: The AMEDEO Literature Guide

Home The Word Brain

My Amedeo

FAQ

Privacy

About

C49

In our changing world, speaking just English isn't enough. Open new doors with skills in another world language.

Start with 7 words a day.

Next week: +49.

Genetics

Free Subscription

Articles published in PLoS One
Retrieve available abstracts of 452 articles:
HTML format

Single Articles

January 2025

MAHAMAN MOURTALA IZ, Gouda AC, Baina DJ, Maxwell NII, et al
Genetic diversity and population structure studies of West African sweetpotato [Ipomoea batatas (L.) Lam] collection using DArTseq.
PLoS One. 2025;20:e0312384.
PubMed Abstract available

REED LK, Kleinschmit AJ, Buonaccorsi V, Hunt AG, et al
A genomics learning framework for undergraduates.
PLoS One. 2025;20:e0313124.
PubMed Abstract available

PERVEEN A, Sheheryar S, Ahmad F, Mustafa G, et al
Integrative physiological, biochemical, and proteomic analysis of the leaves of two cotton genotypes under heat stress.
PLoS One. 2025;20:e0316630.
PubMed Abstract available

GUARNIERO I, Stancampiano L, Franch R, Armaroli E, et al
Genetic variability and population structure analysis of Protostrongylus oryctolagi (Nematoda: Protostrongylidae) in Lepus europaeus from Central and Northern Italy.
PLoS One. 2025;20:e0313998.
PubMed Abstract available

TREJO-SALAZAR RE, Gasca-Pineda J, Hernandez-Bolanos K, Hernandez-Rosales DC, et al
High genetic variation, low differentiation, and Pleistocene expansions of the migratory and endangered long-nosed tequila bat, Leptonycteris nivalis, inferred using both maternal and paternal genetic markers.
PLoS One. 2025;20:e0316530.
PubMed Abstract available

TAL O, Zahavi T, Sinberger LA, Salmon-Divon M, et al
Unlocking prognostic potential: A genomic signature of caloric restriction in patients with epithelial ovarian cancer.
PLoS One. 2025;20:e0317502.
PubMed Abstract available

PATIL A, Vidhate P, Patil S, Rao A, et al
Looking back into the Hepatitis C Virus epidemic dynamics from Unnao, India through phylogenetic approach.
PLoS One. 2025;20:e0317705.
PubMed Abstract available

AO Y, Lan Q, Yu T, Wang Z, et al
Cellular senescence-associated genes in rheumatoid arthritis: Identification and functional analysis.
PLoS One. 2025;20:e0317364.
PubMed Abstract available

CHAHARLASHKAR Z, Saeedi Honar Y, Abdollahpour-Alitappeh M, Parvizpour S, et al
Metastatic melanoma: An integrated analysis to identify critical regulators associated with prognosis, pathogenesis and targeted therapies.
PLoS One. 2025;20:e0312754.
PubMed Abstract available

HOHAN R, Surleac M, Miron VD, Tudor A, et al
Ongoing measles outbreak in Romania: Clinical investigation and molecular epidemiology performed on whole genome sequences.
PLoS One. 2025;20:e0317045.
PubMed Abstract available

GERMITSCH N, Kockmann T, Schnyder M, Tritten L, et al
N-terminomics profiling of host proteins targeted by excretory-secretory proteases of the nematode Angiostrongylus vasorum identifies points of interaction with canine coagulation and complement cascade.
PLoS One. 2025;20:e0316217.
PubMed Abstract available

JABBAR MH, Atif FA, Kashif M, Ahmed I, et al
Molecular epidemiology and phylogenetic insights of lumpy skin disease in cattle from diverse agro-ecological regions of Punjab, Pakistan.
PLoS One. 2025;20:e0315532.
PubMed Abstract available

XU M, Yuan S, Luo X, Xu M, et al
Construction of an lncRNA-mediated ceRNA network to investigate the inflammatory regulatory mechanisms of ischemic stroke.
PLoS One. 2025;20:e0317710.
PubMed Abstract available

LI H, Zhang L, Han X, Zhang Q, et al
Tandem mass tag-based quantitative proteomics and targeted hormone analysis reveal the response to insect herbivory stress in Ginseng (Panax ginseng, L.).
PLoS One. 2025;20:e0316032.
PubMed Abstract available

SUMMER K, Guo Q, Liu L, Barkla B, et al
Antimicrobial proteins from oyster hemolymph improve the efficacy of conventional antibiotics.
PLoS One. 2025;20:e0312305.
PubMed Abstract available

MUKHEBI DW, Gachanja PW, Karan DJ, Kamau BM, et al
DArTseq-based silicoDArT and SNP markers reveal the genetic diversity and population structure of Kenyan cashew (Anacardium occidentale L.) landraces.
PLoS One. 2025;20:e0313850.
PubMed Abstract available

SILVA ACD, Gregorio da Silva DC, Ferreira EGC, Abdelnoor RV, et al
Genetic diversity, population structure in a historical panel of Brazilian soybean cultivars.
PLoS One. 2025;20:e0313151.
PubMed Abstract available

ECHANIZ-AVILES G, Nunez-Garcia LA, Rodriguez-Noriega E, Velazquez-Acosta C, et al
Genomic characteristics and molecular epidemiology of MRSA from medical centers in Mexico: Results from the Invifar network.
PLoS One. 2025;20:e0317284.
PubMed Abstract available

TAOKA M, Kuwana R, Murakami Y, Kashima A, et al
The ionic liquid-assisted sample preparation method pTRUST allows sensitive proteome characterization of a variety of bacterial endospores to aid in the search for protein biomarkers.
PLoS One. 2025;20:e0318186.
PubMed Abstract available

GUNUNDU R, Shimelis H, Tesfamariam SA
Genetic diversity and population structure analyses of tropical maize inbred lines using Single Nucleotide Polymorphism markers.
PLoS One. 2025;20:e0315463.
PubMed Abstract available

HICKMAN E, Carberry V, Carberry C, Cooper B, et al
Respiratory extracellular vesicle isolation optimization through proteomic profiling of equine samples and identification of candidates for cell-of-origin studies.
PLoS One. 2025;20:e0315743.
PubMed Abstract available

SUNMONU GT, Adzitey F, Odih EE, Tibile BA, et al
Genomic characterization of foodborne Salmonella enterica and Escherichia coli isolates from Saboba district and Bolgatanga Municipality Ghana.
PLoS One. 2025;20:e0315583.
PubMed Abstract available

QIU LX, Yu Q, Zhou HQ, Fan WH, et al
TMT-based quantitative proteomics reveals the genetic mechanisms of secondary hair follicle development in fine-wool sheep.
PLoS One. 2025;20:e0315637.
PubMed Abstract available

NAZ H, Timotheous R, Sarwar MF, Nadeem T, et al
Utilizing the subtractive proteomics approach to design ensemble vaccine against Candida lusitaniae for immune response stimulation; a bioinformatics study.
PLoS One. 2025;20:e0316264.
PubMed Abstract available

KUCZYNSKA A, Michalek M, Ogrodowicz P, Kempa M, et al
Disorders in brassinosteroids signal transduction triggers the profound molecular alterations in the crown tissue of barley under drought.
PLoS One. 2025;20:e0318281.
PubMed Abstract available

CORTES-HERNANDEZ JG, Garcia-Ruiz A, Penagaricano F, Montaldo HH, et al
Uncovering the genetic basis of milk production traits in Mexican Holstein cattle based on individual markers and genomic windows.
PLoS One. 2025;20:e0314888.
PubMed Abstract available

MILES LS, Carlen EJ, Nassrullah Z, Munshi-South J, et al
No detectable effect of urbanization on genetic drift or gene flow in specialist herbivorous insects of milkweed.
PLoS One. 2025;20:e0318956.
PubMed Abstract available

LI Q, Wu X, Niu X, Yu Z, et al
Integrated metagenomic and metabolomic analyses of the effects of total flavonoids of Rhizoma Drynariae on reducing ovariectomized-induced osteoporosis by regulating gut microbiota and related metabolites.
PLoS One. 2025;20:e0317832.
PubMed Abstract available

REISS RA, Guerra PA, Makhnin O, Kellom M, et al
Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site.
PLoS One. 2025;20:e0306503.
PubMed Abstract available

LEE YB, So S, Park YJ, Kang H, et al
Genetic diversity and population structure analysis of Forsythia ovata, a Korean endemic, based on genotyping-by-sequencing.
PLoS One. 2025;20:e0317278.
PubMed Abstract available

KAMINER ABARGEL M, Macarov M, Hendler K, Yahalom C, et al
The importance of genetic counselling and testing in inherited eye diseases: A population-based retrospective study.
PLoS One. 2025;20:e0318492.
PubMed Abstract available

SCAKETTI M, Sujii PS, Alves-Pereira A, Schwarcz KD, et al
Sample Size Impact (SaSii): An R script for estimating optimal sample sizes in population genetics and population genomics studies.
PLoS One. 2025;20:e0316634.
PubMed Abstract available

PONGSANARM T, Panthum T, Budi T, Wongloet W, et al
Genetic and geographical insights call for early conservation of Mae Hong Son's blue mahseer to prevent population crisis.
PLoS One. 2025;20:e0313505.
PubMed Abstract available

HONDA K, Kajino A, Tsutsumi T
Comparative genomic profiling of SLC26A4-expressing cells in the inner ear and other organs.
PLoS One. 2025;20:e0318972.
PubMed Abstract available

LIAN K, Chen Z, Chen L, Li Y, et al
Network study of miRNA regulating traumatic heterotopic ossification.
PLoS One. 2025;20:e0318779.
PubMed Abstract available

ZHANG Z, Zhu Y, Zhang J, He W, et al
Identification of novel proteins associated with intelligence by integrating genome-wide association data and human brain proteomics.
PLoS One. 2025;20:e0319278.
PubMed Abstract available

JANSEN JA, Manukyan A, Al Khoury N, Akalin A, et al
Leveraging large language models for data analysis automation.
PLoS One. 2025;20:e0317084.
PubMed Abstract available

CHEN C, Khanthiyong B, Thaweetee-Sukjai B, Charoenlappanit S, et al
Proteomic associations with cognitive variability as measured by the Wisconsin Card Sorting Test in a healthy Thai population: A machine learning approach.
PLoS One. 2025;20:e0313365.
PubMed Abstract available

LI J, Tao L, Zhou Y, Zhu Y, et al
Identification of biomarkers in Alzheimer's disease and COVID-19 by bioinformatics combining single-cell data analysis and machine learning algorithms.
PLoS One. 2025;20:e0317915.
PubMed Abstract available

ZENG X, Xing YH, Ma XM, Long Y, et al
Proteomic and metabolomic profiling reveals the underlying molecular mechanisms in modified alternate-day fasting-mediated protection against Diabetic kidney disease.
PLoS One. 2025;20:e0319053.
PubMed Abstract available

MUKITI HM, Badu-Apraku B, Abe A, Adejumobi II, et al
Optimizing breeding strategies for early-maturing white maize through genetic diversity and population structure.
PLoS One. 2025;20:e0316793.
PubMed Abstract available

SHIN HY, Park JH, Cha KC, Kim HJ, et al
Exploratory study of serum protein biomarkers for sudden cardiac arrest using protein extension assay: A case-control study.
PLoS One. 2025;20:e0319466.
PubMed Abstract available

BURRIEL-CARRANZA B, Koppetsch T, Tabares J, Talavera A, et al
Cryptic speciation in arid mountains: An integrative revision of the Pristurus rupestris species complex (Squamata, Sphaerodactylidae) from Arabia based on morphological, genetic and genomic data, with the description of four new species.
PLoS One. 2025;20:e0315000.
PubMed Abstract available

TEKLEWOLD TH, Bogale TG, Tseganeh DG, Birara ME, et al
Genetic diversity and population structure of Ethiopian Sweet Sorghum [Sorghum bicolor (L.) Moench] germplasms using SSR markers.
PLoS One. 2025;20:e0316549.
PubMed Abstract available

HUNG LH, Fukuda B, Schmitz R, Hoang V, et al
Harmonizing and integrating the NCI Genomic Data Commons through accessible, interactive, and cloud-enabled workflows.
PLoS One. 2025;20:e0318676.
PubMed Abstract available

VAGIONA AC, Notopoulou S, Zdrahal Z, Goncalves-Kulik M, et al
Prediction of protein interactions with function in protein (de-)phosphorylation.
PLoS One. 2025;20:e0319084.
PubMed Abstract available

RIAZ R, Khan K, Aghayeva S, Uddin R, et al
Combatting antibiotic resistance in Gardnerella vaginalis: A comparative in silico investigation for drug target identification.
PLoS One. 2025;20:e0314465.
PubMed Abstract available

NICHOLAS B, Bailey A, McCann KJ, Walker RC, et al
Comparative analysis of protein expression between oesophageal adenocarcinoma and normal adjacent tissue.
PLoS One. 2025;20:e0318572.
PubMed Abstract available

TOKER TP, Ulusoy D, Dogan B, Kasapoglu S, et al
Genomic insights into Mediterranean pepper diversity using ddRADSeq.
PLoS One. 2025;20:e0318105.
PubMed Abstract available

TAO Y, Gao C, Wang J, Zhang Q, et al
Analysis of cellular senescence-related genes in calcified aortic valve disease and the potential therapeutic role of beta-Carotene.
PLoS One. 2025;20:e0318574.
PubMed Abstract available

STRILLACCI MG, Ferrulli V, Bernini F, Pravettoni D, et al
Genomic analysis of bovine respiratory disease resistance in preweaned dairy calves diagnosed by a combination of clinical signs and thoracic ultrasonography.
PLoS One. 2025;20:e0318520.
PubMed Abstract available

ABADURA NS, Abebe AT, Rabbi IY, Beyene TM, et al
DArTSNP based genetic diversity analyses in cassava (Manihote esculenta [Cranz]) genotypes sourced from different regions revealed high level of diversity within population.
PLoS One. 2025;20:e0308027.
PubMed Abstract available

