMed Text format Abstract available

WU K, Luo T, Li L, Zhang Q, et al
Multilocus Sequence Typing of Pathogenic Candida albicans Isolates Collected from a Teaching Hospital in Shanghai, China: A Molecular Epidemiology Study.
PLoS One. 2015;10:e0125245.
PubMed Text format Abstract available

LEMESLE G, Maury F, Beseme O, Ovart L, et al
Multimarker Proteomic Profiling for the Prediction of Cardiovascular Mortality in Patients with Chronic Heart Failure.
PLoS One. 2015;10:e0119265.
PubMed Text format Abstract available

DAVIS JA, Burgoon LD
Can Data Science Inform Environmental Justice and Community Risk Screening for Type 2 Diabetes?
PLoS One. 2015;10:e0121855.
PubMed Text format Abstract available

BORST LB, Suyemoto MM, Scholl EH, Fuller FJ, et al
Comparative Genomic Analysis Identifies Divergent Genomic Features of Pathogenic Enterococcus cecorum Including a Type IC CRISPR-Cas System, a Capsule Locus, an epa-Like Locus, and Putative Host Tissue Binding Proteins.
PLoS One. 2015;10:e0121294.
PubMed Text format Abstract available

YANG XY, Zheng KD, Lin K, Zheng G, et al
Energy Metabolism Disorder as a Contributing Factor of Rheumatoid Arthritis: A Comparative Proteomic and Metabolomic Study.
PLoS One. 2015;10:e0132695.
PubMed Text format Abstract available

WHITAKER JW, Boyle DL, Bartok B, Ball ST, et al
Integrative omics analysis of rheumatoid arthritis identifies non-obvious therapeutic targets.
PLoS One. 2015;10:e0124254.
PubMed Text format Abstract available

ROSE JJ, Voora D, Cyr DD, Lucas JE, et al
Gene Expression Profiles Link Respiratory Viral Infection, Platelet Response to Aspirin, and Acute Myocardial Infarction.
PLoS One. 2015;10:e0132259.
PubMed Text format Abstract available

AZE J, Sola C, Zhang J, Lafosse-Marin F, et al
Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm.
PLoS One. 2015;10:e0130912.
PubMed Text format Abstract available

PUERTO G, Erazo L, Wintaco M, Castro C, et al
Mycobacterium tuberculosis Genotypes Determined by Spoligotyping to Be Circulating in Colombia between 1999 and 2012 and Their Possible Associations with Transmission and Susceptibility to First-Line Drugs.
PLoS One. 2015;10:e0124308.
PubMed Text format Abstract available

WANG L, Koppolu S, Chappell C, Moncla BJ, et al
Studying the effects of reproductive hormones and bacterial vaginosis on the glycome of lavage samples from the cervicovaginal cavity.
PLoS One. 2015;10:e0127021.
PubMed Text format Abstract available

CHECCONI P, Salzano S, Bowler L, Mullen L, et al
Redox proteomics of the inflammatory secretome identifies a common set of redoxins and other glutathionylated proteins released in inflammation, influenza virus infection and oxidative stress.
PLoS One. 2015;10:e0127086.
PubMed Text format Abstract available

ZHANG M, Luo H, Xi Z, Rogaeva E, et al
Drug repositioning for diabetes based on 'omics' data mining.
PLoS One. 2015;10:e0126082.
PubMed Text format Abstract available

XU H, Zhao M, Lou G, Zheng M, et al
New point mutations in surface and core genes of hepatitis B virus associated with acute on chronic liver failure identified by complete genomic sequencing.
PLoS One. 2015;10:e0123139.
PubMed Text format Abstract available

YANG J, Fu Z, Hong Y, Wu H, et al
The Differential Expression of Immune Genes between Water Buffalo and Yellow Cattle Determines Species-Specific Susceptibility to Schistosoma japonicum Infection.
PLoS One. 2015;10:e0130344.
PubMed Text format Abstract available

PFAFFEROTT K, Deshpande P, McKinnon E, Merani S, et al
Anti-Hepatitis C Virus T-Cell Immunity in the Context of Multiple Exposures to the Virus.
PLoS One. 2015;10:e0130420.
PubMed Text format Abstract available

DAHLIN A, Litonjua A, Lima JJ, Tamari M, et al
Genome-Wide Association Study Identifies Novel Pharmacogenomic Loci For Therapeutic Response to Montelukast in Asthma.
PLoS One. 2015;10:e0129385.
PubMed Text format Abstract available

SANTOS CL, Nebenzahl-Guimaraes H, Mendes MV, van Soolingen D, et al
To Be or Not to Be a Pseudogene: A Molecular Epidemiological Approach to the mclx Genes and Its Impact in Tuberculosis.
PLoS One. 2015;10:e0128983.
PubMed Text format Abstract available

COUVIGNY B, Therial C, Gautier C, Renault P, et al
Streptococcus thermophilus Biofilm Formation: A Remnant Trait of Ancestral Commensal Life?
PLoS One. 2015;10:e0128099.
PubMed Text format Abstract available

AVSAR T, Durasi IM, Uygunoglu U, Tutuncu M, et al
CSF Proteomics Identifies Specific and Shared Pathways for Multiple Sclerosis Clinical Subtypes.
PLoS One. 2015;10:e0122045.
PubMed Text format Abstract available

ARNTZEN MO, Karlskas IL, Skaugen M, Eijsink VG, et al
Proteomic Investigation of the Response of Enterococcus faecalis V583 when Cultivated in Urine.
PLoS One. 2015;10:e0126694.
PubMed Text format Abstract available

ESPINAR MJ, Miranda IM, Costa-de-Oliveira S, Rocha R, et al
Urinary Tract Infections in Kidney Transplant Patients Due to Escherichia coli and Klebsiella pneumoniae-Producing Extended-Spectrum beta-Lactamases: Risk Factors and Molecular Epidemiology.
PLoS One. 2015;10:e0134737.
PubMed Text format Abstract available

MONTEZANO D, Meek L, Gupta R, Bermudez LE, et al
Flux Balance Analysis with Objective Function Defined by Proteomics Data-Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine.
PLoS One. 2015;10:e0134014.
PubMed Text format Abstract available

KRAYTER L, Schnur LF, Schonian G
The Genetic Relationship between Leishmania aethiopica and Leishmania tropica Revealed by Comparing Microsatellite Profiles.
PLoS One. 2015;10:e0131227.
PubMed Text format Abstract available

HUANG SW, Wang SF, Cowo AE, Chen M, et al
Molecular Epidemiology of HIV-1 Infection among Men who Have Sex with Men in Taiwan in 2012.
PLoS One. 2015;10:e0128266.
PubMed Text format Abstract available