BABAEI S, Varkey DA, Adamack AT, LeBlanc NM, et al
Genome-wide SNPs reveal novel genetic relationships among Atlantic cod (Gadus morhua) from the south coast of Newfoundland, Canada (subdivision 3Ps), Northern cod stock complex, and Gulf of St Lawrence.
PLoS One. 2025;20:e0317768.
PubMed Abstract available

SADONES O, Kramarska E, Sainz-Mejias M, Berisio R, et al
Identification of cross-reactive vaccine antigen candidates in Gram-positive ESKAPE pathogens through subtractive proteome analysis using opsonic sera.
PLoS One. 2025;20:e0319933.
PubMed Abstract available

EL KHOURY P, Zeidan A, Khalaf RA
Proteomic characterization of clinical Candida glabrata isolates with varying degrees of virulence and resistance to fluconazole.
PLoS One. 2025;20:e0320484.
PubMed Abstract available

MAHMUD S, Ajadee A, Sarker A, Ahmmed R, et al
Exploring common genomic biomarkers to disclose common drugs for the treatment of colorectal cancer and hepatocellular carcinoma with type-2 diabetes through transcriptomics analysis.
PLoS One. 2025;20:e0319028.
PubMed Abstract available

KITAMOTO T, Kitamoto A
Integrative proteomic and lipidomic analysis of GNB1 and SCARB2 knockdown in human subcutaneous adipocytes.
PLoS One. 2025;20:e0319163.
PubMed Abstract available

KHAN SA
Network pharmacology and in silico analysis reveal Kochiae Fructus as a potential therapeutic against atopic dermatitis through immunomodulatory pathway interactions.
PLoS One. 2025;20:e0320818.
PubMed Abstract available

LUO R, Liang Z, Chen H, Bao D, et al
Potential diagnostic markers and therapeutic targets for DM2 and periodontitis based on bioinformatics analysis.
PLoS One. 2025;20:e0320061.
PubMed Abstract available

BRANGSCH H, Marcordes S, Busch A, Weber M, et al
Comparative genomics of Mycobacterium avium subsp. hominissuis strains within a group of captive lowland tapirs.
PLoS One. 2025;20:e0320499.
PubMed Abstract available

YUN H, Seo JH, Kim YK, Yang J, et al
Examining the bacterial diversity including extracellular vesicles in air and soil: implications for human health.
PLoS One. 2025;20:e0320916.
PubMed Abstract available

PEREZ AE, Hernandez-Montelongo J, Flores MG, Rodriguez ME, et al
Revealing the ancient origins of blonde beers: Phylogeography and phylogenetics of cryotolerant fermentative yeast Saccharomyces eubayanus from pre-Hispanic pottery in Northwestern Patagonia, Argentina.
PLoS One. 2025;20:e0319938.
PubMed Abstract available

EL SHAMIEH S, Saleem RA, Hammoudi Halat D, Fakhoury HMA, et al
Integrating pharmacogenomics in three Middle Eastern countries' healthcare (Lebanon, Qatar, and Saudi Arabia): Current insights, challenges, and strategic directions.
PLoS One. 2025;20:e0319042.
PubMed Abstract available

WANG Y, Wang Z, Pan J, Wang H, et al
Reconstruction of the lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveals functional miRNAs and lncRNAs in burns and keloids.
PLoS One. 2025;20:e0320855.
PubMed Abstract available

JAGADESAN S, Guda C
MetaDAVis: An R shiny application for metagenomic data analysis and visualization.
PLoS One. 2025;20:e0319949.
PubMed Abstract available

SU Z, Ling Z, Chen H, Hu L, et al
Association between hyperlipidemia and nephrolithiasis: A comprehensive bioinformatics analysis deciphering the potential common denominator pathogenesis.
PLoS One. 2025;20:e0321734.
PubMed Abstract available

LAWSON LP, Bittencourt-Silva GB, Conradie W, Portik DM, et al
A phylogenomic perspective reveals mitochondrial-nuclear discordance and previously undescribed species nested within a widespread East African Reed frog species (Hyperolius substriatus Ahl, 1931).
PLoS One. 2025;20:e0318951.
PubMed Abstract available

HONG E, Kim HC, Lee JH, Jeong W, et al
Genetic diversity of Olive flounder (Paralichthys olivaceus) and the impact of selective breeding on Korean populations.
PLoS One. 2025;20:e0318672.
PubMed Abstract available

ZHA C, Huang A, Kailasam S, Young D, et al
Identifying putative substrates of Calpain-15 in neurodevelopment.
PLoS One. 2025;20:e0319489.
PubMed Abstract available

XIONG J, Zhang L, Xing J, Huang W, et al
Evaluation and Characterization of Acute respiratory distress syndrome in tree shrews through TMT proteomic method.
PLoS One. 2025;20:e0319752.
PubMed Abstract available

DA SILVA-ALVAREZ E, Gomez-Arrones V, Correa-Fiz F, Martin-Cano FE, et al
Metagenomic and proteomic analyses reveal similar reproductive microbial profiles and shared functional pathways in uterine immune regulation in mares and jennies.
PLoS One. 2025;20:e0321389.
PubMed Abstract available

CURATOLO M, Chiu AP, Chia C, Ward A, et al
Multi-omics profiles of chronic low back pain and fibromyalgia-Study protocol.
PLoS One. 2025;20:e0312061.
PubMed Abstract available

SZARMACH SJ, Teeter KC, M'soka J, Droge E, et al
Genetic diversity and demographic history of the largest remaining migratory population of brindled wildebeest (Connochaetes taurinus taurinus) in southern Africa.
PLoS One. 2025;20:e0310580.
PubMed Abstract available

ALNAIMAT SM, Abushattal S, Dmour SM, Al-Awaida WJ, et al
Genomic insights into the taxonomic status and bioactive gene cluster profiling of Bacillus velezensis RVMD2 isolated from desert rock varnish in Ma'an, Jordan.
PLoS One. 2025;20:e0319345.
PubMed Abstract available

LAMMERT DB, Fernandez RF, Liu X, Chen J, et al
Proteomic analysis of hippocampus reveals metabolic reprogramming in a piglet model of mild hypoxic ischemic encephalopathy.
PLoS One. 2025;20:e0320869.
PubMed Abstract available

HERNANDEZ-VALENCIA JC, Gomez GF, Correa MM
Metagenomic analysis evidences a core virome in Anopheles darlingi from three contrasting Colombian ecoregions.
PLoS One. 2025;20:e0320593.
PubMed Abstract available

CHEN C, Bao M, Zeng Y, Wang X, et al
Proteomic analysis of oat (Avena sativa L.) under drought stress using tandem mass tag labeling.
PLoS One. 2025;20:e0322022.
PubMed Abstract available

ALDA F, Mendoza-Franco EF, Hanson-Regan W, Reina RG, et al
Geography is a stronger predictor of diversification of monogenean parasites (Platyhelminthes) than host relatedness in characin fishes of Middle America.
PLoS One. 2025;20:e0316974.
PubMed Abstract available

LEVIN Y, Tickotsky N, Morgenstern D, Wolf-Levy H, et al
Cognitive decline in older adults with type 2 diabetes: Unraveling site-specific glycoproteomic alterations.
PLoS One. 2025;20:e0318916.
PubMed Abstract available

COLIN R, Aguirre-Planter E, Eguiarte LE
Genetic and ecological characterization of the giant reed (Arundo donax) in Central Mexico.
PLoS One. 2025;20:e0319214.
PubMed Abstract available

PHOCHANTACHINDA S, Photcharatinnakorn P, Chatchaisak D, Sakcamduang W, et al
Plasma-based proteomics analysis of molecular pathways in canine diabetes mellitus after astaxanthin supplementation.
PLoS One. 2025;20:e0321509.
PubMed Abstract available

JAVAROTTI NB, Ayala-Burbano PA, Pissinati A, Marques MC, et al
Genetic monitoring in ex situ populations of the endangered primate Leontopithecus chrysopygus and integrative analyses with the wild founder population.
PLoS One. 2025;20:e0322817.
PubMed Abstract available

JEGEDE A, Balogun O, Olorunsogbon OF, Nichols M, et al
Research participants' perception of ethical issues in stroke genomics and neurobiobanking research in Africa.
PLoS One. 2025;20:e0292906.
PubMed Abstract available

SHALAGINOVA I, Pavlova M, Dyuzhikova N
capital A, Cyrillicmygdala DEGs are associated with the immune system function: A comparative transcriptomic study of high- and low-excitability rat strains.
PLoS One. 2025;20:e0323325.
PubMed Abstract available

GONZALES S, Zhao JZ, Choi NY, Acharya P, et al
SOX7: Autism associated gene identified by analysis of multi-Omics data.
PLoS One. 2025;20:e0320096.
PubMed Abstract available

LOZANO-AGUIRRE L, Duran-Bedolla J, Tellez-Sosa J, Hernandez-Perez CF, et al
Genomic insights into the serovar prevalence, antimicrobial resistance gene, and genetic diversity of Salmonella enterica in Mexico.
PLoS One. 2025;20:e0323872.
PubMed Abstract available

BRAR HK, Chen E, Chang F, Lu SA, et al
Leishmania regulates host YY1: Comparative proteomic analysis identifies infection modulated YY1 dependent proteins.
PLoS One. 2025;20:e0323227.
PubMed Abstract available

KHAJORNPIPAT P, Reamtong O, Aunpad R
Rational engineering unlocks the therapeutic potential of WHP1: A revolutionary peptide poised to advance wound healing.
PLoS One. 2025;20:e0323363.
PubMed Abstract available

LLARENA AK, Haverkamp THA, Gulliksen WS, Herstad K, et al
DNA extraction protocols for animal fecal material on blood spot cards.
PLoS One. 2025;20:e0313808.
PubMed Abstract available

MIDDLETON RC, Karpov OA, Fournier M, Kreimer S, et al
Impact of cardiosphere-derived cells on the maladapted right ventricular muscle in a rat sugen/hypoxia model of pulmonary hypertension with right ventricular dysfunction.
PLoS One. 2025;20:e0321895.
PubMed Abstract available

ELKARHAT Z, Tifrouin I, Bamouh Z, Tadlaoui KO, et al
First identification of ORF virus causing contagious ecthyma in Morocco (MOR20): Genomic, phylogenetic, and sequence variants analyses for vaccine design.
PLoS One. 2025;20:e0323383.
PubMed Abstract available

XUE Q, Du L, Deng T, Liang M, et al
Integrating genomics and transcriptomics reveals candidate genes affecting loin muscle area in Huaxi cattle.
PLoS One. 2025;20:e0322026.
PubMed Abstract available

KIIGE JK, Kavoo AM, Mwajita MR, Mogire D, et al
Metagenomic characterization of bacterial abundance and diversity in potato cyst nematode suppressive and conducive potato rhizosphere.
PLoS One. 2025;20:e0323382.
PubMed Abstract available

January 2024

SRIVASTAV S, van der Graaf K, Jonnalagadda PC, Thawani M, et al
Motor neuron activity enhances the proteomic stress caused by autophagy defects in the target muscle.
PLoS One. 2024;19:e0291477.
PubMed Abstract available

SAKARIN S, Rungsipipat A, Roytrakul S, Jaresitthikunchai J, et al
Proteomic analysis of pulmonary arteries and lung tissues from dogs affected with pulmonary hypertension secondary to degenerative mitral valve disease.
PLoS One. 2024;19:e0296068.
PubMed Abstract available

ZHENG Y, Shang X
SVvalidation: A long-read-based validation method for genomic structural variation.
PLoS One. 2024;19:e0291741.
PubMed Abstract available

ZUNINO L, Cubry P, Sarah G, Mournet P, et al
Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin.
PLoS One. 2024;19:e0295043.
PubMed Abstract available

JUST U, Burtscher H, Jeratsch S, Fischer M, et al
Proteomic and transcriptomic characterisation of FIA10, a novel murine leukemic cell line that metastasizes into the brain.
PLoS One. 2024;19:e0295641.
PubMed Abstract available

NISHIMURA L, Tanino A, Ajimoto M, Katsumura T, et al
Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago.
PLoS One. 2024;19:e0295924.
PubMed Abstract available

MARIO-VASQUEZ JE, Bagal UR, Lowe E, Morgulis A, et al
Finding Candida auris in public metagenomic repositories.
PLoS One. 2024;19:e0291406.
PubMed Abstract available

LEBATTEUX D, Soudeyns H, Boucoiran I, Gantt S, et al
Machine learning-based approach KEVOLVE efficiently identifies SARS-CoV-2 variant-specific genomic signatures.
PLoS One. 2024;19:e0296627.
PubMed Abstract available

TUMLINSON AR, Calara JM, Azar DT, Adamis AP, et al
Feasibility demonstration of a device for vitreous liquid biopsy incidental to intravitreal injection.
PLoS One. 2024;19:e0294526.
PubMed Abstract available

MOINET M, Rogers L, Biggs P, Marshall J, et al
High-resolution genomic analysis to investigate the impact of the invasive brushtail possum (Trichosurus vulpecula) and other wildlife on microbial water quality assessments.
PLoS One. 2024;19:e0295529.
PubMed Abstract available

BAEK B, Jang E, Park S, Park SH, et al
Integrated drug response prediction models pinpoint repurposed drugs with effectiveness against rhabdomyosarcoma.
PLoS One. 2024;19:e0295629.
PubMed Abstract available

DUMIDAE A, Subkrasae C, Ardpairin J, Pansri S, et al
Population genetic structure of Indoplanorbis exustus (Gastropoda: Planorbidae) in Thailand and its infection with trematode cercariae.
PLoS One. 2024;19:e0297761.
PubMed Abstract available

SERINO-SILVA C, Bittencourt Rodrigues CF, Miyamoto JG, Hatakeyama DM, et al
Proteomics and life-history variability of Endogenous Phospholipases A2 Inhibitors (PLIs) in Bothrops jararaca plasma.
PLoS One. 2024;19:e0295806.
PubMed Abstract available

LIN R, Liu J, Shan S, Zhang Y, et al
Significant differences in the degree of genomic DNA N6-methyladenine modifications in Acidithiobacillus ferrooxidans with two different culture substrates.
PLoS One. 2024;19:e0298204.
PubMed Abstract available

MARTINEZ SE, Pandey AV, Perez Jimenez TE, Zhu Z, et al
Pharmacogenomics of poor drug metabolism in greyhounds: Canine P450 oxidoreductase genetic variation, breed heterogeneity, and functional characterization.
PLoS One. 2024;19:e0297191.
PubMed Abstract available

THIEL BA, Lundberg KC, Schlatzer D, Jarvela J, et al
Human alveolar macrophages display marked hypo-responsiveness to IFN-gamma in both proteomic and gene expression analysis.
PLoS One. 2024;19:e0295312.
PubMed Abstract available

FISCHER A, Sjogren KG, Jensen TZT, Jorkov ML, et al
Vittrup Man-The life-history of a genetic foreigner in Neolithic Denmark.
PLoS One. 2024;19:e0297032.
PubMed Abstract available

SIAU JW, Siddiqui AA, Lau SY, Kannan S, et al
Expanding the DNA editing toolbox: Novel lambda integrase variants targeting microalgal and human genome sequences.
PLoS One. 2024;19:e0292479.
PubMed Abstract available

CHAUX F, Agier N, Eberhard S, Xu Z, et al
Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii.
PLoS One. 2024;19:e0297014.
PubMed Abstract available

HUBER L, Kuropka B, Doulidis PG, Baszler E, et al
Plasma proteome signature of canine acute haemorrhagic diarrhoea syndrome (AHDS).
PLoS One. 2024;19:e0297924.
PubMed Abstract available

LOPEZ-CUAMATZI IL, Ortega J, Ospina-Garces SM, Zuniga G, et al
Molecular and morphological data suggest a new species of big-eared bat (Vespertilionidae: Corynorhinus) endemic to northeastern Mexico.
PLoS One. 2024;19:e0296275.
PubMed Abstract available

STAN A, Bosart K, Kaur M, Vo M, et al
Detection of driver mutations and genomic signatures in endometrial cancers using artificial intelligence algorithms.
PLoS One. 2024;19:e0299114.
PubMed Abstract available

MENARY J, Fuller SS
New genomic techniques, old divides: Stakeholder attitudes towards new biotechnology regulation in the EU and UK.
PLoS One. 2024;19:e0287276.
PubMed Abstract available

SOW MS, Togo J, Simons LM, Diallo ST, et al
Genomic characterization of SARS-CoV-2 in Guinea, West Africa.
PLoS One. 2024;19:e0299082.
PubMed Abstract available

BAZVAND B, Rashidi A, Zandi MB, Moradi MH, et al
Genome-wide analysis of population structure, effective population size and inbreeding in Iranian and exotic horses.
PLoS One. 2024;19:e0299109.
PubMed Abstract available

IACONO D, Hatch K, Murphy EK, Post J, et al
Proteomic changes in the hippocampus of large mammals after total-body low dose radiation.
PLoS One. 2024;19:e0296903.
PubMed Abstract available

POWELL SM, Jarsberg LG, Zionce ELM, Anderson LN, et al
Longitudinal analysis of host protein serum signatures of treatment and recovery in pulmonary tuberculosis.
PLoS One. 2024;19:e0294603.
PubMed Abstract available

YU SL, Mageeney CM, Shormin F, Ghaffari N, et al
Speeding genomic island discovery through systematic design of reference database composition.
PLoS One. 2024;19:e0298641.
PubMed Abstract available

HOLMES MJ, Mahjour B, Castro CP, Farnum GA, et al
HaplotagLR: An efficient and configurable utility for haplotagging long reads.
PLoS One. 2024;19:e0298688.
PubMed Abstract available

ZHANG Y, Gong S, He W, Yuan J, et al
Melatonin serves as a novel treatment in bladder fibrosis through TGF-beta1/Smad and EMT.
PLoS One. 2024;19:e0295104.
PubMed Abstract available

RONNING TG, Enger H, Afset JE, As CG, et al
Insights from a decade of surveillance: Molecular epidemiology of methicillin-resistant Staphylococcus aureus in Norway from 2008 to 2017.
PLoS One. 2024;19:e0297333.
PubMed Abstract available

BUI HTP, Huy Do D, Ly HTT, Tran KT, et al
De novo copy number variations in candidate genomic regions in patients of severe autism spectrum disorder in Vietnam.
PLoS One. 2024;19:e0290936.
PubMed Abstract available

XU S, Shiomi H, Yamashita Y, Koyama S, et al
CRISPR-Cas9-guided amplification-free genomic diagnosis for familial hypercholesterolemia using nanopore sequencing.
PLoS One. 2024;19:e0297231.
PubMed Abstract available

KARIYAWASAM DS, Scarfe J, Meagher C, Farrar MA, et al
'Integrating Ethics and Equity with Economics and Effectiveness for newborn screening in the genomic age: A qualitative study protocol of stakeholder perspectives.
PLoS One. 2024;19:e0299336.
PubMed Abstract available

MYSZCZYSZYN A, Popp O, Kunz S, Sporbert A, et al
Mice with renal-specific alterations of stem cell-associated signaling develop symptoms of chronic kidney disease but surprisingly no tumors.
PLoS One. 2024;19:e0282938.
PubMed Abstract available

PRUSOKIENE A, Boonham N, Fox A, Howard TP, et al
Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent.
PLoS One. 2024;19:e0298834.
PubMed Abstract available

NASCIMENTO PMC, Rodrigues Junior LF, Felix Mediano MF, Goncalves da Silva V, et al
Prevalence and impact of sarcopenia in individuals with heart failure with reduced ejection fraction (the SARC-HF study): A prospective observational study protocol.
PLoS One. 2024;19:e0300918.
PubMed Abstract available

D'ERCOLE J, Dapporto L, Opler P, Schmidt CB, et al
A genetic atlas for the butterflies of continental Canada and United States.
PLoS One. 2024;19:e0300811.
PubMed Abstract available

PINNELL LJ, Wolfe CA, Castle J, Crosby WB, et al
Effectiveness of stabilization methods for the immediate and short-term preservation of bovine fecal and upper respiratory tract genomic DNA.
PLoS One. 2024;19:e0300285.
PubMed Abstract available

NABUKENYA S, Kyaddondo D, Munabi IG, Waitt C, et al
The role of community engagement in promoting research participants' understanding of pharmacogenomic research results: Perspectives of stakeholders involved in HIV/AIDS research and treatment.
PLoS One. 2024;19:e0299081.
PubMed Abstract available

OKETCH JW, Wain LV, Hollox EJ
A comparison of software for analysis of rare and common short tandem repeat (STR) variation using human genome sequences from clinical and population-based samples.
PLoS One. 2024;19:e0300545.
PubMed Abstract available

QUARTON S, McGee K, Cumley N, Behruznia M, et al
Towards personalised anti-microbial and immune approaches to infections in acute care. Can real-time genomic-informed diagnosis of pathogens, and immune-focused therapies improve outcomes for patients? An observational, experimental study protocol.
PLoS One. 2024;19:e0298425.
PubMed Abstract available

SEFFERNICK AE, Archer KJ
Penalized Bayesian forward continuation ratio model with application to high-dimensional data with discrete survival outcomes.
PLoS One. 2024;19:e0300638.
PubMed Abstract available

TAYLOR JY, Jones-Patten A, Prescott L, Potts-Thompson S, et al
The race-based stress reduction intervention (RiSE) study on African American women in NYC and Chicago: Design and methods for complex genomic analysis.
PLoS One. 2024;19:e0295293.
PubMed Abstract available

BASU A, Dutta AK, Bagepally BS, Das S, et al
Pharmacogenomics-assisted schizophrenia management: A hybrid type 2 effectiveness-implementation study protocol to compare the clinical utility, cost-effectiveness, and barriers.
PLoS One. 2024;19:e0300511.
PubMed Abstract available

BRINDISI LJ, Mattera R 3rd, Mudiyala S, Honig J, et al
Genetic linkage mapping and quantitative trait locus (QTL) analysis of sweet basil (Ocimum basilicum L.) to identify genomic regions associated with cold tolerance and major volatiles.
PLoS One. 2024;19:e0299825.
PubMed Abstract available

PRICE MN, Arkin AP
A fast comparative genome browser for diverse bacteria and archaea.
PLoS One. 2024;19:e0301871.
PubMed Abstract available

PERALTA DM, Tunez JI, Rodriguez Cruz UE, Ceballos SG, et al
A rapid approach for sex assignment by RAD-seq using a reference genome.
PLoS One. 2024;19:e0297987.
PubMed Abstract available

CHOI TY, Lee SR
Complete plastid genome of Iris orchioides and comparative analysis with 19 Iris plastomes.
PLoS One. 2024;19:e0301346.
PubMed Abstract available

NOORHIDAYAH M, Azrizal-Wahid N, Low VL, Yusoff NR, et al
Genetic diversity and phylogeographic patterns of the peacock jewel-damselfly, Rhinocypha fenestrella (Rambur, 1842).
PLoS One. 2024;19:e0301392.
PubMed Abstract available

JENSEN TBN, Dall SM, Knutsson S, Karst SM, et al
High-throughput DNA extraction and cost-effective miniaturized metagenome and amplicon library preparation of soil samples for DNA sequencing.
PLoS One. 2024;19:e0301446.
PubMed Abstract available

MASSA AN, Sobolev VS, Faustinelli PC, Tallury SP, et al
Genetic diversity, disease resistance, and environmental adaptation of Arachis duranensis L.: New insights from landscape genomics.
PLoS One. 2024;19:e0299992.
PubMed Abstract available

OCHOA-ARISTIZABAL AM, Marquez EJ
Genetic insights into Cyphocharax magdalenae (Characiformes: Curimatidae): Microsatellite loci development and population analysis in the Cauca River, Colombia.
PLoS One. 2024;19:e0302273.
PubMed Abstract available

MAGUVU TE, Frias RJ, Hernandez-Rosas AI, Holtz BA, et al
Phylogenomic analyses and comparative genomics of Pseudomonas syringae associated with almond (Prunus dulcis) in California.
PLoS One. 2024;19:e0297867.
PubMed Abstract available

OLORUNLEKE SO, Kirchner M, Duggett N, Stevens K, et al
Rapid detection and molecular epidemiology of beta-lactamase producing Enterobacteriaceae isolated from food animals and in-contact humans in Nigeria.
PLoS One. 2024;19:e0289190.
PubMed Abstract available

PASTROVIC F, Novak R, Grgurevic I, Hrkac S, et al
Serum proteomic profiling of patients with compensated advanced chronic liver disease with and without clinically significant portal hypertension.
PLoS One. 2024;19:e0301416.
PubMed Abstract available

PURIFICACION M, Shah RBM, De Meeus T, Bakar SB, et al
Development and characterization of microsatellite markers for population genetics of the cocoa pod borer Conopomorpha cramerella (Snellen) (Lepidoptera: Gracillaridae).
PLoS One. 2024;19:e0297662.
PubMed Abstract available

SANTOS CAD, Eler JP, Oliveira ECM, Espigolan R, et al
Selective signatures in composite MONTANA TROPICAL beef cattle reveal potential genomic regions for tropical adaptation.
PLoS One. 2024;19:e0301937.
PubMed Abstract available

KUZNETSOVA KG, Vasicek J, Skiadopoulou D, Molnes J, et al
Bioinformatics pipeline for the systematic mining genomic and proteomic variation linked to rare diseases: The example of monogenic diabetes.
PLoS One. 2024;19:e0300350.
PubMed Abstract available

GARCIA-CASTRO KL, Marquez EJ
Temporal analysis of genetic diversity and gene flow in the threatened catfish Pseudoplatystoma magdaleniatum from a dammed neotropical river.
PLoS One. 2024;19:e0301577.
PubMed Abstract available

ROSCHKE NN, Hillebrandt KH, Polenz D, Klein O, et al
Optimizing environmental enrichment for Sprague Dawley rats: Exemplary insights into the liver proteome.
PLoS One. 2024;19:e0297497.
PubMed Abstract available

PARK J, Fagerquist CK
Exploring the fragmentation efficiency of proteins analyzed by MALDI-TOF-TOF tandem mass spectrometry using computational and statistical analyses.
PLoS One. 2024;19:e0299287.
PubMed Abstract available

SHEN X, Zhu X, Liu H, Yuan R, et al
Leveraging genomic signatures of oral microbiome-associated antibiotic resistance genes for diagnosing pancreatic cancer.
PLoS One. 2024;19:e0302361.
PubMed Abstract available

LUMI R, Petri S, Siwy J, Latosinska A, et al
Small peptide CSF fingerprint of amyotrophic lateral sclerosis.
PLoS One. 2024;19:e0302280.
PubMed Abstract available

KIMEMIA BB, Musila L, Langat S, Odoyo E, et al
Detection of pathogenic bacteria in ticks from Isiolo and Kwale counties of Kenya using metagenomics.
PLoS One. 2024;19:e0296597.
PubMed Abstract available

HERNANDEZ AM, Alcaraz LD, Hernandez-Alvarez C, Romero MF, et al
Revealing the microbiome diversity and biocontrol potential of field Aedes ssp.: Implications for disease vector management.
PLoS One. 2024;19:e0302328.
PubMed Abstract available

RAHMAN MS, Shimul MEK, Parvez MAK
Comprehensive analysis of genomic variation, pan-genome and biosynthetic potential of Corynebacterium glutamicum strains.
PLoS One. 2024;19:e0299588.
PubMed Abstract available

MAO Y, Li X, Ren R, Yuan Y, et al
Identification of hub glutamine metabolism-associated genes and immune characteristics in pre-eclampsia.
PLoS One. 2024;19:e0303471.
PubMed Abstract available

MARTIN-ROY R, Thyrring J, Mata X, Bangsgaard P, et al
Advancing responsible genomic analyses of ancient mollusc shells.
PLoS One. 2024;19:e0302646.
PubMed Abstract available

YAHARA H, Yanamoto S, Takahashi M, Hamada Y, et al
Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis.
PLoS One. 2024;19:e0302569.
PubMed Abstract available