BORDAS-LE FLOCH V, Le Mignon M, Bouley J, Groeme R, et al
Identification of Novel Short Ragweed Pollen Allergens Using Combined Transcriptomic and Immunoproteomic Approaches.
PLoS One. 2015;10:e0136258.
PubMed Text format Abstract available

BURCH TC, Morris MA, Campbell-Thompson M, Pugliese A, et al
Proteomic Analysis of Disease Stratified Human Pancreas Tissue Indicates Unique Signature of Type 1 Diabetes.
PLoS One. 2015;10:e0135663.
PubMed Text format Abstract available

LEE HY, Chen CL, Liu SY, Yan YS, et al
Impact of Molecular Epidemiology and Reduced Susceptibility to Glycopeptides and Daptomycin on Outcomes of Patients with Methicillin-Resistant Staphylococcus aureus Bacteremia.
PLoS One. 2015;10:e0136171.
PubMed Text format Abstract available

LORKOVA L, Scigelova M, Arrey TN, Vit O, et al
Detailed Functional and Proteomic Characterization of Fludarabine Resistance in Mantle Cell Lymphoma Cells.
PLoS One. 2015;10:e0135314.
PubMed Text format Abstract available

HENDRICKSON RC, Lee AY, Song Q, Liaw A, et al
High Resolution Discovery Proteomics Reveals Candidate Disease Progression Markers of Alzheimer's Disease in Human Cerebrospinal Fluid.
PLoS One. 2015;10:e0135365.
PubMed Text format Abstract available

KAEWSEEKHAO B, Naranbhai V, Roytrakul S, Namwat W, et al
Comparative Proteomics of Activated THP-1 Cells Infected with Mycobacterium tuberculosis Identifies Putative Clearance Biomarkers for Tuberculosis Treatment.
PLoS One. 2015;10:e0134168.
PubMed Text format Abstract available

ZHANG J, Gu FF, Zhao SY, Xiao SZ, et al
Prevalence and Molecular Epidemiology of Staphylococcus aureus among Residents of Seven Nursing Homes in Shanghai.
PLoS One. 2015;10:e0137593.
PubMed Text format Abstract available

PENG J, Lu Y, Liu W, Zhu Y, et al
Genotype Distribution and Molecular Epidemiology of Hepatitis C Virus in Hubei, Central China.
PLoS One. 2015;10:e0137059.
PubMed Text format Abstract available

RAMIREZ HA, Liang L, Pastar I, Rosa AM, et al
Comparative Genomic, MicroRNA, and Tissue Analyses Reveal Subtle Differences between Non-Diabetic and Diabetic Foot Skin.
PLoS One. 2015;10:e0137133.
PubMed Text format Abstract available

CRABB JW, Hu B, Crabb JS, Triozzi P, et al
iTRAQ Quantitative Proteomic Comparison of Metastatic and Non-Metastatic Uveal Melanoma Tumors.
PLoS One. 2015;10:e0135543.
PubMed Text format Abstract available

O'HURLEY G, Busch C, Fagerberg L, Hallstrom BM, et al
Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer.
PLoS One. 2015;10:e0133449.
PubMed Text format Abstract available

GARCIA-ETXEBARRIA K, Bracho MA, Galan JC, Pumarola T, et al
No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
PLoS One. 2015;10:e0135983.
PubMed Text format Abstract available

COADY A, Xu M, Phung Q, Cheung TK, et al
The Staphylococcus aureus ABC-Type Manganese Transporter MntABC Is Critical for Reinitiation of Bacterial Replication Following Exposure to Phagocytic Oxidative Burst.
PLoS One. 2015;10:e0138350.
PubMed Text format Abstract available

BIADGLEGNE F, Merker M, Sack U, Rodloff AC, et al
Tuberculous Lymphadenitis in Ethiopia Predominantly Caused by Strains Belonging to the Delhi/CAS Lineage and Newly Identified Ethiopian Clades of the Mycobacterium tuberculosis Complex.
PLoS One. 2015;10:e0137865.
PubMed Text format Abstract available

ODAHARA S, Uchiyama K, Kubota T, Ito Z, et al
A Prospective Study Evaluating Metabolic Capacity of Thiopurine and Associated Adverse Reactions in Japanese Patients with Inflammatory Bowel Disease (IBD).
PLoS One. 2015;10:e0137798.
PubMed Text format Abstract available

BILLINGS E, Sanders-Buell E, Bose M, Bradfield A, et al
The Number and Complexity of Pure and Recombinant HIV-1 Strains Observed within Incident Infections during the HIV and Malaria Cohort Study Conducted in Kericho, Kenya, from 2003 to 2006.
PLoS One. 2015;10:e0135124.
PubMed Text format Abstract available

BUDD WT, Seashols-Williams SJ, Clark GC, Weaver D, et al
Dual Action of miR-125b As a Tumor Suppressor and OncomiR-22 Promotes Prostate Cancer Tumorigenesis.
PLoS One. 2015;10:e0142373.
PubMed Text format Abstract available

GHOSH N, Sircar G, Saha B, Pandey N, et al
Search for Allergens from the Pollen Proteome of Sunflower (Helianthus annuus L.): A Major Sensitizer for Respiratory Allergy Patients.
PLoS One. 2015;10:e0138992.
PubMed Text format Abstract available

NIELSEN HH, Beck HC, Kristensen LP, Burton M, et al
The Urine Proteome Profile Is Different in Neuromyelitis Optica Compared to Multiple Sclerosis: A Clinical Proteome Study.
PLoS One. 2015;10:e0139659.
PubMed Text format Abstract available

BERETOV J, Wasinger VC, Millar EK, Schwartz P, et al
Proteomic Analysis of Urine to Identify Breast Cancer Biomarker Candidates Using a Label-Free LC-MS/MS Approach.
PLoS One. 2015;10:e0141876.
PubMed Text format Abstract available

YE F, Xin Z, Han W, Fan J, et al
Quantitative Proteomics Analysis of the Hepatitis C Virus Replicon High-Permissive and Low-Permissive Cell Lines.
PLoS One. 2015;10:e0142082.
PubMed Text format Abstract available

PEIRIS D, Ossondo M, Fry S, Loizidou M, et al
Identification of O-Linked Glycoproteins Binding to the Lectin Helix pomatia Agglutinin as Markers of Metastatic Colorectal Cancer.
PLoS One. 2015;10:e0138345.
PubMed Text format Abstract available

CAI L, Wu H, Li D, Zhou K, et al
Type 2 Diabetes Biomarkers of Human Gut Microbiota Selected via Iterative Sure Independent Screening Method.
PLoS One. 2015;10:e0140827.
PubMed Text format Abstract available

MYERS JS, von Lersner AK, Robbins CJ, Sang QX, et al
Differentially Expressed Genes and Signature Pathways of Human Prostate Cancer.
PLoS One. 2015;10:e0145322.
PubMed Text format Abstract available