PLYLER ZE, McAtee CW, Hill AE, Crowley MR, et al
Relationships between genomic dissipation and de novo SNP evolution.
PLoS One. 2024;19:e0303257.
PubMed Abstract available

ZOLLINGER DR, Rivers E, Fine A, Huang Y, et al
Analytical validation of a novel comprehensive genomic profiling informed circulating tumor DNA monitoring assay for solid tumors.
PLoS One. 2024;19:e0302129.
PubMed Abstract available

KOHLE S, Petersen TN, Vigre H, Johansson MHK, et al
Metagenomic analysis of sewage for surveillance of bacterial pathogens: A release experiment to determine sensitivity.
PLoS One. 2024;19:e0300733.
PubMed Abstract available

ABED S, Sholeh M, Khazani Asforooshani M, Shafiei M, et al
Insights into the novel Enterococcus faecalis phage: A comprehensive genome analysis.
PLoS One. 2024;19:e0301292.
PubMed Abstract available

MUTITHU DW, Aremu OO, Mokaila D, Bana T, et al
A study protocol to characterise pathophysiological and molecular markers of rheumatic heart disease and degenerative aortic stenosis using multiparametric cardiovascular imaging and multiomics techniques.
PLoS One. 2024;19:e0303496.
PubMed Abstract available

JAHJA E, Papajorgji P, Moskowitz H, Margioukla I, et al
Measuring the perceived wellbeing of hemodialysis patients: A Mind Genomics cartography.
PLoS One. 2024;19:e0302526.
PubMed Abstract available

KIJEWSKI ACR, Witso IL, Sundaram AYM, Brynildsrud OB, et al
Transcriptomic and proteomic analysis of the virulence inducing effect of ciprofloxacin on enterohemorrhagic Escherichia coli.
PLoS One. 2024;19:e0298746.
PubMed Abstract available

TETTEY R, Egyir B, Tettey P, Arko-Mensah J, et al
Genomic analysis of multidrug-resistant Escherichia coli from Urban Environmental water sources in Accra, Ghana, Provides Insights into public health implications.
PLoS One. 2024;19:e0301531.
PubMed Abstract available

MULLER IA, Thorn F, Rajan S, Ericson PGP, et al
Species-specific dynamics may cause deviations from general biogeographical predictions - evidence from a population genomics study of a New Guinean endemic passerine bird family (Melampittidae).
PLoS One. 2024;19:e0293715.
PubMed Abstract available

MORADIMOTLAGH A, Brar HK, Chen S, Moon KM, et al
Characterization of Argonaute-containing protein complexes in Leishmania-infected human macrophages.
PLoS One. 2024;19:e0303686.
PubMed Abstract available

THUREBORN O, Wikstrom N, Razafimandimbison SG, Rydin C, et al
Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae.
PLoS One. 2024;19:e0302365.
PubMed Abstract available

AVELINO TM, Provencio MG, Peroni LA, Domingues RR, et al
Improving obesity research: Unveiling metabolic pathways through a 3D In vitro model of adipocytes using 3T3-L1 cells.
PLoS One. 2024;19:e0303612.
PubMed Abstract available

TUNBENJASIRI K, Pongking T, Sitthirach C, Kongsintaweesuk S, et al
Metagenomics and metaproteomics alterations are associated with kidney disease in opisthorchiasis hamsters fed a high-fat and high-fructose diet.
PLoS One. 2024;19:e0301907.
PubMed Abstract available

MICHELS BA, Beekman MM, Field J, Gruber J, et al
Genetic differentiation at extreme latitudes in the socially plastic sweat bee Halictus rubicundus.
PLoS One. 2024;19:e0302688.
PubMed Abstract available

CHO JA, Jeon S, Kwon Y, Roh YJ, et al
Comparative proteomics analysis of biofilms and planktonic cells of Enterococcus faecalis and Staphylococcus lugdunensis with contrasting biofilm-forming ability.
PLoS One. 2024;19:e0298283.
PubMed Abstract available

CHOW AK, Low R, Yuan J, Yee KK, et al
Bioinformatics for Dentistry: A secondary database for the genetics of tooth development.
PLoS One. 2024;19:e0303628.
PubMed Abstract available

ZAVADSKA D, Henry N, Auladell A, Berney C, et al
Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes.
PLoS One. 2024;19:e0303697.
PubMed Abstract available

CATANO TENORIO I, Joya CD, Marquez EJ
Spatial population genetic structure of Caquetaia kraussii (Steindachner, 1878) evidenced by species-specific microsatellite loci in the middle and low basin of the Cauca River, Colombia.
PLoS One. 2024;19:e0304799.
PubMed Abstract available

MISRA S, Kawamura Y, Singh P, Sengupta S, et al
Prognostic biomarkers of intracerebral hemorrhage identified using targeted proteomics and machine learning algorithms.
PLoS One. 2024;19:e0296616.
PubMed Abstract available

LEWIS PA, Silajdzic E, Smith H, Bates N, et al
A secreted proteomic footprint for stem cell pluripotency.
PLoS One. 2024;19:e0299365.
PubMed Abstract available

LUO Y, Zhang Z, Xi S, Li T, et al
Bioinformatics analyses and experimental validation of ferroptosis-related genes in bronchopulmonary dysplasia pathogenesis.
PLoS One. 2024;19:e0291583.
PubMed Abstract available

WOLNICKI J, Kaczmarczyk D, Sikorska J, Kaminski R, et al
Genetic variability of the endangered fish lake minnow (Eupallasella percnurus) in populations newly established by translocation and those existing long term in Poland.
PLoS One. 2024;19:e0304274.
PubMed Abstract available

SAWAMURA J, Morishita S, Ishigooka J
Several supplementary concepts for applied category-theoretical states over an extended Petri net using an example relating to genetic coding: Toward an abstract algebraic formulation of molecular/genetic biology.
PLoS One. 2024;19:e0302710.
PubMed Abstract available

CHEN H, Yu S, Zhang X, Gao Y, et al
Comparative proteomics reveals that fatty acid metabolism is involved in myocardial adaptation to chronic hypoxic injury.
PLoS One. 2024;19:e0305571.
PubMed Abstract available

DOLFO V, Boissin E, Lapinski M, Planes S, et al
New insights into population structure, demographic history, and effective population size of the critically endangered blue shark Prionace glauca in the Mediterranean Sea.
PLoS One. 2024;19:e0305608.
PubMed Abstract available

THAO DH, Dinh TH, Mitsunaga S, Duy D, et al
Investigating demic versus cultural diffusion and sex bias in the spread of Austronesian languages in Vietnam.
PLoS One. 2024;19:e0304964.
PubMed Abstract available

HOU HX, Pang L, Zhao L, Xing J, et al
Ferroptosis-related gene MAPK3 is associated with the neurological outcome after cardiac arrest.
PLoS One. 2024;19:e0301647.
PubMed Abstract available

ARYA R, Shakya H, Chaurasia R, Kumar S, et al
Computational reassessment of RNA-seq data reveals key genes in active tuberculosis.
PLoS One. 2024;19:e0305582.
PubMed Abstract available

WIMALARATHNA NA, Wickramasuriya AM, Metschina D, Cauz-Santos LA, et al
Genetic diversity and population structure of Piper nigrum (black pepper) accessions based on next-generation SNP markers.
PLoS One. 2024;19:e0305990.
PubMed Abstract available

KERDKUMTHONG K, Nanarong S, Roytrakul S, Pitakpornpreecha T, et al
Quantitative proteomics analysis reveals possible anticancer mechanisms of 5'-deoxy-5'-methylthioadenosine in cholangiocarcinoma cells.
PLoS One. 2024;19:e0306060.
PubMed Abstract available

ZEWODU A, Mohammed W, Shiferaw E
Analysis of genetic diversity and population structure of some Ethiopian barley (Hordeum vulgare L.) accessions using SSR markers.
PLoS One. 2024;19:e0305945.
PubMed Abstract available

YUAN C, Li Z, Zhou K, Pan X, et al
Genetic diversity and population structure of Bellamya purificata in Guangxi.
PLoS One. 2024;19:e0305197.
PubMed Abstract available

ALLAIRE P, Elsayed NS, Berg RL, Rose W, et al
Phenome-wide association study identifies new clinical phenotypes associated with Staphylococcus aureus infections.
PLoS One. 2024;19:e0303395.
PubMed Abstract available

SAYYAD L, Harrington C, Castro CJ, Belgasmi-Allen H, et al
Molecular epidemiology of enteroviruses from Guatemalan wastewater isolated from human lung fibroblasts.
PLoS One. 2024;19:e0305108.
PubMed Abstract available

WANG Y, Bi S, Li X, Zhong Y, et al
Perturbations in gut microbiota composition in schizophrenia.
PLoS One. 2024;19:e0306582.
PubMed Abstract available

BHATTACHARJEE A, Hosen MR, Lamisa AB, Ahammad I, et al
An integrated comparative genomics, subtractive proteomics and immunoinformatics framework for the rational design of a Pan-Salmonella multi-epitope vaccine.
PLoS One. 2024;19:e0292413.
PubMed Abstract available

WANG H, Liu Y, Xu S, Wang T, et al
Proteomics analysis of deep fascia in acute compartment syndrome.
PLoS One. 2024;19:e0305275.
PubMed Abstract available

HOONDEE P, Phuengjayaem S, Kingkaew E, Rojsitthisak P, et al
Comparative genomic analysis and optimization of astaxanthin production of Rhodotorula paludigena TL35-5 and Rhodotorula sampaioana PL61-2.
PLoS One. 2024;19:e0304699.
PubMed Abstract available

ZHENG L, Wang Z, Guo J, Guan J, et al
Comparative genomics of Tn6411 transposons carrying the blaIMP-1 gene in Pseudomonas aeruginosa.
PLoS One. 2024;19:e0306442.
PubMed Abstract available

JENKINS V, Habibi R, Hall V, Leonard P, et al
Roll-out of an educational workshop to improve knowledge and self-confidence of healthcare professionals engaged in mainstreaming of breast cancer genetics.
PLoS One. 2024;19:e0307301.
PubMed Abstract available

HONG JS, Tindall JM, Tindall SR, Sorscher EJ, et al
Mutation accumulation in H. sapiens F508del CFTR countermands dN/dS type genomic analysis.
PLoS One. 2024;19:e0305832.
PubMed Abstract available

RAVELO AD, Ferm P, Guo Y, Omontese BO, et al
Using a multi-omics approach to explore potential associations with rumen content and serum of cows with different milk production levels based on genomic predicted transmitting ability for milk and phenotypic milk production.
PLoS One. 2024;19:e0305674.
PubMed Abstract available

LIN G, Huang Z, Yue T, Chai J, et al
Puzzle Hi-C: An accurate scaffolding software.
PLoS One. 2024;19:e0298564.
PubMed Abstract available

CHEKESA B, Singh H, Gonzalez-Juarbe N, Vashee S, et al
Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia.
PLoS One. 2024;19:e0304060.
PubMed Abstract available

LEKUYA HM, Kateete DP, Olweny G, Kigozi E, et al
Metagenomic sequencing of the skin microbiota of the scalp predicting the risk of surgical site infections following surgery of traumatic brain injury in sub-Saharan Africa.
PLoS One. 2024;19:e0303483.
PubMed Abstract available

CORNEJO-CORONA I, Boland DJ, Devarenne TP
Method for isolation of high molecular weight genomic DNA from Botryococcus biomass.
PLoS One. 2024;19:e0301680.
PubMed Abstract available

LUO G, Gao Y, Zheng Z, Gao B, et al
Exploring the role of ferroptosis-related genes as biomarkers in acute kidney injury.
PLoS One. 2024;19:e0307472.
PubMed Abstract available

BAENA-MIRET S, Reverter F, Vegas E
A framework for block-wise missing data in multi-omics.
PLoS One. 2024;19:e0307482.
PubMed Abstract available

STEINBACH S, Molina M, Grinberg LT, Aring L, et al
Don't die like me: Which proteins are responsible for the selective neuronal vulnerability within the substantia nigra?
PLoS One. 2024;19:e0296730.
PubMed Abstract available

AKBARI ROKN ABADI S, Mohammadi A, Koohi S
PC-mer: An Ultra-fast memory-efficient tool for metagenomics profiling and classification.
PLoS One. 2024;19:e0307279.
PubMed Abstract available

KOUHMAREH K, Martin E, Finlay D, Bhadada A, et al
Capture of circulating metastatic cancer cell clusters from lung cancer patients can reveal unique genomic profiles and potential anti-metastatic molecular targets: A proof-of-concept study.
PLoS One. 2024;19:e0306450.
PubMed Abstract available

BOLAND DJ, Cornejo-Corona I, Browne DR, Murphy RL, et al
Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis.
PLoS One. 2024;19:e0304144.
PubMed Abstract available

AHUATZIN-HERNANDEZ JM, Morrone JJ, Vidal-Martinez VM
Biotic assemblages of gelatinous zooplankton in the Gulf of Mexico and adjacent waters: An evolutionary biogeographic approach.
PLoS One. 2024;19:e0307933.
PubMed Abstract available

MIRA-JOVER A, Gracia E, Gimenez A, Fritz U, et al
Taking advantage of reference-guided assembly in a slowly-evolving lineage: Application to Testudo graeca.
PLoS One. 2024;19:e0303408.
PubMed Abstract available

MATIC I, Velickovic N, Radisic D, Milinski L, et al
Genetic diversity of a recovering European roller (Coracias garrulus) population from Serbia.
PLoS One. 2024;19:e0308066.
PubMed Abstract available

ROJAS-VARGAS J, Rebollar EA, Sanchez-Flores A, Pardo-Lopez L, et al
A comparative genomic study of a hydrocarbon-degrading marine bacterial consortium.
PLoS One. 2024;19:e0303363.
PubMed Abstract available

LEE YM, Choi KM, Mun SH, Yoo JW, et al
Gut microbiota composition of the isopod Ligia in South Korea exposed to expanded polystyrene pollution.
PLoS One. 2024;19:e0308246.
PubMed Abstract available

LI S, Zhang Y, Tong P, Yang W, et al
Diagnosis with Metagenomic Next-Generation Sequencing (mNGS) technology and real-time PCR for SARS-CoV-2 Omicron detection using various nasopharyngeal swabs in SARS-CoV-2 Omicron.
PLoS One. 2024;19:e0305289.
PubMed Abstract available

MONTELEONE MC, Billi SC, Abarzua-Catalan L, Henzi R, et al
Bulk serum extracellular vesicles from stressed mice show a distinct proteome and induce behavioral and molecular changes in naive mice.
PLoS One. 2024;19:e0308976.
PubMed Abstract available

S A, Das A, Kalita PJ, Patil RI, et al
Improved methods for total and chloroplast protein extraction from Cajanus species for two-dimensional gel electrophoresis and mass spectrometry.
PLoS One. 2024;19:e0308909.
PubMed Abstract available

NIETO-BLAZQUEZ ME, Gomez-Suarez M, Pfenninger M, Koch K, et al
Impact of feralization on evolutionary trajectories in the genomes of feral cat island populations.
PLoS One. 2024;19:e0308724.
PubMed Abstract available

RENTSCH JD, Blanco SR, Leebens-Mack JH
Comparative transcriptomics of Venus flytrap (Dionaea muscipula) across stages of prey capture and digestion.
PLoS One. 2024;19:e0305117.
PubMed Abstract available

BARTHOLOME J, Ospina JO, Sandoval M, Espinosa N, et al
Genomic selection for tolerance to aluminum toxicity in a synthetic population of upland rice.
PLoS One. 2024;19:e0307009.
PubMed Abstract available

KATSUMI T, Sato H, Murakami R, Hanatani T, et al
Identification of microbial antigens in liver tissues involved in the pathogenesis of primary biliary cholangitis using 16S rRNA metagenome analysis.
PLoS One. 2024;19:e0308912.
PubMed Abstract available

SUN X, Jia Q, Li K, Tian C, et al
Comparative genomic landscape of lower-grade glioma and glioblastoma.
PLoS One. 2024;19:e0309536.
PubMed Abstract available

CHENG C, Wu F, Xu Y, Ren C, et al
Proteome analysis provides insights into sex differences in Holothuria Scabra.
PLoS One. 2024;19:e0301884.
PubMed Abstract available

KELLY CM, McLaughlin RL
Comparison of machine learning methods for genomic prediction of selected Arabidopsis thaliana traits.
PLoS One. 2024;19:e0308962.
PubMed Abstract available

KOUAKOU JL, Gonedele-Bi S
Population genetic structure and historical demography of the population of forest elephants in Cote d'Ivoire.
PLoS One. 2024;19:e0300468.
PubMed Abstract available

SMITH AM, Ramudzulu M, Munk P, Avot BJP, et al
Metagenomics analysis of sewage for surveillance of antimicrobial resistance in South Africa.
PLoS One. 2024;19:e0309409.
PubMed Abstract available

PAN H, Deng L, Zhu K, Shi D, et al
Evaluation of genetic diversity and population structure of Annamocarya sinensis using SCoT markers.
PLoS One. 2024;19:e0309283.
PubMed Abstract available

OGUNDIPE O, Kurt Z, Woo WL
Deep neural networks integrating genomics and histopathological images for predicting stages and survival time-to-event in colon cancer.
PLoS One. 2024;19:e0305268.
PubMed Abstract available

ZHANG K, Cao Y, Guo X, Kong F, et al
Comparative transcriptome analysis of differentially expressed genes and pathways in male and female flowers of Fraxinus mandshurica.
PLoS One. 2024;19:e0308013.
PubMed Abstract available

HEZI H, Shats D, Gurevich D, Maruvka YE, et al
Exploring the interplay between colorectal cancer subtypes genomic variants and cellular morphology: A deep-learning approach.
PLoS One. 2024;19:e0309380.
PubMed Abstract available

PUSA T, Rousu J
Stable biomarker discovery in multi-omics data via canonical correlation analysis.
PLoS One. 2024;19:e0309921.
PubMed Abstract available

AYOUB NM, Sardiah S, Al-Share QY, Alkader MS, et al
Exploring angiogenic pathways in breast cancer: Clinicopathologic correlations and prognostic implications based on gene expression profiles from a large-scale genomic dataset.
PLoS One. 2024;19:e0310557.
PubMed Abstract available

LAMPERT KP, Heermann L, Storm S, Hirsch PE, et al
Round gobies (Neogobius melanostomus) in the River Rhine: Population genetic support for invasion via two different routes.
PLoS One. 2024;19:e0310692.
PubMed Abstract available

SHARMA R, Yadav K, Monga L, Gupta V, et al
Identification of pivotal genes and pathways in Chorea-acanthocytosis using comprehensive bioinformatic analysis.
PLoS One. 2024;19:e0309594.
PubMed Abstract available

CONDORELLI C, Nicitra E, Musso N, Bongiorno D, et al
Prediction of antimicrobial resistance of Klebsiella pneumoniae from genomic data through machine learning.
PLoS One. 2024;19:e0309333.
PubMed Abstract available

HANNA R, Graur A, Sinclair P, Mckiver BD, et al
Proteomic analysis of dorsal root ganglia in a mouse model of paclitaxel-induced neuropathic pain.
PLoS One. 2024;19:e0306498.
PubMed Abstract available

BORGES KCM, Costa VAF, Neves B Junior, Kipnis A, et al
New antibacterial candidates against Acinetobacter baumannii discovered by in silico-driven chemogenomics repurposing.
PLoS One. 2024;19:e0307913.
PubMed Abstract available

AUMAILLEY L, Lebel M
Sex and organ specific proteomic responses to vitamin C deficiency in the brain, heart, liver, and spleen of Gulo-/- mice.
PLoS One. 2024;19:e0311857.
PubMed Abstract available

ATEMNKENG NTAM V, Huebner T, Steffens M, Roethlein C, et al
The influence of age, gender and pharmacogenetic profiles on the perspective on medicines in the German EMPAR study.
PLoS One. 2024;19:e0311267.
PubMed Abstract available

YU D, Tao L, Song L, Lai K, et al
Integrated multi-omics approach revealed TTNtv c.13254T>G causing dilated cardiomyopathy in mice.
PLoS One. 2024;19:e0311670.
PubMed Abstract available

BASU MALLICK S, Das S, Venkatasubramanian A, Kundu S, et al
Comprehensive in silico analyses of fifty-one uncharacterized proteins from Vibrio cholerae.
PLoS One. 2024;19:e0311301.
PubMed Abstract available

CASTILLO-RODRIGUEZ N, Saldarriaga-Gomez AM, Antelo R, Vargas-Ramirez M, et al
First genetic evaluation of a wild population of Crocodylus intermedius: New insights for the recovery of a Critically Endangered species.
PLoS One. 2024;19:e0311412.
PubMed Abstract available

HUDSON O, Meinecke CD, Brawner JT
Comparative genomics of Fusarium species causing Fusarium ear rot of maize.
PLoS One. 2024;19:e0306144.
PubMed Abstract available

SONG C, Liu F, Mei Y, Cai W, et al
Integrated metagenomic and metabonomic mechanisms for the therapeutic effects of Duhuo Jisheng decoction on intervertebral disc degeneration.
PLoS One. 2024;19:e0310014.
PubMed Abstract available

KOKESH KJ, Bala N, Dogan YE, Nguyen VL, et al
Mycobacterium avium inhibits protein kinase C and MARCKS phosphorylation in human cystic fibrosis and non-cystic fibrosis cells.
PLoS One. 2024;19:e0308299.
PubMed Abstract available

MORADI N, Joger U, Shafiei Bafti S, Sharifi A, et al
Biogeography of the Iranian snakes.
PLoS One. 2024;19:e0309120.
PubMed Abstract available

THOMPSON R, Pickard BS
The amino acid composition of a protein influences its expression.
PLoS One. 2024;19:e0284234.
PubMed Abstract available

FOO B, Amedei H, Kaur S, Jaawan S, et al
Unbiased complexome profiling and global proteomics analysis reveals mitochondrial impairment and potential changes at the intercalated disk in presymptomatic R14Delta/+ mice hearts.
PLoS One. 2024;19:e0311203.
PubMed Abstract available

TAN M, Liu X, Zhang Y, Yin Y, et al
Molecular epidemiological characteristics, variant spectrum and genotype-phenotype correlation of glucose-6-phosphate dehydrogenase deficiency in China: A population-based multicenter study using newborn screening.
PLoS One. 2024;19:e0310517.
PubMed Abstract available

STANWORTH M, Zhang SD
Elucidating the roles of SOD3 correlated genes and reactive oxygen species in rare human diseases using a bioinformatic-ontology approach.
PLoS One. 2024;19:e0313139.
PubMed Abstract available

LIU S, Ren J, Li J, Yu D, et al
Characterizing the gut microbiome of diarrheal mink under farmed conditions: A metagenomic analysis.
PLoS One. 2024;19:e0312821.
PubMed Abstract available

AKCELIK-DEVECI S, Kilic E, Mansur-Ozen N, Timucin E, et al
Identification of interaction partners of outer inflammatory protein A: Computational and experimental insights into how Helicobacter pylori infects host cells.
PLoS One. 2024;19:e0300557.
PubMed Abstract available

ZHANG WT, Ge HW, Wei Y, Gao JL, et al
Molecular characterization of PANoptosis-related genes in chronic kidney disease.
PLoS One. 2024;19:e0312696.
PubMed Abstract available

DI LUCA A, Bennato F, Ianni A, Martino C, et al
Label-free liquid chromatography mass spectrometry analysis of changes in broiler liver proteins under transport stress.
PLoS One. 2024;19:e0311539.
PubMed Abstract available

GAGNON L, Moreau C, Laprise C, Girard SL, et al
Fine-scale genetic structure and rare variant frequencies.
PLoS One. 2024;19:e0313133.
PubMed Abstract available

VITALE P, Laido G, Dono G, Pecorella I, et al
Univariate and multivariate genomic prediction for agronomic traits in durum wheat under two field conditions.
PLoS One. 2024;19:e0310886.
PubMed Abstract available

ZHANG X, Zhou X, Tu Z, Qiang L, et al
Proteomic and ubiquitinome analysis reveal that microgravity affects glucose metabolism of mouse hearts by remodeling non-degradative ubiquitination.
PLoS One. 2024;19:e0313519.
PubMed Abstract available

XU Z, Foster JB, Lashley R, Wang X, et al
Comparison of the protein composition of isolated extracellular vesicles from mouse brain and dissociated brain cell culture medium.
PLoS One. 2024;19:e0309716.
PubMed Abstract available

CHUTOE C, Inson I, Krobthong S, Phueakphud N, et al
Combinatorial effects of cannabinoid receptor 1 and 2 agonists on characteristics and proteomic alteration in MDA-MB-231 breast cancer cells.
PLoS One. 2024;19:e0312851.
PubMed Abstract available

BHATTARAI G, Rhein HS, Sreedasyam A, Lovell JT, et al
Transcriptome analysis under pecan scab infection reveals the molecular mechanisms of the defense response in pecans.
PLoS One. 2024;19:e0313878.
PubMed Abstract available

HAQUE MA, Kim NK, Yeji R, Lee B, et al
Genomic prediction and genome-wide association studies of morphological traits and distraction index in Korean Sapsaree dogs.
PLoS One. 2024;19:e0312583.
PubMed Abstract available

DRAPAL M, Ovalle Rivera TM, Becerra Lopez-Lavalle LA, Fraser PD, et al
Carotenoid composition and sequestration in cassava (Manihot esculentum Crantz) roots.
PLoS One. 2024;19:e0312517.
PubMed Abstract available

DENG Y, Perry TA, Hulley P, Maciewicz RA, et al
Development of methodology to support molecular endotype discovery from synovial fluid of individuals with knee osteoarthritis: The STEpUP OA consortium.
PLoS One. 2024;19:e0309677.
PubMed Abstract available

CAI K, Luo Y, Chen H, Dong Y, et al
Integrative omics analysis identifies biomarkers of septic cardiomyopathy.
PLoS One. 2024;19:e0310412.
PubMed Abstract available

AMBU J, Dufresnes C
Genomic and bioacoustic variation in a midwife toad hybrid zone: A role for reinforcement?
PLoS One. 2024;19:e0314477.
PubMed Abstract available

MEIRING C, Labuschagne M
Genomic assessment of targets implicated in Rhipicephalus microplus acaricide resistance.
PLoS One. 2024;19:e0312074.
PubMed Abstract available

MAGRI S, Higgins OA, Lugli F, Silvestrini S, et al
Enamel histomorphometry, growth patterns and developmental trajectories of the first deciduous molar in an Italian early medieval skeletal series.
PLoS One. 2024;19:e0304051.
PubMed Abstract available

SUGAHARA S, Unuma K, Wen S, Funakoshi T, et al
Dissociation of mitochondrial and ribosomal biogenesis during thallium administration in rat kidney.
PLoS One. 2024;19:e0311884.
PubMed Abstract available

HE D, Shannon CP, Hirota JA, Ask K, et al
Diagnostic potential of genomic blood biomarkers of pulmonary fibrosis in a prospective cohort.
PLoS One. 2024;19:e0314876.
PubMed Abstract available

SUN B, Guo J, Jin H, Jin Z, et al
MetaCONNET: A metagenomic polishing tool for long-read assemblies.
PLoS One. 2024;19:e0313515.
PubMed Abstract available

MANGOMA N, Zhou N, Ncube T
Metagenome-assembled genomes provide insight into the microbial taxonomy and ecology of the Buhera soda pans, Zimbabwe.
PLoS One. 2024;19:e0299620.
PubMed Abstract available

ZHANG Y, Lu L, Chen M, Nie J, et al
Identification and validation of ATP6V1G1-regulated phosphorylated proteins in hepatocellular carcinoma.
PLoS One. 2024;19:e0310037.
PubMed Abstract available

BALKE M, Mainda T, Neven K, Hendrich L, et al
Recent range expansion and lineage idiosyncratic population structure of Liodessus diving beetles in the high Andes (Coleoptera: Dytiscidae, Bidessini).
PLoS One. 2024;19:e0308683.
PubMed Abstract available