ADETIBA E, Olugbara OO
Improved Classification of Lung Cancer Using Radial Basis Function Neural Network with Affine Transforms of Voss Representation.
PLoS One. 2015;10:e0143542.
PubMed Text format Abstract available

BARBER RC, Phillips NR, Tilson JL, Huebinger RM, et al
Can Genetic Analysis of Putative Blood Alzheimer's Disease Biomarkers Lead to Identification of Susceptibility Loci?
PLoS One. 2015;10:e0142360.
PubMed Text format Abstract available

PHILIPPE J, Derhourhi M, Durand E, Vaillant E, et al
What Is the Best NGS Enrichment Method for the Molecular Diagnosis of Monogenic Diabetes and Obesity?
PLoS One. 2015;10:e0143373.
PubMed Text format Abstract available

SHI Y, Li J, Zhang S, Wang M, et al
Molecular Epidemiology of EGFR Mutations in Asian Patients with Advanced Non-Small-Cell Lung Cancer of Adenocarcinoma Histology - Mainland China Subset Analysis of the PIONEER study.
PLoS One. 2015;10:e0143515.
PubMed Text format Abstract available

PAN F, Han L, Huang W, Tang J, et al
Serotype Distribution, Antimicrobial Susceptibility, and Molecular Epidemiology of Streptococcus pneumoniae Isolated from Children in Shanghai, China.
PLoS One. 2015;10:e0142892.
PubMed Text format Abstract available

GUY AJ, Irani V, MacRaild CA, Anders RF, et al
Insights into the Immunological Properties of Intrinsically Disordered Malaria Proteins Using Proteome Scale Predictions.
PLoS One. 2015;10:e0141729.
PubMed Text format Abstract available

CHEN HJ, Shen YC, Shiao YJ, Liou KT, et al
Multiplex Brain Proteomic Analysis Revealed the Molecular Therapeutic Effects of Buyang Huanwu Decoction on Cerebral Ischemic Stroke Mice.
PLoS One. 2015;10:e0140823.
PubMed Text format Abstract available

SHARMA D, Kumar B, Lata M, Joshi B, et al
Comparative Proteomic Analysis of Aminoglycosides Resistant and Susceptible Mycobacterium tuberculosis Clinical Isolates for Exploring Potential Drug Targets.
PLoS One. 2015;10:e0139414.
PubMed Text format Abstract available

PEROVIC O, Iyaloo S, Kularatne R, Lowman W, et al
Prevalence and Trends of Staphylococcus aureus Bacteraemia in Hospitalized Patients in South Africa, 2010 to 2012: Laboratory-Based Surveillance Mapping of Antimicrobial Resistance and Molecular Epidemiology.
PLoS One. 2015;10:e0145429.
PubMed Text format Abstract available

CHAVES-MORENO D, Wos-Oxley ML, Jauregui R, Medina E, et al
Application of a Novel "Pan-Genome"-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains.
PLoS One. 2015;10:e0145861.
PubMed Text format Abstract available

CAMMAERTS S, Strazisar M, Smets B, Weckhuysen S, et al
Schizophrenia-Associated MIR204 Regulates Noncoding RNAs and Affects Neurotransmitter and Ion Channel Gene Sets.
PLoS One. 2015;10:e0144428.
PubMed Text format Abstract available

BRIFFA R, Um I, Faratian D, Zhou Y, et al
Multi-Scale Genomic, Transcriptomic and Proteomic Analysis of Colorectal Cancer Cell Lines to Identify Novel Biomarkers.
PLoS One. 2015;10:e0144708.
PubMed Text format Abstract available

LI LD, Sun HF, Liu XX, Gao SP, et al
Down-Regulation of NDUFB9 Promotes Breast Cancer Cell Proliferation, Metastasis by Mediating Mitochondrial Metabolism.
PLoS One. 2015;10:e0144441.
PubMed Text format Abstract available

NELVEG-KRISTENSEN KE, Busk Madsen M, Torp-Pedersen C, Kober L, et al
Pharmacogenetic Risk Stratification in Angiotensin-Converting Enzyme Inhibitor-Treated Patients with Congestive Heart Failure: A Retrospective Cohort Study.
PLoS One. 2015;10:e0144195.
PubMed Text format Abstract available

EL-SAYED AS, Yassin MA, Ali GS
Transcriptional and Proteomic Profiling of Aspergillus flavipes in Response to Sulfur Starvation.
PLoS One. 2015;10:e0144304.
PubMed Text format Abstract available

AL-RUBAYE AA, Couger MB, Ojha S, Pummill JF, et al
Genome Analysis of Staphylococcus agnetis, an Agent of Lameness in Broiler Chickens.
PLoS One. 2015;10:e0143336.
PubMed Text format Abstract available

LUK KC, Berg MG, Naccache SN, Kabre B, et al
Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity.
PLoS One. 2015;10:e0141723.
PubMed Text format Abstract available

DELGADO E, Cuevas MT, Dominguez F, Vega Y, et al
Phylogeny and Phylogeography of a Recent HIV-1 Subtype F Outbreak among Men Who Have Sex with Men in Spain Deriving from a Cluster with a Wide Geographic Circulation in Western Europe.
PLoS One. 2015;10:e0143325.
PubMed Text format Abstract available

SEKIZUKA T, Yamashita A, Murase Y, Iwamoto T, et al
TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing.
PLoS One. 2015;10:e0142951.
PubMed Text format Abstract available

NISHIJIMA T, Hayashida T, Kurosawa T, Tanaka N, et al
Drug Transporter Genetic Variants Are Not Associated with TDF-Related Renal Dysfunction in Patients with HIV-1 Infection: A Pharmacogenetic Study.
PLoS One. 2015;10:e0141931.
PubMed Text format Abstract available

WANG C, Zhang J, Cai M, Zhu Z, et al
DBGC: A Database of Human Gastric Cancer.
PLoS One. 2015;10:e0142591.
PubMed Text format Abstract available

DAVID S, Mateus AR, Duarte EL, Albuquerque J, et al
Determinants of the Sympatric Host-Pathogen Relationship in Tuberculosis.
PLoS One. 2015;10:e0140625.
PubMed Text format Abstract available

January 2014

ENGLER JO, Balkenhol N, Filz KJ, Habel JC, et al
Comparative landscape genetics of three closely related sympatric Hesperid butterflies with diverging ecological traits.
PLoS One. 2014;9:e106526.
PubMed Text format Abstract available

CHEN C, Li P, Wang RH, Schaal BA, et al
The population genetics of cultivation: domestication of a traditional Chinese medicine, Scrophularia ningpoensis Hemsl. (Scrophulariaceae).
PLoS One. 2014;9:e105064.
PubMed Text format Abstract available

ROXO FF, Albert JS, Silva GS, Zawadzki CH, et al
Molecular phylogeny and biogeographic history of the armored neotropical catfish subfamilies hypoptopomatinae, neoplecostominae and otothyrinae (siluriformes: loricariidae).
PLoS One. 2014;9:e105564.
PubMed Text format Abstract available

WANG Y, Yan G
Molecular phylogeography and population genetic structure of O. longilobus and O. taihangensis (Opisthopappus) on the Taihang mountains.
PLoS One. 2014;9:e104773.
PubMed Text format Abstract available

NEWTON R, Wernisch L
A meta-analysis of multiple matched copy number and transcriptomics data sets for inferring gene regulatory relationships.
PLoS One. 2014;9:e105522.
PubMed Text format Abstract available

ZHANG Y, Dai S, Hong Y, Song X, et al
Application of genomic SSR locus polymorphisms on the identification and classification of chrysanthemum cultivars in China.
PLoS One. 2014;9:e104856.
PubMed Text format Abstract available

KOVACEVIC L, Tambets K, Ilumae AM, Kushniarevich A, et al
Standing at the gateway to Europe--the genetic structure of Western balkan populations based on autosomal and haploid markers.
PLoS One. 2014;9:e105090.
PubMed Text format Abstract available

CHYLEK LA, Akimov V, Dengjel J, Rigbolt KT, et al
Phosphorylation site dynamics of early T-cell receptor signaling.
PLoS One. 2014;9:e104240.
PubMed Text format Abstract available

ZHANG Y, Pham NK, Zhang H, Lin J, et al
Genetic variations in two seahorse species (Hippocampus mohnikei and Hippocampus trimaculatus): evidence for middle Pleistocene population expansion.
PLoS One. 2014;9:e105494.
PubMed Text format Abstract available

AKADA J, Okuda M, Hiramoto N, Kitagawa T, et al
Proteomic characterization of Helicobacter pylori CagA antigen recognized by child serum antibodies and its epitope mapping by peptide array.
PLoS One. 2014;9:e104611.
PubMed Text format Abstract available

SKEWES-COX P, Sharpton TJ, Pollard KS, DeRisi JL, et al
Profile hidden Markov models for the detection of viruses within metagenomic sequence data.
PLoS One. 2014;9:e105067.
PubMed Text format Abstract available

YAN Y, Yi G, Sun C, Qu L, et al
Genome-wide characterization of insertion and deletion variation in chicken using next generation sequencing.
PLoS One. 2014;9:e104652.
PubMed Text format Abstract available

HIDALGO-GALIANA A, Monge M, Biron DG, Canals F, et al
Reproducibility and consistency of proteomic experiments on natural populations of a non-model aquatic insect.
PLoS One. 2014;9:e104734.
PubMed Text format Abstract available

KLAMMER M, Dybowski JN, Hoffmann D, Schaab C, et al
Identification of significant features by the Global Mean Rank test.
PLoS One. 2014;9:e104504.
PubMed Text format Abstract available

ANDRE A, Quillevere F, Morard R, Ujiie Y, et al
SSU rDNA divergence in planktonic foraminifera: molecular taxonomy and biogeographic implications.
PLoS One. 2014;9:e104641.
PubMed Text format Abstract available

PORRO F, Bockor L, De Caneva A, Bortolussi G, et al
Generation of Ugt1-deficient murine liver cell lines using TALEN technology.
PLoS One. 2014;9:e104816.
PubMed Text format Abstract available

WANG Z, Hu H, Goertzen LR, McElroy JS, et al
Analysis of the Citrullus colocynthis transcriptome during water deficit stress.
PLoS One. 2014;9:e104657.
PubMed Text format Abstract available

MORAN-LUIS M, Fameli A, Blanco-Fontao B, Fernandez-Gil A, et al
Demographic status and genetic tagging of endangered capercaillie in NW Spain.
PLoS One. 2014;9:e99799.
PubMed Text format Abstract available

FONTANILLA IK, Sta Maria IM, Garcia JR, Ghate H, et al
Restricted genetic variation in populations of Achatina (Lissachatina) fulica outside of East Africa and the Indian Ocean Islands points to the Indian Ocean Islands as the earliest known common source.
PLoS One. 2014;9:e105151.
PubMed Text format Abstract available

TANTOSO E, Wong LP, Li B, Saw WY, et al
Evaluating the coverage and potential of imputing the exome microarray with next-generation imputation using the 1000 Genomes Project.
PLoS One. 2014;9:e106681.
PubMed Text format Abstract available

SARKAR T, Bansal R, Das P
Whole genome sequencing reveals novel non-synonymous mutation in ectodysplasin A (EDA) associated with non-syndromic X-linked dominant congenital tooth agenesis.
PLoS One. 2014;9:e106811.
PubMed Text format Abstract available

CHINELLO C, Cazzaniga M, De Sio G, Smith AJ, et al
Urinary signatures of Renal Cell Carcinoma investigated by peptidomic approaches.
PLoS One. 2014;9:e106684.
PubMed Text format Abstract available

CHEN J, Liu TW, Hu WJ, Simon M, et al
Comparative proteomic analysis of differentially expressed proteins induced by hydrogen sulfide in Spinacia oleracea leaves.
PLoS One. 2014;9:e105400.
PubMed Text format Abstract available

CERAME B, Cox JA, Brumfield RT, Tucker JW, et al
Adaptation to ephemeral habitat may overcome natural barriers and severe habitat fragmentation in a fire-dependent species, the Bachman's Sparrow (Peucaea aestivalis).
PLoS One. 2014;9:e105782.
PubMed Text format Abstract available

GONG SP, Kim B, Kwon HS, Yang WS, et al
The co-injection of somatic cells with embryonic stem cells affects teratoma formation and the properties of teratoma-derived stem cell-like cells.
PLoS One. 2014;9:e105975.
PubMed Text format Abstract available

STOELTING RE, Measey GJ, Drewes RC
Population genetics of the Sao Tome caecilian (Gymnophiona: Dermophiidae: Schistometopum thomense) reveals strong geographic structuring.
PLoS One. 2014;9:e104628.
PubMed Text format Abstract available

RAKSHIT H, Rathi N, Roy D
Construction and analysis of the protein-protein interaction networks based on gene expression profiles of Parkinson's disease.
PLoS One. 2014;9:e103047.
PubMed Text format Abstract available

RILEY BE, Gardai SJ, Emig-Agius D, Bessarabova M, et al
Systems-based analyses of brain regions functionally impacted in Parkinson's disease reveals underlying causal mechanisms.
PLoS One. 2014;9:e102909.
PubMed Text format Abstract available

LU L, Lycett SJ, Leigh Brown AJ
Determining the Phylogenetic and Phylogeographic Origin of Highly Pathogenic Avian Influenza (H7N3) in Mexico.
PLoS One. 2014;9:e107330.
PubMed Text format Abstract available