SHRIWASH N, Aiman A, Singh P, Basir SF, et al
Understanding the role of potential biomarkers in attenuating multiple sclerosis progression via multiomics and network-based approach.
PLoS One. 2024;19:e0314428.
PubMed Abstract available

HEWITSON L, Mathews JA, Devlin M, Schutte C, et al
Blood biomarker discovery for autism spectrum disorder: A proteomic analysis.
PLoS One. 2024;19:e0302951.
PubMed Abstract available

MOSHARAF MP, Alam K, Gow J, Mahumud RA, et al
Accumulating the key proteomic signatures associated with delirium: Evidence from systematic review.
PLoS One. 2024;19:e0309827.
PubMed Abstract available

WANG H, Han X, Niu S, Cheng H, et al
DFASGCNS: A prognostic model for ovarian cancer prediction based on dual fusion channels and stacked graph convolution.
PLoS One. 2024;19:e0315924.
PubMed Abstract available

CHENG M, Xiao S, Kayi S, Guan Y, et al
Colon mucosal proteomics of ankylosing spondylitis versus gut inflammation.
PLoS One. 2024;19:e0315324.
PubMed Abstract available

ALBERUNI S, Ray S
Integration of biological data via NMF for identification of human disease-associated gene modules through multi-label classification.
PLoS One. 2024;19:e0305503.
PubMed Abstract available

LENG D, Chimedtseren C, Wang T, Su R, et al
Proteomics analysis of body fluid exosomes of rheumatoid arthritis patients underwent oxhorn cupping therapy.
PLoS One. 2024;19:e0311526.
PubMed Abstract available

OOSTLANDER AG, Brodde L, von Bargen M, Slippers B, et al
Development of a molecular genetics and cell biology toolbox for the filamentous fungus Diplodia sapinea.
PLoS One. 2024;19:e0308794.
PubMed Abstract available

HALL M, Skinderhaug MK, Almaas E
Phenome-wide association network demonstrates close connection with individual disease trajectories from the HUNT study.
PLoS One. 2024;19:e0311485.
PubMed Abstract available

RAHMAN MM, Siddique N, Hasnat S, Rahman MT, et al
Genomic insights into the probiotic potential and genes linked to gallic acid metabolism in Pediococcus pentosaceus MBBL6 isolated from healthy cow milk.
PLoS One. 2024;19:e0316270.
PubMed Abstract available

DE VERDAL H, Segura V, Pot D, Salas N, et al
Performance of phenomic selection in rice: Effects of population size and genotype-environment interactions on predictive ability.
PLoS One. 2024;19:e0309502.
PubMed Abstract available

LOPES F, Gunter N, Gillett CPDT, Montanaro G, et al
From museum drawer to tree: Historical DNA phylogenomics clarifies the systematics of rare dung beetles (Coleoptera: Scarabaeinae) from museum collections.
PLoS One. 2024;19:e0309596.
PubMed Abstract available

CHEN S, Li N, Safiul Azam FM, Ao L, et al
Comparative transcriptome analysis of albino northern snakehead (Channa argus) reveals its various collagen-related DEGs in caudal fin cells.
PLoS One. 2024;19:e0315996.
PubMed Abstract available

BROCKE SA, Reidel B, Ehre C, Rebuli ME, et al
Profiling endogenous airway proteases and antiproteases and modeling proteolytic activation of Influenza HA using in vitro and ex vivo human airway surface liquid samples.
PLoS One. 2024;19:e0306197.
PubMed Abstract available

SEGURA D, Sharma D, Espin-Garcia O
Comparing subsampling strategies for metagenomic analysis in microbial studies using amplicon sequence variants versus operational taxonomic units.
PLoS One. 2024;19:e0315720.
PubMed Abstract available

January 2023

CHEN IS, Jang-Liaw NH
Phylogeography of Aphyocypris normalis Nichols and Pope, 1927 at Hainan Island and adjacent areas based on mitochondrial DNA data.
PLoS One. 2023;18:e0282460.
PubMed Abstract available

LUTZ I, Miranda J, Santana P, Martins T, et al
Quality analysis of genomic DNA and authentication of fisheries products based on distinct methods of DNA extraction.
PLoS One. 2023;18:e0282369.
PubMed Abstract available

MARKIANOS K, Dong F, Gorman B, Shi Y, et al
Pharmacogenetic allele variant frequencies: An analysis of the VA's Million Veteran Program (MVP) as a representation of the diversity in US population.
PLoS One. 2023;18:e0274339.
PubMed Abstract available

MENSAH GT, Ayeh-Kumi PF, Annang AK, Owusu-Frimpong I, et al
Molecular epidemiology of Cryptosporidium species in Kpong and its environs, Ghana.
PLoS One. 2023;18:e0281216.
PubMed Abstract available

LEONARD MM, Kenyon V, Valitutti F, Pennacchio-Harrington R, et al
Cohort profile: Celiac disease genomic, environmental, microbiome and metabolome study; a prospective longitudinal birth cohort study of children at-risk for celiac disease.
PLoS One. 2023;18:e0282739.
PubMed Abstract available

HUIBO Z, Yong Z, Rui L, Guorui L, et al
Analysis of the mechanism of Ricinus communis L. tolerance to Cd metal based on proteomics and metabolomics.
PLoS One. 2023;18:e0272750.
PubMed Abstract available

SARKER B, Rahaman MM, Islam MA, Alamin MH, et al
Identification of host genomic biomarkers from multiple transcriptomics datasets for diagnosis and therapies of SARS-CoV-2 infections.
PLoS One. 2023;18:e0281981.
PubMed Abstract available

PARKER G, Hunter S, Ghazi S, Hayeems RZ, et al
Decision impact studies, evidence of clinical utility for genomic assays in cancer: A scoping review.
PLoS One. 2023;18:e0280582.
PubMed Abstract available

KIM HJ, Liu Y, Thyssen GN, Naoumkina M, et al
Phenomics and transcriptomics analyses reveal deposition of suberin and lignin in the short fiber cell walls produced from a wild cotton species and two mutants.
PLoS One. 2023;18:e0282799.
PubMed Abstract available

WHITE JM, Schumaker NH, Chock RY, Watkins SM, et al
Adding pattern and process to eco-evo theory and applications.
PLoS One. 2023;18:e0282535.
PubMed Abstract available

MAO C, Zhang F, Li X, Yang T, et al
Complete chloroplast genome sequences of Myristicaceae species with the comparative chloroplast genomics and phylogenetic relationships among them.
PLoS One. 2023;18:e0281042.
PubMed Abstract available

LIN HL, Parkinson DH, Holman JC, Thompson WC, et al
Modification of the structural stability of human serum albumin in rheumatoid arthritis.
PLoS One. 2023;18:e0271008.
PubMed Abstract available

YOKOYAMA M, Peto L, Budgell EP, Jones N, et al
Microbial diversity and antimicrobial resistance in faecal samples from acute medical patients assessed through metagenomic sequencing.
PLoS One. 2023;18:e0282584.
PubMed Abstract available

LOWELL N, Suhrbier A, Tarpey C, May S, et al
Population structure and adaptive differentiation in the sea cucumber Apostichopus californicus and implications for spatial resource management.
PLoS One. 2023;18:e0280500.
PubMed Abstract available

SCHUMMER ML, Simpson J, Shirkey B, Kucia SR, et al
Population genetics and geographic origins of mallards harvested in northwestern Ohio.
PLoS One. 2023;18:e0282874.
PubMed Abstract available

SUZUKI S, Subsomwong P, Narita K, Kawai N, et al
Differential proteomic analysis and pathogenic effects of outer membrane vesicles derived from Acinetobacter baumannii under normoxia and hypoxia.
PLoS One. 2023;18:e0283109.
PubMed Abstract available

MIYOSHI T, Watanabe M
Impact of genomic literacy components on genetic testing decision-making in the general Japanese population in the 20s and 30s.
PLoS One. 2023;18:e0283432.
PubMed Abstract available

CHEN L, Liu J, He S, Cao L, et al
Genomic prediction of rice mesocotyl length indicative of directing seeding suitability using a half-sib hybrid population.
PLoS One. 2023;18:e0283989.
PubMed Abstract available

VOJGANI E, Holker AC, Mayer M, Schon CC, et al
Genomic prediction using information across years with epistatic models and dimension reduction via haplotype blocks.
PLoS One. 2023;18:e0282288.
PubMed Abstract available

NAPIT R, Manandhar P, Chaudhary A, Shrestha B, et al
Rapid genomic surveillance of SARS-CoV-2 in a dense urban community of Kathmandu Valley using sewage samples.
PLoS One. 2023;18:e0283664.
PubMed Abstract available

XAVIER RM, Shanavas Y, Britt BM, George WT, et al
Influences of race and clinical variables on psychiatric genetic research participation: Results from a schizophrenia sample.
PLoS One. 2023;18:e0284356.
PubMed Abstract available

BAI Y, He Y, Shen CZ, Li K, et al
CRISPR/Cas9-Mediated genomic knock out of tyrosine hydroxylase and yellow genes in cricket Gryllus bimaculatus.
PLoS One. 2023;18:e0284124.
PubMed Abstract available

D'SOUZA SE, Khan K, Uddin R
Proteogenomic analysis of Serratia marcescens using computational subtractive genomics approach.
PLoS One. 2023;18:e0283993.
PubMed Abstract available

CANAL GB, Barreto CAV, de Almeida FAN, Zaidan IR, et al
Single and multi-trait genomic prediction for agronomic traits in Euterpe edulis.
PLoS One. 2023;18:e0275407.
PubMed Abstract available

XU R, Rajeev S, Salvador LCM
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection.
PLoS One. 2023;18:e0284031.
PubMed Abstract available

NANDAN D, Chen E, Chang F, Moon KM, et al
Comprehensive proteomic analysis of autophagosomes derived from Leishmania-infected macrophages.
PLoS One. 2023;18:e0284026.
PubMed Abstract available

KIM HN, Hwang J, Yoon SY, Lim CS, et al
Molecular characterization of human respiratory syncytial virus in Seoul, South Korea, during 10 consecutive years, 2010-2019.
PLoS One. 2023;18:e0283873.
PubMed Abstract available

ISHIZUKA TK, Cordeiro EMG, Alves-Pereira A, de Araujo Batista CE, et al
Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management.
PLoS One. 2023;18:e0284587.
PubMed Abstract available

PASCALL DJ, Vink E, Blacow R, Bulteel N, et al
The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis.
PLoS One. 2023;18:e0284187.
PubMed Abstract available

AMEZQUITA EJ, Nasrin F, Storey KM, Yoshizawa M, et al
Genomics data analysis via spectral shape and topology.
PLoS One. 2023;18:e0284820.
PubMed Abstract available

OMAR NM, Fleury K, Beardsall B, Prasil O, et al
Genomic capacities for Reactive Oxygen Species metabolism across marine phytoplankton.
PLoS One. 2023;18:e0284580.
PubMed Abstract available

LATHAM S, Hughes E, Budgen B, Morley A, et al
Inhibition of the PCR by genomic DNA.
PLoS One. 2023;18:e0284538.
PubMed Abstract available

CANCELA F, Ramos N, Smyth DS, Etchebehere C, et al
Wastewater surveillance of SARS-CoV-2 genomic populations on a country-wide scale through targeted sequencing.
PLoS One. 2023;18:e0284483.
PubMed Abstract available

XUE X, Zhang W, Fan A
Comparative analysis of gene ontology-based semantic similarity measurements for the application of identifying essential proteins.
PLoS One. 2023;18:e0284274.
PubMed Abstract available

MASCARELLO M, Lachenaud O, Amalfi M, Smets E, et al
Genetic characterization of a group of commercial African timber species: From genomics to barcoding.
PLoS One. 2023;18:e0284732.
PubMed Abstract available

PROIETTI R, Maranho Neto GA, Kunzova S, Lo Re O, et al
Pharmacogenomic profile of a central European urban random population-Czech population.
PLoS One. 2023;18:e0284386.
PubMed Abstract available

MCKNIGHT I, Raines R, White H, Nosoudi N, et al
Mutability of druggable kinases and pro-inflammatory cytokines by their proximity to telomeres and A+T content.
PLoS One. 2023;18:e0283470.
PubMed Abstract available

SANCHEZ DE, Walker FM, Sobek CJ, Lausen C, et al
Once upon a time in Mexico: Holocene biogeography of the spotted bat (Euderma maculatum).
PLoS One. 2023;18:e0274342.
PubMed Abstract available

NAIZABEKOV S, Hyun SW, Na JG, Yoon S, et al
Comparative genomic analysis of Methylocystis sp. MJC1 as a platform strain for polyhydroxybutyrate biosynthesis.
PLoS One. 2023;18:e0284846.
PubMed Abstract available

YANG G, Chen Y, Li Q, Benitez D, et al
Dental size variation in admixed Latin Americans: Effects of age, sex and genomic ancestry.
PLoS One. 2023;18:e0285264.
PubMed Abstract available

BIGANZOLI-RANGEL AJ, Leon-Alvarado OD, Robe LJ, Meza MA, et al
Systematics and phylogeography of bats of the genus Rhynchonycteris (Chiroptera: Emballonuridae): Integrating molecular phylogenetics, ecological niche modeling and morphometric data.
PLoS One. 2023;18:e0285271.
PubMed Abstract available

BARCELO-ANTEMATE D, Fontove-Herrera F, Santos W, Merino E, et al
The effect of the genomic GC content bias of prokaryotic organisms on the secondary structures of their proteins.
PLoS One. 2023;18:e0285201.
PubMed Abstract available

DANIS D, Jacobsen JOB, Wagner AH, Groza T, et al
Phenopacket-tools: Building and validating GA4GH Phenopackets.
PLoS One. 2023;18:e0285433.
PubMed Abstract available

MATSVAY A, Klink GV, Safina KR, Nabieva E, et al
Genomic epidemiology of SARS-CoV-2 in Russia reveals recurring cross-border transmission throughout 2020.
PLoS One. 2023;18:e0285664.
PubMed Abstract available