LIM SW, Won HH, Kim H, Myung W, et al
Genetic prediction of antidepressant drug response and nonresponse in Korean patients.
PLoS One. 2014;9:e107098.
PubMed Text format Abstract available

HAN D, Tang H, Lu J, Wang G, et al
Population structure of clinical Vibrio parahaemolyticus from 17 coastal countries, determined through multilocus sequence analysis.
PLoS One. 2014;9:e107371.
PubMed Text format Abstract available

HUSTOFT HK, Vehus T, Brandtzaeg OK, Krauss S, et al
Open tubular lab-on-column/mass spectrometry for targeted proteomics of nanogram sample amounts.
PLoS One. 2014;9:e106881.
PubMed Text format Abstract available

BOYLE KE, Hwang H, Janssen RC, DeVente JM, et al
Gestational diabetes is characterized by reduced mitochondrial protein expression and altered calcium signaling proteins in skeletal muscle.
PLoS One. 2014;9:e106872.
PubMed Text format Abstract available

TUN AW, Chaiyarit S, Kaewsutthi S, Katanyoo W, et al
Profiling the mitochondrial proteome of Leber's Hereditary Optic Neuropathy (LHON) in Thailand: down-regulation of bioenergetics and mitochondrial protein quality control pathways in fibroblasts with the 11778G>A mutation.
PLoS One. 2014;9:e106779.
PubMed Text format Abstract available

VAN RAEMDONCK GA, Tjalma WA, Coen EP, Depuydt CE, et al
Identification of protein biomarkers for cervical cancer using human cervicovaginal fluid.
PLoS One. 2014;9:e106488.
PubMed Text format Abstract available

ZHOU X, Liu B, Shi C, Shi X, et al
Mutation of a Salmonella serogroup-C1-specific gene abrogates O7-antigen biosynthesis and triggers NaCl-dependent motility deficiency.
PLoS One. 2014;9:e106708.
PubMed Text format Abstract available

XING J, Gao H, Wu Y, Wu Y, et al
Generalized linear model for mapping discrete trait loci implemented with LASSO algorithm.
PLoS One. 2014;9:e106985.
PubMed Text format Abstract available

GEHARA M, Crawford AJ, Orrico VG, Rodriguez A, et al
High levels of diversity uncovered in a widespread nominal taxon: continental phylogeography of the neotropical tree frog Dendropsophus minutus.
PLoS One. 2014;9:e103958.
PubMed Text format Abstract available

ILMBERGER N, Gullert S, Dannenberg J, Rabausch U, et al
A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes.
PLoS One. 2014;9:e106707.
PubMed Text format Abstract available

PILCHER W, Miles S, Tang S, Mayer G, et al
Genomic and genotoxic responses to controlled weathered-oil exposures confirm and extend field studies on impacts of the Deepwater Horizon oil spill on native killifish.
PLoS One. 2014;9:e106351.
PubMed Text format Abstract available

ZHANG H, Chen X, Braithwaite D, He Z, et al
Phylogenetic and metagenomic analyses of substrate-dependent bacterial temporal dynamics in microbial fuel cells.
PLoS One. 2014;9:e107460.
PubMed Text format Abstract available

AN L, Pookhao N, Jiang H, Xu J, et al
Statistical approach of functional profiling for a microbial community.
PLoS One. 2014;9:e106588.
PubMed Text format Abstract available

WILDEY G, Chen Y, Lent I, Stetson L, et al
Pharmacogenomic approach to identify drug sensitivity in small-cell lung cancer.
PLoS One. 2014;9:e106784.
PubMed Text format Abstract available

LAI Q, Liu Y, Yuan J, Du J, et al
Multilocus sequence analysis for assessment of phylogenetic diversity and biogeography in Thalassospira bacteria from diverse marine environments.
PLoS One. 2014;9:e106353.
PubMed Text format Abstract available

HARRISON E, Trexler JC, Collins TM, Vazquez-Dominguez E, et al
Genetic evidence for multiple sources of the non-native fish Cichlasoma urophthalmus (Gunther; Mayan Cichlids) in southern Florida.
PLoS One. 2014;9:e104173.
PubMed Text format Abstract available

ALI S, Steinmetz G, Montillet G, Perrard MH, et al
Exposure to low-dose bisphenol A impairs meiosis in the rat seminiferous tubule culture model: a physiotoxicogenomic approach.
PLoS One. 2014;9:e106245.
PubMed Text format Abstract available

ALMONTASHIRI NA, Vilmundarson RO, Ghasemzadeh N, Dandona S, et al
Plasma PCSK9 Levels Are Elevated with Acute Myocardial Infarction in Two Independent Retrospective Angiographic Studies.
PLoS One. 2014;9:e106294.
PubMed Text format Abstract available

TUDA M, Kagoshima K, Toquenaga Y, Arnqvist G, et al
Global genetic differentiation in a cosmopolitan pest of stored beans: effects of geography, host-plant usage and anthropogenic factors.
PLoS One. 2014;9:e106268.
PubMed Text format Abstract available

BOISSERIE JR, Souron A, Mackaye HT, Likius A, et al
A new species of Nyanzachoerus (Cetartiodactyla: Suidae) from the late Miocene Toros-Menalla, Chad, central Africa.
PLoS One. 2014;9:e103221.
PubMed Text format Abstract available

ISLAM MA, Waller AS, Hug LA, Provart NJ, et al
New insights into Dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes.
PLoS One. 2014;9:e94808.
PubMed Text format Abstract available

KETTLES NL, Kopriva S, Malin G
Insights into the regulation of DMSP synthesis in the diatom Thalassiosira pseudonana through APR activity, proteomics and gene expression analyses on cells acclimating to changes in salinity, light and nitrogen.
PLoS One. 2014;9:e94795.
PubMed Text format Abstract available

FREGEL R, Seetah K, Betancor E, Suarez NM, et al
Multiple ethnic origins of mitochondrial DNA lineages for the population of Mauritius.
PLoS One. 2014;9:e93294.
PubMed Text format Abstract available

SARGSYAN O
A Framework Including Recombination for Analyzing the Dynamics of Within-Host HIV Genetic Diversity.
PLoS One. 2014;9:e87655.
PubMed Text format Abstract available

SATTEN GA, Allen AS, Ikeda M, Mulle JG, et al
Robust regression analysis of copy number variation data based on a univariate score.
PLoS One. 2014;9:e86272.
PubMed Text format Abstract available

HINDERHOFER K, Fischer C, Pfarr N, Szamalek-Hoegel J, et al
Identification of a New Intronic BMPR2-Mutation and Early Diagnosis of Heritable Pulmonary Arterial Hypertension in a Large Family with Mean Clinical Follow-Up of 12 Years.
PLoS One. 2014;9:e91374.
PubMed Text format Abstract available

ZHANG BC, Zhang J, Sun L
Streptococcus iniae SF1: Complete Genome Sequence, Proteomic Profile, and Immunoprotective Antigens.
PLoS One. 2014;9:e91324.
PubMed Text format Abstract available