PRICE RJ, Davik J, Fernandez Fernandez F, Bates HJ, et al
Chromosome-scale genome sequence assemblies of the 'Autumn Bliss' and 'Malling Jewel' cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data.
PLoS One. 2023;18:e0285756.
PubMed Abstract available

ZHANG J, Li K, Bu X, Cheng S, et al
Characterization of the anti-pathogenic, genomic and phenotypic properties of a Lacticaseibacillus rhamnosus VHProbi M14 isolate.
PLoS One. 2023;18:e0285480.
PubMed Abstract available

SANCHEZ-MEDRANO AG, Martinez-Martinez RE, Soria-Guerra R, Portales-Perez D, et al
A systematic review of the protein composition of whole saliva in subjects with healthy periodontium compared with chronic periodontitis.
PLoS One. 2023;18:e0286079.
PubMed Abstract available

BASHEER A, Zahoor I, Yaqub T
Genomic architecture and evolutionary relationship of BA.2.75: A Centaurus subvariant of Omicron SARS-CoV-2.
PLoS One. 2023;18:e0281159.
PubMed Abstract available

KIM S, Kim Y, Kim Y, Yoon S, et al
PCNA Ser46-Leu47 residues are crucial in preserving genomic integrity.
PLoS One. 2023;18:e0285337.
PubMed Abstract available

BAENA A, Cabarcas F, Ocampo JC, Barrera LF, et al
Large genomic deletions delineate Mycobacterium tuberculosis L4 sublineages in South American countries.
PLoS One. 2023;18:e0285417.
PubMed Abstract available

SIGDEL TK, Boada P, Kerwin M, Rashmi P, et al
Plasma proteome perturbation for CMV DNAemia in kidney transplantation.
PLoS One. 2023;18:e0285870.
PubMed Abstract available

PEARSON S, Blance R, Yan F, Hsieh YC, et al
Identification of curaxin as a potential new therapeutic for JAK2 V617F mutant patients.
PLoS One. 2023;18:e0286412.
PubMed Abstract available

NISHINO M, Fujimori M, Koyama T, Hirata M, et al
Prevalence of psychological distress, quality of life, and satisfaction among patients and family members following comprehensive genomic profiling testing: Protocol of the Quality of life for Cancer genomics and Advanced Therapeutics (Q-CAT) study.
PLoS One. 2023;18:e0283968.
PubMed Abstract available

ANLAY DZ, Riviere E, Tu PHT, Abrams S, et al
A Bayesian approach to estimate the probability of resistance to bedaquiline in the presence of a genomic variant.
PLoS One. 2023;18:e0287019.
PubMed Abstract available

ZHENG W, Guo Y, Zhang G, Bai J, et al
Peptide encoded by lncRNA BVES-AS1 promotes cell viability, migration, and invasion in colorectal cancer cells via the SRC/mTOR signaling pathway.
PLoS One. 2023;18:e0287133.
PubMed Abstract available

GROSSMANN T, Kirsch A, Grill M, Steffan B, et al
Introducing a new type of alternative laryngeal mucosa model.
PLoS One. 2023;18:e0287634.
PubMed Abstract available

HARNPICHARNCHAI P, Pumkaeo P, Siriarchawatana P, Likhitrattanapisal S, et al
AirDNA sampler: An efficient and simple device enabling high-yield, high-quality airborne environment DNA for metagenomic applications.
PLoS One. 2023;18:e0287567.
PubMed Abstract available

XIA QQ, Walker AK, Song C, Wang J, et al
Effects of heterozygous deletion of autism-related gene Cullin-3 in mice.
PLoS One. 2023;18:e0283299.
PubMed Abstract available

PUSTAM A, Jayaraman J, Ramsubhag A
Comparative genomics and virulome analysis reveal unique features associated with clinical strains of Klebsiella pneumoniae and Klebsiella quasipneumoniae from Trinidad, West Indies.
PLoS One. 2023;18:e0283583.
PubMed Abstract available

CHEN Y, Gin JW, Wang Y, de Raad M, et al
Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format.
PLoS One. 2023;18:e0288102.
PubMed Abstract available

TOMOZAWA C, Kaneko M, Sasaki M, Miyake H, et al
Clients' and genetic counselors' perceptions of empathy in Japan: A pilot study of simulated consultations of genetic counseling.
PLoS One. 2023;18:e0288881.
PubMed Abstract available

KALYANASUNDARAM S, Lefol Y, Gundersen S, Rognes T, et al
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks.
PLoS One. 2023;18:e0286330.
PubMed Abstract available

ZELELIE TZ, Eguale T, Yitayew B, Abeje D, et al
Molecular epidemiology and antimicrobial susceptibility of diarrheagenic Escherichia coli isolated from children under age five with and without diarrhea in Central Ethiopia.
PLoS One. 2023;18:e0288517.
PubMed Abstract available

CHO Y, Seo CW, Jung PE, Lim YW, et al
Global phylogeographical distribution of Gloeoporus dichrous.
PLoS One. 2023;18:e0288498.
PubMed Abstract available

ROMERO-GONZALEZ LE, Rojas-Vargas J, Muriel-Millan LF, Bustos-Martinez J, et al
Genomic and phenotypic characterization of Pseudomonas sp. GOM7, a novel marine bacterial species with antimicrobial activity against multidrug-resistant Staphylococcus aureus.
PLoS One. 2023;18:e0288504.
PubMed Abstract available

HUA QQH, Young C, Pukala TL, Martino JC, et al
Better late than never: Optimising the proteomic analysis of field-collected octopus.
PLoS One. 2023;18:e0288084.
PubMed Abstract available

KIM G, Hwang UW
The population genetic structure and phylogeographic dispersal of Nodularia breviconcha in the Korean Peninsula based on COI and 16S rRNA genes.
PLoS One. 2023;18:e0288518.
PubMed Abstract available

NANTONGO JS, Odoi JB, Agaba H, Gwali S, et al
Genetic diversity and population structure of Vernonia amygdalina Del. in Uganda based on genome wide markers.
PLoS One. 2023;18:e0283563.
PubMed Abstract available

HUYNH TQ, Tran VN, Thai VC, Nguyen HA, et al
Genomic alterations involved in fluoroquinolone resistance development in Staphylococcus aureus.
PLoS One. 2023;18:e0287973.
PubMed Abstract available

SCUDERO OB, Santiago VF, Palmisano G, Simabuco FM, et al
The respiratory syncytial virus M2-2 protein is targeted for proteasome degradation and inhibits translation and stress granules assembly.
PLoS One. 2023;18:e0289100.
PubMed Abstract available

CHUNDURU K, A R M, Poornima S, Hande H M, et al
Clinical, laboratory, and molecular epidemiology of Orientia tsutsugamushi infection from Southwestern India.
PLoS One. 2023;18:e0289126.
PubMed Abstract available

SERRANA JM, Watanabe K
Haplotype-level metabarcoding of freshwater macroinvertebrate species: A prospective tool for population genetic analysis.
PLoS One. 2023;18:e0289056.
PubMed Abstract available

CHEN C, Khanthiyong B, Charoenlappanit S, Roytrakul S, et al
Cholinergic-estrogen interaction is associated with the effect of education on attenuating cognitive sex differences in a Thai healthy population.
PLoS One. 2023;18:e0278080.
PubMed Abstract available

BILGRAV SAETHER K, Nilsson D, Thonberg H, Tham E, et al
Transposable element insertions in 1000 Swedish individuals.
PLoS One. 2023;18:e0289346.
PubMed Abstract available

HATRONGJIT R, Boueroy P, Jenjaroenpun P, Wongsurawat T, et al
Genomic characterization and virulence of Streptococcus suis serotype 4 clonal complex 94 recovered from human and swine samples.
PLoS One. 2023;18:e0288840.
PubMed Abstract available

DE OLIVEIRA DA, da Silva PHM, Novaes E, Grattapaglia D, et al
Genome-wide analysis highlights genetic admixture in exotic germplasm resources of Eucalyptus and unexpected ancestral genomic composition of interspecific hybrids.
PLoS One. 2023;18:e0289536.
PubMed Abstract available

SCHMIDT CJ, Kim DK, Pendarvis GK, Abasht B, et al
Proteomic insight into human directed selection of the domesticated chicken Gallus gallus.
PLoS One. 2023;18:e0289648.
PubMed Abstract available

ALGANMI N, Abusamra H
Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools.
PLoS One. 2023;18:e0288371.
PubMed Abstract available

HYACINTHE C, Attia J, Schutz E, Lego L, et al
Acoustic signatures in Mexican cavefish populations inhabiting different caves.
PLoS One. 2023;18:e0289574.
PubMed Abstract available

L G S L, Wickramasinghe S, P A B D A, Abbas K, et al
Indigenous cattle of Sri Lanka: Genetic and phylogeographic relationship with Zebu of Indus Valley and South Indian origin.
PLoS One. 2023;18:e0282761.
PubMed Abstract available

RATHNAYAKE RAS, Wedage WMM, Muthukumarana LS, De Silva BGDNK, et al
Genetic diversity, phylogenetic and phylogeographic analysis of Anopheles culicifacies species complex using ITS2 and COI sequences.
PLoS One. 2023;18:e0290178.
PubMed Abstract available

LASECA N, Canovas A, Valera M, Id-Lahoucine S, et al
Genomic screening of allelic and genotypic transmission ratio distortion in horse.
PLoS One. 2023;18:e0289066.
PubMed Abstract available

TAGUCHI YH, Komaki S, Sutoh Y, Ohmomo H, et al
Integrated analysis of human DNA methylation, gene expression, and genomic variation in iMETHYL database using kernel tensor decomposition-based unsupervised feature extraction.
PLoS One. 2023;18:e0289029.
PubMed Abstract available

SIM EM, Wang Q, Howard P, Kim R, et al
Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics.
PLoS One. 2023;18:e0289070.
PubMed Abstract available

LIU Y, Zhang YZ, Imoto S
Microbial Gene Ontology informed deep neural network for microbe functionality discovery in human diseases.
PLoS One. 2023;18:e0290307.
PubMed Abstract available

WANG L, Lu X, Chopp M, Li C, et al
Comparative proteomic analysis of exosomes derived from endothelial cells and Schwann cells.
PLoS One. 2023;18:e0290155.
PubMed Abstract available

ISHIBASHI R
Multidimensional scaling methods can reconstruct genomic DNA loops using Hi-C data properties.
PLoS One. 2023;18:e0289651.
PubMed Abstract available

WU X, Ji L, Shen Y, Chen L, et al
Genomic characterization of Campylobacter isolates in Huzhou, China.
PLoS One. 2023;18:e0289371.
PubMed Abstract available

PHOPHI L, Abouelkhair M, Jones R, Henton M, et al
The molecular epidemiology and antimicrobial resistance of Staphylococcus pseudintermedius canine clinical isolates submitted to a veterinary diagnostic laboratory in South Africa.
PLoS One. 2023;18:e0290645.
PubMed Abstract available

NEGRE D, Larhlimi A, Bertrand S
Reconciliation and evolution of Penicillium rubens genome-scale metabolic networks-What about specialised metabolism?
PLoS One. 2023;18:e0289757.
PubMed Abstract available

AROH O, Liles MR, Halanych KM
Genomic characterization of a novel, widely distributed Mycoplasma species "Candidatus Mycoplasma mahonii" associated with the brittlestar Gorgonocephalus chilensis.
PLoS One. 2023;18:e0290305.
PubMed Abstract available

RIVOLTA AA, Bujold AR, Wilmarth PA, Phinney BS, et al
Comparison of the broncoalveolar lavage fluid proteomics between foals and adult horses.
PLoS One. 2023;18:e0290778.
PubMed Abstract available

O'DONNELL L, Dagley LF, Curley M, Darbey A, et al
Sertoli cell-enriched proteins in mouse and human testicular interstitial fluid.
PLoS One. 2023;18:e0290846.
PubMed Abstract available

AOUN M, Orenday-Ortiz JM, Brown K, Broeckling C, et al
Quantitative proteomic analysis of super soft kernel texture in soft white spring wheat.
PLoS One. 2023;18:e0289784.
PubMed Abstract available

SCHULER BA, Bastarache L, Wang J, He J, et al
Population genetic testing and SERPINA1 sequencing identifies unidentified alpha-1 antitrypsin deficiency alleles and gene-environment interaction with hepatitis C infection.
PLoS One. 2023;18:e0286469.
PubMed Abstract available

IZQUIERDO-FIALLO K, Munoz-Villagran C, Orellana O, Sjoberg R, et al
Comparative genomics of the proteostasis network in extreme acidophiles.
PLoS One. 2023;18:e0291164.
PubMed Abstract available

MADISON JD, LaBumbard BC, Woodhams DC
Shotgun metagenomics captures more microbial diversity than targeted 16S rRNA gene sequencing for field specimens and preserved museum specimens.
PLoS One. 2023;18:e0291540.
PubMed Abstract available

METAANE S, Monteil V, Douche T, Giai Gianetto Q, et al
Loss of CorA, the primary magnesium transporter of Salmonella, is alleviated by MgtA and PhoP-dependent compensatory mechanisms.
PLoS One. 2023;18:e0291736.
PubMed Abstract available

HERNANDEZ-SALMERON JE, Irani T, Moreno-Hagelsieb G
Fast genome-based delimitation of Enterobacterales species.
PLoS One. 2023;18:e0291492.
PubMed Abstract available

ZHANG H, Ou X, Chen W, Zeng Q, et al
Comparative physicochemical, hormonal, transcriptomic and proteomic analyses provide new insights into the formation mechanism of two chemotypes of Pogostemon cablin.
PLoS One. 2023;18:e0290402.
PubMed Abstract available

PATERSON AD, Seok SC, Vieland VJ
The effect of ascertainment on penetrance estimates for rare variants: Implications for establishing pathogenicity and for genetic counselling.
PLoS One. 2023;18:e0290336.
PubMed Abstract available

OROZCO-ARIAS S, Lopez-Murillo LH, Pina JS, Valencia-Castrillon E, et al
Genomic object detection: An improved approach for transposable elements detection and classification using convolutional neural networks.
PLoS One. 2023;18:e0291925.
PubMed Abstract available