LEE S, Lee K, Yoon S, Lee JW, et al
Anomalies in network bridges involved in bile Acid metabolism predict outcomes of colorectal cancer patients.
PLoS One. 2014;9:e107925.
PubMed Text format Abstract available

LONG R, Niruban S, Heffernan C, Cooper R, et al
A 10-Year Population Based Study of 'Opt-Out' HIV Testing of Tuberculosis Patients in Alberta, Canada: National Implications.
PLoS One. 2014;9:e98993.
PubMed Text format Abstract available

XIONG J, Bing Z, Su Y, Deng D, et al
An Integrated mRNA and microRNA Expression Signature for Glioblastoma Multiforme Prognosis.
PLoS One. 2014;9:e98419.
PubMed Text format Abstract available

MORTON CO, Fliesser M, Dittrich M, Mueller T, et al
Gene Expression Profiles of Human Dendritic Cells Interacting with Aspergillus fumigatus in a Bilayer Model of the Alveolar Epithelium/Endothelium Interface.
PLoS One. 2014;9:e98279.
PubMed Text format Abstract available

YAN LR, Wang DX, Liu H, Zhang XX, et al
A Pro-Atherogenic HDL Profile in Coronary Heart Disease Patients: An iTRAQ Labelling-Based Proteomic Approach.
PLoS One. 2014;9:e98368.
PubMed Text format Abstract available

KUMMER S, Flottmann M, Schwanhausser B, Sieben C, et al
Alteration of Protein Levels during Influenza Virus H1N1 Infection in Host Cells: A Proteomic Survey of Host and Virus Reveals Differential Dynamics.
PLoS One. 2014;9:e94257.
PubMed Text format Abstract available

SHEEHAN VA, Crosby JR, Sabo A, Mortier NA, et al
Whole exome sequencing identifies novel genes for fetal hemoglobin response to hydroxyurea in children with sickle cell anemia.
PLoS One. 2014;9:e110740.
PubMed Text format Abstract available

AUTELITANO F, Loyaux D, Roudieres S, Deon C, et al
Identification of novel tumor-associated cell surface sialoglycoproteins in human glioblastoma tumors using quantitative proteomics.
PLoS One. 2014;9:e110316.
PubMed Text format Abstract available

BUSKIRK AD, Green BJ, Lemons AR, Nayak AP, et al
A Murine Inhalation Model to Characterize Pulmonary Exposure to Dry Aspergillus fumigatus Conidia.
PLoS One. 2014;9:e109855.
PubMed Text format Abstract available

NISHIDA Y, Aida K, Kihara M, Kobayashi T, et al
Antibody-validated proteins in inflamed islets of fulminant type 1 diabetes profiled by laser-capture microdissection followed by mass spectrometry.
PLoS One. 2014;9:e107664.
PubMed Text format Abstract available

MOREIRA DP, Griesi-Oliveira K, Bossolani-Martins AL, Lourenco NC, et al
Investigation of 15q11-q13, 16p11.2 and 22q13 CNVs in Autism Spectrum Disorder Brazilian Individuals with and without Epilepsy.
PLoS One. 2014;9:e107705.
PubMed Text format Abstract available

DONG Y, Li P, Ni Y, Zhao J, et al
Decreased MicroRNA-125a-3p Contributes to Upregulation of p38 MAPK in Rat Trigeminal Ganglions with Orofacial Inflammatory Pain.
PLoS One. 2014;9:e111594.
PubMed Text format Abstract available

WANG J, Wang X, Zhao M, Choo SP, et al
Potentially Functional SNPs (pfSNPs) as Novel Genomic Predictors of 5-FU Response in Metastatic Colorectal Cancer Patients.
PLoS One. 2014;9:e111694.
PubMed Text format Abstract available

OGUSU N, Saruwatari J, Nakashima H, Noai M, et al
Impact of the Superoxide Dismutase 2 Val16Ala Polymorphism on the Relationship between Valproic Acid Exposure and Elevation of gamma-Glutamyltransferase in Patients with Epilepsy: A Population Pharmacokinetic-Pharmacodynamic Analysis.
PLoS One. 2014;9:e111066.
PubMed Text format Abstract available

GAMEZ-POZO A, Perez Carrion RM, Manso L, Crespo C, et al
The Long-HER Study: Clinical and Molecular Analysis of Patients with HER2+ Advanced Breast Cancer Who Become Long-Term Survivors with Trastuzumab-Based Therapy.
PLoS One. 2014;9:e109611.
PubMed Text format Abstract available

KIM JH, Song P, Lim H, Lee JH, et al
Gene-based rare allele analysis identified a risk gene of Alzheimer's disease.
PLoS One. 2014;9:e107983.
PubMed Text format Abstract available

SLEDDERING MA, Markvoort AJ, Dharuri HK, Jeyakar S, et al
Proteomic Analysis in Type 2 Diabetes Patients before and after a Very Low Calorie Diet Reveals Potential Disease State and Intervention Specific Biomarkers.
PLoS One. 2014;9:e112835.
PubMed Text format Abstract available

MORISAKI T, Yashiro M, Kakehashi A, Inagaki A, et al
Comparative Proteomics Analysis of Gastric Cancer Stem Cells.
PLoS One. 2014;9:e110736.
PubMed Text format Abstract available

ARICO A, Ferraresso S, Bresolin S, Marconato L, et al
Array-based comparative genomic hybridization analysis reveals chromosomal copy number aberrations associated with clinical outcome in canine diffuse large B-cell lymphoma.
PLoS One. 2014;9:e111817.
PubMed Text format Abstract available

PENARETE-VARGAS DM, Boisson A, Urbach S, Chantelauze H, et al
A Chemical Proteomics Approach for the Search of Pharmacological Targets of the Antimalarial Clinical Candidate Albitiazolium in Plasmodium falciparum Using Photocrosslinking and Click Chemistry.
PLoS One. 2014;9:e113918.
PubMed Text format Abstract available

ZAMAN N, Giannopoulos PN, Chowdhury S, Bonneil E, et al
Proteomic-Coupled-Network Analysis of T877A-Androgen Receptor Interactomes Can Predict Clinical Prostate Cancer Outcomes between White (Non-Hispanic) and African-American Groups.
PLoS One. 2014;9:e113190.
PubMed Text format Abstract available

RASMUSSEN G, Monecke S, Brus O, Ehricht R, et al
Long Term Molecular Epidemiology of Methicillin-Susceptible Staphylococcus aureus Bacteremia Isolates in Sweden.
PLoS One. 2014;9:e114276.
PubMed Text format Abstract available

BARTOLO I, Zakovic S, Martin F, Palladino C, et al
HIV-1 Diversity, Transmission Dynamics and Primary Drug Resistance in Angola.
PLoS One. 2014;9:e113626.
PubMed Text format Abstract available

DE PINA-ARAUJO II, Guimaraes ML, Bello G, Vicente AC, et al
Profile of the HIV Epidemic in Cape Verde: Molecular Epidemiology and Drug Resistance Mutations among HIV-1 and HIV-2 Infected Patients from Distinct Islands of the Archipelago.
PLoS One. 2014;9:e96201.
PubMed Text format Abstract available

CHEN P, Wang L, Wang Y, Li S, et al
Phosphoproteomic profiling of selenate-treated Alzheimer's disease model cells.
PLoS One. 2014;9:e113307.
PubMed Text format Abstract available

YANG Y, Yuanye D, Qing L, Jinjian L, et al
Complete Chloroplast Genome Sequence of Poisonous and Medicinal Plant Datura stramonium: Organizations and Implications for Genetic Engineering.
PLoS One. 2014;9:e110656.
PubMed Text format Abstract available

BAUMERT J, Huang J, McKnight B, Sabater-Lleal M, et al
No Evidence for Genome-Wide Interactions on Plasma Fibrinogen by Smoking, Alcohol Consumption and Body Mass Index: Results from Meta-Analyses of 80,607 Subjects.
PLoS One. 2014;9:e111156.
PubMed Text format Abstract available

WANG S, Wei W, Luo X, Cai X, et al
Genome-Wide Comparisons of Phylogenetic Similarities between Partial Genomic Regions and the Full-Length Genome in Hepatitis E Virus Genotyping.
PLoS One. 2014;9:e115785.
PubMed Text format Abstract available

AL BAQLANI SA, Sy BT, Ratsch BA, Al Naamani K, et al
Molecular Epidemiology and Genotyping of Hepatitis B Virus of HBsAg-Positive Patients in Oman.
PLoS One. 2014;9:e97759.
PubMed Text format Abstract available

BONDAR G, Cadeiras M, Wisniewski N, Maque J, et al
Comparison of Whole Blood and Peripheral Blood Mononuclear Cell Gene Expression for Evaluation of the Perioperative Inflammatory Response in Patients with Advanced Heart Failure.
PLoS One. 2014;9:e115097.
PubMed Text format Abstract available

SABOL M, Trnski D, Uzarevic Z, Ozretic P, et al
Combination of Cyclopamine and Tamoxifen Promotes Survival and Migration of MCF-7 Breast Cancer Cells - Interaction of Hedgehog-Gli and Estrogen Receptor Signaling Pathways.
PLoS One. 2014;9:e114510.
PubMed Text format Abstract available

ALCOLEA PJ, Alonso A, Garcia-Tabares F, Torano A, et al
An Insight into the Proteome of Crithidia fasciculata Choanomastigotes as a Comparative Approach to Axenic Growth, Peanut Lectin Agglutination and Differentiation of Leishmania spp. Promastigotes.
PLoS One. 2014;9:e113837.
PubMed Text format Abstract available

LIANG JW, Shi ZZ, Shen TY, Che X, et al
Identification of Genomic Alterations in Pancreatic Cancer Using Array-Based Comparative Genomic Hybridization.
PLoS One. 2014;9:e114616.
PubMed Text format Abstract available

BANERJEE P, Mondal RK, Nandi M, Ghosh S, et al
A rare HBV subgenotype d4 with unique genomic signatures identified in north-eastern India -an emerging clinical challenge?
PLoS One. 2014;9:e109425.
PubMed Text format Abstract available

HEYLEN E, Batoko Likele B, Zeller M, Stevens S, et al
Rotavirus surveillance in kisangani, the democratic republic of the congo, reveals a high number of unusual genotypes and gene segments of animal origin in non-vaccinated symptomatic children.
PLoS One. 2014;9:e100953.
PubMed Text format Abstract available

DELATORRE E, Mir D, Bello G
Spatiotemporal Dynamics of the HIV-1 Subtype G Epidemic in West and Central Africa.
PLoS One. 2014;9:e98908.
PubMed Text format Abstract available

LIU J, Tong C, Liu J, Jiang Y, et al
First Insight into the Genotypic Diversity of Clinical Mycobacterium tuberculosis Isolates from Gansu Province, China.
PLoS One. 2014;9:e99357.
PubMed Text format Abstract available

JI H, Chen M, Greening DW, He W, et al
Deep Sequencing of RNA from Three Different Extracellular Vesicle (EV) Subtypes Released from the Human LIM1863 Colon Cancer Cell Line Uncovers Distinct Mirna-Enrichment Signatures.
PLoS One. 2014;9:e110314.
PubMed Text format Abstract available

HAYS T, Ma'ayan A, Clark NR, Tan CM, et al
Proteomics Analysis of the Non-Muscle Myosin Heavy Chain IIa-Enriched Actin-Myosin Complex Reveals Multiple Functions within the Podocyte.
PLoS One. 2014;9:e100660.
PubMed Text format Abstract available

AHLSTRAND E, Hellmark B, Svensson K, Soderquist B, et al
Long-Term Molecular Epidemiology of Staphylococcus epidermidis Blood Culture Isolates from Patients with Hematological Malignancies.
PLoS One. 2014;9:e99045.
PubMed Text format Abstract available

EMIG-AGIUS D, Olivieri K, Pache L, Shih HL, et al
An Integrated Map of HIV-Human Protein Complexes that Facilitate Viral Infection.
PLoS One. 2014;9:e96687.
PubMed Text format Abstract available

OBRY A, Lequerre T, Hardouin J, Boyer O, et al
Identification of S100A9 as Biomarker of Responsiveness to the Methotrexate/Etanercept Combination in Rheumatoid Arthritis Using a Proteomic Approach.
PLoS One. 2014;9:e115800.
PubMed Text format Abstract available

WANG L, Xiao Y, Ping Y, Li J, et al
Integrating multi-omics for uncovering the architecture of cross-talking pathways in breast cancer.
PLoS One. 2014;9:e104282.
PubMed Text format Abstract available

LIMA LEITE A, Gualiume Vaz Madureira Lobo J, Barbosa da Silva Pereira HA, Silva Fernandes M, et al
Proteomic analysis of gastrocnemius muscle in rats with streptozotocin-induced diabetes and chronically exposed to fluoride.
PLoS One. 2014;9:e106646.
PubMed Text format Abstract available

PORTMAN N, Gull K
Identification of Paralogous Life-Cycle Stage Specific Cytoskeletal Proteins in the Parasite Trypanosoma brucei.
PLoS One. 2014;9:e106777.
PubMed Text format Abstract available

MORI K, Kitazawa R, Kondo T, Mori M, et al
Diabetic Osteopenia by Decreased beta-Catenin Signaling Is Partly Induced by Epigenetic Derepression of sFRP-4 Gene.
PLoS One. 2014;9:e102797.
PubMed Text format Abstract available