TATEO F, Bononi M, Castorina G, Colecchia SA, et al
Whole-genome resequencing-based characterization of a durum wheat landrace showing similarity to 'Senatore Cappelli'.
PLoS One. 2023;18:e0291430.
PubMed Abstract available

KANJI CR, Mbavha BT, Masimirembwa C, Thelingwani RS, et al
Analytical validation of GenoPharm a clinical genotyping open array panel of 46 pharmacogenes inclusive of variants unique to people of African ancestry.
PLoS One. 2023;18:e0292131.
PubMed Abstract available

BARTHOLOME J, Frouin J, Brottier L, Cao TV, et al
Genomic selection for salinity tolerance in japonica rice.
PLoS One. 2023;18:e0291833.
PubMed Abstract available

AN SM, Kim BY, Kang H, Lee HR, et al
The complete chloroplast genome sequences of six Hylotelephium species: Comparative genomic analysis and phylogenetic relationships.
PLoS One. 2023;18:e0292056.
PubMed Abstract available

REGMI B, Douglas MR, Wangchuk K, Zbinden ZD, et al
The Himalayan uplift and evolution of aquatic biodiversity across Asia: Snowtrout (Cyprininae: Schizothorax) as a test case.
PLoS One. 2023;18:e0289736.
PubMed Abstract available

FRIEDRICHS M, Konigs C
A web-based platform for the annotation and analysis of NAR-published databases.
PLoS One. 2023;18:e0293134.
PubMed Abstract available

KHADIRNAIKAR S, Shukla S, Prasanna SRM
Integration of pan-cancer multi-omics data for novel mixed subgroup identification using machine learning methods.
PLoS One. 2023;18:e0287176.
PubMed Abstract available

ALPEROVICH N, Scott BM, Ross D
Automation protocol for high-efficiency and high-quality genomic DNA extraction from Saccharomyces cerevisiae.
PLoS One. 2023;18:e0292401.
PubMed Abstract available

MARTINEZ-RIOS M, Martin-Torrijos L, Casabella-Herrero G, Tedesco P, et al
On the conservation of white-clawed crayfish in the Iberian Peninsula: Unraveling its genetic diversity and structure, and origin.
PLoS One. 2023;18:e0292679.
PubMed Abstract available

KHATIB TO, Amanso AM, Knippler CM, Pedro B, et al
A live-cell platform to isolate phenotypically defined subpopulations for spatial multi-omic profiling.
PLoS One. 2023;18:e0292554.
PubMed Abstract available

MARCHESINI A, Silverj A, Torre S, Rota-Stabelli O, et al
First genome-wide data from Italian European beech (Fagus sylvatica L.): Strong and ancient differentiation between Alps and Apennines.
PLoS One. 2023;18:e0288986.
PubMed Abstract available

RUENGKET P, Roytrakul S, Tongthainan D, Taruyanon K, et al
Serum proteomic profile of wild stump-tailed macaques (Macaca arctoides) infected with malaria parasites in Thailand.
PLoS One. 2023;18:e0293579.
PubMed Abstract available

COTTER DJ, Webster TH, Wilson MA
Genomic and demographic processes differentially influence genetic variation across the human X chromosome.
PLoS One. 2023;18:e0287609.
PubMed Abstract available

GU H, Li T, Beeraka NM, Zheng Y, et al
Molecular classification of human papilloma virus-negative head and neck squamous cell carcinomas: Cell cycle-based classifier and prognostic signature.
PLoS One. 2023;18:e0286414.
PubMed Abstract available

DOS ANJOS IV, Gilio TAS, Amorim AFS, de Jesus JG, et al
Reassessing the genetic variability of Tectona grandis through high-throughput genotyping: Insights on its narrow genetic base.
PLoS One. 2023;18:e0285518.
PubMed Abstract available

VENTOLERO M, Wang S, Hu H, Li X, et al
Are the predicted known bacterial strains in a sample really present? A case study.
PLoS One. 2023;18:e0291964.
PubMed Abstract available

MEJIA-PONCE PM, Ramos-Gonzalez EJ, Ramos-Garcia AA, Lara-Ramirez EE, et al
Genomic epidemiology analysis of drug-resistant Mycobacterium tuberculosis distributed in Mexico.
PLoS One. 2023;18:e0292965.
PubMed Abstract available

IIZUKA D, Sasatani M, Ishikawa A, Daino K, et al
Newly discovered genomic mutation patterns in radiation-induced small intestinal tumors of ApcMin/+ mice.
PLoS One. 2023;18:e0292643.
PubMed Abstract available

RIVERA-RODRIGUEZ DM, Mastretta-Yanes A, Wegier A, De la Cruz Larios L, et al
Genomic diversity and population structure of teosinte (Zea spp.) and its conservation implications.
PLoS One. 2023;18:e0291944.
PubMed Abstract available

CHEN Q, Li Y, Chen Q, Tian X, et al
Mitogenome of the stink bug Aelia fieberi (Hemiptera: Pentatomidae) and a comparative genomic analysis between phytophagous and predatory members of Pentatomidae.
PLoS One. 2023;18:e0292738.
PubMed Abstract available

ROSE JP, Schurman CA, King CD, Bons J, et al
Deep coverage and quantification of the bone proteome provides enhanced opportunities for new discoveries in skeletal biology and disease.
PLoS One. 2023;18:e0292268.
PubMed Abstract available

MOENS C, Filee P, Boes A, Alie C, et al
Identification of New Mycobacterium bovis antigens and development of a multiplexed serological bead-immunoassay for the diagnosis of bovine tuberculosis in cattle.
PLoS One. 2023;18:e0292590.
PubMed Abstract available

HAMMAREN R, Goldstein ST, Schlebusch CM
Eurasian back-migration into Northeast Africa was a complex and multifaceted process.
PLoS One. 2023;18:e0290423.
PubMed Abstract available

JEANMARD N, Bissanum R, Sriplung H, Charoenlappanit S, et al
Proteomic profiling of urinary extracellular vesicles differentiates breast cancer patients from healthy women.
PLoS One. 2023;18:e0291574.
PubMed Abstract available

SUN S, Wang W, Li G, Xiao M, et al
Rational therapeutic targets with biomolecular liquid-liquid phase separation regulating synergy: A pan-cancer analysis.
PLoS One. 2023;18:e0287574.
PubMed Abstract available

EKUSAI-SEBATTA D, Ocan M, Singh S, Kyaddondo D, et al
Data sharing practices in collaborative human genomic research in low- and middle-income countries: A systematic review protocol.
PLoS One. 2023;18:e0292996.
PubMed Abstract available

HAMMAD M, Ali H, Hassan N, Tawab A, et al
Food safety and biological control; genomic insights and antimicrobial potential of Bacillus velezensis FB2 against agricultural fungal pathogens.
PLoS One. 2023;18:e0291975.
PubMed Abstract available

ZHENG L, Wang H, Lin J, Zhou Y, et al
Population genomics provides insights into the genetic diversity and adaptation of the Pieris rapae in China.
PLoS One. 2023;18:e0294521.
PubMed Abstract available

VERISSIMO DCA, Camillo-Andrade AC, Santos MDM, Sprengel SL, et al
Proteomics reveals differentially regulated pathways when comparing grade 2 and 4 astrocytomas.
PLoS One. 2023;18:e0290087.
PubMed Abstract available

CHOWDHURY-PAUL S, Martinez-Ortiz IC, Pando-Robles V, Moreno S, et al
The Azotobacter vinelandii AlgU regulon during vegetative growth and encysting conditions: A proteomic approach.
PLoS One. 2023;18:e0286440.
PubMed Abstract available

LEINONEN M, Salmela L
SAKE: Strobemer-assisted k-mer extraction.
PLoS One. 2023;18:e0294415.
PubMed Abstract available

M ALBARZINJI B, Hadi S, Ismael B, Barqee A, et al
An X-STRs analysis of the Iraqi Sorani Kurds.
PLoS One. 2023;18:e0294973.
PubMed Abstract available

UCHE NJ, Okoye O, Kizor-Akaraiwe N, Chuka-Okosa C, et al
Determinants of participation in glaucoma genomic research in South East Nigeria: A cross-sectional analytical study.
PLoS One. 2023;18:e0289643.
PubMed Abstract available

RUIZ MONDRAGON KY, Klimova A, Aguirre-Planter E, Valiente-Banuet A, et al
Differences in the genomic diversity, structure, and inbreeding patterns in wild and managed populations of Agave potatorum Zucc. used in the production of Tobala mezcal in Southern Mexico.
PLoS One. 2023;18:e0294534.
PubMed Abstract available

FENSKE GJ, Pouzou JG, Pouillot R, Taylor DD, et al
The genomic and epidemiological virulence patterns of Salmonella enterica serovars in the United States.
PLoS One. 2023;18:e0294624.
PubMed Abstract available

MOREY-LEON G, Mejia-Ponce PM, Granda Pardo JC, Munoz-Mawyin K, et al
A precision overview of genomic resistance screening in Ecuadorian isolates of Mycobacterium tuberculosis using web-based bioinformatics tools.
PLoS One. 2023;18:e0294670.
PubMed Abstract available

LEE HJ, Jeon M, Seo Y, Kang I, et al
Application of Skyline software for detecting prohibited substances in doping control analysis.
PLoS One. 2023;18:e0295065.
PubMed Abstract available

LINSSEN EC, Demmers J, van Dijk CGM, van Dam R, et al
Extracellular matrix analysis of fibrosis: A step towards tissue engineering for urethral stricture disease.
PLoS One. 2023;18:e0294955.
PubMed Abstract available

ESPITIA FAJARDO M, Rivera Franco N, Braga Y, Barreto G, et al
New Y-SNPs in QM3 indigenous populations of Colombia.
PLoS One. 2023;18:e0294516.
PubMed Abstract available

HOLLENSTEINER J, Schneider D, Poehlein A, Brinkhoff T, et al
Pan-genome analysis of six Paracoccus type strain genomes reveal lifestyle traits.
PLoS One. 2023;18:e0287947.
PubMed Abstract available

KUBAT J, Paterson R, Patramanis I, Barker G, et al
Geometric morphometrics and paleoproteomics enlighten the paleodiversity of Pongo.
PLoS One. 2023;18:e0291308.
PubMed Abstract available

DORDUNOO D, Limoges J, Chiu P, Puddester R, et al
Genomics-informed nursing strategies and health equity: A scoping review protocol.
PLoS One. 2023;18:e0295914.
PubMed Abstract available

OBODO D, Outland EH, Hughey JJ
LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes.
PLoS One. 2023;18:e0292089.
PubMed Abstract available

REN Y, Ruan P, Segal M, Dobre M, et al
Evaluation of a large-scale aptamer proteomics platform among patients with kidney failure on dialysis.
PLoS One. 2023;18:e0293945.
PubMed Abstract available

XU X, Geng F, Sun W
Quantitative proteomics and metabolomics analysis reveals the response mechanism of alfalfa (Medicago sativa L.) to o-coumaric acid stress.
PLoS One. 2023;18:e0295592.
PubMed Abstract available

WANG J, Wang H, Xu J, Song Q, et al
Identification of protein signatures for lung cancer subtypes based on BPSO method.
PLoS One. 2023;18:e0294243.
PubMed Abstract available

JAITO N, Kaewsawat N, Phetlum S, Uengwetwanit T, et al
Metagenomic discovery of lipases with predicted structural similarity to Candida antarctica lipase B.
PLoS One. 2023;18:e0295397.
PubMed Abstract available

LAIGHNEACH A, Kelly JP, Desbonnet L, Holleran L, et al
Social isolation-induced transcriptomic changes in mouse hippocampus impact the synapse and show convergence with human genetic risk for neurodevelopmental phenotypes.
PLoS One. 2023;18:e0295855.
PubMed Abstract available

CASTELLOT A, Camacho J, Fernandez-Garcia MD, Tarrago D, et al
Shotgun metagenomics to investigate unknown viral etiologies of pediatric meningoencephalitis.
PLoS One. 2023;18:e0296036.
PubMed Abstract available

WEDAGE WMM, Harischandra IN, Weerasena OVDSJ, De Silva BGDNK, et al
Genetic diversity and phylogeography of Phlebotomus argentipes (Diptera: Psychodidae, Phlebotominae), using COI and ND4 mitochondrial gene sequences.
PLoS One. 2023;18:e0296286.
PubMed Abstract available

January 2021

NIAN L, Liu X, Yang Y, Zhu X, et al
Genome-wide identification, phylogenetic, and expression analysis under abiotic stress conditions of LIM gene family in Medicago sativa L.
PLoS One. 2021;16:e0252213.
PubMed Abstract available

GARCIA E, Wright D, Gatins R, Roberts MB, et al
Haplotype network branch diversity, a new metric combining genetic and topological diversity to compare the complexity of haplotype networks.
PLoS One. 2021;16:e0251878.
PubMed Abstract available

INGMAN T, Eisenmann S, Skourtanioti E, Akar M, et al
Human mobility at Tell Atchana (Alalakh), Hatay, Turkey during the 2nd millennium BC: Integration of isotopic and genomic evidence.
PLoS One. 2021;16:e0241883.
PubMed Abstract available

MASCARELLO M, Amalfi M, Asselman P, Smets E, et al
Genome skimming reveals novel plastid markers for the molecular identification of illegally logged African timber species.
PLoS One. 2021;16:e0251655.
PubMed Abstract available

SAHA A, Kent M, Hauser L, Drinan DP, et al
Hierarchical genetic structure in an evolving species complex: Insights from genome wide ddRAD data in Sebastes mentella.
PLoS One. 2021;16:e0251976.
PubMed Abstract available

SKORUPA M, Szczepanek J, Mazur J, Domagalski K, et al
Salt stress and salt shock differently affect DNA methylation in salt-responsive genes in sugar beet and its wild, halophytic ancestor.
PLoS One. 2021;16:e0251675.
PubMed Abstract available

Thank you for your interest in scientific medicine.

AMEDEO Genetics is free of charge.