RITCHIE SR, Thomas MG, Rainey PB
The Genetic Structure of Staphylococcus aureus Populations from the Southwest Pacific.
PLoS One. 2014;9:e100300.
PubMed Text format Abstract available

GUERBOUJ S, Djilani F, Bettaieb J, Lambson B, et al
Evaluation of a gp63-PCR Based Assay as a Molecular Diagnosis Tool in Canine Leishmaniasis in Tunisia.
PLoS One. 2014;9:e105419.
PubMed Text format Abstract available

LAGO BV, Mello FC, Kramvis A, Niel C, et al
Hepatitis B Virus Subgenotype A1: Evolutionary Relationships between Brazilian, African and Asian Isolates.
PLoS One. 2014;9:e105317.
PubMed Text format Abstract available

SHIOTA S, Suzuki R, Matsuo Y, Miftahussurur M, et al
Helicobacter pylori from Gastric Cancer and Duodenal Ulcer Show Same Phylogeographic Origin in the Andean Region in Colombia.
PLoS One. 2014;9:e105392.
PubMed Text format Abstract available

SIMEONE P, Trerotola M, Urbanella A, Lattanzio R, et al
A unique four-hub protein cluster associates to glioblastoma progression.
PLoS One. 2014;9:e103030.
PubMed Text format Abstract available

ZIEGLER YS, Moresco JJ, Tu PG, Yates JR 3rd, et al
Plasma membrane proteomics of human breast cancer cell lines identifies potential targets for breast cancer diagnosis and treatment.
PLoS One. 2014;9:e102341.
PubMed Text format Abstract available

ISMAIL F, Couvin D, Farakhin I, Abdul Rahman Z, et al
Study of Mycobacterium tuberculosis Complex Genotypic Diversity in Malaysia Reveals a Predominance of Ancestral East-African-Indian Lineage with a Malaysia-Specific Signature.
PLoS One. 2014;9:e114832.
PubMed Text format Abstract available

LEONG TL, Marini KD, Rossello FJ, Jayasekara SN, et al
Genomic Characterisation of Small Cell Lung Cancer Patient-Derived Xenografts Generated from Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration Specimens.
PLoS One. 2014;9:e106862.
PubMed Text format Abstract available

RAO VR, Neogi U, Eugenin E, Prasad VR, et al
The gp120 Protein Is a Second Determinant of Decreased Neurovirulence of Indian HIV-1C Isolates Compared to Southern African HIV-1C Isolates.
PLoS One. 2014;9:e107074.
PubMed Text format Abstract available

ALLAN RN, Skipp P, Jefferies J, Clarke SC, et al
Pronounced Metabolic Changes in Adaptation to Biofilm Growth by Streptococcus pneumoniae.
PLoS One. 2014;9:e107015.
PubMed Text format Abstract available

TAKAHASHI H, Sai K, Saito Y, Kaniwa N, et al
Application of a combination of a knowledge-based algorithm and 2-stage screening to hypothesis-free genomic data on irinotecan-treated patients for identification of a candidate single nucleotide polymorphism related to an adverse effect.
PLoS One. 2014;9:e105160.
PubMed Text format Abstract available

YANG M, Zhong J, Zhao M, Wang J, et al
Overexpression of Nuclear Apoptosis-Inducing Factor 1 Altered the Proteomic Profile of Human Gastric Cancer Cell MKN45 and Induced Cell Cycle Arrest at G1/S Phase.
PLoS One. 2014;9:e100216.
PubMed Text format Abstract available

BRITTON D, Zen Y, Quaglia A, Selzer S, et al
Quantification of pancreatic cancer proteome and phosphorylome: indicates molecular events likely contributing to cancer and activity of drug targets.
PLoS One. 2014;9:e90948.
PubMed Text format Abstract available

WELINDER C, Jonsson GB, Ingvar C, Lundgren L, et al
Analysis of Alpha-Synuclein in Malignant Melanoma - Development of a SRM Quantification Assay.
PLoS One. 2014;9:e110804.
PubMed Text format Abstract available

SUI Z, Wen B, Gao Z, Chen Q, et al
Fusion-Related Host Proteins Are Actively Regulated by NA during Influenza Infection as Revealed by Quantitative Proteomics Analysis.
PLoS One. 2014;9:e105947.
PubMed Text format Abstract available

ARNER E, Forrest AR, Ehrlund A, Mejhert N, et al
Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells.
PLoS One. 2014;9:e80274.
PubMed Text format Abstract available

SARGEANT DP, Hedden MW, Deverasetty S, Strong CL, et al
The Geogenomic Mutational Atlas of Pathogens (GoMAP) Web System.
PLoS One. 2014;9:e92877.
PubMed Text format Abstract available

LABBE A, Ganopolsky JG, Martoni CJ, Prakash S, et al
Bacterial Bile Metabolising Gene Abundance in Crohn's, Ulcerative Colitis and Type 2 Diabetes Metagenomes.
PLoS One. 2014;9:e115175.
PubMed Text format Abstract available

JOVCEVSKA I, Zupanec N, Kocevar N, Cesselli D, et al
TRIM28 and beta-Actin Identified via Nanobody-Based Reverse Proteomics Approach as Possible Human Glioblastoma Biomarkers.
PLoS One. 2014;9:e113688.
PubMed Text format Abstract available

WOJTALEWICZ N, Sadeqzadeh E, Weiss JV, Tehrani MM, et al
A Soluble Form of the Giant Cadherin Fat1 Is Released from Pancreatic Cancer Cells by ADAM10 Mediated Ectodomain Shedding.
PLoS One. 2014;9:e90461.
PubMed Text format Abstract available

NI X, Zhang J
Association between 9p21 Genomic Markers and Ischemic Stroke Risk: Evidence Based on 21 Studies.
PLoS One. 2014;9:e90255.
PubMed Text format Abstract available

GARRISI VM, Strippoli S, De Summa S, Pinto R, et al
Proteomic Profile and In Silico Analysis in Metastatic Melanoma with and without BRAF Mutation.
PLoS One. 2014;9:e112025.
PubMed Text format Abstract available

OLSEN PA, Solberg NT, Lund K, Vehus T, et al
Implications of Targeted Genomic Disruption of beta-Catenin in BxPC-3 Pancreatic Adenocarcinoma Cells.
PLoS One. 2014;9:e115496.
PubMed Text format Abstract available

XU T, Pang Q, Zhou D, Zhang A, et al
Proteomic Investigation into Betulinic Acid-Induced Apoptosis of Human Cervical Cancer HeLa Cells.
PLoS One. 2014;9:e105768.
PubMed Text format Abstract available

Thank you for your interest in scientific medicine.

AMEDEO Genetics is free of charge.
This policy is made possible thanks to a media sponsorship by Boehringer Ingelheim.

Design: