: The AMEDEO Literature Guide

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Articles published in PLoS One
Retrieve available abstracts of 1769 articles:
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January 2021

BHOYAR RC, Jain A, Sehgal P, Divakar MK, et al
High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing.
PLoS One. 2021;16:e0247115.
PubMed Abstract available

January 2020

KORDY K, Gaufin T, Mwangi M, Li F, et al
Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve.
PLoS One. 2020;15:e0219633.
PubMed Abstract available

XU P, Tang G, Cui W, Chen G, et al
Transcriptional Differences in Peanut (Arachis hypogaea L.) Seeds at the Freshly Harvested, After-ripening and Newly Germinated Seed Stages: Insights into the Regulatory Networks of Seed Dormancy Release and Germination.
PLoS One. 2020;15:e0219413.
PubMed Abstract available

GRAHAM CF, Boreham DR, Manzon RG, Stott W, et al
How "simple" methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish.
PLoS One. 2020;15:e0226608.
PubMed Abstract available

NOTT MA, Driscoll HE, Takeda M, Vangala M, et al
Advanced biofilm analysis in streams receiving organic deicer runoff.
PLoS One. 2020;15:e0227567.
PubMed Abstract available

LV L, Yu K, Lu H, Zhang X, et al
Transcriptome-wide identification of novel circular RNAs in soybean in response to low-phosphorus stress.
PLoS One. 2020;15:e0227243.
PubMed Abstract available

RASMUSSEN SL, Nielsen JL, Jones OR, Berg TB, et al
Genetic structure of the European hedgehog (Erinaceus europaeus) in Denmark.
PLoS One. 2020;15:e0227205.
PubMed Abstract available

SETIAWAN AB, Teo CH, Kikuchi S, Sassa H, et al
Centromeres of Cucumis melo L. comprise Cmcent and two novel repeats, CmSat162 and CmSat189.
PLoS One. 2020;15:e0227578.
PubMed Abstract available

VEITH M, Gocmen B, Sotiropoulos K, Eleftherakos K, et al
Phylogeographic analyses point to long-term survival on the spot in micro-endemic Lycian salamanders.
PLoS One. 2020;15:e0226326.
PubMed Abstract available

MA Z, Wang L, Zhao M, Gu S, et al
iTRAQ proteomics reveals the regulatory response to Magnaporthe oryzae in durable resistant vs. susceptible rice genotypes.
PLoS One. 2020;15:e0227470.
PubMed Abstract available

ARAUCO-SHAPIRO G, Schumacher KI, Boersma D, Bouzat JL, et al
The role of demographic history and selection in shaping genetic diversity of the Galapagos penguin (Spheniscus mendiculus).
PLoS One. 2020;15:e0226439.
PubMed Abstract available

LONGCHAMPS RJ, Castellani CA, Yang SY, Newcomb CE, et al
Evaluation of mitochondrial DNA copy number estimation techniques.
PLoS One. 2020;15:e0228166.
PubMed Abstract available

HE D, Zhang J, Zhang X, He S, et al
Development of SSR markers in Paeonia based on De Novo transcriptomic assemblies.
PLoS One. 2020;15:e0227794.
PubMed Abstract available

WISCOVITCH-RUSSO R, Rivera-Perez J, Narganes-Storde YM, Garcia-Roldan E, et al
Pre-Columbian zoonotic enteric parasites: An insight into Puerto Rican indigenous culture diets and life styles.
PLoS One. 2020;15:e0227810.
PubMed Abstract available

KIM SH, Kim SW, Lim GH, Lyu JI, et al
Transcriptome analysis to identify candidate genes associated with the yellow-leaf phenotype of a Cymbidium mutant generated by gamma-irradiation.
PLoS One. 2020;15:e0228078.
PubMed Abstract available

SMIDT EC, Paez MZ, Vieira LDN, Viruel J, et al
Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae).
PLoS One. 2020;15:e0227991.
PubMed Abstract available

HERZBERG D, Strobel P, Muller H, Meneses C, et al
Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness.
PLoS One. 2020;15:e0228134.
PubMed Abstract available

CHUNG YW, Gwak HJ, Moon S, Rho M, et al
Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
PLoS One. 2020;15:e0227886.
PubMed Abstract available

DE CESARE A, Sala C, Castellani G, Astolfi A, et al
Effect of Lactobacillus acidophilus D2/CSL (CECT 4529) supplementation in drinking water on chicken crop and caeca microbiome.
PLoS One. 2020;15:e0228338.
PubMed Abstract available

AHSAN T, Urmi NJ, Sajib AA
Heterogeneity in the distribution of 159 drug-response related SNPs in world populations and their genetic relatedness.
PLoS One. 2020;15:e0228000.
PubMed Abstract available

TIAN X, Xie J, Yu J
Physiological and transcriptomic responses of Lanzhou Lily (Lilium davidii, var. unicolor) to cold stress.
PLoS One. 2020;15:e0227921.
PubMed Abstract available

CHEN SM, Lin CE, Chen HH, Cheng YF, et al
Effect of prednisolone on glyoxalase 1 in an inbred mouse model of aristolochic acid nephropathy using a proteomics method with fluorogenic derivatization-liquid chromatography-tandem mass spectrometry.
PLoS One. 2020;15:e0227838.
PubMed Abstract available

VAN HOUT D, Verschuuren TD, Bruijning-Verhagen PCJ, Bosch T, et al
Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content.
PLoS One. 2020;15:e0227604.
PubMed Abstract available

KHADIR A, Madhu D, Kavalakatt S, Cherian P, et al
PR3 levels are impaired in plasma and PBMCs from Arabs with cardiovascular diseases.
PLoS One. 2020;15:e0227606.
PubMed Abstract available

RONDINONE V, Serrecchia L, Parisi A, Fasanella A, et al
Genetic characterization of Bacillus anthracis strains circulating in Italy from 1972 to 2018.
PLoS One. 2020;15:e0227875.
PubMed Abstract available

MOHAMED A, Collins J, Jiang H, Molendijk J, et al
Concurrent lipidomics and proteomics on malignant plasma cells from multiple myeloma patients: Probing the lipid metabolome.
PLoS One. 2020;15:e0227455.
PubMed Abstract available

LV Y, He XY, Li D, Liu T, et al
Sex-specific and opposite modulatory aspects revealed by PPI network and pathway analysis of ischemic stroke in humans.
PLoS One. 2020;15:e0227481.
PubMed Abstract available

HOANG TTH, Dang DA, Pham TH, Luong MH, et al
Epidemiological and comparative genomic analysis of Bacillus anthracis isolated from northern Vietnam.
PLoS One. 2020;15:e0228116.
PubMed Abstract available

TFAILY MA, Nassar F, Sellam LS, Amir-Tidadini ZC, et al
miRNA expression in advanced Algerian breast cancer tissues.
PLoS One. 2020;15:e0227928.
PubMed Abstract available

BABA T, Momen M, Campbell MT, Walia H, et al
Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping.
PLoS One. 2020;15:e0228118.
PubMed Abstract available

RAMDASI AY, Arankalle VA
The expression patterns of immune response genes in the Peripheral Blood Mononuclear cells of pregnant women presenting with subclinical or clinical HEV infection are different and trimester-dependent: A whole transcriptome analysis.
PLoS One. 2020;15:e0228068.
PubMed Abstract available

MOLES L, Gomez M, Moroder E, Bustos G, et al
Staphylococcus epidermidis in feedings and feces of preterm neonates.
PLoS One. 2020;15:e0227823.
PubMed Abstract available

CHIUMIENTO IR, Ituarte S, Sun J, Qiu JW, et al
Hemocyanin of the caenogastropod Pomacea canaliculata exhibits evolutionary differences among gastropod clades.
PLoS One. 2020;15:e0228325.
PubMed Abstract available

DAMAZIAK K, Kieliszek M, Buclaw M
Characterization of structure and protein of vitelline membranes of precocial (ring-necked pheasant, gray partridge) and superaltricial (cockatiel parrot, domestic pigeon) birds.
PLoS One. 2020;15:e0228310.
PubMed Abstract available

MOBARK NA, Alharbi M, Alhabeeb L, AlMubarak L, et al
Clinical management and genomic profiling of pediatric low-grade gliomas in Saudi Arabia.
PLoS One. 2020;15:e0228356.
PubMed Abstract available

ROMAGNOLI CL, Pellegrino KCM, Silva NM, Brianesi UA, et al
Diversity of Mycobacteriaceae from aquatic environment at the Sao Paulo Zoological Park Foundation in Brazil.
PLoS One. 2020;15:e0227759.
PubMed Abstract available

MORRO B, Doherty MK, Balseiro P, Handeland SO, et al
Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss).
PLoS One. 2020;15:e0227003.
PubMed Abstract available

RANDHAWA GS, Soltysiak MPM, El Roz H, de Souza CPE, et al
Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study.
PLoS One. 2020;15:e0232391.
PubMed Abstract available

DEVANGA RAGUPATHI NK, Veeraraghavan B, Muthuirulandi Sethuvel DP, Anandan S, et al
First Indian report on genome-wide comparison of multidrug-resistant Escherichia coli from blood stream infections.
PLoS One. 2020;15:e0220428.
PubMed Abstract available

VAN NEER W, Alhaique F, Wouters W, Dierickx K, et al
Aquatic fauna from the Takarkori rock shelter reveals the Holocene central Saharan climate and palaeohydrography.
PLoS One. 2020;15:e0228588.
PubMed Abstract available

REYNOLDS DA, Yoo MJ, Dixson DL, Ross C, et al
Exposure to the Florida red tide dinoflagellate, Karenia brevis, and its associated brevetoxins induces ecophysiological and proteomic alterations in Porites astreoides.
PLoS One. 2020;15:e0228414.
PubMed Abstract available

KIM MH, Jeong H, Sim YM, Lee S, et al
Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications.
PLoS One. 2020;15:e0229416.
PubMed Abstract available

CASSINI CS, Taucce PPG, de Carvalho TR, Fouquet A, et al
One step beyond a broad molecular phylogenetic analysis: Species delimitation of Adenomera marmorata Steindachner, 1867 (Anura: Leptodactylidae).
PLoS One. 2020;15:e0229324.
PubMed Abstract available

CRISCUOLO NG, Angelini C
StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis.
PLoS One. 2020;15:e0229330.
PubMed Abstract available

YAO L, Yu Q, Huang M, Song Z, et al
Comparative iTRAQ proteomic profiling of sweet orange fruit on sensitive and tolerant rootstocks infected by 'Candidatus Liberibacter asiaticus'.
PLoS One. 2020;15:e0228876.
PubMed Abstract available

ZHU W, Cheng X, Ren C, Chen J, et al
Proteomic characterization and comparison of ram (Ovis aries) and buck (Capra hircus) spermatozoa proteome using a data independent acquisition mass spectometry (DIA-MS) approach.
PLoS One. 2020;15:e0228656.
PubMed Abstract available

GU L, Wang F, Lin Z, Xu T, et al
Genetic characteristics of Jiaji Duck by whole genome re-sequencing.
PLoS One. 2020;15:e0228964.
PubMed Abstract available

IBETO L, Antonopoulos A, Grassi P, Pang PC, et al
Insights into the hyperglycosylation of human chorionic gonadotropin revealed by glycomics analysis.
PLoS One. 2020;15:e0228507.
PubMed Abstract available

COOMBS GW, Baines SL, Howden BP, Swenson KM, et al
Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus.
PLoS One. 2020;15:e0228676.
PubMed Abstract available

KHRUNIN AV, Khvorykh GV, Fedorov AN, Limborska SA, et al
Genomic landscape of the signals of positive natural selection in populations of Northern Eurasia: A view from Northern Russia.
PLoS One. 2020;15:e0228778.
PubMed Abstract available

VOLC SM, Ramos CRN, Galvao HCR, Felicio PS, et al
The Brazilian TP53 mutation (R337H) and sarcomas.
PLoS One. 2020;15:e0227260.
PubMed Abstract available

HIN N, Newman M, Kaslin J, Douek AM, et al
Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2.
PLoS One. 2020;15:e0227258.
PubMed Abstract available

JHA AR, Shmalberg J, Tanprasertsuk J, Perry L, et al
Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach.
PLoS One. 2020;15:e0227289.
PubMed Abstract available

PETZOLD A, Hassanin A
A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla).
PLoS One. 2020;15:e0217956.
PubMed Abstract available

GENG W, Qi Y, Li W, McConville TH, et al
Epidemiology of Staphylococcus aureus in neonates on admission to a Chinese neonatal intensive care unit.
PLoS One. 2020;15:e0211845.
PubMed Abstract available

KIM KH, Kim JY, Lim WJ, Jeong S, et al
Genome-wide association and epistatic interactions of flowering time in soybean cultivar.
PLoS One. 2020;15:e0228114.
PubMed Abstract available

AL-WAJEEH AS, Salhimi SM, Al-Mansoub MA, Khalid IA, et al
Comparative proteomic analysis of different stages of breast cancer tissues using ultra high performance liquid chromatography tandem mass spectrometer.
PLoS One. 2020;15:e0227404.
PubMed Abstract available

TUCCI P, Portela M, Chetto CR, Gonzalez-Sapienza G, et al
Integrative proteomic and glycoproteomic profiling of Mycobacterium tuberculosis culture filtrate.
PLoS One. 2020;15:e0221837.
PubMed Abstract available

BRUMFIELD KD, Huq A, Colwell RR, Olds JL, et al
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
PLoS One. 2020;15:e0228899.
PubMed Abstract available

TUSIIME FM, Gizaw A, Gussarova G, Nemomissa S, et al
Afro-alpine flagships revisited: Parallel adaptation, intermountain admixture and shallow genetic structuring in the giant senecios (Dendrosenecio).
PLoS One. 2020;15:e0228979.
PubMed Abstract available

YE L, Liu P, Shi T, Wang A, et al
Transcriptomic analysis to elucidate the response of honeybees (Hymenoptera: Apidae) to amitraz treatment.
PLoS One. 2020;15:e0228933.
PubMed Abstract available

BELTER A, Barciszewski J, Barciszewska AM
Revealing the epigenetic effect of temozolomide on glioblastoma cell lines in therapeutic conditions.
PLoS One. 2020;15:e0229534.
PubMed Abstract available

SOLLER JM, Ausband DE, Szykman Gunther M
The curse of observer experience: Error in noninvasive genetic sampling.
PLoS One. 2020;15:e0229762.
PubMed Abstract available

RHEAD B, Shao X, Quach H, Ghai P, et al
Global expression and CpG methylation analysis of primary endothelial cells before and after TNFa stimulation reveals gene modules enriched in inflammatory and infectious diseases and associated DMRs.
PLoS One. 2020;15:e0230884.
PubMed Abstract available

HORITA T, Gaballah MH, Fukuta M, Kanno S, et al
Time course analysis of large-scale gene expression in incised muscle using correspondence analysis.
PLoS One. 2020;15:e0230737.
PubMed Abstract available

JANGID A, Fukuda S, Seki M, Horiuchi T, et al
Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice.
PLoS One. 2020;15:e0228358.
PubMed Abstract available

QUINTEIRO J, Rodriguez-Castro J, Rey-Mendez M, Gonzalez-Henriquez N, et al
Phylogeography of the insular populations of common octopus, Octopus vulgaris Cuvier, 1797, in the Atlantic Macaronesia.
PLoS One. 2020;15:e0230294.
PubMed Abstract available

NAINO JIKA AK, Le Ru B, Capdevielle-Dulac C, Chardonnet F, et al
Population genetics of the Mediterranean corn borer (Sesamia nonagrioides) differs between wild and cultivated plants.
PLoS One. 2020;15:e0230434.
PubMed Abstract available

ALBRECHT F, Hering J, Fuchs E, Illera JC, et al
Phylogeny of the Eurasian Wren Nannus troglodytes (Aves: Passeriformes: Troglodytidae) reveals deep and complex diversification patterns of Ibero-Maghrebian and Cyrenaican populations.
PLoS One. 2020;15:e0230151.
PubMed Abstract available

IVANOVA AA, Zhelezova AD, Chernov TI, Dedysh SN, et al
Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils.
PLoS One. 2020;15:e0230157.
PubMed Abstract available

HERREN GL, Habraken J, Waeyenberge L, Haegeman A, et al
Effects of synthetic fertilizer and farm compost on soil nematode community in long-term crop rotation plots: A morphological and metabarcoding approach.
PLoS One. 2020;15:e0230153.
PubMed Abstract available

SUO W, Shi X, Xu S, Li X, et al
Towards low cost, multiplex clinical genotyping: 4-fluorescent Kompetitive Allele-Specific PCR and its application on pharmacogenetics.
PLoS One. 2020;15:e0230445.
PubMed Abstract available

HIRATSUKA VY, Beans JA, Blanchard JW, Reedy J, et al
An Alaska Native community's views on genetic research, testing, and return of results: Results from a public deliberation.
PLoS One. 2020;15:e0229540.
PubMed Abstract available

TRON C, Woillard JB, Houssel-Debry P, David V, et al
Pharmacogenetic-Whole blood and intracellular pharmacokinetic-Pharmacodynamic (PG-PK2-PD) relationship of tacrolimus in liver transplant recipients.
PLoS One. 2020;15:e0230195.
PubMed Abstract available

SOUTHEY BR, Rodriguez-Zas SL, Rhodes JS, Sweedler JV, et al
Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies.
PLoS One. 2020;15:e0228562.
PubMed Abstract available

MAGALHAES BRDS, Sosa-Gomez DR, Dionisio JF, Dias FC, et al
Cytogenetic markers applied to cytotaxonomy in two soybean pests: Anticarsia gemmatalis (Hubner, 1818) and Chrysodeixis includens (Walker, 1858).
PLoS One. 2020;15:e0230244.
PubMed Abstract available

FAHSBENDER E, Charlys da-Costa A, Elise Gill D, Augusto de Padua Milagres F, et al
Plasma virome of 781 Brazilians with unexplained symptoms of arbovirus infection include a novel parvovirus and densovirus.
PLoS One. 2020;15:e0229993.
PubMed Abstract available

TIRUVAYIPATI S, Wolfgeher D, Yue M, Duan F, et al
Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles.
PLoS One. 2020;15:e0228871.
PubMed Abstract available

LO S, Fatokun C, Boukar O, Gepts P, et al
Identification of QTL for perenniality and floral scent in cowpea (Vigna unguiculata [L.] Walp.).
PLoS One. 2020;15:e0229167.
PubMed Abstract available

PUJOL-CANADELL M, Perrier JR, Cunha L, Shuryak I, et al
Cytogenetically-based biodosimetry after high doses of radiation.
PLoS One. 2020;15:e0228350.
PubMed Abstract available

SZILAGYI GT, Nawrocki AM, Eros K, Schmidt J, et al
Proteomic changes during experimental de- and remyelination in the corpus callosum.
PLoS One. 2020;15:e0230249.
PubMed Abstract available

FARIA DM, da Silva JM Jr, Pires Costa L, Rezende Paiva S, et al
Low mtDNA diversity in a highly differentiated population of spinner dolphins (Stenella longirostris) from the Fernando de Noronha Archipelago, Brazil.
PLoS One. 2020;15:e0230660.
PubMed Abstract available

LOPEZ-GARCIA G, Jerez JM, Franco L, Veredas FJ, et al
Transfer learning with convolutional neural networks for cancer survival prediction using gene-expression data.
PLoS One. 2020;15:e0230536.
PubMed Abstract available

LOZADA DN, Ward BP, Carter AH
Gains through selection for grain yield in a winter wheat breeding program.
PLoS One. 2020;15:e0221603.
PubMed Abstract available

FUKUDA S, Tacharoenmuang R, Guntapong R, Upachai S, et al
Full genome characterization of novel DS-1-like G9P[8] rotavirus strains that have emerged in Thailand.
PLoS One. 2020;15:e0231099.
PubMed Abstract available

TIMPANO EK, Scheible MKR, Meiklejohn KA
Optimization of the second internal transcribed spacer (ITS2) for characterizing land plants from soil.
PLoS One. 2020;15:e0231436.
PubMed Abstract available

RAMOS-NINO ME, Fitzpatrick DM, Eckstrom KM, Tighe S, et al
Metagenomic analysis of Aedes aegypti and Culex quinquefasciatus mosquitoes from Grenada, West Indies.
PLoS One. 2020;15:e0231047.
PubMed Abstract available

NAM B, Kim SA, Park SD, Kim HJ, et al
Regulatory effects of Lactobacillus plantarum HY7714 on skin health by improving intestinal condition.
PLoS One. 2020;15:e0231268.
PubMed Abstract available

JIANG Y, Sun Q, Fan M, Zhang X, et al
Molecular characterization of a whirlin-like protein with biomineralization-related functions from the shell of Mytilus coruscus.
PLoS One. 2020;15:e0231414.
PubMed Abstract available

TATEHANA M, Kimura R, Mochizuki K, Inada H, et al
Comprehensive histochemical profiles of histone modification in male germline cells during meiosis and spermiogenesis: Comparison of young and aged testes in mice.
PLoS One. 2020;15:e0230930.
PubMed Abstract available

HESS MK, Rowe SJ, Van Stijn TC, Henry HM, et al
A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling.
PLoS One. 2020;15:e0219882.
PubMed Abstract available

BLEKHMAN A, Goryacheva I, Schepetov D, Zakharov I, et al
Variability of the mitochondrial CO1 gene in native and invasive populations of Harmonia axyridis Pall. comparative analysis.
PLoS One. 2020;15:e0231009.
PubMed Abstract available

ROSSO A, Pitini E, D'Andrea E, Di Marco M, et al
Genomics knowledge and attitudes among European public health professionals: Results of a cross-sectional survey.
PLoS One. 2020;15:e0230749.
PubMed Abstract available

CHARMET G, Tran LG, Auzanneau J, Rincent R, et al
BWGS: A R package for genomic selection and its application to a wheat breeding programme.
PLoS One. 2020;15:e0222733.
PubMed Abstract available

GAO J, Li WB, Liu HF, Chen FB, et al
Identification of differential expression genes related to anthocyanin biosynthesis in carmine radish (Raphanus sativus L.) fleshy roots using comparative RNA-Seq method.
PLoS One. 2020;15:e0231729.
PubMed Abstract available

BALL S, Hand N, Willman F, Durrant C, et al
Genetic and demographic vulnerability of adder populations: Results of a genetic study in mainland Britain.
PLoS One. 2020;15:e0231809.
PubMed Abstract available

JOSHI B, Lyngdoh S, Singh SK, Sharma R, et al
Revisiting the Woolly wolf (Canis lupus chanco) phylogeny in Himalaya: Addressing taxonomy, spatial extent and distribution of an ancient lineage in Asia.
PLoS One. 2020;15:e0231621.
PubMed Abstract available

UJCIKOVA H, Cechova K, Jagr M, Roubalova L, et al
Proteomic analysis of protein composition of rat hippocampus exposed to morphine for 10 days; comparison with animals after 20 days of morphine withdrawal.
PLoS One. 2020;15:e0231721.
PubMed Abstract available

JEONG DW, Lee B, Heo S, Oh Y, et al
Two genes involved in clindamycin resistance of Bacillus licheniformis and Bacillus paralicheniformis identified by comparative genomic analysis.
PLoS One. 2020;15:e0231274.
PubMed Abstract available

BRUMFIELD KD, Hasan NA, Leddy MB, Cotruvo JA, et al
A comparative analysis of drinking water employing metagenomics.
PLoS One. 2020;15:e0231210.
PubMed Abstract available

KAUR K, Khatri I, Akhtar A, Subramanian S, et al
Metagenomics analysis reveals features unique to Indian distal gut microbiota.
PLoS One. 2020;15:e0231197.
PubMed Abstract available

ZACZEK-MOCZYDLOWSKA MA, Young GK, Trudgett J, Plahe C, et al
Phage cocktail containing Podoviridae and Myoviridae bacteriophages inhibits the growth of Pectobacterium spp. under in vitro and in vivo conditions.
PLoS One. 2020;15:e0230842.
PubMed Abstract available

ZYTNICKI M, Gaspin C
mmannot: How to improve small-RNA annotation?
PLoS One. 2020;15:e0231738.
PubMed Abstract available

DEL VALLE JC, Herman JA, Whittall JB
Genome skimming and microsatellite analysis reveal contrasting patterns of genetic diversity in a rare sandhill endemic (Erysimum teretifolium, Brassicaceae).
PLoS One. 2020;15:e0227523.
PubMed Abstract available

JACQUES CN, Hulbert AK, Westenskow S, Neff MM, et al
Production location of the gelling agent Phytagel has a significant impact on Arabidopsis thaliana seedling phenotypic analysis.
PLoS One. 2020;15:e0228515.
PubMed Abstract available

RUFF TM, Marston EJ, Eagle JD, Sthapit SR, et al
Genotyping by multiplexed sequencing (GMS): A customizable platform for genomic selection.
PLoS One. 2020;15:e0229207.
PubMed Abstract available

LY SN, Garavito A, De Block P, Asselman P, et al
Chloroplast genomes of Rubiaceae: Comparative genomics and molecular phylogeny in subfamily Ixoroideae.
PLoS One. 2020;15:e0232295.
PubMed Abstract available

HAM-DUENAS JG, Canales-Del-Castillo R, Voelker G, Ruvalcaba-Ortega I, et al
Adaptive genetic diversity and evidence of population genetic structure in the endangered Sierra Madre Sparrow (Xenospiza baileyi).
PLoS One. 2020;15:e0232282.
PubMed Abstract available

NORRELL AE, Jones KL, Saillant EA
Development and characterization of genomic resources for a non-model marine teleost, the red snapper (Lutjanus campechanus, Lutjanidae): Construction of a high-density linkage map, anchoring of genome contigs and comparative genomic analysis.
PLoS One. 2020;15:e0232402.
PubMed Abstract available

ANGEBAULT C, Payen M, Woerther PL, Rodriguez C, et al
Combined bacterial and fungal targeted amplicon sequencing of respiratory samples: Does the DNA extraction method matter?
PLoS One. 2020;15:e0232215.
PubMed Abstract available

ITOKAWA K, Hu J, Sukehiro N, Tsuda Y, et al
Genetic analysis of Aedes aegypti captured at two international airports serving to the Greater Tokyo Area during 2012-2015.
PLoS One. 2020;15:e0232192.
PubMed Abstract available

NAKANO D, Kawaguchi T, Iwamoto H, Hayakawa M, et al
Effects of canagliflozin on growth and metabolic reprograming in hepatocellular carcinoma cells: Multi-omics analysis of metabolomics and absolute quantification proteomics (iMPAQT).
PLoS One. 2020;15:e0232283.
PubMed Abstract available

ZHAO H, Beck B, Fuller A, Peatman E, et al
EasyParallel: A GUI platform for parallelization of STRUCTURE and NEWHYBRIDS analyses.
PLoS One. 2020;15:e0232110.
PubMed Abstract available

ENDO C, Watanabe K
Morphological variation associated with trophic niche expansion within a lake population of a benthic fish.
PLoS One. 2020;15:e0232114.
PubMed Abstract available

WANG H, Xie Y, Zhang H, Jin J, et al
Quantitative proteomic analysis reveals the influence of plantaricin BM-1 on metabolic pathways and peptidoglycan synthesis in Escherichia coli K12.
PLoS One. 2020;15:e0231975.
PubMed Abstract available

SMITH JM, Lathara M, Wright H, Hill B, et al
Advancing clinical cohort selection with genomics analysis on a distributed platform.
PLoS One. 2020;15:e0231826.
PubMed Abstract available

EXNER EC, Geurts AM, Hoffmann BR, Casati M, et al
Interaction between Mas1 and AT1RA contributes to enhancement of skeletal muscle angiogenesis by angiotensin-(1-7) in Dahl salt-sensitive rats.
PLoS One. 2020;15:e0232067.
PubMed Abstract available

MANENZHE RI, Dube FS, Wright M, Lennard K, et al
Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing.
PLoS One. 2020;15:e0231887.
PubMed Abstract available

CHITTEM K, Yajima WR, Goswami RS, Del Rio Mendoza LE, et al
Transcriptome analysis of the plant pathogen Sclerotinia sclerotiorum interaction with resistant and susceptible canola (Brassica napus) lines.
PLoS One. 2020;15:e0229844.
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THORNE MAS, Britovsek NK, Hawkins L, Lilley KS, et al
Proteomics of intracellular freezing survival.
PLoS One. 2020;15:e0233048.
PubMed Abstract available

KREDENS KV, Martins JV, Dordal OB, Ferrandin M, et al
Vertical lossless genomic data compression tools for assembled genomes: A systematic literature review.
PLoS One. 2020;15:e0232942.
PubMed Abstract available

ROJAS LA, Scully E, Enders L, Timm A, et al
Comparative transcriptomics of Diuraphis noxia and Schizaphis graminum fed wheat plants containing different aphid-resistance genes.
PLoS One. 2020;15:e0233077.
PubMed Abstract available

STRIJK JS, Binh HT, Ngoc NV, Pereira JT, et al
Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea.
PLoS One. 2020;15:e0232936.
PubMed Abstract available

LARUPA SANTOS J, Rodriguez I, S Olesen M, Hjorth Bentzen B, et al
Investigating gene-microRNA networks in atrial fibrillation patients with mitral valve regurgitation.
PLoS One. 2020;15:e0232719.
PubMed Abstract available

DAEMI-SAEIDABAD M, Shojaeiyan A, Vivian-Smith A, Stenoien HK, et al
The taxonomic significance of ddRADseq based microsatellite markers in the closely related species of Heracleum (Apiaceae).
PLoS One. 2020;15:e0232471.
PubMed Abstract available

MELO DCM, Lira SMA, Moreira APB, Freitas L, et al
Genetic diversity and connectivity of Flaccisagitta enflata (Chaetognatha: Sagittidae) in the tropical Atlantic ocean (northeastern Brazil).
PLoS One. 2020;15:e0231574.
PubMed Abstract available

LI J, Li J, Zhao WG, Sun HD, et al
Comprehensive proteomics and functional annotation of mouse brown adipose tissue.
PLoS One. 2020;15:e0232084.
PubMed Abstract available

RINALDI J, Sokol ES, Hartmaier RJ, Trabucco SE, et al
The genomic landscape of metastatic breast cancer: Insights from 11,000 tumors.
PLoS One. 2020;15:e0231999.
PubMed Abstract available

WOOD DA, Rose JP, Halstead BJ, Stoelting RE, et al
Combining genetic and demographic monitoring better informs conservation of an endangered urban snake.
PLoS One. 2020;15:e0231744.
PubMed Abstract available

FANG H, Liu H, Ma R, Liu Y, et al
Genome-wide assessment of population structure and genetic diversity of Chinese Lou onion using specific length amplified fragment (SLAF) sequencing.
PLoS One. 2020;15:e0231753.
PubMed Abstract available

CAI L, Tong J, Zhang Z, Zhang Y, et al
Staphylococcus aureus-induced proteomic changes in the mammary tissue of rats: A TMT-based study.
PLoS One. 2020;15:e0231168.
PubMed Abstract available

HONG JY, Kim JH
PG-path: Modeling and personalizing pharmacogenomics-based pathways.
PLoS One. 2020;15:e0230950.
PubMed Abstract available

BAI H, Sun K, Wu JH, Zhong ZH, et al
Proteomic and metabolomic characterization of cardiac tissue in acute myocardial ischemia injury rats.
PLoS One. 2020;15:e0231797.
PubMed Abstract available

AGARWAL A, Park S, Ha S, Kwon JS, et al
Quantitative mass spectrometric analysis of the mouse cerebral cortex after ischemic stroke.
PLoS One. 2020;15:e0231978.
PubMed Abstract available

ALOMAIRI J, Molitor AM, Sadouni N, Hussain S, et al
Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene.
PLoS One. 2020;15:e0233191.
PubMed Abstract available

OKORIE-KANU OJ, Anyanwu MU, Ezenduka EV, Mgbeahuruike AC, et al
Molecular epidemiology, genetic diversity and antimicrobial resistance of Staphylococcus aureus isolated from chicken and pig carcasses, and carcass handlers.
PLoS One. 2020;15:e0232913.
PubMed Abstract available

CHANTZI E, Neidlin M, Macheras GA, Alexopoulos LG, et al
COMBSecretomics: A pragmatic methodological framework for higher-order drug combination analysis using secretomics.
PLoS One. 2020;15:e0232989.
PubMed Abstract available

TSAI HY, Cericola F, Edriss V, Andersen JR, et al
Use of multiple traits genomic prediction, genotype by environment interactions and spatial effect to improve prediction accuracy in yield data.
PLoS One. 2020;15:e0232665.
PubMed Abstract available

ULLRICH T, Weirich S, Jeltsch A
Development of an epigenetic tetracycline sensor system based on DNA methylation.
PLoS One. 2020;15:e0232701.
PubMed Abstract available

KAEWSEEKHAO B, Roytrakul S, Yingchutrakul Y, Salao K, et al
Proteomic analysis of infected primary human leucocytes revealed PSTK as potential treatment-monitoring marker for active and latent tuberculosis.
PLoS One. 2020;15:e0231834.
PubMed Abstract available

ROUDNICKY P, Potesil D, Zdrahal Z, Gelnar M, et al
Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea).
PLoS One. 2020;15:e0231681.
PubMed Abstract available

WANG H, Lu Z, Bao Y, Yang Y, et al
Clinical diagnostic application of metagenomic next-generation sequencing in children with severe nonresponding pneumonia.
PLoS One. 2020;15:e0232610.
PubMed Abstract available

CHEN R, Lin J
Identification of feature risk pathways of smoking-induced lung cancer based on SVM.
PLoS One. 2020;15:e0233445.
PubMed Abstract available

VAN JAD, Clotet-Freixas S, Hauschild AC, Batruch I, et al
Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes.
PLoS One. 2020;15:e0233639.
PubMed Abstract available

SWANSON KM, Zhu Y, Rojas RL, St Sauver JL, et al
Comparing outcomes and costs among warfarin-sensitive patients versus warfarin-insensitive patients using The Right Drug, Right Dose, Right Time: Using genomic data to individualize treatment (RIGHT) 10K warfarin cohort.
PLoS One. 2020;15:e0233316.
PubMed Abstract available

WANG XY, Wang MM, Chen C, Wang XQ, et al
Genetic variation and phylogeographic structure of Spodoptera exigua in western China based on mitochondrial DNA and microsatellite markers.
PLoS One. 2020;15:e0233133.
PubMed Abstract available

MUKOLWE LD, Odongo DO, Byaruhanga C, Snyman LP, et al
Analysis of p67 allelic sequences reveals a subtype of allele type 1 unique to buffalo-derived Theileria parva parasites from southern Africa.
PLoS One. 2020;15:e0231434.
PubMed Abstract available

SARKES A, Fu H, Feindel D, Harding M, et al
Development and evaluation of a loop-mediated isothermal amplification (LAMP) assay for the detection of Tomato brown rugose fruit virus (ToBRFV).
PLoS One. 2020;15:e0230403.
PubMed Abstract available

KUMAR SH, Athimoolam K, Suraj M, Das Christu Das MS, et al
Comprehensive genetic analysis of 961 unrelated Duchenne Muscular Dystrophy patients: Focus on diagnosis, prevention and therapeutic possibilities.
PLoS One. 2020;15:e0232654.
PubMed Abstract available

KATAM R, Shokri S, Murthy N, Singh SK, et al
Proteomics, physiological, and biochemical analysis of cross tolerance mechanisms in response to heat and water stresses in soybean.
PLoS One. 2020;15:e0233905.
PubMed Abstract available

EASTERLING KA, Pitra NJ, Morcol TB, Aquino JR, et al
Identification of tandem repeat families from long-read sequences of Humulus lupulus.
PLoS One. 2020;15:e0233971.
PubMed Abstract available

BAULIN EF, Kulakovskiy IV, Roytberg MA, Astakhova TV, et al
Brain-related genes are specifically enriched with long phase 1 introns.
PLoS One. 2020;15:e0233978.
PubMed Abstract available

MACAGNO A, Athanasiou A, Wittig A, Huber R, et al
Analytical performance of thrombospondin-1 and cathepsin D immunoassays part of a novel CE-IVD marked test as an aid in the diagnosis of prostate cancer.
PLoS One. 2020;15:e0233442.
PubMed Abstract available

PAIJMANS JLA, Barlow A, Henneberger K, Fickel J, et al
Ancestral mitogenome capture of the Southeast Asian banded linsang.
PLoS One. 2020;15:e0234385.
PubMed Abstract available

RUMBOU A, Candresse T, Marais A, Svanella-Dumas L, et al
Unravelling the virome in birch: RNA-Seq reveals a complex of known and novel viruses.
PLoS One. 2020;15:e0221834.
PubMed Abstract available

TODA Y, Wakatsuki H, Aoike T, Kajiya-Kanegae H, et al
Predicting biomass of rice with intermediate traits: Modeling method combining crop growth models and genomic prediction models.
PLoS One. 2020;15:e0233951.
PubMed Abstract available

WOOD D, Besnard G, Beerling DJ, Osborne CP, et al
Phylogenomics indicates the "living fossil" Isoetes diversified in the Cenozoic.
PLoS One. 2020;15:e0227525.
PubMed Abstract available

HILLMAN RT, Cardnell R, Fujimoto J, Lee WC, et al
Comparative genomics of high grade neuroendocrine carcinoma of the cervix.
PLoS One. 2020;15:e0234505.
PubMed Abstract available

YADAV P, Kumar A, Hussain SA, Gupta SK, et al
Evaluation of the effect of longitudinal connectivity in population genetic structure of endangered golden mahseer, Tor putitora (Cyprinidae), in Himalayan rivers: Implications for its conservation.
PLoS One. 2020;15:e0234377.
PubMed Abstract available

REMON J, Swalduz A, Planchard D, Ortiz-Cuaran S, et al
Outcomes in oncogenic-addicted advanced NSCLC patients with actionable mutations identified by liquid biopsy genomic profiling using a tagged amplicon-based NGS assay.
PLoS One. 2020;15:e0234302.
PubMed Abstract available

HINDERER EW 3RD, Moseley HNB
GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts.
PLoS One. 2020;15:e0233311.
PubMed Abstract available

VIKAL Y, Kaur A, Jindal J, Kaur K, et al
Identification of genomic regions associated with shoot fly resistance in maize and their syntenic relationships in the sorghum genome.
PLoS One. 2020;15:e0234335.
PubMed Abstract available

WANG S, Yan Z, Wang P, Zheng X, et al
Comparative metagenomics reveals the microbial diversity and metabolic potentials in the sediments and surrounding seawaters of Qinhuangdao mariculture area.
PLoS One. 2020;15:e0234128.
PubMed Abstract available

JOYCE WG, Mauser M
New material of named fossil turtles from the Late Jurassic (late Kimmeridgian) of Wattendorf, Germany.
PLoS One. 2020;15:e0233483.
PubMed Abstract available

HERMES TR, Frachetti MD, Voyakin D, Yerlomaeva AS, et al
High mitochondrial diversity of domesticated goats persisted among Bronze and Iron Age pastoralists in the Inner Asian Mountain Corridor.
PLoS One. 2020;15:e0233333.
PubMed Abstract available

KONTOPOULOS I, Penkman K, Mullin VE, Winkelbach L, et al
Screening archaeological bone for palaeogenetic and palaeoproteomic studies.
PLoS One. 2020;15:e0235146.
PubMed Abstract available

BAGNARESI P, Cattivelli L
Ab initio GO-based mining for non-tandem-duplicated functional clusters in three model plant diploid genomes.
PLoS One. 2020;15:e0234782.
PubMed Abstract available

ALMOMANI BA, Al-Sawalha NA, Al-Keilani MS, Aman HA, et al
The difference in knowledge and concerns between healthcare professionals and patients about genetic-related issues: A questionnaire-based study.
PLoS One. 2020;15:e0235001.
PubMed Abstract available

CHANDRASHEKAR DS, Golonka RM, Yeoh BS, Gonzalez DJ, et al
Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer.
PLoS One. 2020;15:e0234726.
PubMed Abstract available

XIE L, Varathan P, Nho K, Saykin AJ, et al
Identification of functionally connected multi-omic biomarkers for Alzheimer's disease using modularity-constrained Lasso.
PLoS One. 2020;15:e0234748.
PubMed Abstract available

VANANI FR, Shabani L, Sabzalian MR, Dehghanian F, et al
Comparative physiological and proteomic analysis indicates lower shock response to drought stress conditions in a self-pollinating perennial ryegrass.
PLoS One. 2020;15:e0234317.
PubMed Abstract available

JACOBS-SERA D, Abad LA, Alvey RM, Anders KR, et al
Genomic diversity of bacteriophages infecting Microbacterium spp.
PLoS One. 2020;15:e0234636.
PubMed Abstract available

PANAHI B, Hejazi MA
Integrative analysis of gene expression and alternative splicing in microalgae grown under heterotrophic condition.
PLoS One. 2020;15:e0234710.
PubMed Abstract available

KHALAF L, Timm A, Chuang WP, Enders L, et al
Modeling Aceria tosichella biotype distribution over geographic space and time.
PLoS One. 2020;15:e0233507.
PubMed Abstract available

TUREK C, Wrobel S, Piwowar M
OmicsON - Integration of omics data with molecular networks and statistical procedures.
PLoS One. 2020;15:e0235398.
PubMed Abstract available

XINQIANG S, Erqin D, Yu Z, Hongtao D, et al
Potential mechanisms of action of celastrol against rheumatoid arthritis: Transcriptomic and proteomic analysis.
PLoS One. 2020;15:e0233814.
PubMed Abstract available

FERNANDO HSD, Hapugoda M, Perera R, Black Iv WC, et al
Mitochondrial metabolic genes provide phylogeographic relationships of global collections of Aedes aegypti (Diptera: Culicidae).
PLoS One. 2020;15:e0235430.
PubMed Abstract available

ONIMARU K, Nishimura O, Kuraku S
Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information.
PLoS One. 2020;15:e0235748.
PubMed Abstract available

LUISI P, Garcia A, Berros JM, Motti JMB, et al
Fine-scale genomic analyses of admixed individuals reveal unrecognized genetic ancestry components in Argentina.
PLoS One. 2020;15:e0233808.
PubMed Abstract available

STEWART-BROWN BB, Vaughn JN, Carter TE Jr, Li Z, et al
Characterizing the impact of an exotic soybean line on elite cultivar development.
PLoS One. 2020;15:e0235434.
PubMed Abstract available

ROSSI NA, Menchaca-Rodriguez A, Antelo R, Wilson B, et al
High levels of population genetic differentiation in the American crocodile (Crocodylus acutus).
PLoS One. 2020;15:e0235288.
PubMed Abstract available

GU S, Milenkovic T
Data-driven network alignment.
PLoS One. 2020;15:e0234978.
PubMed Abstract available

LAZENSKY R, Hunter ME, Moraga Amador D, Al-Khedery B, et al
Investigating the gene expression profiles of rehabilitated Florida manatees (Trichechus manatus latirostris) following red tide exposure.
PLoS One. 2020;15:e0234150.
PubMed Abstract available

LUO J, Ren R, Guo K
The deformation monitoring of foundation pit by back propagation neural network and genetic algorithm and its application in geotechnical engineering.
PLoS One. 2020;15:e0233398.
PubMed Abstract available

AKOHOUE F, Achigan-Dako EG, Sneller C, Van Deynze A, et al
Genetic diversity, SNP-trait associations and genomic selection accuracy in a west African collection of Kersting's groundnut [Macrotyloma geocarpum(Harms) Marechal & Baudet].
PLoS One. 2020;15:e0234769.
PubMed Abstract available

HOLM M, Nummela P, Heiskanen A, Satomaa T, et al
N-glycomic profiling of colorectal cancer according to tumor stage and location.
PLoS One. 2020;15:e0234989.
PubMed Abstract available

VALDES A, Castro-Puyana M, Garcia-Pastor C, Lucio-Cazana FJ, et al
Time-series proteomic study of the response of HK-2 cells to hyperglycemic, hypoxic diabetic-like milieu.
PLoS One. 2020;15:e0235118.
PubMed Abstract available

YADAV C, Smith ML, Yack JE
Transcriptome analysis of a social caterpillar, Drepana arcuata: De novo assembly, functional annotation and developmental analysis.
PLoS One. 2020;15:e0234903.
PubMed Abstract available

SHAMSADDINI A, Dadkhah K, Gillevet PM
BiomMiner: An advanced exploratory microbiome analysis and visualization pipeline.
PLoS One. 2020;15:e0234860.
PubMed Abstract available

TRILLA-FUERTES L, Gamez-Pozo A, Arevalillo JM, Lopez-Vacas R, et al
Bayesian networks established functional differences between breast cancer subtypes.
PLoS One. 2020;15:e0234752.
PubMed Abstract available

SHI X, Long W, Li Y, Deng D, et al
Multi-population genetic algorithm with ER network for solving flexible job shop scheduling problems.
PLoS One. 2020;15:e0233759.
PubMed Abstract available

MARTIN KR, Johnson PTJ, Bowerman J, Li J, et al
Biogeography of the freshwater gastropod, Planorbella trivolvis, in the western United States.
PLoS One. 2020;15:e0235989.
PubMed Abstract available

LAGO-BARCIA D, DaSilva MB, Conti LA, Carbayo F, et al
Areas of endemism of land planarians (Platyhelminthes: Tricladida) in the Southern Atlantic Forest.
PLoS One. 2020;15:e0235949.
PubMed Abstract available

JEON HS, Lee SM, Jung YM, Oh S, et al
Proteomic biomarkers in mid-trimester amniotic fluid associated with adverse pregnancy outcomes in patients with systemic lupus erythematosus.
PLoS One. 2020;15:e0235838.
PubMed Abstract available

LEAL DFDVB, Santana da Silva MN, Fernandes DCRO, Rodrigues JCG, et al
Amerindian genetic ancestry as a risk factor for tuberculosis in an amazonian population.
PLoS One. 2020;15:e0236033.
PubMed Abstract available

VANCUREN SJ, Dos Santos SJ, Hill JE
Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling.
PLoS One. 2020;15:e0235682.
PubMed Abstract available

THOMAS TR, Hofammann D, McKenna BG, I R van der Miesen A, et al
Community attitudes on genetic research of gender identity, sexual orientation, and mental health.
PLoS One. 2020;15:e0235608.
PubMed Abstract available

PRESTON GW, Yang L, Phillips DH, Maier CS, et al
Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications.
PLoS One. 2020;15:e0235263.
PubMed Abstract available

DONG L, Watson J, Cao S, Arregui S, et al
Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections.
PLoS One. 2020;15:e0235328.
PubMed Abstract available

FURFARO LL, Payne MS, Chang BJ
Host range, morphological and genomic characterisation of bacteriophages with activity against clinical Streptococcus agalactiae isolates.
PLoS One. 2020;15:e0235002.
PubMed Abstract available

SUI J, Luan S, Dai P, Fu Q, et al
High accuracy of pooled DNA genotyping by 2b-RAD sequencing in the Pacific white shrimp, Litopenaeus vannamei.
PLoS One. 2020;15:e0236343.
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CAKIR AYDEMIR B, Yuksel Ozmen C, Kibar U, Mutaf F, et al
Salt stress induces endoplasmic reticulum stress-responsive genes in a grapevine rootstock.
PLoS One. 2020;15:e0236424.
PubMed Abstract available

GAZENGEL K, Lebreton L, Lapalu N, Amselem J, et al
pH effect on strain-specific transcriptomes of the take-all fungus.
PLoS One. 2020;15:e0236429.
PubMed Abstract available

NIU B, Martinelli Ii M, Jiao Y, Wang C, et al
Nonspecific cleavages arising from reconstitution of trypsin under mildly acidic conditions.
PLoS One. 2020;15:e0236740.
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CORNEJO-JUAREZ P, Cevallos MA, Castro-Jaimes S, Castillo-Ramirez S, et al
High mortality in an outbreak of multidrug resistant Acinetobacter baumannii infection introduced to an oncological hospital by a patient transferred from a general hospital.
PLoS One. 2020;15:e0234684.
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BAILEY-STEINITZ LJ, Shih YH, Radeke MJ, Coffey PJ, et al
An in vitro model of chronic wounding and its implication for age-related macular degeneration.
PLoS One. 2020;15:e0236298.
PubMed Abstract available

BERG MG, Olivo A, Forberg K, Harris BJ, et al
Advanced molecular surveillance approaches for characterization of blood borne hepatitis viruses.
PLoS One. 2020;15:e0236046.
PubMed Abstract available

SUZUKI Y, Takadate T, Mizuma M, Shima H, et al
Stromal expression of hemopexin is associated with lymph-node metastasis in pancreatic ductal adenocarcinoma.
PLoS One. 2020;15:e0235904.
PubMed Abstract available

ALFARO GF, Novak TE, Rodning SP, Moisa SJ, et al
Preconditioning beef cattle for long-duration transportation stress with rumen-protected methionine supplementation: A nutrigenetics study.
PLoS One. 2020;15:e0235481.
PubMed Abstract available

SILVA PIT, Silva-Junior OB, Resende LV, Sousa VA, et al
A 3K Axiom SNP array from a transcriptome-wide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze.
PLoS One. 2020;15:e0230404.
PubMed Abstract available

SUBRAMANI A, Griggs P, Frantzen N, Mendez J, et al
Intracellular Cryptococcus neoformans disrupts the transcriptome profile of M1- and M2-polarized host macrophages.
PLoS One. 2020;15:e0233818.
PubMed Abstract available

KURUMBANG NP, Vera JM, Hebert AS, Coon JJ, et al
Heterologous expression of a glycosyl hydrolase and cellular reprogramming enable Zymomonas mobilis growth on cellobiose.
PLoS One. 2020;15:e0226235.
PubMed Abstract available

ELAMEEN A, Klutsch CFC, Floystad I, Knudsen GK, et al
Large-scale genetic admixture suggests high dispersal in an insect pest, the apple fruit moth.
PLoS One. 2020;15:e0236509.
PubMed Abstract available

HILDERBRAND RH, Keller SR, Laperriere SM, Santoro AE, et al
Microbial communities can predict the ecological condition of headwater streams.
PLoS One. 2020;15:e0236932.
PubMed Abstract available

NAGOSHI RN, Canarte E, Navarrete B, Pico J, et al
The genetic characterization of fall armyworm populations in Ecuador and its implications to migration and pest management in the northern regions of South America.
PLoS One. 2020;15:e0236759.
PubMed Abstract available

MAYNE B, Tucker AD, Berry O, Jarman S, et al
Lifespan estimation in marine turtles using genomic promoter CpG density.
PLoS One. 2020;15:e0236888.
PubMed Abstract available

STEINERT RE, Rehman A, Souto Lima EJ, Agamennone V, et al
Roux-en-Y gastric bypass surgery changes fungal and bacterial microbiota in morbidly obese patients-A pilot study.
PLoS One. 2020;15:e0236936.
PubMed Abstract available

KUMAR C, Kumar R, Singh SK, Goswami AK, et al
Development of novel g-SSR markers in guava (Psidium guajava L.) cv. Allahabad Safeda and their application in genetic diversity, population structure and cross species transferability studies.
PLoS One. 2020;15:e0237538.
PubMed Abstract available

HE J, Wu XL, Zeng Q, Li H, et al
Genomic mating as sustainable breeding for Chinese indigenous Ningxiang pigs.
PLoS One. 2020;15:e0236629.
PubMed Abstract available

MARINOS G, Kaleta C, Waschina S
Defining the nutritional input for genome-scale metabolic models: A roadmap.
PLoS One. 2020;15:e0236890.
PubMed Abstract available

NOBLE AS, Noe S, Clearwater MJ, Lee CK, et al
A core phyllosphere microbiome exists across distant populations of a tree species indigenous to New Zealand.
PLoS One. 2020;15:e0237079.
PubMed Abstract available

LI DM, Ye YJ, Xu YC, Liu JM, et al
Complete chloroplast genomes of Zingiber montanum and Zingiber zerumbet: Genome structure, comparative and phylogenetic analyses.
PLoS One. 2020;15:e0236590.
PubMed Abstract available

BRUGGEMAN SA, Horvath DP, Fennell AY, Gonzalez-Hernandez JL, et al
Teosinte (Zea mays ssp parviglumis) growth and transcriptomic response to weed stress identifies similarities and differences between varieties and with modern maize varieties.
PLoS One. 2020;15:e0237715.
PubMed Abstract available

ARROYO MUHR LS, Lagheden C, Hassan SS, Kleppe SN, et al
De novo sequence assembly requires bioinformatic checking of chimeric sequences.
PLoS One. 2020;15:e0237455.
PubMed Abstract available

WOODHOUSE R, Li M, Hughes J, Delfosse D, et al
Clinical and analytical validation of FoundationOne Liquid CDx, a novel 324-Gene cfDNA-based comprehensive genomic profiling assay for cancers of solid tumor origin.
PLoS One. 2020;15:e0237802.
PubMed Abstract available

METHE BA, Hiltbrand D, Roach J, Xu W, et al
Functional gene categories differentiate maize leaf drought-related microbial epiphytic communities.
PLoS One. 2020;15:e0237493.
PubMed Abstract available

ZHANG Z, Xiao W, Qiu J, Xin Y, et al
Nystose regulates the response of rice roots to cold stress via multiple signaling pathways: A comparative proteomics analysis.
PLoS One. 2020;15:e0238381.
PubMed Abstract available

CHOI YH, Zhang X, Srinivasamoorthy G, Purdy MA, et al
Transcriptome analysis in rhesus macaques infected with hepatitis E virus genotype 1/3 infections and genotype 1 re-infection.
PLoS One. 2020;15:e0237618.
PubMed Abstract available

CHEN X, Huang S, Jiang M, Chen Y, et al
Genome-wide identification and expression analysis of the SR gene family in longan (Dimocarpus longan Lour.).
PLoS One. 2020;15:e0238032.
PubMed Abstract available

GAAFAR YZA, Ziebell H
Comparative study on three viral enrichment approaches based on RNA extraction for plant virus/viroid detection using high-throughput sequencing.
PLoS One. 2020;15:e0237951.
PubMed Abstract available

PEREZ-RODRIGUEZ S, de Jesus Ramirez-Lira M, Wulff T, Voldbor BG, et al
Enrichment of microsomes from Chinese hamster ovary cells by subcellular fractionation for its use in proteomic analysis.
PLoS One. 2020;15:e0237930.
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CHOI SK, Kim KS, Ranyuk M, Babaev E, et al
Asia-wide phylogeography of wild boar (Sus scrofa) based on mitochondrial DNA and Y-chromosome: Revising the migration routes of wild boar in Asia.
PLoS One. 2020;15:e0238049.
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KWAK GY, Goo E, Jeong H, Hwang I, et al
Adverse effects of adaptive mutation to survive static culture conditions on successful fitness of the rice pathogen Burkholderia glumae in a host.
PLoS One. 2020;15:e0238151.
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HAN R, Wei Y, Xie Y, Liu L, et al
Quantitative phosphoproteomic analysis provides insights into the aluminum-responsiveness of Tamba black soybean.
PLoS One. 2020;15:e0237845.
PubMed Abstract available

HASAN M, Azim KF, Imran MAS, Chowdhury IM, et al
Comprehensive genome based analysis of Vibrio parahaemolyticus for identifying novel drug and vaccine molecules: Subtractive proteomics and vaccinomics approach.
PLoS One. 2020;15:e0237181.
PubMed Abstract available

YUN SA, Son HD, Im HT, Kim SC, et al
Genetic diversity and population structure of the endangered orchid Pelatantheria scolopendrifolia (Orchidaceae) in Korea.
PLoS One. 2020;15:e0237546.
PubMed Abstract available

KORONA D, Nightingale D, Fabre B, Nelson M, et al
Characterisation of protein isoforms encoded by the Drosophila Glycogen Synthase Kinase 3 gene shaggy.
PLoS One. 2020;15:e0236679.
PubMed Abstract available

REN X, Kuan PF
RNAAgeCalc: A multi-tissue transcriptional age calculator.
PLoS One. 2020;15:e0237006.
PubMed Abstract available

DADJO C, Nyende AB, Yao N, Kiplangat N, et al
Genome-wide genetic diversity and population structure of Garcinia kola (Heckel) in Benin using DArT-Seq technology.
PLoS One. 2020;15:e0238984.
PubMed Abstract available

MEISSNER K, Lutter D, von Toerne C, Haile A, et al
Molecular classification of the placebo effect in nausea.
PLoS One. 2020;15:e0238533.
PubMed Abstract available

CRANDALL SG, Gold KM, Jimenez-Gasco MDM, Filgueiras CC, et al
A multi-omics approach to solving problems in plant disease ecology.
PLoS One. 2020;15:e0237975.
PubMed Abstract available

POORMOHAMMADI H, Sardari Zarchi M
Netcombin: An algorithm for constructing optimal phylogenetic network from rooted triplets.
PLoS One. 2020;15:e0227842.
PubMed Abstract available

SONDERTOFT NB, Vogt JK, Arumugam M, Kristensen M, et al
The intestinal microbiome is a co-determinant of the postprandial plasma glucose response.
PLoS One. 2020;15:e0238648.
PubMed Abstract available

CRANDALL H, Kapusta A, Killpack J, Heyrend C, et al
Clinical and molecular epidemiology of invasive Staphylococcus aureus infection in Utah children; continued dominance of MSSA over MRSA.
PLoS One. 2020;15:e0238991.
PubMed Abstract available

CHAN LM, Painter CW, Hill MT, Hibbitts TJ, et al
Phylogeographic structure of the dunes sagebrush lizard, an endemic habitat specialist.
PLoS One. 2020;15:e0238194.
PubMed Abstract available

ZHANG W, Xu S, Shi L, Zhu Z, et al
Construction and analysis of a competing endogenous RNA network to reveal potential prognostic biomarkers for Oral Floor Squamous Cell Carcinoma.
PLoS One. 2020;15:e0238420.
PubMed Abstract available

BODEWES R, Reijnen L, Kerkhof J, Cremer J, et al
Molecular epidemiology of mumps viruses in the Netherlands, 2017-2019.
PLoS One. 2020;15:e0233143.
PubMed Abstract available

CAO H, He X, Du J, Zhang R, et al
Time-series transcriptomic analysis reveals novel gene modules that control theanine biosynthesis in tea plant (Camellia sinensis).
PLoS One. 2020;15:e0238175.
PubMed Abstract available

ZHA W, You A
Comparative iTRAQ proteomic profiling of proteins associated with the adaptation of brown planthopper to moderately resistant vs. susceptible rice varieties.
PLoS One. 2020;15:e0238549.
PubMed Abstract available

GUERREIRO EM, Ovstebo R, Thiede B, Costea DE, et al
Cancer cell line-specific protein profiles in extracellular vesicles identified by proteomics.
PLoS One. 2020;15:e0238591.
PubMed Abstract available

BARTLETT JMS, Bayani J, Kornaga EN, Danaher P, et al
Computational approaches to support comparative analysis of multiparametric tests: Modelling versus Training.
PLoS One. 2020;15:e0238593.
PubMed Abstract available

AKGUN E, Tuzuner MB, Sahin B, Kilercik M, et al
Proteins associated with neutrophil degranulation are upregulated in nasopharyngeal swabs from SARS-CoV-2 patients.
PLoS One. 2020;15:e0240012.
PubMed Abstract available

GHODOUSI A, Borroni E, Peracchi M, Palu G, et al
Genomic analysis of cardiac surgery-associated Mycobacterium chimaera infections in Italy.
PLoS One. 2020;15:e0239273.
PubMed Abstract available

HEBERT L, Hillman P, Baker C, Brown M, et al
Burden of rare deleterious variants in WNT signaling genes among 511 myelomeningocele patients.
PLoS One. 2020;15:e0239083.
PubMed Abstract available

DUMIDAE A, Janthu P, Subkrasae C, Pumidonming W, et al
Genetic analysis of Cryptozona siamensis (Stylommatophora, Ariophantidae) populations in Thailand using the mitochondrial 16S rRNA and COI sequences.
PLoS One. 2020;15:e0239264.
PubMed Abstract available

PLANT EP, Manukyan H, Laassri M, Ye Z, et al
Insights from the comparison of genomic variants from two influenza B viruses grown in the presence of human antibodies in cell culture.
PLoS One. 2020;15:e0239015.
PubMed Abstract available

ISHIKAWA Y, Nakai K
A hypothetical trivalent epigenetic code that affects the nature of human ESCs.
PLoS One. 2020;15:e0238742.
PubMed Abstract available

BARKER H, Parkkila S
Bioinformatic characterization of angiotensin-converting enzyme 2, the entry receptor for SARS-CoV-2.
PLoS One. 2020;15:e0240647.
PubMed Abstract available

PAVLIKOVA N, Sramek J, Jelinek M, Halada P, et al
Markers of acute toxicity of DDT exposure in pancreatic beta-cells determined by a proteomic approach.
PLoS One. 2020;15:e0229430.
PubMed Abstract available

GUTIERREZ M, Smith R
XFlow: An algorithm for extracting ion chromatograms.
PLoS One. 2020;15:e0227659.
PubMed Abstract available

SUPELETO FA, Santos BF, Basilio LA, Aguiar AP, et al
Species delimitation, environmental cline and phylogeny for a new Neotropical genus of Cryptinae (Ichneumonidae).
PLoS One. 2020;15:e0237233.
PubMed Abstract available

HADI S, Andayani N, Muttaqin E, Simeon BM, et al
Genetic connectivity of the scalloped hammerhead shark Sphyrna lewini across Indonesia and the Western Indian Ocean.
PLoS One. 2020;15:e0230763.
PubMed Abstract available

SILVA RRD, Vilela B, Silva DP, Andrade AFA, et al
The role of ecological niche evolution on diversification patterns of birds distinctly distributed between the Amazonia and Atlantic rainforests.
PLoS One. 2020;15:e0238729.
PubMed Abstract available

ABUIN JM, Lopes N, Ferreira L, Pena TF, et al
Big Data in metagenomics: Apache Spark vs MPI.
PLoS One. 2020;15:e0239741.
PubMed Abstract available

DU J, Xia J, Li S, Shen Y, et al
Evolutionary dynamics and transmission patterns of Newcastle disease virus in China through Bayesian phylogeographical analysis.
PLoS One. 2020;15:e0239809.
PubMed Abstract available

SEO HS, Kim SH, Kim SC
Chloroplast DNA insights into the phylogenetic position and anagenetic speciation of Phedimus takesimensis (Crassulaceae) on Ulleung and Dokdo Islands, Korea.
PLoS One. 2020;15:e0239734.
PubMed Abstract available

AFRIN K, Iquebal AS, Karimi M, Souris A, et al
Directionally dependent multi-view clustering using copula model.
PLoS One. 2020;15:e0238996.
PubMed Abstract available

KETEMA S, Tesfaye B, Keneni G, Amsalu Fenta B, et al
DArTSeq SNP-based markers revealed high genetic diversity and structured population in Ethiopian cowpea [Vigna unguiculata (L.) Walp] germplasms.
PLoS One. 2020;15:e0239122.
PubMed Abstract available

SASAKI N, Iwaya T, Chiba T, Fujita M, et al
Analysis of mutational and proteomic heterogeneity of gastric cancer suggests an effective pipeline to monitor post-treatment tumor burden using circulating tumor DNA.
PLoS One. 2020;15:e0239966.
PubMed Abstract available

MAKOUKJI J, El-Sitt S, Makhoul NJ, Soueid J, et al
Sex differences in gene expression with galactosylceramide treatment in Cln3Deltaex7/8 mice.
PLoS One. 2020;15:e0239537.
PubMed Abstract available

TONIONE MA, Bi K, Tsutsui ND
Transcriptomic signatures of cold adaptation and heat stress in the winter ant (Prenolepis imparis).
PLoS One. 2020;15:e0239558.
PubMed Abstract available

FADDA M, Chappuis PO, Katapodi MC, Pagani O, et al
Physicians communicating with women at genetic risk of breast and ovarian cancer: Are we in the middle of the ford between contradictory messages and unshared decision making?
PLoS One. 2020;15:e0240054.
PubMed Abstract available

BLANCO JC, Ballesteros F, Palomero G, Lopez-Bao JV, et al
Not exodus, but population increase and gene flow restoration in Cantabrian brown bear (Ursus arctos) subpopulations. Comment on Gregorio et al. 2020.
PLoS One. 2020;15:e0240698.
PubMed Abstract available

BRITO PM, Figueiredo FJ, Leal MEC
A revision of Laeliichthys ancestralis Santos, 1985 (Teleostei: Osteoglossomorpha) from the Lower Cretaceous of Brazil: Phylogenetic relationships and biogeographical implications.
PLoS One. 2020;15:e0241009.
PubMed Abstract available

BO C, Geng X, Zhang J, Sai L, et al
Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology.
PLoS One. 2020;15:e0241310.
PubMed Abstract available

SUNDMAN AS, Pertille F, Lehmann Coutinho L, Jazin E, et al
DNA methylation in canine brains is related to domestication and dog-breed formation.
PLoS One. 2020;15:e0240787.
PubMed Abstract available

WU B, Jiang S, Wang X, Zhong S, et al
Identification of driver genes and key pathways of non-functional pituitary adenomas predicts the therapeutic effect of STO-609.
PLoS One. 2020;15:e0240230.
PubMed Abstract available

PERLEJEWSKI K, Bukowska-Osko I, Rydzanicz M, Dzieciatkowski T, et al
Search for viral agents in cerebrospinal fluid in patients with multiple sclerosis using real-time PCR and metagenomics.
PLoS One. 2020;15:e0240601.
PubMed Abstract available

KO G, Jang I, Koo N, Park SJ, et al
Prometheus, an omics portal for interkingdom comparative genomic analyses.
PLoS One. 2020;15:e0240191.
PubMed Abstract available

LIU L, Wang R, Ding H, Tian L, et al
The utility of urinary biomarker panel in predicting renal pathology and treatment response in Chinese lupus nephritis patients.
PLoS One. 2020;15:e0240942.
PubMed Abstract available

ABSHIRU NA, Sikora JW, Camarillo JM, Morris JA, et al
Targeted detection and quantitation of histone modifications from 1,000 cells.
PLoS One. 2020;15:e0240829.
PubMed Abstract available

IVANOV DK, Bostelmann G, Lan-Leung B, Williams J, et al
A novel computational approach for predicting complex phenotypes in Drosophila (starvation-sensitive and sterile) by deriving their gene expression signatures from public data.
PLoS One. 2020;15:e0240824.
PubMed Abstract available

LEBEDEV A, Pasechnik O, Ozhmegova E, Antonova A, et al
Prevalence and spatiotemporal dynamics of HIV-1 Circulating Recombinant Form 03_AB (CRF03_AB) in the Former Soviet Union countries.
PLoS One. 2020;15:e0241269.
PubMed Abstract available

VISHNUKIRAN T, Neeraja CN, Jaldhani V, Vijayalakshmi P, et al
A major pleiotropic QTL identified for yield components and nitrogen content in rice (Oryza sativa L.) under differential nitrogen field conditions.
PLoS One. 2020;15:e0240854.
PubMed Abstract available

HIRAI N, Kasahara K, Nakano R, Ogawa Y, et al
Clinical characteristics and molecular epidemiology of invasive Streptococcus agalactiae infections between 2007 and 2016 in Nara, Japan.
PLoS One. 2020;15:e0240590.
PubMed Abstract available

MILUCKY J, Pondo T, Gregory CJ, Iuliano D, et al
The epidemiology and estimated etiology of pathogens detected from the upper respiratory tract of adults with severe acute respiratory infections in multiple countries, 2014-2015.
PLoS One. 2020;15:e0240309.
PubMed Abstract available

GAO Y, Zhu C, Li K, Cheng X, et al
Comparative proteomics analysis of dietary restriction in Drosophila.
PLoS One. 2020;15:e0240596.
PubMed Abstract available

MOGAKA JJO, Chimbari MJ
The mediating effects of public genomic knowledge in precision medicine implementation: A structural equation model approach.
PLoS One. 2020;15:e0240585.
PubMed Abstract available

INGASIA LAO, Kostaki EG, Paraskevis D, Kramvis A, et al
Global and regional dispersal patterns of hepatitis B virus genotype E from and in Africa: A full-genome molecular analysis.
PLoS One. 2020;15:e0240375.
PubMed Abstract available

KRISHNAKUMARIAMMA K, Ellappan K, Muthuraj M, Tamilarasu K, et al
Molecular diagnosis, genetic diversity and drug sensitivity patterns of Mycobacterium tuberculosis strains isolated from tuberculous meningitis patients at a tertiary care hospital in South India.
PLoS One. 2020;15:e0240257.
PubMed Abstract available

CHEN ZY, Xie DF, Liu ZY, Zhong YQ, et al
Identification of the significant pathways of Banxia Houpu decoction in the treatment of depression based on network pharmacology.
PLoS One. 2020;15:e0239843.
PubMed Abstract available

DANG H, Polineni D, Pace RG, Stonebraker JR, et al
Mining GWAS and eQTL data for CF lung disease modifiers by gene expression imputation.
PLoS One. 2020;15:e0239189.
PubMed Abstract available

DU S, Li J, Bian N
A compression method for DNA.
PLoS One. 2020;15:e0238220.
PubMed Abstract available

KUSCH N, Schuppert A
Two-step multi-omics modelling of drug sensitivity in cancer cell lines to identify driving mechanisms.
PLoS One. 2020;15:e0238961.
PubMed Abstract available

WANG C, Ma X, Ren M, Tang L, et al
Genetic diversity and population structure in the endangered tree Hopea hainanensis (Dipterocarpaceae) on Hainan Island, China.
PLoS One. 2020;15:e0241452.
PubMed Abstract available

STERN F, Delaval M, Kampourakis K, Muller A, et al
Implicit associations of teleology and essentialism concepts with genetics concepts among secondary school students.
PLoS One. 2020;15:e0242189.
PubMed Abstract available

VEZINA B, Petit GA, Martin JL, Halili MA, et al
Prediction of Burkholderia pseudomallei DsbA substrates identifies potential virulence factors and vaccine targets.
PLoS One. 2020;15:e0241306.
PubMed Abstract available

ALKANDARI SA, Bhardwaj RG, Ellepola A, Karched M, et al
Proteomics of extracellular vesicles produced by Granulicatella adiacens, which causes infective endocarditis.
PLoS One. 2020;15:e0227657.
PubMed Abstract available

ZHAO C, Ni H, Zhao L, Zhou L, et al
High nitrogen concentration alter microbial community in Allium fistulosum rhizosphere.
PLoS One. 2020;15:e0241371.
PubMed Abstract available

DAGTEKIN D, Sahan EA, Denk T, Kose N, et al
Past, present and future distributions of Oriental beech (Fagus orientalis) under climate change projections.
PLoS One. 2020;15:e0242280.
PubMed Abstract available

HUANG B, Gan L, Chen D, Zhang Y, et al
Integration of small RNA, degradome and proteome sequencing in Oryza sativa reveals a delayed senescence network in tetraploid rice seed.
PLoS One. 2020;15:e0242260.
PubMed Abstract available

MO W, Ding Y, Zhao S, Zou D, et al
Identification of a 6-gene signature for the survival prediction of breast cancer patients based on integrated multi-omics data analysis.
PLoS One. 2020;15:e0241924.
PubMed Abstract available

SAJULGA R, Easterly C, Riffle M, Mesuere B, et al
Survey of metaproteomics software tools for functional microbiome analysis.
PLoS One. 2020;15:e0241503.
PubMed Abstract available

OU J, Liu H, Nirala NK, Stukalov A, et al
dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data.
PLoS One. 2020;15:e0242030.
PubMed Abstract available

SANGKAEW O, Phaonakrop N, Roytrakul S, Yompakdee C, et al
Metaproteomic investigation of functional insight into special defined microbial starter on production of fermented rice with melanogenesis inhibition activity.
PLoS One. 2020;15:e0241819.
PubMed Abstract available

WEBB JL, Bries AE, Vogel B, Carrillo C, et al
Whole egg consumption increases gene expression within the glutathione pathway in the liver of Zucker Diabetic Fatty rats.
PLoS One. 2020;15:e0240885.
PubMed Abstract available

LIU EM, Luna A, Dong G, Sander C, et al
netboxr: Automated discovery of biological process modules by network analysis in R.
PLoS One. 2020;15:e0234669.
PubMed Abstract available

DEY SK, Sharif N, Sarkar OS, Sarkar MK, et al
Molecular epidemiology and surveillance of circulating rotavirus among children with gastroenteritis in Bangladesh during 2014-2019.
PLoS One. 2020;15:e0242813.
PubMed Abstract available

TURK S, Turk C, Akbar MW, Kucukkaraduman B, et al
Renin angiotensin system genes are biomarkers for personalized treatment of acute myeloid leukemia with Doxorubicin as well as etoposide.
PLoS One. 2020;15:e0242497.
PubMed Abstract available

LI J, Ye GY, Liu HL, Wang ZH, et al
Complete chloroplast genomes of three important species, Abelmoschus moschatus, A. manihot and A. sagittifolius: Genome structures, mutational hotspots, comparative and phylogenetic analysis in Malvaceae.
PLoS One. 2020;15:e0242591.
PubMed Abstract available

FENG X, Lai RL, Gao MX, Chen WG, et al
Characterization and complete genome sequences of two novel variants of the family Closteroviridae from Chinese kiwifruit.
PLoS One. 2020;15:e0242362.
PubMed Abstract available

NGAMNIYOM A
Molecular assessment and transcriptome profiling of wild fish populations of Oryzias mekongensis and O. songkhramensis (Adrianichthyidae: Beloniformes) from Thailand.
PLoS One. 2020;15:e0242382.
PubMed Abstract available

GALATAUD J, Delatte H, Techer MA, Simiand C, et al
When European meets African honeybees (Apis mellifera L.) in the tropics: Morphological changes related to genetics in Mauritius Island (South-West Indian Ocean).
PLoS One. 2020;15:e0242053.
PubMed Abstract available

WINNARD PT JR, Vesuna F, Muthukumar S, Raman V, et al
Divergent organ-specific isogenic metastatic cell lines identified using multi-omics exhibit differential drug sensitivity.
PLoS One. 2020;15:e0242384.
PubMed Abstract available

DOAN TH, Yen-Nicolay S, Bernet-Camard MF, Martin-Verstraete I, et al
Impact of subinhibitory concentrations of metronidazole on proteome of Clostridioides difficile strains with different levels of susceptibility.
PLoS One. 2020;15:e0241903.
PubMed Abstract available

HIPFNER JM, Prill MM, Studholme KR, Domalik AD, et al
Geolocator tagging links distributions in the non-breeding season to population genetic structure in a sentinel North Pacific seabird.
PLoS One. 2020;15:e0240056.
PubMed Abstract available

DE SOUSA-D'AURIA C, Constantinesco-Becker F, Constant P, Tropis M, et al
Genome-wide identification of novel genes involved in Corynebacteriales cell envelope biogenesis using Corynebacterium glutamicum as a model.
PLoS One. 2020;15:e0240497.
PubMed Abstract available

SCHULZ C, Almaas E
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.
PLoS One. 2020;15:e0240953.
PubMed Abstract available

ARNADOTTIR SS, Mattesen TB, Vang S, Madsen MR, et al
Transcriptomic and proteomic intra-tumor heterogeneity of colorectal cancer varies depending on tumor location within the colorectum.
PLoS One. 2020;15:e0241148.
PubMed Abstract available

THORSON JLM, Beck D, Ben Maamar M, Nilsson EE, et al
Epigenome-wide association study for atrazine induced transgenerational DNA methylation and histone retention sperm epigenetic biomarkers for disease.
PLoS One. 2020;15:e0239380.
PubMed Abstract available

YAMAMOTO H, Uchida Y, Chiba T, Kurimoto R, et al
Transcriptome analysis of sevoflurane exposure effects at the different brain regions.
PLoS One. 2020;15:e0236771.
PubMed Abstract available

SHI Y, Gong W, Gong X, Wang P, et al
Genome-wide DNA methylation analysis of breast cancer MCF-7 / Taxol cells with MeDIP-Seq.
PLoS One. 2020;15:e0241515.
PubMed Abstract available

HART RK, Prlic A
SeqRepo: A system for managing local collections of biological sequences.
PLoS One. 2020;15:e0239883.
PubMed Abstract available

MIN K, Yi G, Lee JG, Kim HS, et al
Comparative transcriptome and metabolome analyses of two strawberry cultivars with different storability.
PLoS One. 2020;15:e0242556.
PubMed Abstract available

LEE HJ, Chung YJ, Jang S, Seo DW, et al
Genome-wide identification of major genes and genomic prediction using high-density and text-mined gene-based SNP panels in Hanwoo (Korean cattle).
PLoS One. 2020;15:e0241848.
PubMed Abstract available

KIM JH, Park JS, Lee CY, Jeong MG, et al
Dissecting seed pigmentation-associated genomic loci and genes by employing dual approaches of reference-based and k-mer-based GWAS with 438 Glycine accessions.
PLoS One. 2020;15:e0243085.
PubMed Abstract available

KRUTZFELDT LM, Schubach M, Kircher M
The impact of different negative training data on regulatory sequence predictions.
PLoS One. 2020;15:e0237412.
PubMed Abstract available

REILLY J, Gallagher L, Leader G, Shen S, et al
Coupling of autism genes to tissue-wide expression and dysfunction of synapse, calcium signalling and transcriptional regulation.
PLoS One. 2020;15:e0242773.
PubMed Abstract available

DE LOS CAMPOS G, Pook T, Gonzalez-Reymundez A, Simianer H, et al
ANOVA-HD: Analysis of variance when both input and output layers are high-dimensional.
PLoS One. 2020;15:e0243251.
PubMed Abstract available

MARTINEZ BARRERA S, Byrum S, Mackintosh SG, Kozubowski L, et al
Registered report protocol: Quantitative analysis of septin Cdc10-associated proteome in Cryptococcus neoformans.
PLoS One. 2020;15:e0242381.
PubMed Abstract available

DUMAIDI K, Qaraqe H, Al-Jawabreh A, Abu-Helu R, et al
Genetic diversity, haplotype analysis, and risk factor assessment of hepatitis A virus isolates from the West Bank, Palestine during the period between 2014 and 2016.
PLoS One. 2020;15:e0240339.
PubMed Abstract available

WONFOR RE, Creevey CJ, Natoli M, Hegarty M, et al
Interaction of preimplantation factor with the global bovine endometrial transcriptome.
PLoS One. 2020;15:e0242874.
PubMed Abstract available

LI H, Liang X, Zhou B, Chen X, et al
A proteomic analysis of peanut seed at different stages of underground development to understand the changes of seed proteins.
PLoS One. 2020;15:e0243132.
PubMed Abstract available

WRIGGLESWORTH DJ, Goonatilleke E, Haydock R, Hughes KR, et al
High-throughput glycomic analyses reveal unique oligosaccharide profiles of canine and feline milk samples.
PLoS One. 2020;15:e0243323.
PubMed Abstract available

EKMAN L, Bagge E, Nyman A, Persson Waller K, et al
A shotgun metagenomic investigation of the microbiota of udder cleft dermatitis in comparison to healthy skin in dairy cows.
PLoS One. 2020;15:e0242880.
PubMed Abstract available

YU G, Zhao W, Shen Y, Zhu P, et al
Metagenomic next generation sequencing for the diagnosis of tuberculosis meningitis: A systematic review and meta-analysis.
PLoS One. 2020;15:e0243161.
PubMed Abstract available

LI Q, Ma C, Tai H, Qiu H, et al
Comparative transcriptome analysis of two rice genotypes differing in their tolerance to saline-alkaline stress.
PLoS One. 2020;15:e0243112.
PubMed Abstract available

NIRAULA PM, Sharma K, McNeece BT, Troell HA, et al
Mitogen activated protein kinase (MAPK)-regulated genes with predicted signal peptides function in the Glycine max defense response to the root pathogenic nematode Heterodera glycines.
PLoS One. 2020;15:e0241678.
PubMed Abstract available

WU Z, Hai E, Di Z, Ma R, et al
Using WGCNA (weighted gene co-expression network analysis) to identify the hub genes of skin hair follicle development in fetus stage of Inner Mongolia cashmere goat.
PLoS One. 2020;15:e0243507.
PubMed Abstract available

DE LEMOS APS, Sacchi CT, Goncalves CR, Camargo CH, et al
Genomic surveillance of Neisseria meningitidis serogroup B invasive strains: Diversity of vaccine antigen types, Brazil, 2016-2018.
PLoS One. 2020;15:e0243375.
PubMed Abstract available

YE J, Li J
First proteomic analysis of the role of lysine acetylation in extensive functions in Solenopsis invicta.
PLoS One. 2020;15:e0243787.
PubMed Abstract available

MILLS C, Muruganujan A, Ebert D, Marconett CN, et al
PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence.
PLoS One. 2020;15:e0243791.
PubMed Abstract available

LENZ M, Schulz A, Koeck T, Rapp S, et al
Missing value imputation in proximity extension assay-based targeted proteomics data.
PLoS One. 2020;15:e0243487.
PubMed Abstract available

LUCIDARME J, Zhu B, Xu L, Bai X, et al
Genomic analysis of the meningococcal ST-4821 complex-Western clade, potential sexual transmission and predicted antibiotic susceptibility and vaccine coverage.
PLoS One. 2020;15:e0243426.
PubMed Abstract available

MAO Y, Zhao Y, Zhang Y, Yang H, et al
In-depth characterization and comparison of the N-glycosylated proteome of two-dimensional- and three-dimensional-cultured breast cancer cells and xenografted tumors.
PLoS One. 2020;15:e0243789.
PubMed Abstract available

ZANDONADI FS, Ferreira SP, Alexandrino AV, Carnielli CM, et al
Periplasm-enriched fractions from Xanthomonas citri subsp. citri type A and X. fuscans subsp. aurantifolii type B present distinct proteomic profiles under in vitro pathogenicity induction.
PLoS One. 2020;15:e0243867.
PubMed Abstract available

FOPA FOMEJU B, Brunel D, Berard A, Rivoal JB, et al
Quick and efficient approach to develop genomic resources in orphan species: Application in Lavandula angustifolia.
PLoS One. 2020;15:e0243853.
PubMed Abstract available

JITTIKOON J, Sangroongruangsri S, Thavorncharoensap M, Chitpim N, et al
Economic impact of medical genetic testing on clinical applications in Thailand.
PLoS One. 2020;15:e0243934.
PubMed Abstract available

BREIDENBACH N, Gailing O, Krutovsky KV
Genetic structure of coast redwood (Sequoia sempervirens [D. Don] Endl.) populations in and outside of the natural distribution range based on nuclear and chloroplast microsatellite markers.
PLoS One. 2020;15:e0243556.
PubMed Abstract available

LARSSON M, Rudqvist N, Spetz J, Shubbar E, et al
Long-term transcriptomic and proteomic effects in Sprague Dawley rat thyroid and plasma after internal low dose 131I exposure.
PLoS One. 2020;15:e0244098.
PubMed Abstract available

MENIKOU S, McArdle AJ, Li MS, Kaforou M, et al
A proteomics-based method for identifying antigens within immune complexes.
PLoS One. 2020;15:e0244157.
PubMed Abstract available

VIANA MVC, Profeta R, da Silva AL, Hurtado R, et al
Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum.
PLoS One. 2020;15:e0244210.
PubMed Abstract available

GUEVARA EK, Palo JU, Oversti S, King JL, et al
Genetic assessment reveals no population substructure and divergent regional and sex-specific histories in the Chachapoyas from northeast Peru.
PLoS One. 2020;15:e0244497.
PubMed Abstract available

WANG J, Ran LL, Li Y, Liu YH, et al
Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae).
PLoS One. 2020;15:e0244493.
PubMed Abstract available

LASO-JADART R, Ambroise C, Peterlongo P, Madoui MA, et al
metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics.
PLoS One. 2020;15:e0244637.
PubMed Abstract available

VON MAYDELL D, Lehnert H, Berner T, Klocke E, et al
On genetic diversity in caraway: Genotyping of a large germplasm collection.
PLoS One. 2020;15:e0244666.
PubMed Abstract available

HULL JJA, Qi M, Montmayeur AM, Kumar D, et al
Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States.
PLoS One. 2020;15:e0244498.
PubMed Abstract available

VILLATORO AJ, Alcoholado C, Martin-Astorga MDC, Rico G, et al
Characterization of the secretory profile and exosomes of limbal stem cells in the canine species.
PLoS One. 2020;15:e0244327.
PubMed Abstract available

OYAMA Y, Shuff S, Davizon-Castillo P, Clendenen N, et al
Intense light as anticoagulant therapy in humans.
PLoS One. 2020;15:e0244792.
PubMed Abstract available

January 2019

ZYBAILOV BL, Glazko GV, Rahmatallah Y, Andreyev DS, et al
Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in rats.
PLoS One. 2019;14:e0199274.
PubMed Abstract available

PATEL BB, Lebensohn AM, Pusapati GV, Carette JE, et al
Discovery of gene regulatory elements through a new bioinformatics analysis of haploid genetic screens.
PLoS One. 2019;14:e0198463.
PubMed Abstract available

LAUZI J, Anders F, Liu H, Pfeiffer N, et al
Neuroprotective and neuroregenerative effects of CRMP-5 on retinal ganglion cells in an experimental in vivo and in vitro model of glaucoma.
PLoS One. 2019;14:e0207190.
PubMed Abstract available

MOHAMED N, Timofeyeva Y, Jamrozy D, Rojas E, et al
Molecular epidemiology and expression of capsular polysaccharides in Staphylococcus aureus clinical isolates in the United States.
PLoS One. 2019;14:e0208356.
PubMed Abstract available

HAGEL S, Makarewicz O, Hartung A, Weiss D, et al
ESBL colonization and acquisition in a hospital population: The molecular epidemiology and transmission of resistance genes.
PLoS One. 2019;14:e0208505.
PubMed Abstract available

LAFFRANCHI M, Elliston ELK, Gangemi F, Berardelli R, et al
Characterisation of a type II functionally-deficient variant of alpha-1-antitrypsin discovered in the general population.
PLoS One. 2019;14:e0206955.
PubMed Abstract available

SILLIVAN SE, Jones ME, Jamieson S, Rumbaugh G, et al
Bioinformatic analysis of long-lasting transcriptional and translational changes in the basolateral amygdala following acute stress.
PLoS One. 2019;14:e0209846.
PubMed Abstract available

KHAN A, Asaf S, Khan AL, Al-Harrasi A, et al
First complete chloroplast genomics and comparative phylogenetic analysis of Commiphora gileadensis and C. foliacea: Myrrh producing trees.
PLoS One. 2019;14:e0208511.
PubMed Abstract available

FERREIRA JE, Ferreira SC, Almeida-Neto C, Nishiya AS, et al
Molecular characterization of viruses associated with encephalitis in Sao Paulo, Brazil.
PLoS One. 2019;14:e0209993.
PubMed Abstract available

ARHOUNE B, Oumokhtar B, Hmami F, El Fakir S, et al
Intestinal carriage of antibiotic resistant Acinetobacter baumannii among newborns hospitalized in Moroccan neonatal intensive care unit.
PLoS One. 2019;14:e0209425.
PubMed Abstract available

MA L, Yang Y, Zhao X, Wang F, et al
Heat stress induces proteomic changes in the liver and mammary tissue of dairy cows independent of feed intake: An iTRAQ study.
PLoS One. 2019;14:e0209182.
PubMed Abstract available

VOGLER AJ, Sahl JW, Leal NC, Sobreira M, et al
A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic.
PLoS One. 2019;14:e0209478.
PubMed Abstract available

SHAO B, Bjaanaes MM, Helland A, Schutte C, et al
EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma.
PLoS One. 2019;14:e0204186.
PubMed Abstract available

DARWISH HYA, Dalirsefat SB, Dong X, Hua G, et al
Genome-wide association study and a post replication analysis revealed a promising genomic region and candidate genes for chicken eggshell blueness.
PLoS One. 2019;14:e0209181.
PubMed Abstract available

HSU WH, Shen YC, Shiao YJ, Kuo CH, et al
Combined proteomic and metabolomic analyses of cerebrospinal fluid from mice with ischemic stroke reveals the effects of a Buyang Huanwu decoction in neurodegenerative disease.
PLoS One. 2019;14:e0209184.
PubMed Abstract available

MAYDAY MY, Khan LM, Chow ED, Zinter MS, et al
Miniaturization and optimization of 384-well compatible RNA sequencing library preparation.
PLoS One. 2019;14:e0206194.
PubMed Abstract available

THORNBURY M, Sicheri J, Slaine P, Getz LJ, et al
Characterization of novel lignocellulose-degrading enzymes from the porcupine microbiome using synthetic metagenomics.
PLoS One. 2019;14:e0209221.
PubMed Abstract available

LEYNAUD-KIEFFER LMC, Curran SC, Kim I, Magnuson JK, et al
A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable.
PLoS One. 2019;14:e0210243.
PubMed Abstract available

GUERRERO-SANCHEZ VM, Maldonado-Alconada AM, Amil-Ruiz F, Verardi A, et al
Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome.
PLoS One. 2019;14:e0210356.
PubMed Abstract available

TASKOVA K, Fontaine JF, Mrowka R, Andrade-Navarro MA, et al
Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets.
PLoS One. 2019;14:e0210467.
PubMed Abstract available

CADEZ N, Bellora N, Ulloa R, Hittinger CT, et al
Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina.
PLoS One. 2019;14:e0210792.
PubMed Abstract available

GURGUL A, Jasielczuk I, Semik-Gurgul E, Pawlina-Tyszko K, et al
A genome-wide scan for diversifying selection signatures in selected horse breeds.
PLoS One. 2019;14:e0210751.
PubMed Abstract available

BUDINSKI I, Blagojevic J, Jovanovic VM, Pejic B, et al
Population genetic structure of the Mediterranean horseshoe bat Rhinolophus euryale in the central Balkans.
PLoS One. 2019;14:e0210321.
PubMed Abstract available

VALENCA-BARBOSA C, do Bomfim TCB, Teixeira BR, Gentile R, et al
Molecular epidemiology of Blastocystis isolated from animals in the state of Rio de Janeiro, Brazil.
PLoS One. 2019;14:e0210740.
PubMed Abstract available

YAO S, Tuo T, Gao X, Han C, et al
Molecular epidemiology of chicken anaemia virus in sick chickens in China from 2014 to 2015.
PLoS One. 2019;14:e0210696.
PubMed Abstract available

PANG YY, Zhang C, Xu MJ, Huang GY, et al
The transcriptome sequencing and functional analysis of eyestalk ganglions in Chinese mitten crab (Eriocheir sinensis) treated with different photoperiods.
PLoS One. 2019;14:e0210414.
PubMed Abstract available

HJELMSO MH, Mollerup S, Jensen RH, Pietroni C, et al
Metagenomic analysis of viruses in toilet waste from long distance flights-A new procedure for global infectious disease surveillance.
PLoS One. 2019;14:e0210368.
PubMed Abstract available

GAMBOA M, Muranyi D, Kanmori S, Watanabe K, et al
Molecular phylogeny and diversification timing of the Nemouridae family (Insecta, Plecoptera) in the Japanese Archipelago.
PLoS One. 2019;14:e0210269.
PubMed Abstract available

HTWE KTZ, Dapat C, Shobugawa Y, Odagiri T, et al
Phylogeographic analysis of human influenza A and B viruses in Myanmar, 2010-2015.
PLoS One. 2019;14:e0210550.
PubMed Abstract available

XU C, Huang Q, Ge X, Li Z, et al
Phenotypic, cytogenetic, and molecular marker analysis of Brassica napus introgressants derived from an intergeneric hybridization with Orychophragmus.
PLoS One. 2019;14:e0210518.
PubMed Abstract available

WIROJSIRASAK W, Kalapanulak S, Saithong T
Pan- and core- gene association networks: Integrative approaches to understanding biological regulation.
PLoS One. 2019;14:e0210481.
PubMed Abstract available

QUEIROS J, Acevedo P, Santos JPV, Barasona J, et al
Red deer in Iberia: Molecular ecological studies in a southern refugium and inferences on European postglacial colonization history.
PLoS One. 2019;14:e0210282.
PubMed Abstract available

RAKOVIC M, Neto JM, Lopes RJ, Koblik EA, et al
Geographic patterns of mtDNA and Z-linked sequence variation in the Common Chiffchaff and the 'chiffchaff complex'.
PLoS One. 2019;14:e0210268.
PubMed Abstract available

WANG X, Miao J, Chang T, Xia J, et al
Evaluation of GBLUP, BayesB and elastic net for genomic prediction in Chinese Simmental beef cattle.
PLoS One. 2019;14:e0210442.
PubMed Abstract available

VIGALONDO B, Patino J, Draper I, Mazimpaka V, et al
The long journey of Orthotrichum shevockii (Orthotrichaceae, Bryopsida): From California to Macaronesia.
PLoS One. 2019;14:e0211017.
PubMed Abstract available

MASSON T, Fabre ML, Ferrelli ML, Pidre ML, et al
Protein composition of the occlusion bodies of Epinotia aporema granulovirus.
PLoS One. 2019;14:e0207735.
PubMed Abstract available

RICCIOTTI E, Sarantopoulou D, Grant GR, Sanzari JK, et al
Distinct vascular genomic response of proton and gamma radiation-A pilot investigation.
PLoS One. 2019;14:e0207503.
PubMed Abstract available

XI Y, Wang F
Extreme pathway analysis reveals the organizing rules of metabolic regulation.
PLoS One. 2019;14:e0210539.
PubMed Abstract available

SUBRAMANIAM S, Muller VS, Hering NA, Mollenkopf H, et al
Contribution of the Cpx envelope stress system to metabolism and virulence regulation in Salmonella enterica serovar Typhimurium.
PLoS One. 2019;14:e0211584.
PubMed Abstract available

KOEPPEN K, Barnaby R, Jackson AA, Gerber SA, et al
Tobramycin reduces key virulence determinants in the proteome of Pseudomonas aeruginosa outer membrane vesicles.
PLoS One. 2019;14:e0211290.
PubMed Abstract available

TAKAHASHI Y, Konishi T, Yamaki K
Tofu and fish oil independently modulate serum lipid profiles in rats: Analyses of 10 class lipoprotein profiles and the global hepatic transcriptome.
PLoS One. 2019;14:e0210950.
PubMed Abstract available

KECHAVARZI BD, Wu H, Doman TN
Bottom-up, integrated -omics analysis identifies broadly dosage-sensitive genes in breast cancer samples from TCGA.
PLoS One. 2019;14:e0210910.
PubMed Abstract available

STEWART JAE, Butterfield HS, Richmond JQ, Germano DJ, et al
Habitat restoration opportunities, climatic niche contraction, and conservation biogeography in California's San Joaquin Desert.
PLoS One. 2019;14:e0210766.
PubMed Abstract available

CAO Y, Meng D, Chen T, Chen Y, et al
Metacaspase gene family in Rosaceae genomes: Comparative genomic analysis and their expression during pear pollen tube and fruit development.
PLoS One. 2019;14:e0211635.
PubMed Abstract available

ADESOKAN HK, Streicher EM, van Helden PD, Warren RM, et al
Genetic diversity of Mycobacterium tuberculosis complex strains isolated from livestock workers and cattle in Nigeria.
PLoS One. 2019;14:e0211637.
PubMed Abstract available

AKHWALE JK, Rohde M, Rohde C, Bunk B, et al
Comparative genomic analysis of eight novel haloalkaliphilic bacteriophages from Lake Elmenteita, Kenya.
PLoS One. 2019;14:e0212102.
PubMed Abstract available

HEINE V, Meinert-Berning C, Luck J, Mikowsky N, et al
The catabolism of 3,3'-thiodipropionic acid in Variovorax paradoxus strain TBEA6: A proteomic analysis.
PLoS One. 2019;14:e0211876.
PubMed Abstract available

LOKMER A, Cian A, Froment A, Gantois N, et al
Use of shotgun metagenomics for the identification of protozoa in the gut microbiota of healthy individuals from worldwide populations with various industrialization levels.
PLoS One. 2019;14:e0211139.
PubMed Abstract available

WEILAND-BRAUER N, Malek I, Schmitz RA
Metagenomic quorum quenching enzymes affect biofilm formation of Candida albicans and Staphylococcus epidermidis.
PLoS One. 2019;14:e0211366.
PubMed Abstract available

JOAQUIM LB, Chud TCS, Marchesi JAP, Savegnago RP, et al
Genomic structure of a crossbred Landrace pig population.
PLoS One. 2019;14:e0212266.
PubMed Abstract available

SISSUNG TM, Rajan A, Blumenthal GM, Liewehr DJ, et al
Reproducibility of pharmacogenetics findings for paclitaxel in a heterogeneous population of patients with lung cancer.
PLoS One. 2019;14:e0212097.
PubMed Abstract available

ALI F, Yilmaz A, Nadeem MA, Habyarimana E, et al
Mobile genomic element diversity in world collection of safflower (Carthamus tinctorius L.) panel using iPBS-retrotransposon markers.
PLoS One. 2019;14:e0211985.
PubMed Abstract available

DECORTE R, Polet C, Boudin M, Tilquin F, et al
An interdisciplinary study around the reliquary of the late cardinal Jacques de Vitry.
PLoS One. 2019;14:e0201424.
PubMed Abstract available

MANGIN B, Rincent R, Rabier CE, Moreau L, et al
Training set optimization of genomic prediction by means of EthAcc.
PLoS One. 2019;14:e0205629.
PubMed Abstract available

POLLOCK RA, Zaman L, Chandran V, Gladman DD, et al
Epigenome-wide analysis of sperm cells identifies IL22 as a possible germ line risk locus for psoriatic arthritis.
PLoS One. 2019;14:e0212043.
PubMed Abstract available

HERNANDEZ M, Martin MV, Herrador-Gomez PM, Jimenez S, et al
Mitocondrial COI and 16S rDNA sequences support morphological identification and biogeography of deep-sea red crabs of the genus Chaceon (Crustacea, Decapoda, Geryonidae) in the Eastern Central and South Atlantic Ocean.
PLoS One. 2019;14:e0211717.
PubMed Abstract available

ZHAO Y, Pan B, Zhang M
Phylogeography and conservation genetics of the endangered Tugarinovia mongolica (Asteraceae) from Inner Mongolia, Northwest China.
PLoS One. 2019;14:e0211696.
PubMed Abstract available

BERGERON MJ, Feau N, Stewart D, Tanguay P, et al
Genome-enhanced detection and identification of fungal pathogens responsible for pine and poplar rust diseases.
PLoS One. 2019;14:e0210952.
PubMed Abstract available

KIM B, Lee H, Jang J, Kim SJ, et al
Targeted next generation sequencing can serve as an alternative to conventional tests in myeloid neoplasms.
PLoS One. 2019;14:e0212228.
PubMed Abstract available

OTCHERE ID, van Tonder AJ, Asante-Poku A, Sanchez-Buso L, et al
Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana.
PLoS One. 2019;14:e0209395.
PubMed Abstract available

SAITO K, Koido S, Odamaki T, Kajihara M, et al
Metagenomic analyses of the gut microbiota associated with colorectal adenoma.
PLoS One. 2019;14:e0212406.
PubMed Abstract available

VILLAR COUTO CM, Cumming GS, Lacorte GA, Congrains C, et al
Avian haemosporidians in the cattle egret (Bubulcus ibis) from central-western and southern Africa: High diversity and prevalence.
PLoS One. 2019;14:e0212425.
PubMed Abstract available

MACAULAY V, Soares P, Richards MB
Rectifying long-standing misconceptions about the rho statistic for molecular dating.
PLoS One. 2019;14:e0212311.
PubMed Abstract available

BEGIC E, Hadzidedic S, Kulaglic A, Ramic-Brkic B, et al
SOMAscan-based proteomic measurements of plasma brain natriuretic peptide are decreased in mild cognitive impairment and in Alzheimer's dementia patients.
PLoS One. 2019;14:e0212261.
PubMed Abstract available

ACCIOLY T, Sousa JO, Moreau PA, Lecuru C, et al
Hidden fungal diversity from the Neotropics: Geastrum hirsutum, G. schweinitzii (Basidiomycota, Geastrales) and their allies.
PLoS One. 2019;14:e0211388.
PubMed Abstract available

CONROY GC, Shimizu-Kimura Y, Lamont RW, Ogbourne SM, et al
A multidisciplinary approach to inform assisted migration of the restricted rainforest tree, Fontainea rostrata.
PLoS One. 2019;14:e0210560.
PubMed Abstract available

SANT' ANNA IC, Cabral Ferreira RAD, Nascimento M, Silva GN, et al
Multigenerational prediction of genetic values using genome-enabled prediction.
PLoS One. 2019;14:e0210531.
PubMed Abstract available

PLATTEN JD, Cobb JN, Zantua RE
Criteria for evaluating molecular markers: Comprehensive quality metrics to improve marker-assisted selection.
PLoS One. 2019;14:e0210529.
PubMed Abstract available

MARTIN-GALIANO AJ, Lopez D
Computational characterization of the peptidome in transporter associated with antigen processing (TAP)-deficient cells.
PLoS One. 2019;14:e0210583.
PubMed Abstract available

RODRIQUES SG, Marblestone AH, Boyden ES
A theoretical analysis of single molecule protein sequencing via weak binding spectra.
PLoS One. 2019;14:e0212868.
PubMed Abstract available

RUPJI M, Dwivedi B, Kowalski J
NOJAH: NOt Just Another Heatmap for genome-wide cluster analysis.
PLoS One. 2019;14:e0204542.
PubMed Abstract available

FREGEL R, Ordonez AC, Santana-Cabrera J, Cabrera VM, et al
Mitogenomes illuminate the origin and migration patterns of the indigenous people of the Canary Islands.
PLoS One. 2019;14:e0209125.
PubMed Abstract available

URQUIA D, Gutierrez B, Pozo G, Pozo MJ, et al
Psidium guajava in the Galapagos Islands: Population genetics and history of an invasive species.
PLoS One. 2019;14:e0203737.
PubMed Abstract available

VELTMAN MA, Flowers JM, van Andel TR, Schranz ME, et al
Origins and geographic diversification of African rice (Oryza glaberrima).
PLoS One. 2019;14:e0203508.
PubMed Abstract available

ZHANG LJ, Yang L, Gu XX, Chen PX, et al
The first isolation of Clostridium difficile RT078/ST11 from pigs in China.
PLoS One. 2019;14:e0212965.
PubMed Abstract available

KIM JJ, Savas JN, Miller MT, Hu X, et al
Proteomic analyses reveal misregulation of LIN28 expression and delayed timing of glial differentiation in human iPS cells with MECP2 loss-of-function.
PLoS One. 2019;14:e0212553.
PubMed Abstract available

ROE WD, Lenting B, Kokosinska A, Hunter S, et al
Pathology and molecular epidemiology of Mycobacterium pinnipedii tuberculosis in native New Zealand marine mammals.
PLoS One. 2019;14:e0212363.
PubMed Abstract available

XU T, Gu L, Yu H, Jiang X, et al
Analysis of Anasplatyrhynchos genome resequencing data reveals genetic signatures of artificial selection.
PLoS One. 2019;14:e0211908.
PubMed Abstract available

ROEHRER S, Stork V, Ludwig C, Minceva M, et al
Analyzing bioactive effects of the minor hop compound xanthohumol C on human breast cancer cells using quantitative proteomics.
PLoS One. 2019;14:e0213469.
PubMed Abstract available

TESCHIMA MM, Garrido A, Paris A, Nunes FLD, et al
Biogeography of the endosymbiotic dinoflagellates (Symbiodiniaceae) community associated with the brooding coral Favia gravida in the Atlantic Ocean.
PLoS One. 2019;14:e0213519.
PubMed Abstract available

UJIIE Y, Kimoto K, Ishimura T
Advanced approach to analyzing calcareous protists for present and past pelagic ecology: Comprehensive analysis of 3D-morphology, stable isotopes, and genes of planktic foraminifers.
PLoS One. 2019;14:e0213282.
PubMed Abstract available

PLATE M, Bernstein R, Hoppe A, Bienefeld K, et al
Comparison of infinitesimal and finite locus models for long-term breeding simulations with direct and maternal effects at the example of honeybees.
PLoS One. 2019;14:e0213270.
PubMed Abstract available

SUNG MH, Lin CN, Chiou MT, Cheng IJ, et al
Phylogeographic investigation of 2014 porcine epidemic diarrhea virus (PEDV) transmission in Taiwan.
PLoS One. 2019;14:e0213153.
PubMed Abstract available

QIU Y, Wang S, Huang B, Zhong H, et al
Viral infection detection using metagenomics technology in six poultry farms of eastern China.
PLoS One. 2019;14:e0211553.
PubMed Abstract available

CHEN Y, Vu J, Thompson MG, Sharpless WA, et al
A rapid methods development workflow for high-throughput quantitative proteomic applications.
PLoS One. 2019;14:e0211582.
PubMed Abstract available

JAMES G, Reisberg S, Lepik K, Galwey N, et al
An exploratory phenome wide association study linking asthma and liver disease genetic variants to electronic health records from the Estonian Biobank.
PLoS One. 2019;14:e0215026.
PubMed Abstract available

BUBIER JA, Sutphin GL, Reynolds TJ, Korstanje R, et al
Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species.
PLoS One. 2019;14:e0214523.
PubMed Abstract available

IQBAL N, Liu X, Yang T, Huang Z, et al
Genomic variants identified from whole-genome resequencing of indicine cattle breeds from Pakistan.
PLoS One. 2019;14:e0215065.
PubMed Abstract available

NAKATO GV, Fuentes Rojas JL, Verniere C, Blondin L, et al
A new Multi Locus Variable Number of Tandem Repeat Analysis Scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wilt on banana and enset.
PLoS One. 2019;14:e0215090.
PubMed Abstract available

AGUADO MT, Capa M, Lago-Barcia D, Gil J, et al
Species delimitation in Amblyosyllis (Annelida, Syllidae).
PLoS One. 2019;14:e0214211.
PubMed Abstract available

MISHRA N, Fagbo SF, Alagaili AN, Nitido A, et al
A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia.
PLoS One. 2019;14:e0214227.
PubMed Abstract available

KUPLIK Z, Novak L, Shenkar N
Proteomic profiling of ascidians as a tool for biomonitoring marine environments.
PLoS One. 2019;14:e0215005.
PubMed Abstract available

NGUYEN TPH, Patrick CJ, Parry LJ, Familari M, et al
Using proteomics to advance the search for potential biomarkers for preeclampsia: A systematic review and meta-analysis.
PLoS One. 2019;14:e0214671.
PubMed Abstract available

GUTHRIE JL, Marchand-Austin A, Cronin K, Lam K, et al
Universal genotyping reveals province-level differences in the molecular epidemiology of tuberculosis.
PLoS One. 2019;14:e0214870.
PubMed Abstract available

SIDHU JS, Ramakrishnan SM, Ali S, Bernardo A, et al
Assessing the genetic diversity and characterizing genomic regions conferring Tan Spot resistance in cultivated rye.
PLoS One. 2019;14:e0214519.
PubMed Abstract available

PICHITPUNPONG C, Thongkorn S, Kanlayaprasit S, Yuwattana W, et al
Phenotypic subgrouping and multi-omics analyses reveal reduced diazepam-binding inhibitor (DBI) protein levels in autism spectrum disorder with severe language impairment.
PLoS One. 2019;14:e0214198.
PubMed Abstract available

RAVNSBORG T, Svaneklink S, Andersen LLT, Larsen MR, et al
First-trimester proteomic profiling identifies novel predictors of gestational diabetes mellitus.
PLoS One. 2019;14:e0214457.
PubMed Abstract available

STEPIEN CA, Snyder MR, Elz AE
Invasion genetics of the silver carp Hypophthalmichthys molitrix across North America: Differentiation of fronts, introgression, and eDNA metabarcode detection.
PLoS One. 2019;14:e0203012.
PubMed Abstract available

MARESOVA J, Habel JC, Neve G, Sielezniew M, et al
Cross-continental phylogeography of two Holarctic Nymphalid butterflies, Boloria eunomia and Boloria selene.
PLoS One. 2019;14:e0214483.
PubMed Abstract available

UNO Y, Nishida C, Hata A, Ishishita S, et al
Molecular cytogenetic characterization of repetitive sequences comprising centromeric heterochromatin in three Anseriformes species.
PLoS One. 2019;14:e0214028.
PubMed Abstract available

BORRELL S, Trauner A, Brites D, Rigouts L, et al
Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development.
PLoS One. 2019;14:e0214088.
PubMed Abstract available

AKAIKE T, Shinjo S, Ohmori E, Kajimura I, et al
Transcriptional profiles in the chicken ductus arteriosus during hatching.
PLoS One. 2019;14:e0214139.
PubMed Abstract available

DUCRET A, James I, Wilson S, Feilke M, et al
Translation and evaluation of a pre-clinical 5-protein response prediction signature in a breast cancer phase Ib clinical trial.
PLoS One. 2019;14:e0213892.
PubMed Abstract available

CHEUNG S, Parrella A, Rosenwaks Z, Palermo GD, et al
Genetic and epigenetic profiling of the infertile male.
PLoS One. 2019;14:e0214275.
PubMed Abstract available

MORARD R, Vollmar NM, Greco M, Kucera M, et al
Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species.
PLoS One. 2019;14:e0213936.
PubMed Abstract available

NI G, Chen S, Yuan J, Cavezza SF, et al
Comparative proteomic study reveals the enhanced immune response with the blockade of interleukin 10 with anti-IL-10 and anti-IL-10 receptor antibodies in human U937 cells.
PLoS One. 2019;14:e0213813.
PubMed Abstract available

LI Z, Meng M, Li S, Deng B, et al
The transcriptome analysis of Protaetia brevitarsis Lewis larvae.
PLoS One. 2019;14:e0214001.
PubMed Abstract available

LIMA-REZENDE CA, Rocha AV, Junior AFC, Martins ES, et al
Late Pleistocene climatic changes promoted demographic expansion and population reconnection of a Neotropical savanna-adapted bird, Neothraupis fasciata (Aves: Thraupidae).
PLoS One. 2019;14:e0212876.
PubMed Abstract available

PORTILLO A, Palomar AM, de Toro M, Santibanez S, et al
Exploring the bacteriome in anthropophilic ticks: To investigate the vectors for diagnosis.
PLoS One. 2019;14:e0213384.
PubMed Abstract available

WONG SY, Hashim OH, Hayashi N
Development of high-performance two-dimensional gel electrophoresis for human hair shaft proteome.
PLoS One. 2019;14:e0213947.
PubMed Abstract available

KUMAR G, Langa J, Montes I, Conklin D, et al
A novel transcriptome-derived SNPs array for tench (Tinca tinca L.).
PLoS One. 2019;14:e0213992.
PubMed Abstract available

ZIATS CA, Grosvenor LP, Sarasua SM, Thurm AE, et al
Functional genomics analysis of Phelan-McDermid syndrome 22q13 region during human neurodevelopment.
PLoS One. 2019;14:e0213921.
PubMed Abstract available

KARIMI K, Sargolzaei M, Plastow GS, Wang Z, et al
Opportunities for genomic selection in American mink: A simulation study.
PLoS One. 2019;14:e0213873.
PubMed Abstract available

HOBBS J, Round JM, Allison MJ, Helbing CC, et al
Expansion of the known distribution of the coastal tailed frog, Ascaphus truei, in British Columbia, Canada, using robust eDNA detection methods.
PLoS One. 2019;14:e0213849.
PubMed Abstract available

JABBARI K, Wirtz J, Rauscher M, Wiehe T, et al
A common genomic code for chromatin architecture and recombination landscape.
PLoS One. 2019;14:e0213278.
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BAKRI M, Samuh M, Azzeh M
Molecular epidemiology survey and characterization of human influenza A viruses circulating among Palestinians in East Jerusalem and the West Bank in 2015.
PLoS One. 2019;14:e0213290.
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VILLANDRE L, Labbe A, Brenner B, Ibanescu RI, et al
Assessing the role of transmission chains in the spread of HIV-1 among men who have sex with men in Quebec, Canada.
PLoS One. 2019;14:e0213366.
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SANAA M, Pouillot R, Vega FG, Strain E, et al
GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization.
PLoS One. 2019;14:e0213039.
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MAZUMDAR R, Nobauer K, Hummel K, Hess M, et al
Molecular characterization of Histomonas meleagridis exoproteome with emphasis on protease secretion and parasite-bacteria interaction.
PLoS One. 2019;14:e0212429.
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PEDRUZZI G, Rouzine IM
Epistasis detectably alters correlations between genomic sites in a narrow parameter window.
PLoS One. 2019;14:e0214036.
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WALDRON R, McGowan J, Gordon N, McCarthy C, et al
Proteome and allergenome of the European house dust mite Dermatophagoides pteronyssinus.
PLoS One. 2019;14:e0216171.
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LOPEZ-ORTIZ C, Dutta SK, Natarajan P, Pena-Garcia Y, et al
Genome-wide identification and gene expression pattern of ABC transporter gene family in Capsicum spp.
PLoS One. 2019;14:e0215901.
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DE LA TORRE U, Henderson JD, Furtado KL, Pedroja M, et al
Utilizing the fecal microbiota to understand foal gut transitions from birth to weaning.
PLoS One. 2019;14:e0216211.
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LETSINGER AC, Granados JZ, Little SE, Lightfoot JT, et al
Alleles associated with physical activity levels are estimated to be older than anatomically modern humans.
PLoS One. 2019;14:e0216155.
PubMed Abstract available

KONG Y, Rastogi D, Seoighe C, Greally JM, et al
Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data.
PLoS One. 2019;14:e0215987.
PubMed Abstract available

LIU S, Zheng X, Pan J, Peng L, et al
RNA-sequencing analysis reveals betalains metabolism in the leaf of Amaranthus tricolor L.
PLoS One. 2019;14:e0216001.
PubMed Abstract available

COX K, McKeown N, Antonini G, Harvey D, et al
Phylogeographic structure and ecological niche modelling reveal signals of isolation and postglacial colonisation in the European stag beetle.
PLoS One. 2019;14:e0215860.
PubMed Abstract available

LEE WK, Kim SJ, Hou BK, Van Dover CL, et al
Population genetic differentiation of the hydrothermal vent crab Austinograea alayseae (Crustacea: Bythograeidae) in the Southwest Pacific Ocean.
PLoS One. 2019;14:e0215829.
PubMed Abstract available

TAREKEGN GM, Wouobeng P, Jaures KS, Mrode R, et al
Genome-wide diversity and demographic dynamics of Cameroon goats and their divergence from east African, north African, and Asian conspecifics.
PLoS One. 2019;14:e0214843.
PubMed Abstract available

SHARMA LK, Mukherjee T, Saren PC, Chandra K, et al
Identifying suitable habitat and corridors for Indian Grey Wolf (Canis lupus pallipes) in Chotta Nagpur Plateau and Lower Gangetic Planes: A species with differential management needs.
PLoS One. 2019;14:e0215019.
PubMed Abstract available

LI S, Cao Y, Li L, Zhang H, et al
Building the drug-GO function network to screen significant candidate drugs for myasthenia gravis.
PLoS One. 2019;14:e0214857.
PubMed Abstract available

TRACHSEL S, Dhliwayo T, Gonzalez Perez L, Mendoza Lugo JA, et al
Estimation of physiological genomic estimated breeding values (PGEBV) combining full hyperspectral and marker data across environments for grain yield under combined heat and drought stress in tropical maize (Zea mays L.).
PLoS One. 2019;14:e0212200.
PubMed Abstract available

GANOVA-RAEVA L, Dimitrova Z, Alexiev I, Punkova L, et al
HCV transmission in high-risk communities in Bulgaria.
PLoS One. 2019;14:e0212350.
PubMed Abstract available

TIMOFEEV V, Bahtejeva I, Mironova R, Titareva G, et al
Insights from Bacillus anthracis strains isolated from permafrost in the tundra zone of Russia.
PLoS One. 2019;14:e0209140.
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WAGNER ER, Myers KS, Riley NM, Coon JJ, et al
PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production.
PLoS One. 2019;14:e0212389.
PubMed Abstract available

SUGUIYAMA VF, Vasconcelos LAB, Rossi MM, Biondo C, et al
The population genetic structure approach adds new insights into the evolution of plant LTR retrotransposon lineages.
PLoS One. 2019;14:e0214542.
PubMed Abstract available

GRANT ET, Kyes RC, Kyes P, Trinh P, et al
Fecal microbiota dysbiosis in macaques and humans within a shared environment.
PLoS One. 2019;14:e0210679.
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VAN NIEUWENHOVE AHM, Ratsimbazafy HA, Kochzius M
Cryptic diversity and limited connectivity in octopuses: Recommendations for fisheries management.
PLoS One. 2019;14:e0214748.
PubMed Abstract available

DANTAS GPM, Oliveira LR, Santos AM, Flores MD, et al
Uncovering population structure in the Humboldt penguin (Spheniscus humboldti) along the Pacific coast at South America.
PLoS One. 2019;14:e0215293.
PubMed Abstract available

YE P, Li M, Liao W, Ge K, et al
Hypothalamic transcriptome analysis reveals the neuroendocrine mechanisms in controlling broodiness of Muscovy duck (Cairina moschata).
PLoS One. 2019;14:e0207050.
PubMed Abstract available

SAKURAI K, Shioda K, Eguchi A, Watanabe M, et al
DNA methylome of human neonatal umbilical cord: Enrichment of differentially methylated regions compared to umbilical cord blood DNA at transcription factor genes involved in body patterning and effects of maternal folate deficiency or children's sex.
PLoS One. 2019;14:e0214307.
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BHANDARI A, Bartholome J, Cao-Hamadoun TV, Kumari N, et al
Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice.
PLoS One. 2019;14:e0208871.
PubMed Abstract available

TVEITARAS MK, Selheim F, Sortland K, Reed RK, et al
Protein expression profiling of plasma and lungs at different stages of metastatic development in a human triple negative breast cancer xenograft model.
PLoS One. 2019;14:e0215909.
PubMed Abstract available

SCHMEDES SE, Patel D, Kelley J, Udhayakumar V, et al
Using the Plasmodium mitochondrial genome for classifying mixed-species infections and inferring the geographical origin of P. falciparum parasites imported to the U.S.
PLoS One. 2019;14:e0215754.
PubMed Abstract available

ZAKERI Z, Otte V, Sipman H, Malicek J, et al
Discovering cryptic species in the Aspiciliella intermutans complex (Megasporaceae, Ascomycota) - First results using gene concatenation and coalescent-based species tree approaches.
PLoS One. 2019;14:e0216675.
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MITRA S, Saha S
A multiobjective multi-view cluster ensemble technique: Application in patient subclassification.
PLoS One. 2019;14:e0216904.
PubMed Abstract available

PELLIZZARO M, Martins CM, Yamakawa AC, Ferraz DDC, et al
Molecular detection of Leptospira spp. in rats as early spatial predictor for human disease in an endemic urban area.
PLoS One. 2019;14:e0216830.
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VAN DAM TJP, Kennedy J, van der Lee R, de Vrieze E, et al
CiliaCarta: An integrated and validated compendium of ciliary genes.
PLoS One. 2019;14:e0216705.
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PATIL K, Yelamanchi S, Kumar M, Hinduja I, et al
Quantitative mass spectrometric analysis to unravel glycoproteomic signature of follicular fluid in women with polycystic ovary syndrome.
PLoS One. 2019;14:e0214742.
PubMed Abstract available

ROSE I, Yoshimizu MH, Bonilla DL, Fedorova N, et al
Phylogeography of Borrelia spirochetes in Ixodes pacificus and Ixodes spinipalpis ticks highlights differential acarological risk of tick-borne disease transmission in northern versus southern California.
PLoS One. 2019;14:e0214726.
PubMed Abstract available

NAKAMURA H, Fujii K, Gupta V, Hata H, et al
Identification of key modules and hub genes for small-cell lung carcinoma and large-cell neuroendocrine lung carcinoma by weighted gene co-expression network analysis of clinical tissue-proteomes.
PLoS One. 2019;14:e0217105.
PubMed Abstract available

HAUN CT, Vann CG, Osburn SC, Mumford PW, et al
Muscle fiber hypertrophy in response to 6 weeks of high-volume resistance training in trained young men is largely attributed to sarcoplasmic hypertrophy.
PLoS One. 2019;14:e0215267.
PubMed Abstract available

CURRY CJ, White PA, Derr JN
Genetic analysis of African lions (Panthera leo) in Zambia support movement across anthropogenic and geographical barriers.
PLoS One. 2019;14:e0217179.
PubMed Abstract available

BEDRI SK, Nilsson OB, Fink K, Manberg A, et al
Plasma protein profiling reveals candidate biomarkers for multiple sclerosis treatment.
PLoS One. 2019;14:e0217208.
PubMed Abstract available

ZACHARIOUDAKIS IM, Zervou FN, Shehadeh F, Mylonakis E, et al
Cost-effectiveness of molecular diagnostic assays for the therapy of severe sepsis and septic shock in the emergency department.
PLoS One. 2019;14:e0217508.
PubMed Abstract available

CLUCAS GV, Kerr LA, Cadrin SX, Zemeckis DR, et al
Adaptive genetic variation underlies biocomplexity of Atlantic Cod in the Gulf of Maine and on Georges Bank.
PLoS One. 2019;14:e0216992.
PubMed Abstract available

CZARNOMSKA SD, Niedzialkowska M, Borowik T, Jedrzejewska B, et al
Winter temperature correlates with mtDNA genetic structure of yellow-necked mouse population in NE Poland.
PLoS One. 2019;14:e0216361.
PubMed Abstract available

MUDERSBACH T, Siuda D, Kohlstedt K, Fleming I, et al
Epigenetic control of the angiotensin-converting enzyme in endothelial cells during inflammation.
PLoS One. 2019;14:e0216218.
PubMed Abstract available

PAROLIN ML, Toscanini UF, Velazquez IF, Llull C, et al
Genetic admixture patterns in Argentinian Patagonia.
PLoS One. 2019;14:e0214830.
PubMed Abstract available

PEES M, Schmidt V, Papp T, Gellert A, et al
Three genetically distinct ferlaviruses have varying effects on infected corn snakes (Pantherophis guttatus).
PLoS One. 2019;14:e0217164.
PubMed Abstract available

ZHANG Q, Du Y
Model-free feature screening for categorical outcomes: Nonlinear effect detection and false discovery rate control.
PLoS One. 2019;14:e0217463.
PubMed Abstract available

BILLINGS E, Heipertz RA, Varleva T, Sanders-Buell E, et al
HIV-1 genetic diversity and demographic characteristics in Bulgaria.
PLoS One. 2019;14:e0217063.
PubMed Abstract available

CZECH L, Stamatakis A
Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples.
PLoS One. 2019;14:e0217050.
PubMed Abstract available

KAMALIDDIN C, Rombaut D, Guillochon E, Royo J, et al
From genomic to LC-MS/MS evidence: Analysis of PfEMP1 in Benin malaria cases.
PLoS One. 2019;14:e0218012.
PubMed Abstract available

YANG W, Yu M, Zou C, Lu C, et al
Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii.
PLoS One. 2019;14:e0218938.
PubMed Abstract available

NAVARRO QUIROZ E, Navarro Quiroz R, Pacheco Lugo L, Aroca Martinez G, et al
Integrated analysis of microRNA regulation and its interaction with mechanisms of epigenetic regulation in the etiology of systemic lupus erythematosus.
PLoS One. 2019;14:e0218116.
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HAMID R, Marashi H, Tomar RS, Malekzadeh Shafaroudi S, et al
Transcriptome analysis identified aberrant gene expression in pollen developmental pathways leading to CGMS in cotton (Gossypium hirsutum L.).
PLoS One. 2019;14:e0218381.
PubMed Abstract available

ZONG D, Gan P, Zhou A, Li J, et al
Comparative analysis of the complete chloroplast genomes of seven Populus species: Insights into alternative female parents of Populus tomentosa.
PLoS One. 2019;14:e0218455.
PubMed Abstract available

WREN CD, Burke A
Habitat suitability and the genetic structure of human populations during the Last Glacial Maximum (LGM) in Western Europe.
PLoS One. 2019;14:e0217996.
PubMed Abstract available

DAMANKA SA, Kwofie S, Dennis FE, Lartey BL, et al
Whole genome characterization and evolutionary analysis of OP354-like P[8] Rotavirus A strains isolated from Ghanaian children with diarrhoea.
PLoS One. 2019;14:e0218348.
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ROZENFELD C, Blanca J, Gallego V, Garcia-Carpintero V, et al
De novo European eel transcriptome provides insights into the evolutionary history of duplicated genes in teleost lineages.
PLoS One. 2019;14:e0218085.
PubMed Abstract available

VIDOTTI MS, Matias FI, Alves FC, Perez-Rodriguez P, et al
Maize responsiveness to Azospirillum brasilense: Insights into genetic control, heterosis and genomic prediction.
PLoS One. 2019;14:e0217571.
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HE M, Yao Y, Li Y, Yang M, et al
Comprehensive transcriptome analysis reveals genes potentially involved in isoflavone biosynthesis in Pueraria thomsonii Benth.
PLoS One. 2019;14:e0217593.
PubMed Abstract available

FREDRICH B, Schmohl M, Junge O, Gundlach S, et al
VarWatch-A stand-alone software tool for variant matching.
PLoS One. 2019;14:e0215618.
PubMed Abstract available

NEWTON R, Wernisch L
A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes.
PLoS One. 2019;14:e0213221.
PubMed Abstract available

FAMILARI M, Naav A, Erlandsson L, de Iongh RU, et al
Exposure of trophoblast cells to fine particulate matter air pollution leads to growth inhibition, inflammation and ER stress.
PLoS One. 2019;14:e0218799.
PubMed Abstract available

REDDY RB, Khora SS, Suresh A
Molecular prognosticators in clinically and pathologically distinct cohorts of head and neck squamous cell carcinoma-A meta-analysis approach.
PLoS One. 2019;14:e0218989.
PubMed Abstract available

ZHOU Z, Li K, Sun Y, Shi J, et al
Molecular epidemiology and risk factors of Anaplasma spp., Babesia spp. and Theileria spp. infection in cattle in Chongqing, China.
PLoS One. 2019;14:e0215585.
PubMed Abstract available

MCGIRR JA, Martin CH
Hybrid gene misregulation in multiple developing tissues within a recent adaptive radiation of Cyprinodon pupfishes.
PLoS One. 2019;14:e0218899.
PubMed Abstract available

ZIMMERMANN HH, Harms L, Epp LS, Mewes N, et al
Chloroplast and mitochondrial genetic variation of larches at the Siberian tundra-taiga ecotone revealed by de novo assembly.
PLoS One. 2019;14:e0216966.
PubMed Abstract available

AHMED AE, Heldenbrand J, Asmann Y, Fadlelmola FM, et al
Managing genomic variant calling workflows with Swift/T.
PLoS One. 2019;14:e0211608.
PubMed Abstract available

PETRETTO A, Bruschi M, Pratesi F, Croia C, et al
Neutrophil extracellular traps (NET) induced by different stimuli: A comparative proteomic analysis.
PLoS One. 2019;14:e0218946.
PubMed Abstract available

RATHINAM M, Mishra P, Vasudevan M, Budhwar R, et al
Comparative transcriptome analysis of pigeonpea, Cajanus cajan (L.) and one of its wild relatives Cajanus platycarpus (Benth.) Maesen.
PLoS One. 2019;14:e0218731.
PubMed Abstract available

HUA Z, Early MJ
Closing target trimming and CTTdocker programs for discovering hidden superfamily loci in genomes.
PLoS One. 2019;14:e0209468.
PubMed Abstract available

RONCALLO PF, Beaufort V, Larsen AO, Dreisigacker S, et al
Genetic diversity and linkage disequilibrium using SNP (KASP) and AFLP markers in a worldwide durum wheat (Triticum turgidum L. var durum) collection.
PLoS One. 2019;14:e0218562.
PubMed Abstract available

CRESPO-PIAZUELO D, Criado-Mesas L, Revilla M, Castello A, et al
Indel detection from Whole Genome Sequencing data and association with lipid metabolism in pigs.
PLoS One. 2019;14:e0218862.
PubMed Abstract available

HEISSEL S, Frederiksen SJ, Bunkenborg J, Hojrup P, et al
Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications.
PLoS One. 2019;14:e0218374.
PubMed Abstract available

MAY M, Beauchemin M, Vary C, Barlow D, et al
The antipsychotic medication, risperidone, causes global immunosuppression in healthy mice.
PLoS One. 2019;14:e0218937.
PubMed Abstract available

GAUCH HG JR, Qian S, Piepho HP, Zhou L, et al
Consequences of PCA graphs, SNP codings, and PCA variants for elucidating population structure.
PLoS One. 2019;14:e0218306.
PubMed Abstract available

NUNES QM, Su D, Brownridge PJ, Simpson DM, et al
The heparin-binding proteome in normal pancreas and murine experimental acute pancreatitis.
PLoS One. 2019;14:e0217633.
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TUMENDEMBEREL O, Zedrosser A, Proctor MF, Reynolds HV, et al
Phylogeography, genetic diversity, and connectivity of brown bear populations in Central Asia.
PLoS One. 2019;14:e0220746.
PubMed Abstract available

PALANIAPPAN M, Nguyen L, Grimm SL, Xi Y, et al
The genomic landscape of estrogen receptor alpha binding sites in mouse mammary gland.
PLoS One. 2019;14:e0220311.
PubMed Abstract available

KUO PJ, Rau CS, Wu SC, Lu TH, et al
Metagenomic analysis of the effects of toll-like receptors on bacterial infection in the peritoneal cavity following cecum ligation and puncture in mice.
PLoS One. 2019;14:e0220398.
PubMed Abstract available

PLATZER A, Nussbaumer T, Karonitsch T, Smolen JS, et al
Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns.
PLoS One. 2019;14:e0219698.
PubMed Abstract available

ALLEVA R, Tognu A, Tomasetti M, Benassi MS, et al
Effect of different anaesthetic techniques on gene expression profiles in patients who underwent hip arthroplasty.
PLoS One. 2019;14:e0219113.
PubMed Abstract available

ALDASORO M, Garin I, Vallejo N, Baroja U, et al
Gaining ecological insight on dietary allocation among horseshoe bats through molecular primer combination.
PLoS One. 2019;14:e0220081.
PubMed Abstract available

SHEAHAN T, Hakstol R, Kailasam S, Glaister GD, et al
Rapid metagenomics analysis of EMS vehicles for monitoring pathogen load using nanopore DNA sequencing.
PLoS One. 2019;14:e0219961.
PubMed Abstract available

LIND AP, Anderson PC
Predicting drug activity against cancer cells by random forest models based on minimal genomic information and chemical properties.
PLoS One. 2019;14:e0219774.
PubMed Abstract available

KRIZOVA P, Honskus M
Genomic surveillance of invasive meningococcal disease in the Czech Republic, 2015-2017.
PLoS One. 2019;14:e0219477.
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NARAYAN R, Olsson N, Wagar LE, Medeiros BC, et al
Acute myeloid leukemia immunopeptidome reveals HLA presentation of mutated nucleophosmin.
PLoS One. 2019;14:e0219547.
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RODY WJ JR, Chamberlain CA, Emory-Carter AK, McHugh KP, et al
The proteome of extracellular vesicles released by clastic cells differs based on their substrate.
PLoS One. 2019;14:e0219602.
PubMed Abstract available

WANG W, Cao L, Sun W, Xin J, et al
Sequence and phylogenetic analysis of novel porcine parvovirus 7 isolates from pigs in Guangxi, China.
PLoS One. 2019;14:e0219560.
PubMed Abstract available

ERLANDSON MA, Mori BA, Coutu C, Holowachuk J, et al
Examining population structure of a bertha armyworm, Mamestra configurata (Lepidoptera: Noctuidae), outbreak in western North America: Implications for gene flow and dispersal.
PLoS One. 2019;14:e0218993.
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DAMANKA SA, Agbemabiese CA, Dennis FE, Lartey BL, et al
Genetic analysis of Ghanaian G1P[8] and G9P[8] rotavirus A strains reveals the impact of P[8] VP4 gene polymorphism on P-genotyping.
PLoS One. 2019;14:e0218790.
PubMed Abstract available

MINE J, Uchida Y, Sharshov K, Sobolev I, et al
Phylogeographic evidence for the inter- and intracontinental dissemination of avian influenza viruses via migration flyways.
PLoS One. 2019;14:e0218506.
PubMed Abstract available

LYKE MM, Di Fiore A, Fierer N, Madden AA, et al
Metagenomic analyses reveal previously unrecognized variation in the diets of sympatric Old World monkey species.
PLoS One. 2019;14:e0218245.
PubMed Abstract available

TARCA AL, Romero R, Benshalom-Tirosh N, Than NG, et al
The prediction of early preeclampsia: Results from a longitudinal proteomics study.
PLoS One. 2019;14:e0217273.
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REN A, Du K, Jia X, Yang R, et al
Genetic diversity and population structure of four Chinese rabbit breeds.
PLoS One. 2019;14:e0222503.
PubMed Abstract available

KIM YH, Song Y, Kim JK, Kim TM, et al
False-negative errors in next-generation sequencing contribute substantially to inconsistency of mutation databases.
PLoS One. 2019;14:e0222535.
PubMed Abstract available

ALLEN KD, McKernan K, Pauli C, Roe J, et al
Genomic characterization of the complete terpene synthase gene family from Cannabis sativa.
PLoS One. 2019;14:e0222363.
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SCHEIFLER M, Ruiz-Rodriguez M, Sanchez-Brosseau S, Magnanou E, et al
Characterization of ecto- and endoparasite communities of wild Mediterranean teleosts by a metabarcoding approach.
PLoS One. 2019;14:e0221475.
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NOMOTO Y, Kubota Y, Ohnishi Y, Kasahara K, et al
Gene Cascade Finder: A tool for identification of gene cascades and its application in Caenorhabditis elegans.
PLoS One. 2019;14:e0215187.
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HUTCHISON JR, Brooks SM, Kennedy ZC, Pope TR, et al
Polysaccharide-based liquid storage and transport media for non-refrigerated preservation of bacterial pathogens.
PLoS One. 2019;14:e0221831.
PubMed Abstract available

PAULL ML, Johnston T, Ibsen KN, Bozekowski JD, et al
A general approach for predicting protein epitopes targeted by antibody repertoires using whole proteomes.
PLoS One. 2019;14:e0217668.
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TEKEDAR HC, Kumru S, Blom J, Perkins AD, et al
Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally.
PLoS One. 2019;14:e0221018.
PubMed Abstract available

LIU Y, Li L, Huang T, Wang R, et al
Comparative multi-omics systems analysis reveal the glycolysis / gluconeogenesis signal pathway play an important role in virulence attenuation in fish-derived GBS YM001.
PLoS One. 2019;14:e0221634.
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CALDERON-RODRIGUEZ SI, Sanabria-Salas MC, Umana-Perez A
A comparative proteomic study of plasma in Colombian childhood acute lymphoblastic leukemia.
PLoS One. 2019;14:e0221509.
PubMed Abstract available

CARBONE F, Bruno L, Perrotta G, Bitonti MB, et al
Identification of miRNAs involved in fruit ripening by deep sequencing of Olea europaea L. transcriptome.
PLoS One. 2019;14:e0221460.
PubMed Abstract available

CHEN X, Chen Z, Huang W, Fu H, et al
Proteomic analysis of gametophytic sex expression in the fern Ceratopteris thalictroides.
PLoS One. 2019;14:e0221470.
PubMed Abstract available

LAU BYC, Othman A
Evaluation of sodium deoxycholate as solubilization buffer for oil palm proteomics analysis.
PLoS One. 2019;14:e0221052.
PubMed Abstract available

GONZALEZ C, Gallagher AJ, Caballero S
Conservation genetics of the bonnethead shark Sphyrna tiburo in Bocas del Toro, Panama: Preliminary evidence of a unique stock.
PLoS One. 2019;14:e0220737.
PubMed Abstract available

HINDERER EW 3RD, Flight RM, Dubey R, MacLeod JN, et al
Advances in gene ontology utilization improve statistical power of annotation enrichment.
PLoS One. 2019;14:e0220728.
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AL-SNAN NR, Messaoudi S, R Babu S, Bakhiet M, et al
Population genetic data of the 21 autosomal STRs included in GlobalFiler kit of a population sample from the Kingdom of Bahrain.
PLoS One. 2019;14:e0220620.
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MULTINI LC, de Souza ALDS, Marrelli MT, Wilke ABB, et al
Population structuring of the invasive mosquito Aedes albopictus (Diptera: Culicidae) on a microgeographic scale.
PLoS One. 2019;14:e0220773.
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KUMTHIP K, Khamrin P, Ushijima H, Maneekarn N, et al
Enteric and non-enteric adenoviruses associated with acute gastroenteritis in pediatric patients in Thailand, 2011 to 2017.
PLoS One. 2019;14:e0220263.
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PANTANO E, Marchi S, Biagini M, Di Fede M, et al
NHBA is processed by kallikrein from human saliva.
PLoS One. 2019;14:e0203234.
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KOTZE A, Smith RM, Moodley Y, Luikart G, et al
Lessons for conservation management: Monitoring temporal changes in genetic diversity of Cape mountain zebra (Equus zebra zebra).
PLoS One. 2019;14:e0220331.
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IMRIE L, Le Bihan T, O'Toole A, Hickner PV, et al
Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics.
PLoS One. 2019;14:e0220225.
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MALHOTRA S, Alsulami AF, Heiyun Y, Ochoa BM, et al
Understanding the impacts of missense mutations on structures and functions of human cancer-related genes: A preliminary computational analysis of the COSMIC Cancer Gene Census.
PLoS One. 2019;14:e0219935.
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CHUNG SW, Yu DJ, Oh HD, Ahn JH, et al
Transcriptional regulation of abscisic acid biosynthesis and signal transduction, and anthocyanin biosynthesis in 'Bluecrop' highbush blueberry fruit during ripening.
PLoS One. 2019;14:e0220015.
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BOSE ME, Shrivastava S, He J, Nelson MI, et al
Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes.
PLoS One. 2019;14:e0220057.
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GAONA O, Gomez-Acata ES, Cerqueda-Garcia D, Neri-Barrios CX, et al
Fecal microbiota of different reproductive stages of the central population of the lesser-long nosed bat, Leptonycteris yerbabuenae.
PLoS One. 2019;14:e0219982.
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CHEN Y, Zhang B, Li C, Lei C, et al
A comprehensive expression analysis of the expansin gene family in potato (Solanum tuberosum) discloses stress-responsive expansin-like B genes for drought and heat tolerances.
PLoS One. 2019;14:e0219837.
PubMed Abstract available

BARRETO FZ, Rosa JRBF, Balsalobre TWA, Pastina MM, et al
A genome-wide association study identified loci for yield component traits in sugarcane (Saccharum spp.).
PLoS One. 2019;14:e0219843.
PubMed Abstract available

GARITA-CAMBRONERO J, Sena-Velez M, Ferragud E, Sabuquillo P, et al
Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants.
PLoS One. 2019;14:e0219797.
PubMed Abstract available

PLOYPETCH S, Roytrakul S, Jaresitthikunchai J, Phaonakrop N, et al
Salivary proteomics of canine oral tumors using MALDI-TOF mass spectrometry and LC-tandem mass spectrometry.
PLoS One. 2019;14:e0219390.
PubMed Abstract available

TAN Z, Dong W, Ding Y, Ding X, et al
Changes in cecal microbiota community of suckling piglets infected with porcine epidemic diarrhea virus.
PLoS One. 2019;14:e0219868.
PubMed Abstract available

RUFO R, Alvaro F, Royo C, Soriano JM, et al
From landraces to improved cultivars: Assessment of genetic diversity and population structure of Mediterranean wheat using SNP markers.
PLoS One. 2019;14:e0219867.
PubMed Abstract available

PAN L, Yu X, Shao J, Liu Z, et al
Transcriptomic profiling and analysis of differentially expressed genes in asparagus bean (Vigna unguiculata ssp. sesquipedalis) under salt stress.
PLoS One. 2019;14:e0219799.
PubMed Abstract available

WIEBEN ED, Aleff RA, Basu S, Sarangi V, et al
Amplification-free long-read sequencing of TCF4 expanded trinucleotide repeats in Fuchs Endothelial Corneal Dystrophy.
PLoS One. 2019;14:e0219446.
PubMed Abstract available

MATHEW R, Opperman CH
The genome of the migratory nematode, Radopholus similis, reveals signatures of close association to the sedentary cyst nematodes.
PLoS One. 2019;14:e0224391.
PubMed Abstract available

MOURA EG, Pamplona AKA, Balestre M
Functional models in genome-wide selection.
PLoS One. 2019;14:e0222699.
PubMed Abstract available

BLETZ MC, Bunk B, Sproer C, Biwer P, et al
Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts.
PLoS One. 2019;14:e0223747.
PubMed Abstract available

GUZMAN-FLORES JE, Steinemann-Hernandez L, Gonzalez de la Vara LE, Gavilanes-Ruiz M, et al
Proteomic analysis of Escherichia coli detergent-resistant membranes (DRM).
PLoS One. 2019;14:e0223794.
PubMed Abstract available

VAN DER MEEREN LE, Kluiver J, Rutgers B, Alsagoor Y, et al
A super-SILAC based proteomics analysis of diffuse large B-cell lymphoma-NOS patient samples to identify new proteins that discriminate GCB and non-GCB lymphomas.
PLoS One. 2019;14:e0223260.
PubMed Abstract available

ANDREEV VP, Liu G, Zee J, Henn L, et al
Clustering of the structures by using "snakes-&-dragons" approach, or correlation matrix as a signal.
PLoS One. 2019;14:e0223267.
PubMed Abstract available

JANGTARWAN K, Koomgun T, Prasongmaneerut T, Thongchum R, et al
Take one step backward to move forward: Assessment of genetic diversity and population structure of captive Asian woolly-necked storks (Ciconia episcopus).
PLoS One. 2019;14:e0223726.
PubMed Abstract available

ZHENG L, Zhang Y, Hao S, Chen L, et al
A proteomic clock for malignant gliomas: The role of the environment in tumorigenesis at the presymptomatic stage.
PLoS One. 2019;14:e0223558.
PubMed Abstract available

SHRESTHA A, Champagne DE, Culbreath AK, Abney MR, et al
Comparison of transcriptomes of an orthotospovirus vector and non-vector thrips species.
PLoS One. 2019;14:e0223438.
PubMed Abstract available

CHEN S, Soehnlen M, Blom J, Terrapon N, et al
Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains.
PLoS One. 2019;14:e0222648.
PubMed Abstract available

ABDELATTY AM, Mohamed SA, Moustafa MMA, Al-Mokaddem AK, et al
Nutrigenomic effect of conjugated linoleic acid on growth and meat quality indices of growing rabbit.
PLoS One. 2019;14:e0222404.
PubMed Abstract available

PILAAR BIRCH SE, Atici L, Erdogu B
Spread of domestic animals across Neolithic western Anatolia: New stable isotope evidence from Ugurlu Hoyuk, the island of Gokceada, Turkey.
PLoS One. 2019;14:e0222319.
PubMed Abstract available

HENDRIKSEN RS, Lukjancenko O, Munk P, Hjelmso MH, et al
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach.
PLoS One. 2019;14:e0222531.
PubMed Abstract available

SAKUMA K, Ishida R, Kodama T, Takada Y, et al
Reconstructing the population history of the sandy beach amphipod Haustorioides japonicus using the calibration of demographic transition (CDT) approach.
PLoS One. 2019;14:e0223624.
PubMed Abstract available

ALLEGRINI M, Gomez EDV, Smalla K, Zabaloy MC, et al
Suppression treatment differentially influences the microbial community and the occurrence of broad host range plasmids in the rhizosphere of the model cover crop Avena sativa L.
PLoS One. 2019;14:e0223600.
PubMed Abstract available

ANAGNOSTOU P, Dominici V, Battaggia C, Lisi A, et al
Inter-individual genomic heterogeneity within European population isolates.
PLoS One. 2019;14:e0214564.
PubMed Abstract available

ALVAREZ-VARAS R, Veliz D, Velez-Rubio GM, Fallabrino A, et al
Identifying genetic lineages through shape: An example in a cosmopolitan marine turtle species using geometric morphometrics.
PLoS One. 2019;14:e0223587.
PubMed Abstract available

KOTSIAS M, Blanas A, van Vliet SJ, Pirro M, et al
Method comparison for N-glycan profiling: Towards the standardization of glycoanalytical technologies for cell line analysis.
PLoS One. 2019;14:e0223270.
PubMed Abstract available

VIJAYVARGIYA P, Jeraldo PR, Thoendel MJ, Greenwood-Quaintance KE, et al
Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples.
PLoS One. 2019;14:e0222915.
PubMed Abstract available

LABASTIDA-ESTRADA E, Machkour-M'Rabet S, Carrillo L, Henaut Y, et al
Genetic structure of Mexican lionfish populations in the southwest Gulf of Mexico and the Caribbean Sea.
PLoS One. 2019;14:e0222997.
PubMed Abstract available

HAYASHI N, Yamaguchi S, Rodenburg F, Ying Wong S, et al
Multiple biomarkers of sepsis identified by novel time-lapse proteomics of patient serum.
PLoS One. 2019;14:e0222403.
PubMed Abstract available

TELFER E, Graham N, Macdonald L, Li Y, et al
A high-density exome capture genotype-by-sequencing panel for forestry breeding in Pinus radiata.
PLoS One. 2019;14:e0222640.
PubMed Abstract available

DOIDY J, Vidal U, Lemoine R
Sugar transporters in Fabaceae, featuring SUT MST and SWEET families of the model plant Medicago truncatula and the agricultural crop Pisum sativum.
PLoS One. 2019;14:e0223173.
PubMed Abstract available

JARMAN R, Mattioni C, Russell K, Chambers FM, et al
DNA analysis of Castanea sativa (sweet chestnut) in Britain and Ireland: Elucidating European origins and genepool diversity.
PLoS One. 2019;14:e0222936.
PubMed Abstract available

WESTBURY MV, Petersen B, Lorenzen ED
Genomic analyses reveal an absence of contemporary introgressive admixture between fin whales and blue whales, despite known hybrids.
PLoS One. 2019;14:e0222004.
PubMed Abstract available

BALDO D, Araujo-Vieira K, Cardozo D, Borteiro C, et al
A review of the elusive bicolored iris Snouted Treefrogs (Anura: Hylidae:Scinax uruguayus group).
PLoS One. 2019;14:e0222131.
PubMed Abstract available

ADETUNJI MO, Lamont SJ, Abasht B, Schmidt CJ, et al
Variant analysis pipeline for accurate detection of genomic variants from transcriptome sequencing data.
PLoS One. 2019;14:e0216838.
PubMed Abstract available

GUIRRO M, Costa A, Gual-Grau A, Herrero P, et al
Effects from diet-induced gut microbiota dysbiosis and obesity can be ameliorated by fecal microbiota transplantation: A multiomics approach.
PLoS One. 2019;14:e0218143.
PubMed Abstract available

YANG M, Gong L, Sui J, Li X, et al
The complete mitochondrial genome of Calyptogena marissinica (Heterodonta: Veneroida: Vesicomyidae): Insight into the deep-sea adaptive evolution of vesicomyids.
PLoS One. 2019;14:e0217952.
PubMed Abstract available

YAMAGUCHI MS, Ganz HH, Cho AW, Zaw TH, et al
Bacteria isolated from Bengal cat (Felis catus x Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling.
PLoS One. 2019;14:e0216846.
PubMed Abstract available

MALDONADO MBC, de Rezende Neto NB, Nagamatsu ST, Carazzolle MF, et al
Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation.
PLoS One. 2019;14:e0222329.
PubMed Abstract available

IKUNO A, Akeda K, Takebayashi SI, Shimaoka M, et al
Genome-wide analysis of DNA methylation profile identifies differentially methylated loci associated with human intervertebral disc degeneration.
PLoS One. 2019;14:e0222188.
PubMed Abstract available

MERSHA FB, Cortes LK, Luck AN, McClung CM, et al
Computational and experimental analysis of the glycophosphatidylinositol-anchored proteome of the human parasitic nematode Brugia malayi.
PLoS One. 2019;14:e0216849.
PubMed Abstract available

EVANS BJ, Gansauge MT, Stanley EL, Furman BLS, et al
Xenopus fraseri: Mr. Fraser, where did your frog come from?
PLoS One. 2019;14:e0220892.
PubMed Abstract available

KING CH, Desai H, Sylvetsky AC, LoTempio J, et al
Baseline human gut microbiota profile in healthy people and standard reporting template.
PLoS One. 2019;14:e0206484.
PubMed Abstract available

PLON S, Thakur V, Parr L, Lavery SD, et al
Phylogeography of the dugong (Dugong dugon) based on historical samples identifies vulnerable Indian Ocean populations.
PLoS One. 2019;14:e0219350.
PubMed Abstract available

KAMMONEN JI, Smolander OP, Paulin L, Pereira PAB, et al
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output.
PLoS One. 2019;14:e0216885.
PubMed Abstract available

SCHAFFAR R, Bouchardy C, Chappuis PO, Bodmer A, et al
A population-based cohort of young women diagnosed with breast cancer in Geneva, Switzerland.
PLoS One. 2019;14:e0222136.
PubMed Abstract available

MORACH M, Kappeli N, Hochreutener M, Johler S, et al
Microarray based genetic profiling of Staphylococcus aureus isolated from abattoir byproducts of pork origin.
PLoS One. 2019;14:e0222036.
PubMed Abstract available

KAUR H, Bhalla S, Raghava GPS
Classification of early and late stage liver hepatocellular carcinoma patients from their genomics and epigenomics profiles.
PLoS One. 2019;14:e0221476.
PubMed Abstract available

DANCZAK RE, Johnston MD, Kenah C, Slattery M, et al
Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages.
PLoS One. 2019;14:e0221694.
PubMed Abstract available

MARTINEZ-VILLEGAS L, Assis-Geraldo J, Koerich LB, Collier TC, et al
Characterization of the complete mitogenome of Anopheles aquasalis, and phylogenetic divergences among Anopheles from diverse geographic zones.
PLoS One. 2019;14:e0219523.
PubMed Abstract available

TRUNG NV, Hoi LT, Cuong DD, Ha DT, et al
Analysis of the 56-kDa type specific antigen gene of Orientia tsutsugamushi from northern Vietnam.
PLoS One. 2019;14:e0221588.
PubMed Abstract available

RODRIGUEZ-CASTRO L, Mendez V, Duran RE, Seeger M, et al
Long-chain flavodoxin FldX1 improves Paraburkholderia xenovorans LB400 tolerance to oxidative stress caused by paraquat and H2O2.
PLoS One. 2019;14:e0221881.
PubMed Abstract available

KARMACHARYA D, Manandhar P, Manandhar S, Sherchan AM, et al
Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal.
PLoS One. 2019;14:e0221868.
PubMed Abstract available

NAM O, Park JM, Lee H, Jin E, et al
De novo transcriptome profile of coccolithophorid alga Emiliania huxleyi CCMP371 at different calcium concentrations with proteome analysis.
PLoS One. 2019;14:e0221938.
PubMed Abstract available

IMAI A, Kuniga T, Yoshioka T, Nonaka K, et al
Single-step genomic prediction of fruit-quality traits using phenotypic records of non-genotyped relatives in citrus.
PLoS One. 2019;14:e0221880.
PubMed Abstract available

PICARD C, Poirier A, Belanger S, Labonte A, et al
Proprotein convertase subtilisin/kexin type 9 (PCSK9) in Alzheimer's disease: A genetic and proteomic multi-cohort study.
PLoS One. 2019;14:e0220254.
PubMed Abstract available

MESZAROS VA, Miller-Dickson MD, Ogbunugafor CB
Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes.
PLoS One. 2019;14:e0220891.
PubMed Abstract available

RICHTER J, Tryfonos C, Christodoulou C
Molecular epidemiology of enteroviruses in Cyprus 2008-2017.
PLoS One. 2019;14:e0220938.
PubMed Abstract available

YAMASHITA H, Katai H, Kawaguchi L, Nagano AJ, et al
Analyses of single nucleotide polymorphisms identified by ddRAD-seq reveal genetic structure of tea germplasm and Japanese landraces for tea breeding.
PLoS One. 2019;14:e0220981.
PubMed Abstract available

FRADERA-SOLA A, Thomas A, Gasior D, Harper J, et al
Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne).
PLoS One. 2019;14:e0220518.
PubMed Abstract available

LIAO Z, Jiang YT, Sun Q, Fan MH, et al
Microstructure and in-depth proteomic analysis of Perna viridis shell.
PLoS One. 2019;14:e0219699.
PubMed Abstract available

COUVIN D, Reynaud Y, Rastogi N
Two tales: Worldwide distribution of Central Asian (CAS) versus ancestral East-African Indian (EAI) lineages of Mycobacterium tuberculosis underlines a remarkable cleavage for phylogeographical, epidemiological and demographical characteristics.
PLoS One. 2019;14:e0219706.
PubMed Abstract available

YAKKALA H, Samantarrai D, Gribskov M, Siddavattam D, et al
Comparative genome analysis reveals niche-specific genome expansion in Acinetobacter baumannii strains.
PLoS One. 2019;14:e0218204.
PubMed Abstract available

DILLON EL, Soman KV, Wiktorowicz JE, Sur R, et al
Proteomic investigation of human skeletal muscle before and after 70 days of head down bed rest with or without exercise and testosterone countermeasures.
PLoS One. 2019;14:e0217690.
PubMed Abstract available

XUE H, Tian X, Zhang K, Li W, et al
Mapping developmental QTL for plant height in soybean [Glycine max (L.) Merr.] using a four-way recombinant inbred line population.
PLoS One. 2019;14:e0224897.
PubMed Abstract available

WU Z, Zhang X, He Z, Hou L, et al
Identifying candidate diagnostic markers for early stage of non-small cell lung cancer.
PLoS One. 2019;14:e0225080.
PubMed Abstract available

PRUSSING C, Emerson KJ, Bickersmith SA, Sallum MAM, et al
Minimal genetic differentiation of the malaria vector Nyssorhynchus darlingi associated with forest cover level in Amazonian Brazil.
PLoS One. 2019;14:e0225005.
PubMed Abstract available

ANDRADE LRB, Sousa MBE, Oliveira EJ, Resende MDV, et al
Cassava yield traits predicted by genomic selection methods.
PLoS One. 2019;14:e0224920.
PubMed Abstract available

LIAO F, Chen H, Xie J, Zhan S, et al
Molecular epidemiological characteristics of dengue virus carried by 34 patients in Guangzhou in 2018.
PLoS One. 2019;14:e0224676.
PubMed Abstract available

DALMOLIN DA, Tozetti AM, Ramos Pereira MJ
Taxonomic and functional anuran beta diversity of a subtropical metacommunity respond differentially to environmental and spatial predictors.
PLoS One. 2019;14:e0214902.
PubMed Abstract available

BUGLIONE M, Petrelli S, Maselli V, Trapanese M, et al
Fixation of genetic variation and optimization of gene expression: The speed of evolution in isolated lizard populations undergoing Reverse Island Syndrome.
PLoS One. 2019;14:e0224607.
PubMed Abstract available

WHITT CE, Tauer LW, Huson H
Bull efficiency using dairy genetic traits.
PLoS One. 2019;14:e0223436.
PubMed Abstract available

PANGA V, Kallor AA, Nair A, Harshan S, et al
Mitochondrial dysfunction in rheumatoid arthritis: A comprehensive analysis by integrating gene expression, protein-protein interactions and gene ontology data.
PLoS One. 2019;14:e0224632.
PubMed Abstract available

LUO Y, Wu Y, Qian E, Wang Q, et al
Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei.
PLoS One. 2019;14:e0224601.
PubMed Abstract available

MOREYRA NN, Mensch J, Hurtado J, Almeida F, et al
What does mitogenomics tell us about the evolutionary history of the Drosophila buzzatii cluster (repleta group)?
PLoS One. 2019;14:e0220676.
PubMed Abstract available

MANSOOR S, Ahmed N, Sharma V, Jan S, et al
Elucidating genetic variability and population structure in Venturia inaequalis associated with apple scab diseaseusing SSR markers.
PLoS One. 2019;14:e0224300.
PubMed Abstract available

KATSOGIANNOU M, Boyer JB, Valdeolivas A, Remy E, et al
Integrative proteomic and phosphoproteomic profiling of prostate cell lines.
PLoS One. 2019;14:e0224148.
PubMed Abstract available

WANG X, Cheng Y, Yang C, Yang C, et al
QTL mapping for aluminum tolerance in RIL population of soybean (Glycine max L.) by RAD sequencing.
PLoS One. 2019;14:e0223674.
PubMed Abstract available

TAKEDA S, Yoza M, Amano T, Ohshima I, et al
Comparative transcriptome analysis of galls from four different host plants suggests the molecular mechanism of gall development.
PLoS One. 2019;14:e0223686.
PubMed Abstract available

VAN RIJN AL, van Boheemen S, Sidorov I, Carbo EC, et al
The respiratory virome and exacerbations in patients with chronic obstructive pulmonary disease.
PLoS One. 2019;14:e0223952.
PubMed Abstract available

CRATES R, Olah G, Adamski M, Aitken N, et al
Genomic impact of severe population decline in a nomadic songbird.
PLoS One. 2019;14:e0223953.
PubMed Abstract available

AMARAL CRL, Chaves ACS, Borges Junior VNT, Pereira F, et al
Amphibians on the hotspot: Molecular biology and conservation in the South American Atlantic Rainforest.
PLoS One. 2019;14:e0224320.
PubMed Abstract available

PEREZ-MUNOZ ME, McKnite AM, Williams EG, Auwerx J, et al
Diet modulates cecum bacterial diversity and physiological phenotypes across the BXD mouse genetic reference population.
PLoS One. 2019;14:e0224100.
PubMed Abstract available

MANDEL JR, Major CK, Bayer RJ, Moore JE, et al
Clonal diversity and spatial genetic structure in the long-lived herb, Prairie trillium.
PLoS One. 2019;14:e0224123.
PubMed Abstract available

CLAVIJO MJ, Sreevatsan S, Johnson TJ, Rovira A, et al
Molecular epidemiology of Mycoplasma hyorhinis porcine field isolates in the United States.
PLoS One. 2019;14:e0223653.
PubMed Abstract available

DIAKITE A, Dubourg G, Dione N, Afouda P, et al
Extensive culturomics of 8 healthy samples enhances metagenomics efficiency.
PLoS One. 2019;14:e0223543.
PubMed Abstract available

SILVA C, Calva E, Fernandez-Mora M, Puente JL, et al
Population analysis of D6-like plasmid prophage variants associated with specific IncC plasmid types in the emerging Salmonella Typhimurium ST213 genotype.
PLoS One. 2019;14:e0223975.
PubMed Abstract available

BACHTIAR M, Jin Y, Wang J, Tan TW, et al
Architecture of population-differentiated polymorphisms in the human genome.
PLoS One. 2019;14:e0224089.
PubMed Abstract available

CAICEDO-GARZON V, Salgado-Roa FC, Sanchez-Herrera M, Hernandez C, et al
Genetic diversification of Panstrongylus geniculatus (Reduviidae: Triatominae) in northern South America.
PLoS One. 2019;14:e0223963.
PubMed Abstract available

BEST LG, Balakrishnan P, Cole SA, Haack K, et al
Genetic analysis of hsCRP in American Indians: The Strong Heart Family Study.
PLoS One. 2019;14:e0223574.
PubMed Abstract available

GUO B, Li D, Lin S, Li Y, et al
Regulation of nitrogen availability results in changes in grain protein content and grain storage subproteomes in barley (Hordeum vulgare L.).
PLoS One. 2019;14:e0223831.
PubMed Abstract available

MEHRBAN H, Lee DH, Naserkheil M, Moradi MH, et al
Comparison of conventional BLUP and single-step genomic BLUP evaluations for yearling weight and carcass traits in Hanwoo beef cattle using single trait and multi-trait models.
PLoS One. 2019;14:e0223352.
PubMed Abstract available

ORLOWSKA K, Swigonska S, Sadowska A, Ruszkowska M, et al
Proteomic changes of aryl hydrocarbon receptor (AhR)-silenced porcine granulosa cells exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD).
PLoS One. 2019;14:e0223420.
PubMed Abstract available

CASARIL AE, Alonso DP, Franco KG, Alvarez MVN, et al
Macrogeographic genetic structure of Lutzomyia longipalpis complex populations using Next Generation Sequencing.
PLoS One. 2019;14:e0223277.
PubMed Abstract available

LOPES LD, Weisberg AJ, Davis EW 2nd, Varize CS, et al
Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil.
PLoS One. 2019;14:e0223269.
PubMed Abstract available

REIS-CUNHA JL, Bartholomeu DC, Manson AL, Earl AM, et al
ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database.
PLoS One. 2019;14:e0223364.
PubMed Abstract available

WEI X, You L, Wang D, Huang H, et al
Antimicrobial resistance and molecular genotyping of Salmonella enterica serovar Enteritidis clinical isolates from Guizhou province of Southwestern China.
PLoS One. 2019;14:e0221492.
PubMed Abstract available

DIRAY-ARCE J, Knowles A, Suvorov A, O'Brien J, et al
Identification and evolutionary characterization of salt-responsive transcription factors in the succulent halophyte Suaeda fruticosa.
PLoS One. 2019;14:e0222940.
PubMed Abstract available

WEINSTEIN SY, Thrower FP, Nichols KM, Hale MC, et al
A large-scale chromosomal inversion is not associated with life history development in rainbow trout from Southeast Alaska.
PLoS One. 2019;14:e0223018.
PubMed Abstract available

ZHANG W, Hu C, Wang X, Bai S, et al
Role of GDF15 in methylseleninic acid-mediated inhibition of cell proliferation and induction of apoptosis in prostate cancer cells.
PLoS One. 2019;14:e0222812.
PubMed Abstract available

GARIBOLDI MC, Inserra PIF, Lucero S, Failla M, et al
Unexpected low genetic variation in the South American hystricognath rodent Lagostomus maximus (Rodentia: Chinchillidae).
PLoS One. 2019;14:e0221559.
PubMed Abstract available

ZUYKOVA EI, Bochkarev NA, Taylor DJ, Kotov AA, et al
Unexpected endemism in the Daphnia longispina complex (Crustacea: Cladocera) in Southern Siberia.
PLoS One. 2019;14:e0221527.
PubMed Abstract available

RUJIMONGKON K, Mungthin M, Tummatorn J, Ampawong S, et al
Proteomic analysis of Plasmodium falciparum response to isocryptolepine derivative.
PLoS One. 2019;14:e0220871.
PubMed Abstract available

ROCHA LS, Silva DM, Silva MP, Vidigal PMP, et al
Comparative genomics of Staphylococcus aureus associated with subclinical and clinical bovine mastitis.
PLoS One. 2019;14:e0220804.
PubMed Abstract available

SUNG JY, Shin HT, Sohn KA, Shin SY, et al
Assessment of intratumoral heterogeneity with mutations and gene expression profiles.
PLoS One. 2019;14:e0219682.
PubMed Abstract available

FROUIN J, Labeyrie A, Boisnard A, Sacchi GA, et al
Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains.
PLoS One. 2019;14:e0217516.
PubMed Abstract available

HUISMAN JLA, Majid A, van Hout R
The geographical configuration of a language area influences linguistic diversity.
PLoS One. 2019;14:e0217363.
PubMed Abstract available

REVECO-URZUA FE, Hofossaeter M, Rao Kovi M, Mydland LT, et al
Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses.
PLoS One. 2019;14:e0218360.
PubMed Abstract available

BERENS ME, Sood A, Barnholtz-Sloan JS, Graf JF, et al
Multiscale, multimodal analysis of tumor heterogeneity in IDH1 mutant vs wild-type diffuse gliomas.
PLoS One. 2019;14:e0219724.
PubMed Abstract available

COWAN K, Macluskie G, Finch M, Palmer CNA, et al
Application of pharmacogenomics and bioinformatics to exemplify the utility of human ex vivo organoculture models in the field of precision medicine.
PLoS One. 2019;14:e0226564.
PubMed Abstract available

HERVAS-MARIN D, Higgins F, Sanmartin O, Lopez-Guerrero JA, et al
Genome wide DNA methylation profiling identifies specific epigenetic features in high-risk cutaneous squamous cell carcinoma.
PLoS One. 2019;14:e0223341.
PubMed Abstract available

SILVA BSML, Heringer P, Dias GB, Svartman M, et al
De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines.
PLoS One. 2019;14:e0223466.
PubMed Abstract available

PAL A, Saha BK, Saha J
Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination.
PLoS One. 2019;14:e0219231.
PubMed Abstract available

SHAMS F, Dyer F, Thompson R, Duncan RP, et al
Application of DArT seq derived SNP tags for comparative genome analysis in fishes; An alternative pipeline using sequence data from a non-traditional model species, Macquaria ambigua.
PLoS One. 2019;14:e0226365.
PubMed Abstract available

MICHAILIDOU S, Tsangaris GT, Tzora A, Skoufos I, et al
Analysis of genome-wide DNA arrays reveals the genomic population structure and diversity in autochthonous Greek goat breeds.
PLoS One. 2019;14:e0226179.
PubMed Abstract available

WOLOSZYNEK S, Mell JC, Zhao Z, Simpson G, et al
Exploring thematic structure and predicted functionality of 16S rRNA amplicon data.
PLoS One. 2019;14:e0219235.
PubMed Abstract available

MUSHTAQ H, Ahmed N, Al-Ars Z
SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework.
PLoS One. 2019;14:e0224784.
PubMed Abstract available

VIDMAN L, Kallberg D, Ryden P
Cluster analysis on high dimensional RNA-seq data with applications to cancer research - An evaluation study.
PLoS One. 2019;14:e0219102.
PubMed Abstract available

YOON JY, Sy K, Brezden-Masley C, Streutker CJ, et al
Histo- and immunohistochemistry-based estimation of the TCGA and ACRG molecular subtypes for gastric carcinoma and their prognostic significance: A single-institution study.
PLoS One. 2019;14:e0224812.
PubMed Abstract available

ASAF S, Khan A, Khan AL, Al-Harrasi A, et al
Complete Chloroplast Genomes of Vachellia nilotica and Senegalia senegal: Comparative Genomics and Phylogenomic Placement in a New Generic System.
PLoS One. 2019;14:e0225469.
PubMed Abstract available

BANOS G, Clark EL, Bush SJ, Dutta P, et al
Genetic and genomic analyses underpin the feasibility of concomitant genetic improvement of milk yield and mastitis resistance in dairy sheep.
PLoS One. 2019;14:e0214346.
PubMed Abstract available

LIN Z, Xiong Y, Xue Y, Mao M, et al
Screening and characterization of long noncoding RNAs involved in the albinism of Ananas comosus var. bracteatus leaves.
PLoS One. 2019;14:e0225602.
PubMed Abstract available

ABBAS M, Matta J, Le T, Bensmail H, et al
Biomarker discovery in inflammatory bowel diseases using network-based feature selection.
PLoS One. 2019;14:e0225382.
PubMed Abstract available

MANDACARU SC, Queiroz RML, Alborghetti MR, de Oliveira LS, et al
Exoproteome profiling of Trypanosoma cruzi during amastigogenesis early stages.
PLoS One. 2019;14:e0225386.
PubMed Abstract available

WANG W, Liu Q, Wang Y, Piao H, et al
Verification of hub genes in the expression profile of aortic dissection.
PLoS One. 2019;14:e0224922.
PubMed Abstract available

BIAN J, Liang M, Ding S, Wang L, et al
iTRAQ-based high-throughput proteomics analysis reveals alterations of plasma proteins in patients infected with human bocavirus.
PLoS One. 2019;14:e0225261.
PubMed Abstract available

ECKSTROM K, Barlow JW
Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm.
PLoS One. 2019;14:e0219807.
PubMed Abstract available

BABA H, Kanamori H, Kudo H, Kuroki Y, et al
Genomic analysis of Shiga toxin-producing Escherichia coli from patients and asymptomatic food handlers in Japan.
PLoS One. 2019;14:e0225340.
PubMed Abstract available

AZEEZ OI, Myburgh JG, Bosman AM, Featherston J, et al
Next generation sequencing and RNA-seq characterization of adipose tissue in the Nile crocodile (Crocodylus niloticus) in South Africa: Possible mechanism(s) of pathogenesis and pathophysiology of pansteatitis.
PLoS One. 2019;14:e0225073.
PubMed Abstract available

ROZOVA ON, Mustakhimov II, But SY, Reshetnikov AS, et al
Role of the malic enzyme in metabolism of the halotolerant methanotroph Methylotuvimicrobium alcaliphilum 20Z.
PLoS One. 2019;14:e0225054.
PubMed Abstract available

CREMER SE, Catalfamo JL, Goggs R, Seemann SE, et al
Proteomic profiling of the thrombin-activated canine platelet secretome (CAPS).
PLoS One. 2019;14:e0224891.
PubMed Abstract available

QIANG J, Khamis OAM, Jiang HJ, Cao ZM, et al
Effects of dietary supplementation with apple peel powder on the growth, blood and liver parameters, and transcriptome of genetically improved farmed tilapia (GIFT, Oreochromis niloticus).
PLoS One. 2019;14:e0224995.
PubMed Abstract available

LI L, Wang F, Li X, Peng Y, et al
Comparative analysis of the accelerated aged seed transcriptome profiles of two maize chromosome segment substitution lines.
PLoS One. 2019;14:e0216977.
PubMed Abstract available

STEFANOVIC M, Djan M, Velickovic N, Beukovic D, et al
Positive selection and precipitation effects on the mitochondrial NADH dehydrogenase subunit 6 gene in brown hares (Lepus europaeus) under a phylogeographic perspective.
PLoS One. 2019;14:e0224902.
PubMed Abstract available

KATO S, Hirai M, Ohkuma M, Suzuki K, et al
Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics.
PLoS One. 2019;14:e0224888.
PubMed Abstract available

WANG X, Li D, Song S, Zhang Y, et al
Combined transcriptomics and proteomics forecast analysis for potential genes regulating the Columbian plumage color in chickens.
PLoS One. 2019;14:e0210850.
PubMed Abstract available

YANG J, Pak JH, Maki M, Kim SC, et al
Multiple origins and the population genetic structure of Rubus takesimensis (Rosaceae) on Ulleung Island: Implications for the genetic consequences of anagenetic speciation.
PLoS One. 2019;14:e0222707.
PubMed Abstract available

HEYDEL JM, Menetrier F, Belloir C, Canon F, et al
Characterization of rat glutathione transferases in olfactory epithelium and mucus.
PLoS One. 2019;14:e0220259.
PubMed Abstract available

VIJZELAAR R, Snetselaar R, Clausen M, Mason AG, et al
The frequency of SMN gene variants lacking exon 7 and 8 is highly population dependent.
PLoS One. 2019;14:e0220211.
PubMed Abstract available

MOODLEY V, Gubba A, Mafongoya PL
Prevalence, epidemiology and molecular studies of Tomato chlorosis virus (ToCV) in South Africa.
PLoS One. 2019;14:e0220298.
PubMed Abstract available

TAMAKI S, Nishino K, Ogawa T, Maruta T, et al
Comparative proteomic analysis of mitochondria isolated from Euglena gracilis under aerobic and hypoxic conditions.
PLoS One. 2019;14:e0227226.
PubMed Abstract available

RISPOLI LA, Edwards JL, Pohler KG, Russell S, et al
Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows.
PLoS One. 2019;14:e0227095.
PubMed Abstract available

RUSMILI MRA, Othman I, Abidin SAZ, Yusof FA, et al
Variations in neurotoxicity and proteome profile of Malayan krait (Bungarus candidus) venoms.
PLoS One. 2019;14:e0227122.
PubMed Abstract available

BRUYNEEL AAN, Colas AR, Karakikes I, Mercola M, et al
AlleleProfileR: A versatile tool to identify and profile sequence variants in edited genomes.
PLoS One. 2019;14:e0226694.
PubMed Abstract available

KUMARI R, Wankhede DP, Bajpai A, Maurya A, et al
Genome wide identification and characterization of microsatellite markers in black pepper (Piper nigrum): A valuable resource for boosting genomics applications.
PLoS One. 2019;14:e0226002.
PubMed Abstract available

KHILYAS IV, Sorokina AV, Elistratova AA, Markelova MI, et al
Microbial diversity and mineral composition of weathered serpentine rock of the Khalilovsky massif.
PLoS One. 2019;14:e0225929.
PubMed Abstract available

WALAS L, Ganatsas P, Iszkulo G, Thomas PA, et al
Spatial genetic structure and diversity of natural populations of Aesculus hippocastanum L. in Greece.
PLoS One. 2019;14:e0226225.
PubMed Abstract available

OSIMANI A, Milanovic V, Roncolini A, Riolo P, et al
Hermetia illucens in diets for zebrafish (Danio rerio): A study of bacterial diversity by using PCR-DGGE and metagenomic sequencing.
PLoS One. 2019;14:e0225956.
PubMed Abstract available

CZAJKOWSKA BI, Finlay CM, Jones G, Brown TA, et al
Diversity of a cytokinin dehydrogenase gene in wild and cultivated barley.
PLoS One. 2019;14:e0225899.
PubMed Abstract available

CHOI S, Lee JG, Lee AR, Eun CS, et al
Helicobacter pylori antibody and pepsinogen testing for predicting gastric microbiome abundance.
PLoS One. 2019;14:e0225961.
PubMed Abstract available

DIETL A, Winkel I, Pietrzyk G, Paulus M, et al
Skeletal muscle alterations in tachycardia-induced heart failure are linked to deficient natriuretic peptide signalling and are attenuated by RAS-/NEP-inhibition.
PLoS One. 2019;14:e0225937.
PubMed Abstract available

ADDO S, Klingel S, Hinrichs D, Thaller G, et al
Runs of Homozygosity and NetView analyses provide new insight into the genome-wide diversity and admixture of three German cattle breeds.
PLoS One. 2019;14:e0225847.
PubMed Abstract available

CHEONG HC, Yap PSX, Chong CW, Cheok YY, et al
Diversity of endocervical microbiota associated with genital Chlamydia trachomatis infection and infertility among women visiting obstetrics and gynecology clinics in Malaysia.
PLoS One. 2019;14:e0224658.
PubMed Abstract available

YUSUF A, Peltekova I, Savion-Lemieux T, Frei J, et al
Association between distress and knowledge among parents of autistic children.
PLoS One. 2019;14:e0223119.
PubMed Abstract available

TAMPUU A, Bzhalava Z, Dillner J, Vicente R, et al
ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples.
PLoS One. 2019;14:e0222271.
PubMed Abstract available

DUANGKUMPHA K, Stoll T, Phetcharaburanin J, Yongvanit P, et al
Urine proteomics study reveals potential biomarkers for the differential diagnosis of cholangiocarcinoma and periductal fibrosis.
PLoS One. 2019;14:e0221024.
PubMed Abstract available

PARK Y, Nam HY, Baek S, Lee SH, et al
Population genetic structure of Bemisia tabaci MED (Hemiptera: Aleyrodidae) in Korea.
PLoS One. 2019;14:e0220327.
PubMed Abstract available

SPITZ N, Mello FCA, Moreira AS, Gusatti CS, et al
Reconstruction of the spatial and temporal dynamics of hepatitis B virus genotype D in the Americas.
PLoS One. 2019;14:e0220342.
PubMed Abstract available

TORRES LG, Vilela de Resende MD, Azevedo CF, Fonseca E Silva F, et al
Genomic selection for productive traits in biparental cassava breeding populations.
PLoS One. 2019;14:e0220245.
PubMed Abstract available

January 2018

WANG MN, Duan L, Qiao Q, Wang ZF, et al
Phylogeography and conservation genetics of the rare and relict Bretschneidera sinensis (Akaniaceae).
PLoS One. 2018;13:e0189034.
PubMed Abstract available

CHIVA C, Olivella R, Borras E, Espadas G, et al
QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories.
PLoS One. 2018;13:e0189209.
PubMed Abstract available

SCHNITZLER A, Granado J, Putelat O, Arbogast RM, et al
Genetic diversity, genetic structure and diet of ancient and contemporary red deer (Cervus elaphus L.) from north-eastern France.
PLoS One. 2018;13:e0189278.
PubMed Abstract available

KREHENWINKEL H, Fong M, Kennedy S, Huang EG, et al
The effect of DNA degradation bias in passive sampling devices on metabarcoding studies of arthropod communities and their associated microbiota.
PLoS One. 2018;13:e0189188.
PubMed Abstract available

ZABOIKIN M, Freter C, Srinivasakumar N
Gaussian decomposition of high-resolution melt curve derivatives for measuring genome-editing efficiency.
PLoS One. 2018;13:e0190192.
PubMed Abstract available

BZHALAVA Z, Hultin E, Dillner J
Extension of the viral ecology in humans using viral profile hidden Markov models.
PLoS One. 2018;13:e0190938.
PubMed Abstract available

ANDLEY UP, Tycksen E, McGlasson-Naumann BN, Hamilton PD, et al
Probing the changes in gene expression due to alpha-crystallin mutations in mouse models of hereditary human cataract.
PLoS One. 2018;13:e0190817.
PubMed Abstract available

POLJAK S, Ferreiro AM, Chiappero MB, Sanchez J, et al
Phylogeography of screaming hairy armadillo Chaetophractus vellerosus: Successive disjunctions and extinctions due to cyclical climatic changes in southern South America.
PLoS One. 2018;13:e0190944.
PubMed Abstract available

FISCH-MULLER S, Mol JHA, Covain R
An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complex.
PLoS One. 2018;13:e0189789.
PubMed Abstract available

ABOU-ANTOUN TJ, Nazarian J, Ghanem A, Vukmanovic S, et al
Molecular and functional analysis of anchorage independent, treatment-evasive neuroblastoma tumorspheres with enhanced malignant properties: A possible explanation for radio-therapy resistance.
PLoS One. 2018;13:e0189711.
PubMed Abstract available

CLARK CG, Chen CY, Berry C, Walker M, et al
Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds.
PLoS One. 2018;13:e0190836.
PubMed Abstract available

GUO WL, Chen BH, Chen XJ, Guo YY, et al
Transcriptome profiling of pumpkin (Cucurbita moschata Duch.) leaves infected with powdery mildew.
PLoS One. 2018;13:e0190175.
PubMed Abstract available

CHOUDHARY N, Singh V
A census of P. longum's phytochemicals and their network pharmacological evaluation for identifying novel drug-like molecules against various diseases, with a special focus on neurological disorders.
PLoS One. 2018;13:e0191006.
PubMed Abstract available

BALIC I, Vizoso P, Nilo-Poyanco R, Sanhueza D, et al
Transcriptome analysis during ripening of table grape berry cv. Thompson Seedless.
PLoS One. 2018;13:e0190087.
PubMed Abstract available

VILLEGAS LEM, Campolina TB, Barnabe NR, Orfano AS, et al
Zika virus infection modulates the bacterial diversity associated with Aedes aegypti as revealed by metagenomic analysis.
PLoS One. 2018;13:e0190352.
PubMed Abstract available

CHOI JE, Nguyen CM, Lee B, Park JH, et al
Isolation and characterization of a novel metagenomic enzyme capable of degrading bacterial phytotoxin toxoflavin.
PLoS One. 2018;13:e0183893.
PubMed Abstract available

DOGAN MV, Grumbach IM, Michaelson JJ, Philibert RA, et al
Integrated genetic and epigenetic prediction of coronary heart disease in the Framingham Heart Study.
PLoS One. 2018;13:e0190549.
PubMed Abstract available

PETKEVICIUTE R, Stunzenas V, Staneviciute G
Comments on species divergence in the genus Sphaerium (Bivalvia) and phylogenetic affinities of Sphaerium nucleus and S. corneum var. mamillanum based on karyotypes and sequences of 16S and ITS1 rDNA.
PLoS One. 2018;13:e0191427.
PubMed Abstract available

LIU J, Liu J, Wang G, Liu G, et al
Electroacupuncture at Guanyuan (CV 4), Zusanli (ST 36) and Baihui (DU 20) regulate the aging-related changes in gene expression profile of the hippocampus in sub-acutely aging rats.
PLoS One. 2018;13:e0191623.
PubMed Abstract available

TALUKDER SK, Azhaguvel P, Chekhovskiy K, Saha MC, et al
Molecular discrimination of tall fescue morphotypes in association with Festuca relatives.
PLoS One. 2018;13:e0191343.
PubMed Abstract available

TORRES SMF, Furrow E, Souza CP, Granick JL, et al
Salivary proteomics of healthy dogs: An in depth catalog.
PLoS One. 2018;13:e0191307.
PubMed Abstract available

ZHAN Y, Marchand CH, Maes A, Mauries A, et al
Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii.
PLoS One. 2018;13:e0185039.
PubMed Abstract available

FUJITA T, Kozuka-Hata H, Hori Y, Takeuchi J, et al
Shotgun proteomics deciphered age/division of labor-related functional specification of three honeybee (Apis mellifera L.) exocrine glands.
PLoS One. 2018;13:e0191344.
PubMed Abstract available

REYES-VELASCO J, Manthey JD, Bourgeois Y, Freilich X, et al
Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data.
PLoS One. 2018;13:e0190440.
PubMed Abstract available

MAYFIELD AB, Chen YJ, Lu CY, Chen CS, et al
The proteomic response of the reef coral Pocillopora acuta to experimentally elevated temperatures.
PLoS One. 2018;13:e0192001.
PubMed Abstract available

HIBINO A, Saito R, Taniguchi K, Zaraket H, et al
Molecular epidemiology of human respiratory syncytial virus among children in Japan during three seasons and hospitalization risk of genotype ON1.
PLoS One. 2018;13:e0192085.
PubMed Abstract available

GHANDHI SA, Turner HC, Shuryak I, Dugan GO, et al
Whole thorax irradiation of non-human primates induces persistent nuclear damage and gene expression changes in peripheral blood cells.
PLoS One. 2018;13:e0191402.
PubMed Abstract available

ZHAN XY, Zhu QY
Molecular typing of Legionella pneumophila isolates from environmental water samples and clinical samples using a five-gene sequence typing and standard Sequence-Based Typing.
PLoS One. 2018;13:e0190986.
PubMed Abstract available

AIBEKOVA L, Foley B, Hortelano G, Raees M, et al
Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries.
PLoS One. 2018;13:e0191891.
PubMed Abstract available

NOLL LW, Worley JN, Yang X, Shridhar PB, et al
Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin.
PLoS One. 2018;13:e0191362.
PubMed Abstract available

LEVANEN R, Thulin CG, Spong G, Pohjoismaki JLO, et al
Widespread introgression of mountain hare genes into Fennoscandian brown hare populations.
PLoS One. 2018;13:e0191790.
PubMed Abstract available

ALKHAMIS MA, Gallardo C, Jurado C, Soler A, et al
Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa.
PLoS One. 2018;13:e0192565.
PubMed Abstract available

VONDRACEK D, Fuchsova A, Ahrens D, Kral D, et al
Phylogeography and DNA-based species delimitation provide insight into the taxonomy of the polymorphic rose chafer Protaetia (Potosia) cuprea species complex (Coleoptera: Scarabaeidae: Cetoniinae) in the Western Palearctic.
PLoS One. 2018;13:e0192349.
PubMed Abstract available

WALLACE JC, Youngblood JE, Port JA, Cullen AC, et al
Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts.
PLoS One. 2018;13:e0192412.
PubMed Abstract available

TADESSE G, Tessema TS, Beyene G, Aseffa A, et al
Molecular epidemiology of fluoroquinolone resistant Salmonella in Africa: A systematic review and meta-analysis.
PLoS One. 2018;13:e0192575.
PubMed Abstract available

DWIVEDI B, Kowalski J
shinyGISPA: A web application for characterizing phenotype by gene sets using multiple omics data combinations.
PLoS One. 2018;13:e0192563.
PubMed Abstract available

DE LA FUENTE C, Pinkham C, Dabbagh D, Beitzel B, et al
Phosphoproteomic analysis reveals Smad protein family activation following Rift Valley fever virus infection.
PLoS One. 2018;13:e0191983.
PubMed Abstract available

YANG H, Cai Y, Zhuo Z, Yang W, et al
Transcriptome analysis in different developmental stages of Batocera horsfieldi (Coleoptera: Cerambycidae) and comparison of candidate olfactory genes.
PLoS One. 2018;13:e0192730.
PubMed Abstract available

GAUTAM SS, Mac Aogain M, Cooley LA, Haug G, et al
Molecular epidemiology of tuberculosis in Tasmania and genomic characterisation of its first known multi-drug resistant case.
PLoS One. 2018;13:e0192351.
PubMed Abstract available

KANITZ R, Guillot EG, Antoniazza S, Neuenschwander S, et al
Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses.
PLoS One. 2018;13:e0192460.
PubMed Abstract available

VALLES SM, Porter SD, Calcaterra LA
Prospecting for viral natural enemies of the fire ant Solenopsis invicta in Argentina.
PLoS One. 2018;13:e0192377.
PubMed Abstract available

DRAG M, Hansen MB, Kadarmideen HN
Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.
PLoS One. 2018;13:e0192673.
PubMed Abstract available

KUZUYA K, Ichihara S, Suzuki Y, Inoue C, et al
Proteomics analysis identified peroxiredoxin 2 involved in early-phase left ventricular impairment in hamsters with cardiomyopathy.
PLoS One. 2018;13:e0192624.
PubMed Abstract available

POURNOSRAT R, Kaya S, Shaaf S, Kilian B, et al
Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia.
PLoS One. 2018;13:e0192386.
PubMed Abstract available

KHAN R, Roy N, Choi K, Lee SW, et al
Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis.
PLoS One. 2018;13:e0192277.
PubMed Abstract available

DONOVAN PD, Gonzalez G, Higgins DG, Butler G, et al
Identification of fungi in shotgun metagenomics datasets.
PLoS One. 2018;13:e0192898.
PubMed Abstract available

DOUILLARD FP, Mora D, Eijlander RT, Wels M, et al
Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.
PLoS One. 2018;13:e0192452.
PubMed Abstract available

KAMAL AHM, Fessler MB, Chowdhury SM
Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages.
PLoS One. 2018;13:e0193104.
PubMed Abstract available

VELEZ G, Machlab DA, Tang PH, Sun Y, et al
Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases.
PLoS One. 2018;13:e0193250.
PubMed Abstract available

COSTA WJEM, Amorim PF, Mattos JLO
Synchronic historical patterns of species diversification in seasonal aplocheiloid killifishes of the semi-arid Brazilian Caatinga.
PLoS One. 2018;13:e0193021.
PubMed Abstract available

TILAHUN M, Ameni G, Desta K, Zewude A, et al
Molecular epidemiology and drug sensitivity pattern of Mycobacterium tuberculosis strains isolated from pulmonary tuberculosis patients in and around Ambo Town, Central Ethiopia.
PLoS One. 2018;13:e0193083.
PubMed Abstract available

HOU L, Ji Z, Wang G, Wang J, et al
Identification and characterization of microRNAs in the intestinal tissues of sheep (Ovis aries).
PLoS One. 2018;13:e0193371.
PubMed Abstract available

DIETRICH MA, Ciereszko A
Proteomic characterization of fresh spermatozoa and supernatant after cryopreservation in relation to freezability of carp (Cyprinus carpio L) semen.
PLoS One. 2018;13:e0192972.
PubMed Abstract available

KORSHUNOVA T, Lundin K, Malmberg K, Picton B, et al
First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution.
PLoS One. 2018;13:e0192177.
PubMed Abstract available

PRIETO-TORRES DA, Cuervo AM, Bonaccorso E
On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes.
PLoS One. 2018;13:e0191598.
PubMed Abstract available

BHOGOJU S, Nahashon S, Wang X, Darris C, et al
A comparative analysis of microbial profile of Guinea fowl and chicken using metagenomic approach.
PLoS One. 2018;13:e0191029.
PubMed Abstract available

TEIXEIRA MA, Sela N, Atamian HS, Bao E, et al
Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.
PLoS One. 2018;13:e0193239.
PubMed Abstract available

XI T, Zhang G
Integrated analysis of tumor differentiation genes in pancreatic adenocarcinoma.
PLoS One. 2018;13:e0193427.
PubMed Abstract available

WOLDESEMAYAT AA, Modise DM, Gemeildien J, Ndimba BK, et al
Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species.
PLoS One. 2018;13:e0192678.
PubMed Abstract available

PAGNUCO IA, Revuelta MV, Bondino HG, Brun M, et al
HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold.
PLoS One. 2018;13:e0193757.
PubMed Abstract available

ABEYRATNE SAE, Amarasekera SSC, Ranaweera LT, Salpadoru TB, et al
The phylogenetic analysis of VP1 genomic region in foot-and-mouth disease virus serotype O isolates in Sri Lanka reveals the existence of 'Srl-97', a newly named endemic lineage.
PLoS One. 2018;13:e0194077.
PubMed Abstract available

CHAVARIE L, Howland KL, Harris LN, Hansen MJ, et al
From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?
PLoS One. 2018;13:e0193925.
PubMed Abstract available

JOHNSON M, Alsaleh N, Mendoza RP, Persaud I, et al
Genomic and transcriptomic comparison of allergen and silver nanoparticle-induced mast cell degranulation reveals novel non-immunoglobulin E mediated mechanisms.
PLoS One. 2018;13:e0193499.
PubMed Abstract available

DAANE KM, Middleton MC, Sforza RFH, Kamps-Hughes N, et al
Determining the geographic origin of invasive populations of the mealybug Planococcus ficus based on molecular genetic analysis.
PLoS One. 2018;13:e0193852.
PubMed Abstract available

BARTOSOVA-SOJKOVA P, Lovy A, Reed CC, Lisnerova M, et al
Life in a rock pool: Radiation and population genetics of myxozoan parasites in hosts inhabiting restricted spaces.
PLoS One. 2018;13:e0194042.
PubMed Abstract available

KIM K, Jung J, Caetano-Anolles K, Sung S, et al
Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle.
PLoS One. 2018;13:e0193701.
PubMed Abstract available

ZHANG Z, Du H, Bai L, Yang C, et al
Whole genome bisulfite sequencing reveals unique adaptations to high-altitude environments in Tibetan chickens.
PLoS One. 2018;13:e0193597.
PubMed Abstract available

THAPA K, Manandhar S, Bista M, Shakya J, et al
Assessment of genetic diversity, population structure, and gene flow of tigers (Panthera tigris tigris) across Nepal's Terai Arc Landscape.
PLoS One. 2018;13:e0193495.
PubMed Abstract available

DE OLIVEIRA UC, Nishiyama MY Jr, Dos Santos MBV, Santos-da-Silva AP, et al
Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions.
PLoS One. 2018;13:e0193739.
PubMed Abstract available

ZHANG X, Chen D, Xu G, Huang W, et al
Molecular epidemiology and drug resistant mechanism in carbapenem-resistant Klebsiella pneumoniae isolated from pediatric patients in Shanghai, China.
PLoS One. 2018;13:e0194000.
PubMed Abstract available

HARVEY AJ, O'Brien C, Lambshead J, Sheedy JR, et al
Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.
PLoS One. 2018;13:e0193949.
PubMed Abstract available

BEKKER EI, Karabanov DP, Galimov YR, Haag CR, et al
Phylogeography of Daphnia magna Straus (Crustacea: Cladocera) in Northern Eurasia: Evidence for a deep longitudinal split between mitochondrial lineages.
PLoS One. 2018;13:e0194045.
PubMed Abstract available

ZENG L, Kortschak RD, Raison JM, Bertozzi T, et al
Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies.
PLoS One. 2018;13:e0193588.
PubMed Abstract available

RUSU I, Modi A, Vai S, Pilli E, et al
Maternal DNA lineages at the gate of Europe in the 10th century AD.
PLoS One. 2018;13:e0193578.
PubMed Abstract available

AGARAS BC, Iriarte A, Valverde CF
Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.
PLoS One. 2018;13:e0194088.
PubMed Abstract available

XING M, Sun C, Li H, Hu S, et al
Integrated analysis of transcriptome and proteome changes related to the Ogura cytoplasmic male sterility in cabbage.
PLoS One. 2018;13:e0193462.
PubMed Abstract available

BUHNER S, Hahne H, Hartwig K, Li Q, et al
Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients.
PLoS One. 2018;13:e0193943.
PubMed Abstract available

SKEIE JM, Aldrich BT, Goldstein AS, Schmidt GA, et al
Proteomic analysis of corneal endothelial cell-descemet membrane tissues reveals influence of insulin dependence and disease severity in type 2 diabetes mellitus.
PLoS One. 2018;13:e0192287.
PubMed Abstract available

BERG AT, Chakravorty S, Koh S, Grinspan ZM, et al
Why West? Comparisons of clinical, genetic and molecular features of infants with and without spasms.
PLoS One. 2018;13:e0193599.
PubMed Abstract available

MIYAUCHI E, Furuta T, Ohtsuki S, Tachikawa M, et al
Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics.
PLoS One. 2018;13:e0193799.
PubMed Abstract available

HUANG J, Wei H, Li L, Yu S, et al
Transcriptome analysis of nitric oxide-responsive genes in upland cotton (Gossypium hirsutum).
PLoS One. 2018;13:e0192367.
PubMed Abstract available

GOMES VIANA JP, Bohrer Monteiro Siqueira MV, Araujo FL, Grando C, et al
Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
PLoS One. 2018;13:e0192165.
PubMed Abstract available

AUMAILLEY L, Roux-Dalvai F, Kelly I, Droit A, et al
Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein.
PLoS One. 2018;13:e0193170.
PubMed Abstract available

CRONA K
Recombination and peak jumping.
PLoS One. 2018;13:e0193123.
PubMed Abstract available

NEWBERG LA, Chen X, Kodira CD, Zavodszky MI, et al
Computational de novo discovery of distinguishing genes for biological processes and cell types in complex tissues.
PLoS One. 2018;13:e0193067.
PubMed Abstract available

HICKS J, Stuber T, Lantz K, Erdman M, et al
Genomic diversity of Taylorella equigenitalis introduced into the United States from 1978 to 2012.
PLoS One. 2018;13:e0194253.
PubMed Abstract available

MA J, Saghatelian A, Shokhirev MN
The influence of transcript assembly on the proteogenomics discovery of microproteins.
PLoS One. 2018;13:e0194518.
PubMed Abstract available

GELDENHUYS M, Mortlock M, Weyer J, Bezuidt O, et al
A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa.
PLoS One. 2018;13:e0194527.
PubMed Abstract available

LIU C, Ran X, Wang J, Li S, et al
Detection of genomic structural variations in Guizhou indigenous pigs and the comparison with other breeds.
PLoS One. 2018;13:e0194282.
PubMed Abstract available

DONG Y, Sun Y, Qin C
Predicting protein complexes using a supervised learning method combined with local structural information.
PLoS One. 2018;13:e0194124.
PubMed Abstract available

SANCHEZ C, Mazzucchelli G, Lambert C, Comblain F, et al
Comparison of secretome from osteoblasts derived from sclerotic versus non-sclerotic subchondral bone in OA: A pilot study.
PLoS One. 2018;13:e0194591.
PubMed Abstract available

OXUSOFF L, Prea P, Perez Y
A complete logical approach to resolve the evolution and dynamics of mitochondrial genome in bilaterians.
PLoS One. 2018;13:e0194334.
PubMed Abstract available

VISSER JH, Bennett NC, Jansen van Vuuren B
Spatial genetic diversity in the Cape mole-rat, Georychus capensis: Extreme isolation of populations in a subterranean environment.
PLoS One. 2018;13:e0194165.
PubMed Abstract available

CHEN C, Long L, Zhang F, Chen Q, et al
Antifungal activity, main active components and mechanism of Curcuma longa extract against Fusarium graminearum.
PLoS One. 2018;13:e0194284.
PubMed Abstract available

BLANCO-GUILLOT F, Castaneda-Cediel ML, Cruz-Hervert P, Ferreyra-Reyes L, et al
Genotyping and spatial analysis of pulmonary tuberculosis and diabetes cases in the state of Veracruz, Mexico.
PLoS One. 2018;13:e0193911.
PubMed Abstract available

PAROLO S, Marchetti L, Lauria M, Misselbeck K, et al
Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy.
PLoS One. 2018;13:e0194225.
PubMed Abstract available

HAJJEJ A, Almawi WY, Arnaiz-Villena A, Hattab L, et al
The genetic heterogeneity of Arab populations as inferred from HLA genes.
PLoS One. 2018;13:e0192269.
PubMed Abstract available

WILSON AM, van der Nest MA, Wilken PM, Wingfield MJ, et al
Pheromone expression reveals putative mechanism of unisexuality in a saprobic ascomycete fungus.
PLoS One. 2018;13:e0192517.
PubMed Abstract available

SUN X, Stewart DA, Sandhu R, Kirk EL, et al
Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue.
PLoS One. 2018;13:e0193792.
PubMed Abstract available

WEBER KS, Bridgewater LC, Jensen JL, Breakwell DP, et al
Personal microbiome analysis improves student engagement and interest in Immunology, Molecular Biology, and Genomics undergraduate courses.
PLoS One. 2018;13:e0193696.
PubMed Abstract available

PEOPLES LM, Donaldson S, Osuntokun O, Xia Q, et al
Vertically distinct microbial communities in the Mariana and Kermadec trenches.
PLoS One. 2018;13:e0195102.
PubMed Abstract available

SEMERARO R, Orlandini V, Magi A
Xome-Blender: A novel cancer genome simulator.
PLoS One. 2018;13:e0194472.
PubMed Abstract available

STOJANOVA B, Surinova M, Klapste J, Kolarikova V, et al
Adaptive differentiation of Festuca rubra along a climate gradient revealed by molecular markers and quantitative traits.
PLoS One. 2018;13:e0194670.
PubMed Abstract available

CIRILLO E, Kutmon M, Gonzalez Hernandez M, Hooimeijer T, et al
From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results.
PLoS One. 2018;13:e0193515.
PubMed Abstract available

BAMBHROLIYA A, Van Wyhe RD, Kumar S, Debeb BG, et al
Gene set analysis of post-lactational mammary gland involution gene signatures in inflammatory and triple-negative breast cancer.
PLoS One. 2018;13:e0192689.
PubMed Abstract available

HENNEMAN P, Bouman A, Mul A, Knegt L, et al
Widespread domain-like perturbations of DNA methylation in whole blood of Down syndrome neonates.
PLoS One. 2018;13:e0194938.
PubMed Abstract available

JOENVAARA S, Saraswat M, Kuusela P, Saraswat S, et al
Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients.
PLoS One. 2018;13:e0195006.
PubMed Abstract available

CARTMELL KB, Sterba KR, Pickett K, Zapka J, et al
Availability of patient-centered cancer support services: A statewide survey of cancer centers.
PLoS One. 2018;13:e0194649.
PubMed Abstract available

KELLY AC, Ward TJ
Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen.
PLoS One. 2018;13:e0194616.
PubMed Abstract available

DI FEDE M, Biagini M, Cartocci E, Parillo C, et al
Neisseria Heparin Binding Antigen is targeted by the human alternative pathway C3-convertase.
PLoS One. 2018;13:e0194662.
PubMed Abstract available

DEPERI SI, Tagliotti ME, Bedogni MC, Manrique-Carpintero NC, et al
Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs.
PLoS One. 2018;13:e0194398.
PubMed Abstract available

FILIPOVA D, Henry M, Rotshteyn T, Brunn A, et al
Distinct transcriptomic changes in E14.5 mouse skeletal muscle lacking RYR1 or Cav1.1 converge at E18.5.
PLoS One. 2018;13:e0194428.
PubMed Abstract available

DA SILVA M, Noll FB, E Castro ACM
Phylogeographic analysis reveals high genetic structure with uniform phenotypes in the paper wasp Protonectarina sylveirae (Hymenoptera: Vespidae).
PLoS One. 2018;13:e0194424.
PubMed Abstract available

GARRIS HW, Baldwin SA, Taylor J, Gurr DB, et al
Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment.
PLoS One. 2018;13:e0196032.
PubMed Abstract available

ROSLI R, Amiruddin N, Ab Halim MA, Chan PL, et al
Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.
PLoS One. 2018;13:e0194792.
PubMed Abstract available

YANG S, Wang Y, Wang L, Shi Z, et al
RNA-Seq reveals differentially expressed genes affecting polyunsaturated fatty acids percentage in the Huangshan Black chicken population.
PLoS One. 2018;13:e0195132.
PubMed Abstract available

SCHUSTER TM, Setaro SD, Tibbits JFG, Batty EL, et al
Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae).
PLoS One. 2018;13:e0195034.
PubMed Abstract available

CHAI JH, Lee CK, Lee HK, Wong N, et al
Cost-benefit analysis of introducing next-generation sequencing (metagenomic) pathogen testing in the setting of pyrexia of unknown origin.
PLoS One. 2018;13:e0194648.
PubMed Abstract available

JMEL H, Romdhane L, Ben Halima Y, Hechmi M, et al
Pharmacogenetic landscape of Metabolic Syndrome components drug response in Tunisia and comparison with worldwide populations.
PLoS One. 2018;13:e0194842.
PubMed Abstract available

SELA I, Wolf YI, Koonin EV
Estimation of universal and taxon-specific parameters of prokaryotic genome evolution.
PLoS One. 2018;13:e0195571.
PubMed Abstract available

HU Y, Hao X, Chen L, Akhberdi O, et al
Galpha-cAMP/PKA pathway positively regulates pigmentation, chaetoglobosin A biosynthesis and sexual development in Chaetomium globosum.
PLoS One. 2018;13:e0195553.
PubMed Abstract available

KEREN-AVIRAM G, Dachet F, Bagla S, Balan K, et al
Proteomic analysis of human epileptic neocortex predicts vascular and glial changes in epileptic regions.
PLoS One. 2018;13:e0195639.
PubMed Abstract available

ZHOU N, Katz M, Knecht W, Compagno C, et al
Genome dynamics and evolution in yeasts: A long-term yeast-bacteria competition experiment.
PLoS One. 2018;13:e0194911.
PubMed Abstract available

FERREIRA DA SILVA MJ, Kopp GH, Casanova C, Godinho R, et al
Disrupted dispersal and its genetic consequences: Comparing protected and threatened baboon populations (Papio papio) in West Africa.
PLoS One. 2018;13:e0194189.
PubMed Abstract available

MAHMOUD M, Zeng Y, Shirali M, Yin T, et al
Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens.
PLoS One. 2018;13:e0194374.
PubMed Abstract available

GOLIZEH M, Melendez-Pena CE, Ward BJ, Saeed S, et al
Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging.
PLoS One. 2018;13:e0195148.
PubMed Abstract available

UMAIR M, Abbasi BH, Sharif S, Alam MM, et al
High prevalence of G3 rotavirus in hospitalized children in Rawalpindi, Pakistan during 2014.
PLoS One. 2018;13:e0195947.
PubMed Abstract available

LI S, Dou X, Gao R, Ge X, et al
A remark on copy number variation detection methods.
PLoS One. 2018;13:e0196226.
PubMed Abstract available

SILVA AC, Souza AF
Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America.
PLoS One. 2018;13:e0196130.
PubMed Abstract available

MA Y, Gu L, Yang L, Sun C, et al
Identifying artificial selection signals in the chicken genome.
PLoS One. 2018;13:e0196215.
PubMed Abstract available

MENDES CB, Norenburg JL, Solferini VN, Andrade SCS, et al
Hidden diversity: Phylogeography of genus Ototyphlonemertes Diesing, 1863 (Ototyphlonemertidae: Hoplonemertea) reveals cryptic species and high diversity in Chilean populations.
PLoS One. 2018;13:e0195833.
PubMed Abstract available

RODGER YS, Greenbaum G, Silver M, Bar-David S, et al
Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species' global distribution: Combining classical population genetics and network analyses.
PLoS One. 2018;13:e0194901.
PubMed Abstract available

GHORBANI A, Izadpanah K, Dietzgen RG
Changes in maize transcriptome in response to maize Iranian mosaic virus infection.
PLoS One. 2018;13:e0194592.
PubMed Abstract available

URRESTARAZU J, Errea P, Miranda C, Santesteban LG, et al
Genetic diversity of Spanish Prunus domestica L. germplasm reveals a complex genetic structure underlying.
PLoS One. 2018;13:e0195591.
PubMed Abstract available

KHAN G, Ribeiro PM, Bonatelli IAS, Perez MF, et al
Weak population structure and no genetic erosion in Pilosocereus aureispinus: A microendemic and threatened cactus species from eastern Brazil.
PLoS One. 2018;13:e0195475.
PubMed Abstract available

HOLM M, Saraswat M, Joenvaara S, Ristimaki A, et al
Colorectal cancer patients with different C-reactive protein levels and 5-year survival times can be differentiated with quantitative serum proteomics.
PLoS One. 2018;13:e0195354.
PubMed Abstract available

SKOWRON PM, Kropinski AM, Zebrowska J, Janus L, et al
Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.
PLoS One. 2018;13:e0195449.
PubMed Abstract available

TANDON D, Haque MM, R S, Shaikh S, et al
A snapshot of gut microbiota of an adult urban population from Western region of India.
PLoS One. 2018;13:e0195643.
PubMed Abstract available

ZENG J, Garrick D, Dekkers J, Fernando R, et al
A nested mixture model for genomic prediction using whole-genome SNP genotypes.
PLoS One. 2018;13:e0194683.
PubMed Abstract available

GLASSET B, Herbin S, Granier SA, Cavalie L, et al
Bacillus cereus, a serious cause of nosocomial infections: Epidemiologic and genetic survey.
PLoS One. 2018;13:e0194346.
PubMed Abstract available

TSURU M, Ono A, Umeyama H, Takeuchi M, et al
Ubiquitin-dependent proteolysis of CXCL7 leads to posterior longitudinal ligament ossification.
PLoS One. 2018;13:e0196204.
PubMed Abstract available

RAHMAN F, Hassan M, Rosli R, Almousally I, et al
Evolutionary and genomic analysis of the caleosin/peroxygenase (CLO/PXG) gene/protein families in the Viridiplantae.
PLoS One. 2018;13:e0196669.
PubMed Abstract available

RYSKALIYEVA A, Henry C, Miranda G, Faye B, et al
Combining different proteomic approaches to resolve complexity of the milk protein fraction of dromedary, Bactrian camels and hybrids, from different regions of Kazakhstan.
PLoS One. 2018;13:e0197026.
PubMed Abstract available

NEUBAUER PR, Widmann C, Wibberg D, Schroder L, et al
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
PLoS One. 2018;13:e0196797.
PubMed Abstract available

FISCHER L, Rappsilber J
False discovery rate estimation and heterobifunctional cross-linkers.
PLoS One. 2018;13:e0196672.
PubMed Abstract available

MIAO YT, Deng Y, Jia HK, Liu YD, et al
Proteomic analysis of watery saliva secreted by white-backed planthopper, Sogatella furcifera.
PLoS One. 2018;13:e0193831.
PubMed Abstract available

BENOIT JB, Frank DN, Bessesen MT
Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.
PLoS One. 2018;13:e0195860.
PubMed Abstract available

HEBERLING JM, Mason NWH
Are endemics functionally distinct? Leaf traits of native and exotic woody species in a New Zealand forest.
PLoS One. 2018;13:e0196746.
PubMed Abstract available

KLANGNURAK W, Fukuyo T, Rezanujjaman MD, Seki M, et al
Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish.
PLoS One. 2018;13:e0196544.
PubMed Abstract available

KOSTRIKIS LG, Hezka J, Stylianou DC, Kostaki E, et al
HIV-1 transmission networks across Cyprus (2010-2012).
PLoS One. 2018;13:e0195660.
PubMed Abstract available

PUENTE C, Abian-Vicen J, Del Coso J, Lara B, et al
The CYP1A2 -163C>A polymorphism does not alter the effects of caffeine on basketball performance.
PLoS One. 2018;13:e0195943.
PubMed Abstract available

RAINE A, Liljedahl U, Nordlund J
Data quality of whole genome bisulfite sequencing on Illumina platforms.
PLoS One. 2018;13:e0195972.
PubMed Abstract available

MARTINS MP, Gomes EV, Sanches PR, Pedersoli WR, et al
mus-52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability.
PLoS One. 2018;13:e0195871.
PubMed Abstract available

BETIKU OC, Yeoman CJ, Gaylord TG, Americus B, et al
Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout.
PLoS One. 2018;13:e0195967.
PubMed Abstract available

MOHAMED RAMLI N, Giatsis C, Md Yusoff F, Verreth J, et al
Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation.
PLoS One. 2018;13:e0195862.
PubMed Abstract available

RIVERA SF, Vasselon V, Ballorain K, Carpentier A, et al
DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior.
PLoS One. 2018;13:e0195770.
PubMed Abstract available

GOG JR, Lever AML, Skittrall JP
A new method for detecting signal regions in ordered sequences of real numbers, and application to viral genomic data.
PLoS One. 2018;13:e0195763.
PubMed Abstract available

DOLMATOV IY, Afanasyev SV, Boyko AV
Molecular mechanisms of fission in echinoderms: Transcriptome analysis.
PLoS One. 2018;13:e0195836.
PubMed Abstract available

PAQUETTE SJ, Stanford K, Thomas J, Reuter T, et al
Quantitative surveillance of shiga toxins 1 and 2, Escherichia coli O178 and O157 in feces of western-Canadian slaughter cattle enumerated by droplet digital PCR with a focus on seasonality and slaughterhouse location.
PLoS One. 2018;13:e0195880.
PubMed Abstract available

TRAMUTO F, Maida CM, Pojero F, Colomba GME, et al
Case-based surveillance of measles in Sicily during 2012-2017: The changing molecular epidemiology and implications for vaccine strategies.
PLoS One. 2018;13:e0195256.
PubMed Abstract available

SPITSYN VM, Kondakov AV, Bolotov NI, Thi Pham N, et al
DNA barcoding unravels contrasting evolutionary history of two widespread Asian tiger moth species during the Late Pleistocene.
PLoS One. 2018;13:e0194200.
PubMed Abstract available

BRINKMAN NE, Villegas EN, Garland JL, Keely SP, et al
Reducing inherent biases introduced during DNA viral metagenome analyses of municipal wastewater.
PLoS One. 2018;13:e0195350.
PubMed Abstract available

MENOTTA M, Orazi S, Gioacchini AM, Spapperi C, et al
Proteomics and transcriptomics analyses of ataxia telangiectasia cells treated with Dexamethasone.
PLoS One. 2018;13:e0195388.
PubMed Abstract available

CASTILLO H, Li X, Schilkey F, Smith GB, et al
Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation.
PLoS One. 2018;13:e0196472.
PubMed Abstract available

WILLMANN C, Mata X, Hanghoej K, Tonasso L, et al
Oral health status in historic population: Macroscopic and metagenomic evidence.
PLoS One. 2018;13:e0196482.
PubMed Abstract available

DEPRA GC, Graca WJD, Pavanelli CS, Avelino GS, et al
Molecular phylogeny of Planaltina Bohlke (Characidae: Stevardiinae) and comments on the definition and geographic distribution of the genus, with description of a new species.
PLoS One. 2018;13:e0196291.
PubMed Abstract available

ILIE DE, Kusza S, Sauer M, Gavojdian D, et al
Genetic characterization of indigenous goat breeds in Romania and Hungary with a special focus on genetic resistance to mastitis and gastrointestinal parasitism based on 40 SNPs.
PLoS One. 2018;13:e0197051.
PubMed Abstract available

MOYANO E, Martinez-Rivas FJ, Blanco-Portales R, Molina-Hidalgo FJ, et al
Genome-wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria x ananassa fruits.
PLoS One. 2018;13:e0196953.
PubMed Abstract available

YU Z, Boehm CR, Hibberd JM, Abell C, et al
Droplet-based microfluidic analysis and screening of single plant cells.
PLoS One. 2018;13:e0196810.
PubMed Abstract available

ZHANG T, Xu J, Deng S, Zhou F, et al
Core signaling pathways in ovarian cancer stem cell revealed by integrative analysis of multi-marker genomics data.
PLoS One. 2018;13:e0196351.
PubMed Abstract available

DELEYE L, Gansemans Y, De Coninck D, Van Nieuwerburgh F, et al
Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods.
PLoS One. 2018;13:e0196334.
PubMed Abstract available

SELEPE MM, Ceccobelli S, Lasagna E, Kunene NW, et al
Genetic structure of South African Nguni (Zulu) sheep populations reveals admixture with exotic breeds.
PLoS One. 2018;13:e0196276.
PubMed Abstract available

DHARANIPRAGADA P, Vogeti S, Parekh N
iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
PLoS One. 2018;13:e0195334.
PubMed Abstract available

LEMES RB, Nunes K, Carnavalli JEP, Kimura L, et al
Inbreeding estimates in human populations: Applying new approaches to an admixed Brazilian isolate.
PLoS One. 2018;13:e0196360.
PubMed Abstract available

FREITAS AC, Hill JE
Bifidobacteria isolated from vaginal and gut microbiomes are indistinguishable by comparative genomics.
PLoS One. 2018;13:e0196290.
PubMed Abstract available

ZHOU S, Zhang J, Ma F, Tang C, et al
Investigation of lignocellulolytic enzymes during different growth phases of Ganoderma lucidum strain G0119 using genomic, transcriptomic and secretomic analyses.
PLoS One. 2018;13:e0198404.
PubMed Abstract available

YANG L, Gao Q, Dai J, Yuan G, et al
Comparative transcriptome analysis of silkworm, Bombyx mori colleterial gland suggests their functional role in mucous secretion.
PLoS One. 2018;13:e0198077.
PubMed Abstract available

OSAWA M
A repetitive mutation and selection system for bacterial evolution to increase the specific affinity to pancreatic cancer cells.
PLoS One. 2018;13:e0198157.
PubMed Abstract available

PETERSEN DR, Saba LM, Sayin VI, Papagiannakopoulos T, et al
Elevated Nrf-2 responses are insufficient to mitigate protein carbonylation in hepatospecific PTEN deletion mice.
PLoS One. 2018;13:e0198139.
PubMed Abstract available

ROOIJAKKERS BJM, Ikonen MS, Linder MB
Fungal-type carbohydrate binding modules from the coccolithophore Emiliania huxleyi show binding affinity to cellulose and chitin.
PLoS One. 2018;13:e0197875.
PubMed Abstract available

SMITH SA, Brown JW, Walker JF
So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.
PLoS One. 2018;13:e0197433.
PubMed Abstract available

WONG EHC, Dong YY, Coray M, Cortada M, et al
Inner ear exosomes and their potential use as biomarkers.
PLoS One. 2018;13:e0198029.
PubMed Abstract available

FUENTES A, Braswell WE, Ruiz-Arce R, Racelis A, et al
Genetic variation and population structure of Diaphorina citri using cytochrome oxidase I sequencing.
PLoS One. 2018;13:e0198399.
PubMed Abstract available

HARDISON DR, Holland WC, Darius HT, Chinain M, et al
Investigation of ciguatoxins in invasive lionfish from the greater caribbean region: Implications for fishery development.
PLoS One. 2018;13:e0198358.
PubMed Abstract available

FLATAU L, Reitt M, Duttge G, Lenk C, et al
Genomic information and a person's right not to know: A closer look at variations in hypothetical informational preferences in a German sample.
PLoS One. 2018;13:e0198249.
PubMed Abstract available

YOSHINO H, Yamaji F, Ohsawa TA
Genetic structure and dispersal patterns in Limnoria nagatai (Limnoriidae, Isopoda) dwelling in non-buoyant kelps, Eisenia bicyclis and E. arborea, in Japan.
PLoS One. 2018;13:e0198451.
PubMed Abstract available

ZHANG H, Kang H, Su C, Qi Y, et al
Genome-wide identification and expression profile analysis of the NAC transcription factor family during abiotic and biotic stress in woodland strawberry.
PLoS One. 2018;13:e0197892.
PubMed Abstract available

KUWABARA Y, Katayama A, Kurihara S, Orimo H, et al
Immunoproteomic identification of anti-C9 autoimmune antibody in patients with seronegative obstetric antiphospholipid syndrome.
PLoS One. 2018;13:e0198472.
PubMed Abstract available

TORNER K, Nakanishi T, Matsuura T, Kato Y, et al
Genomic integration and ligand-dependent activation of the human estrogen receptor alpha in the crustacean Daphnia magna.
PLoS One. 2018;13:e0198023.
PubMed Abstract available

DIAZ A, Gerard K, Gonzalez-Wevar C, Maturana C, et al
Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: The role of the last glaciation.
PLoS One. 2018;13:e0197611.
PubMed Abstract available

WANG X, Li L, Wei X, Wang Y, et al
Proteomic analysis of the response of Trichinella spiralis muscle larvae to exogenous nitric oxide.
PLoS One. 2018;13:e0198205.
PubMed Abstract available

WINANS GA, Allen MB, Baker J, Lesko E, et al
Dam trout: Genetic variability in Oncorhynchus mykiss above and below barriers in three Columbia River systems prior to restoring migrational access.
PLoS One. 2018;13:e0197571.
PubMed Abstract available

BLANCO RY, Loureiro CL, Villalba JA, Sulbaran YF, et al
Decreasing prevalence of Hepatitis B and absence of Hepatitis C Virus infection in the Warao indigenous population of Venezuela.
PLoS One. 2018;13:e0197662.
PubMed Abstract available

HOLZ PH, Lumsden LF, Druce J, Legione AR, et al
Virus survey in populations of two subspecies of bent-winged bats (Miniopterus orianae bassanii and oceanensis) in south-eastern Australia reveals a high prevalence of diverse herpesviruses.
PLoS One. 2018;13:e0197625.
PubMed Abstract available

SILVA-BRANDAO KL, Peruchi A, Seraphim N, Murad NF, et al
Loci under selection and markers associated with host plant and host-related strains shape the genetic structure of Brazilian populations of Spodoptera frugiperda (Lepidoptera, Noctuidae).
PLoS One. 2018;13:e0197378.
PubMed Abstract available

QIU L, Zhao C, Wang P, Fan S, et al
Genomic structure, expression, and functional characterization of checkpoint kinase 1 from Penaeus monodon.
PLoS One. 2018;13:e0198036.
PubMed Abstract available

GAO B, Peng C, Chen Q, Zhang J, et al
Mitochondrial genome sequencing of a vermivorous cone snail Conus quercinus supports the correlative analysis between phylogenetic relationships and dietary types of Conus species.
PLoS One. 2018;13:e0193053.
PubMed Abstract available

KUNDU S, Cheng Y, Shin M, Manyam G, et al
Bayesian variable selection with graphical structure learning: Applications in integrative genomics.
PLoS One. 2018;13:e0195070.
PubMed Abstract available

CHHABRA V, Anand AS, Baidya AK, Malik SM, et al
Hypobaric hypoxia induced renal damage is mediated by altering redox pathway.
PLoS One. 2018;13:e0195701.
PubMed Abstract available

LANGEN B, Rudqvist N, Spetz J, Helou K, et al
Deconvolution of expression microarray data reveals 131I-induced responses otherwise undetected in thyroid tissue.
PLoS One. 2018;13:e0197911.
PubMed Abstract available

CASTILLO VARDARO JA, Epps CW, Frable BW, Ray C, et al
Identification of a contact zone and hybridization for two subspecies of the American pika (Ochotona princeps) within a single protected area.
PLoS One. 2018;13:e0199032.
PubMed Abstract available

SIVAY MV, Hudelson SE, Wang J, Agyei Y, et al
HIV-1 diversity among young women in rural South Africa: HPTN 068.
PLoS One. 2018;13:e0198999.
PubMed Abstract available

ZHANG W, Sun P, He Q, Shu F, et al
Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice.
PLoS One. 2018;13:e0199077.
PubMed Abstract available

AMORIM PF, Costa WJEM
Multigene phylogeny supports diversification of four-eyed fishes and one-sided livebearers (Cyprinodontiformes: Anablepidae) related to major South American geological events.
PLoS One. 2018;13:e0199201.
PubMed Abstract available

SEKIHARA K, Saitoh K, Yang H, Kawashima H, et al
Low-dose ionizing radiation exposure represses the cell cycle and protein synthesis pathways in in vitro human primary keratinocytes and U937 cell lines.
PLoS One. 2018;13:e0199117.
PubMed Abstract available

CAIRNS KM, Shannon LM, Koler-Matznick J, Ballard JWO, et al
Elucidating biogeographical patterns in Australian native canids using genome wide SNPs.
PLoS One. 2018;13:e0198754.
PubMed Abstract available

GAO Y, Zhang L, Zhao S, Yan Y, et al
Comparative analysis of the male inflorescence transcriptome profiles of an ms22 mutant of maize.
PLoS One. 2018;13:e0199437.
PubMed Abstract available

SALOVSKA B, Janeckova H, Fabrik I, Karlikova R, et al
Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells.
PLoS One. 2018;13:e0199349.
PubMed Abstract available

BEN HAMDA C, Sangeda R, Mwita L, Meintjes A, et al
A common molecular signature of patients with sickle cell disease revealed by microarray meta-analysis and a genome-wide association study.
PLoS One. 2018;13:e0199461.
PubMed Abstract available

SOUZA-SHIBATTA L, Tonini JFR, Abrahao VP, Jarduli LR, et al
Reappraisal of the systematics of Microglanis cottoides (Siluriformes, Pseudopimelodidae), a catfish from southern Brazil.
PLoS One. 2018;13:e0199963.
PubMed Abstract available

CHENG M, Mei B, Zhou Q, Zhang M, et al
Computational analyses of obesity associated loci generated by genome-wide association studies.
PLoS One. 2018;13:e0199987.
PubMed Abstract available

HEIDEN BT, Chen G, Hermann M, Brown RKJ, et al
18F-FDG PET intensity correlates with a hypoxic gene signature and other oncogenic abnormalities in operable non-small cell lung cancer.
PLoS One. 2018;13:e0199970.
PubMed Abstract available

MARETE A, Lund MS, Boichard D, Ramayo-Caldas Y, et al
A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds.
PLoS One. 2018;13:e0199931.
PubMed Abstract available

CRANE NL, Tariel J, Caselle JE, Friedlander AM, et al
Clipperton Atoll as a model to study small marine populations: Endemism and the genomic consequences of small population size.
PLoS One. 2018;13:e0198901.
PubMed Abstract available

CHENG Y, Zhao X, Chen Y, Li Y, et al
Circulating immune complexome analysis identified anti-tubulin-alpha-1c as an inflammation associated autoantibody with promising diagnostic value for Behcet's Disease.
PLoS One. 2018;13:e0199047.
PubMed Abstract available

LI X, Naser SA, Khaled A, Hu H, et al
When old metagenomic data meet newly sequenced genomes, a case study.
PLoS One. 2018;13:e0198773.
PubMed Abstract available

YAN L, Zhao C, Zhang J, Qiu L, et al
Transcriptomic analyses of gastrointestinal function in the "dwarf" and "medium" forms of Sthenoteuthis oualaniensis during sexual maturation.
PLoS One. 2018;13:e0199053.
PubMed Abstract available

SOARES MARTINS T, Catita J, Martins Rosa I, A B da Cruz E Silva O, et al
Exosome isolation from distinct biofluids using precipitation and column-based approaches.
PLoS One. 2018;13:e0198820.
PubMed Abstract available

TRAN L, Hamp T, Rost B
ProfPPIdb: Pairs of physical protein-protein interactions predicted for entire proteomes.
PLoS One. 2018;13:e0199988.
PubMed Abstract available

HAGENAUER MH, Schulmann A, Li JZ, Vawter MP, et al
Inference of cell type content from human brain transcriptomic datasets illuminates the effects of age, manner of death, dissection, and psychiatric diagnosis.
PLoS One. 2018;13:e0200003.
PubMed Abstract available

TEA MM, Tan YY, Staudigl C, Eibl B, et al
Improving comprehension of genetic counseling for hereditary breast and ovarian cancer clients with a visual tool.
PLoS One. 2018;13:e0200559.
PubMed Abstract available

PISAMAI S, Roytrakul S, Phaonakrop N, Jaresitthikunchai J, et al
Proteomic analysis of canine oral tumor tissues using MALDI-TOF mass spectrometry and in-gel digestion coupled with mass spectrometry (GeLC MS/MS) approaches.
PLoS One. 2018;13:e0200619.
PubMed Abstract available

GOSZCZYNSKI D, Molina A, Teran E, Morales-Durand H, et al
Runs of homozygosity in a selected cattle population with extremely inbred bulls: Descriptive and functional analyses revealed highly variable patterns.
PLoS One. 2018;13:e0200069.
PubMed Abstract available

LIU W, Cheng C, Lin Y, XuHan X, et al
Genome-wide identification and characterization of mRNAs and lncRNAs involved in cold stress in the wild banana (Musa itinerans).
PLoS One. 2018;13:e0200002.
PubMed Abstract available

WANG Y, Liu K, Bi, Zhou S, et al
Molecular phylogeography of East Asian Boea clarkeana (Gesneriaceae) in relation to habitat restriction.
PLoS One. 2018;13:e0199780.
PubMed Abstract available

LAUKKANEN L, Kalske A, Muola A, Leimu R, et al
Genetic drift precluded adaptation of an insect seed predator to a novel host plant in a long-term selection experiment.
PLoS One. 2018;13:e0198869.
PubMed Abstract available

ZHANG SY, Olasege BS, Liu DY, Wang QS, et al
The genetic connectedness calculated from genomic information and its effect on the accuracy of genomic prediction.
PLoS One. 2018;13:e0201400.
PubMed Abstract available

TIAN X, Wang Z, Zhang Q, Ci H, et al
Genome-wide transcriptome analysis of the salt stress tolerance mechanism in Rosa chinensis.
PLoS One. 2018;13:e0200938.
PubMed Abstract available

ZOLL J, Verweij PE, Melchers WJG
Discovery and characterization of novel Aspergillus fumigatus mycoviruses.
PLoS One. 2018;13:e0200511.
PubMed Abstract available

YOO B, Greninger P, Stein GT, Egan RK, et al
Potent and selective effect of the mir-10b inhibitor MN-anti-mir10b in human cancer cells of diverse primary disease origin.
PLoS One. 2018;13:e0201046.
PubMed Abstract available

MAZZEO MF, Cacace G, Iovieno P, Massarelli I, et al
Response mechanisms induced by exposure to high temperature in anthers from thermo-tolerant and thermo-sensitive tomato plants: A proteomic perspective.
PLoS One. 2018;13:e0201027.
PubMed Abstract available

CUI K, Wang B, Zhang N, Tu Y, et al
iTRAQ-based quantitative proteomic analysis of alterations in the intestine of Hu sheep under weaning stress.
PLoS One. 2018;13:e0200680.
PubMed Abstract available

CHEN C, Yan JB, Wang HL, Li P, et al
Molecular epidemiology and spatiotemporal dynamics of norovirus associated with sporadic acute gastroenteritis during 2013-2017, Zhoushan Islands, China.
PLoS One. 2018;13:e0200911.
PubMed Abstract available

FEDERMAN S, Donoghue MJ, Daly DC, Eaton DAR, et al
Reconciling species diversity in a tropical plant clade (Canarium, Burseraceae).
PLoS One. 2018;13:e0198882.
PubMed Abstract available

NIU X, Ah-Fong AMV, Lopez LA, Judelson HS, et al
Transcriptomic and proteomic analysis reveals wall-associated and glucan-degrading proteins with potential roles in Phytophthora infestans sexual spore development.
PLoS One. 2018;13:e0198186.
PubMed Abstract available

WANG J, Wang J, Wang X, Li R, et al
Proteomic response of hybrid wild rice to cold stress at the seedling stage.
PLoS One. 2018;13:e0198675.
PubMed Abstract available

METZ ZP, Ding T, Baumler DJ
Using genome-scale metabolic models to compare serovars of the foodborne pathogen Listeria monocytogenes.
PLoS One. 2018;13:e0198584.
PubMed Abstract available

KIM J, Chen B, Bru JL, Huynh E, et al
New findings on SNP variants of human protein L-isoaspartyl methyltransferase that affect catalytic activity, thermal stability, and aggregation.
PLoS One. 2018;13:e0198266.
PubMed Abstract available

KWOK E, Porter M, Korf I, Pasin G, et al
The collaborative effect of scientific meetings: A study of the International Milk Genomics Consortium.
PLoS One. 2018;13:e0201637.
PubMed Abstract available

CHEN YC, Xu C, Zhang JG, Zeng CP, et al
Multivariate analysis of genomics data to identify potential pleiotropic genes for type 2 diabetes, obesity and dyslipidemia using Meta-CCA and gene-based approach.
PLoS One. 2018;13:e0201173.
PubMed Abstract available

ABD EL GHANY M, Sharaf H, Al-Agamy MH, Shibl A, et al
Genomic characterization of NDM-1 and 5, and OXA-181 carbapenemases in uropathogenic Escherichia coli isolates from Riyadh, Saudi Arabia.
PLoS One. 2018;13:e0201613.
PubMed Abstract available

MADDOCK J, Wulaningsih W, Fernandez JC, Ploubidis GB, et al
Associations between body size, nutrition and socioeconomic position in early life and the epigenome: A systematic review.
PLoS One. 2018;13:e0201672.
PubMed Abstract available

SILVA GT, San Blas G, Pecanha WT, Moreira GRP, et al
Phylogeography of the gall-inducing micromoth Eucecidoses minutanus Brethes (Cecidosidae) reveals lineage diversification associated with the Neotropical Peripampasic Orogenic Arc.
PLoS One. 2018;13:e0201251.
PubMed Abstract available

GODINI R, Fallahi H, Ebrahimie E
Network analysis of inflammatory responses to sepsis by neutrophils and peripheral blood mononuclear cells.
PLoS One. 2018;13:e0201674.
PubMed Abstract available

RIVERA-REYES R, Kleppa MJ, Kispert A
Proteomic analysis identifies transcriptional cofactors and homeobox transcription factors as TBX18 binding proteins.
PLoS One. 2018;13:e0200964.
PubMed Abstract available

MAIORANO AM, Lourenco DL, Tsuruta S, Ospina AMT, et al
Assessing genetic architecture and signatures of selection of dual purpose Gir cattle populations using genomic information.
PLoS One. 2018;13:e0200694.
PubMed Abstract available

DOOLEY CT, Ferrer T, Pagan H, O'Corry-Crowe GM, et al
Bridging immunogenetics and immunoproteomics: Model positional scanning library analysis for Major Histocompatibility Complex class II DQ in Tursiops truncatus.
PLoS One. 2018;13:e0201299.
PubMed Abstract available

DINIZ MRV, Paiva ALB, Guerra-Duarte C, Nishiyama MY Jr, et al
An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
PLoS One. 2018;13:e0200628.
PubMed Abstract available

DAVOODI MASTAKANI F, Pagheh G, Rashidi Monfared S, Shams-Bakhsh M, et al
Identification and expression analysis of a microRNA cluster derived from pre-ribosomal RNA in Papaver somniferum L. and Papaver bracteatum L.
PLoS One. 2018;13:e0199673.
PubMed Abstract available

KOWALIK A, Siolek M, Kopczynski J, Krawiec K, et al
BRCA1 founder mutations and beyond in the Polish population: A single-institution BRCA1/2 next-generation sequencing study.
PLoS One. 2018;13:e0201086.
PubMed Abstract available

MESSINA F, Di Corcia T, Ragazzo M, Sanchez Mellado C, et al
Signs of continental ancestry in urban populations of Peru through autosomal STR loci and mitochondrial DNA typing.
PLoS One. 2018;13:e0200796.
PubMed Abstract available

DE ARGOLO EGG, Reis T, Fontes DAT, Goncalves EC, et al
Canine filariasis in the Amazon: Species diversity and epidemiology of these emergent and neglected zoonoses.
PLoS One. 2018;13:e0200419.
PubMed Abstract available

SEGURA-WANG M, Gorzer I, Jaksch P, Puchhammer-Stockl E, et al
Temporal dynamics of the lung and plasma viromes in lung transplant recipients.
PLoS One. 2018;13:e0200428.
PubMed Abstract available

MUSA A, Tripathi S, Kandhavelu M, Dehmer M, et al
Harnessing the biological complexity of Big Data from LINCS gene expression signatures.
PLoS One. 2018;13:e0201937.
PubMed Abstract available

PEREA RAZO CA, Rodriguez Hernandez E, Ponce SIR, Milian Suazo F, et al
Molecular epidemiology of cattle tuberculosis in Mexico through whole-genome sequencing and spoligotyping.
PLoS One. 2018;13:e0201981.
PubMed Abstract available

BERKOVIC B, Coelho N, Gouveia L, Serrao EA, et al
Individual-based genetic analyses support asexual hydrochory dispersal in Zostera noltei.
PLoS One. 2018;13:e0199275.
PubMed Abstract available

ALTAN E, Aiemjoy K, Phan TG, Deng X, et al
Enteric virome of Ethiopian children participating in a clean water intervention trial.
PLoS One. 2018;13:e0202054.
PubMed Abstract available

MCDONALD M, Trost B, Napper S
Conservation of kinase-phosphorylation site pairings: Evidence for an evolutionarily dynamic phosphoproteome.
PLoS One. 2018;13:e0202036.
PubMed Abstract available

CARDOSO YP, Rosso JJ, Mabragana E, Gonzalez-Castro M, et al
A continental-wide molecular approach unraveling mtDNA diversity and geographic distribution of the Neotropical genus Hoplias.
PLoS One. 2018;13:e0202024.
PubMed Abstract available

HUSSAIN M, Iqbal MA, Till BJ, Rahman MU, et al
Identification of induced mutations in hexaploid wheat genome using exome capture assay.
PLoS One. 2018;13:e0201918.
PubMed Abstract available

WATANABE K, Igarashi M, Li X, Nakatani A, et al
Dietary soybean protein ameliorates high-fat diet-induced obesity by modifying the gut microbiota-dependent biotransformation of bile acids.
PLoS One. 2018;13:e0202083.
PubMed Abstract available

FURUZAWA-CARBALLEDA J, Zuniga J, Hernandez-Zaragoza DI, Barquera R, et al
An original Eurasian haplotype, HLA-DRB1*14:54-DQB1*05:03, influences the susceptibility to idiopathic achalasia.
PLoS One. 2018;13:e0201676.
PubMed Abstract available

HUANG Z, Du CX, Pan XD
The use of in-strip digestion for fast proteomic analysis on tear fluid from dry eye patients.
PLoS One. 2018;13:e0200702.
PubMed Abstract available

YANG L, Kong X, Yang S, Dong X, et al
Haplotype diversity in mitochondrial DNA reveals the multiple origins of Tibetan horse.
PLoS One. 2018;13:e0201564.
PubMed Abstract available

DESOUBEAUX G, Chauvin D, Piqueras MDC, Bronson E, et al
Translational proteomic study to address host protein changes during aspergillosis.
PLoS One. 2018;13:e0200843.
PubMed Abstract available

KOMATSU Y, Kasahara K, Inoue T, Lee ST, et al
Molecular epidemiology and clinical features of extended-spectrum beta-lactamase- or carbapenemase-producing Escherichia coli bacteremia in Japan.
PLoS One. 2018;13:e0202276.
PubMed Abstract available

BEDDEK M, Zenboudji-Beddek S, Geniez P, Fathalla R, et al
Comparative phylogeography of amphibians and reptiles in Algeria suggests common causes for the east-west phylogeographic breaks in the Maghreb.
PLoS One. 2018;13:e0201218.
PubMed Abstract available

BORBA JVVB, Tauhata SBF, Oliveira CMA, Ferreira Marques M, et al
Chemoproteomic identification of molecular targets of antifungal prototypes, thiosemicarbazide and a camphene derivative of thiosemicarbazide, in Paracoccidioides brasiliensis.
PLoS One. 2018;13:e0201948.
PubMed Abstract available

SONG L, Ouedraogo JP, Kolbusz M, Nguyen TTM, et al
Efficient genome editing using tRNA promoter-driven CRISPR/Cas9 gRNA in Aspergillus niger.
PLoS One. 2018;13:e0202868.
PubMed Abstract available

LEE M, Kang YS, Seok J
The estimation of probability distribution for factor variables with many categorical values.
PLoS One. 2018;13:e0202547.
PubMed Abstract available

MANIN BO, Drakeley CJ, Chua TH
Mitochondrial variation in subpopulations of Anopheles balabacensis Baisas in Sabah, Malaysia (Diptera: Culicidae).
PLoS One. 2018;13:e0202905.
PubMed Abstract available

CHAN RCH, Lam SSW, Fong FLY, Chan DTW, et al
Optimization of protein extraction and two-dimensional gel electrophoresis profiles for the identification of Cordyceps sinensis and other similar species.
PLoS One. 2018;13:e0202779.
PubMed Abstract available

FERRELLI ML, Pidre ML, Ghiringhelli PD, Torres S, et al
Genomic analysis of an Argentinean isolate of Spodoptera frugiperda granulovirus reveals that various baculoviruses code for Lef-7 proteins with three F-box domains.
PLoS One. 2018;13:e0202598.
PubMed Abstract available

GORI M, Ebranati E, Scaltriti E, Huedo P, et al
High-resolution diffusion pattern of human infections by Salmonella enterica serovar Napoli in Northern Italy explained through phylogeography.
PLoS One. 2018;13:e0202573.
PubMed Abstract available

MONGIARDINO KOCH N, Gauthier JA
Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata.
PLoS One. 2018;13:e0202729.
PubMed Abstract available

DUSSAQ AM, Kennell T Jr, Eustace NJ, Anderson JC, et al
Kinomics toolbox-A web platform for analysis and viewing of kinomic peptide array data.
PLoS One. 2018;13:e0202139.
PubMed Abstract available

ZHANG HY, Zhao ZX, Xu J, Xu P, et al
Population genetic analysis of aquaculture salmonid populations in China using a 57K rainbow trout SNP array.
PLoS One. 2018;13:e0202582.
PubMed Abstract available

HOROKHOVATSKYI Y, Dietrich MA, Lebeda I, Fedorov P, et al
Cryopreservation effects on a viable sperm sterlet (Acipenser ruthenus) subpopulation obtained by a Percoll density gradient method.
PLoS One. 2018;13:e0202514.
PubMed Abstract available

WATANABE N, Kryukov K, Nakagawa S, Takeuchi JS, et al
Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis.
PLoS One. 2018;13:e0202049.
PubMed Abstract available

ARROYO-LAMBAER D, Chapman H, Hale M, Blackburn D, et al
Conservation genetics of two threatened frogs from the Mambilla highlands, Nigeria.
PLoS One. 2018;13:e0202010.
PubMed Abstract available

HAWLITSCHEK O, Fernandez-Gonzalez A, Balmori-de la Puente A, Castresana J, et al
A pipeline for metabarcoding and diet analysis from fecal samples developed for a small semi-aquatic mammal.
PLoS One. 2018;13:e0201763.
PubMed Abstract available

EATON KR, Loxterman JL, Keeley ER
Connections and containers: Using genetic data to understand how watershed evolution and human activities influence cutthroat trout biogeography.
PLoS One. 2018;13:e0202043.
PubMed Abstract available

ZHOU Y, Zhu J, Zhao M, Zhang B, et al
Methylation-level inferences and detection of differential methylation with MeDIP-seq data.
PLoS One. 2018;13:e0201586.
PubMed Abstract available

MA B, Chen J, Mu Y, Xue B, et al
Proteomic analysis of rat serum revealed the effects of chronic sleep deprivation on metabolic, cardiovascular and nervous system.
PLoS One. 2018;13:e0199237.
PubMed Abstract available

SUKAL AC, Kidanemariam DB, Dale JL, Harding RM, et al
Characterization of a novel member of the family Caulimoviridae infecting Dioscorea nummularia in the Pacific, which may represent a new genus of dsDNA plant viruses.
PLoS One. 2018;13:e0203038.
PubMed Abstract available

BOVO S, Di Luca A, Galimberti G, Dall'Olio S, et al
A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds.
PLoS One. 2018;13:e0199649.
PubMed Abstract available

XU BH, Lu YQ, Ye ZW, Zheng QW, et al
Genomics-guided discovery and structure identification of cyclic lipopeptides from the Bacillus siamensis JFL15.
PLoS One. 2018;13:e0202893.
PubMed Abstract available

VALENCIA-MENDEZ O, Rodriguez-Zaragoza FA, Calderon-Aguilera LE, Dominguez-Dominguez O, et al
Gamma-diversity partitioning of gobiid fishes (Teleostei: Gobiidae) ensemble along of Eastern Tropical Pacific: Biological inventory, latitudinal variation and species turnover.
PLoS One. 2018;13:e0202863.
PubMed Abstract available

ALAM M, Neal J, O'Connor K, Kilian A, et al
Ultra-high-throughput DArTseq-based silicoDArT and SNP markers for genomic studies in macadamia.
PLoS One. 2018;13:e0203465.
PubMed Abstract available

YU D, He J, Zhang E, Wang P, et al
Investigation and source-tracing of an anthrax outbreak in Gansu Province, China.
PLoS One. 2018;13:e0203267.
PubMed Abstract available

CURRAN AM, Scott-Boyer MP, Kaput J, Ryan MF, et al
A proteomic signature that reflects pancreatic beta-cell function.
PLoS One. 2018;13:e0202727.
PubMed Abstract available

JIMENEZ-SILVA CL, Carreno MF, Ortiz-Baez AS, Rey LA, et al
Evolutionary history and spatio-temporal dynamics of dengue virus serotypes in an endemic region of Colombia.
PLoS One. 2018;13:e0203090.
PubMed Abstract available

PULIDO CM, Redondo-Sama G, Sorde-Marti T, Flecha R, et al
Social impact in social media: A new method to evaluate the social impact of research.
PLoS One. 2018;13:e0203117.
PubMed Abstract available

LI X, Cui L, Li Y, Zhu L, et al
Prevalence and geographical variation of Factor V Leiden in patients with cerebral venous thrombosis: A meta-analysis.
PLoS One. 2018;13:e0203309.
PubMed Abstract available

SYLVESTRE TF, Cavalcante RS, da Silva JF, Paniago AMM, et al
Serological proteomic biomarkers to identify Paracoccidioides species and risk of relapse.
PLoS One. 2018;13:e0202804.
PubMed Abstract available

ZINNER D, Atickem A, Beehner JC, Bekele A, et al
Phylogeography, mitochondrial DNA diversity, and demographic history of geladas (Theropithecus gelada).
PLoS One. 2018;13:e0202303.
PubMed Abstract available

SWIERCZ A, Frohmberg W, Kierzynka M, Wojciechowski P, et al
GRASShopPER-An algorithm for de novo assembly based on GPU alignments.
PLoS One. 2018;13:e0202355.
PubMed Abstract available

BAHBAHANI H, Afana A, Wragg D
Genomic signatures of adaptive introgression and environmental adaptation in the Sheko cattle of southwest Ethiopia.
PLoS One. 2018;13:e0202479.
PubMed Abstract available

KIM J, Kwak HR, Kim M, Seo JK, et al
Phylogeographic analysis of the full genome of Sweepovirus to trace virus dispersal and introduction to Korea.
PLoS One. 2018;13:e0202174.
PubMed Abstract available

BOSSE M, Heuwieser A, Heinzel A, Lukas A, et al
Biomarker panels for characterizing microbial community biofilm formation as composite molecular process.
PLoS One. 2018;13:e0202032.
PubMed Abstract available

NAGORSKI J, Allen GI
Genomic region detection via Spatial Convex Clustering.
PLoS One. 2018;13:e0203007.
PubMed Abstract available

BIENKOWSKI AO, Orlova-Bienkowskaja MJ
Alien leaf beetles (Coleoptera, Chrysomelidae) of European Russia and some general tendencies of leaf beetle invasions.
PLoS One. 2018;13:e0203561.
PubMed Abstract available

ALBASSAM A, Alshammari S, Ouda G, Koshy S, et al
Knowledge, perceptions and confidence of physicians and pharmacists towards pharmacogenetics practice in Kuwait.
PLoS One. 2018;13:e0203033.
PubMed Abstract available

PETRONE P, Pucci P, Vergara A, Amoresano A, et al
A hypothesis of sudden body fluid vaporization in the 79 AD victims of Vesuvius.
PLoS One. 2018;13:e0203210.
PubMed Abstract available

MICHALOUDI E, Papakostas S, Stamou G, Nedela V, et al
Reverse taxonomy applied to the Brachionus calyciflorus cryptic species complex: Morphometric analysis confirms species delimitations revealed by molecular phylogenetic analysis and allows the (re)description of four species.
PLoS One. 2018;13:e0203168.
PubMed Abstract available

LAU AYT, Cheng X, Cheng CK, Nong W, et al
Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea.
PLoS One. 2018;13:e0198234.
PubMed Abstract available

ROMA L, Cozzolino S, Schluter PM, Scopece G, et al
The complete plastid genomes of Ophrys iricolor and O. sphegodes (Orchidaceae) and comparative analyses with other orchids.
PLoS One. 2018;13:e0204174.
PubMed Abstract available

JAFARI M, Akram W, Pang Y, Ahmad A, et al
Genetic diversity and biogeography of T. officinale inferred from multi locus sequence typing approach.
PLoS One. 2018;13:e0203275.
PubMed Abstract available

MEKONNEN A, Merker M, Collins JM, Addise D, et al
Molecular epidemiology and drug resistance patterns of Mycobacterium tuberculosis complex isolates from university students and the local community in Eastern Ethiopia.
PLoS One. 2018;13:e0198054.
PubMed Abstract available

OBODAI E, Odoom JK, Adiku T, Goka B, et al
The significance of human respiratory syncytial virus (HRSV) in children from Ghana with acute lower respiratory tract infection: A molecular epidemiological analysis, 2006 and 2013-2014.
PLoS One. 2018;13:e0203788.
PubMed Abstract available

LI B, Liao HM, Liu H, Tsai S, et al
Comparative genomics, infectivity and cytopathogenicity of Zika viruses produced by acutely and persistently infected human hematopoietic cell lines.
PLoS One. 2018;13:e0203331.
PubMed Abstract available

SHARMA R, Singh G, Bhattacharya S, Singh A, et al
Comparative transcriptome meta-analysis of Arabidopsis thaliana under drought and cold stress.
PLoS One. 2018;13:e0203266.
PubMed Abstract available

SIOOFY-KHOJINE AB, Oikarinen S, Honkanen H, Huhtala H, et al
Molecular epidemiology of enteroviruses in young children at increased risk of type 1 diabetes.
PLoS One. 2018;13:e0201959.
PubMed Abstract available

HIBBARD TN, Andrade-Diaz MS, Diaz-Gomez JM
But they move! Vicariance and dispersal in southern South America: Using two methods to reconstruct the biogeography of a clade of lizards endemic to South America.
PLoS One. 2018;13:e0202339.
PubMed Abstract available

YILDIRIM Y, Anderson MJ, Hansson B, Patel S, et al
Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand.
PLoS One. 2018;13:e0202197.
PubMed Abstract available

OUCHENE-KHELIFI NA, Lafri M, Pompanon F, Ouhrouch A, et al
Genetic homogeneity of North-African goats.
PLoS One. 2018;13:e0202196.
PubMed Abstract available

WHAITE AD, Wang T, Macdonald J, Cummins SF, et al
Major ampullate silk gland transcriptomes and fibre proteomes of the golden orb-weavers, Nephila plumipes and Nephila pilipes (Araneae: Nephilidae).
PLoS One. 2018;13:e0204243.
PubMed Abstract available

TROST N, Rempel E, Ermakova O, Tamirisa S, et al
WEADE: A workflow for enrichment analysis and data exploration.
PLoS One. 2018;13:e0204016.
PubMed Abstract available

KAVUNGA-MEMBO H, Nkwembe E, Simulundu E, Karhemere S, et al
Epidemiology of circulating human influenza viruses from the Democratic Republic of Congo, 2015.
PLoS One. 2018;13:e0203995.
PubMed Abstract available

VALDES A, Zhao H, Pettersson U, Lind SB, et al
Time-resolved proteomics of adenovirus infected cells.
PLoS One. 2018;13:e0204522.
PubMed Abstract available

HUANG QF, Van Keer J, Zhang ZY, Trenson S, et al
Urinary proteomic signatures associated with beta-blockade and heart rate in heart transplant recipients.
PLoS One. 2018;13:e0204439.
PubMed Abstract available

HU T, Wei Q, Wang W, Hu H, et al
Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus).
PLoS One. 2018;13:e0204137.
PubMed Abstract available

KUROBE T, Lehman PW, Hammock BG, Bolotaolo MB, et al
Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA.
PLoS One. 2018;13:e0203953.
PubMed Abstract available

CHEN P, He G, Zou X, Wang M, et al
Forensic characterization and genetic polymorphisms of 19 X-chromosomal STRs in 1344 Han Chinese individuals and comprehensive population relationship analyses among 20 Chinese groups.
PLoS One. 2018;13:e0204286.
PubMed Abstract available

PILIPENKO AS, Trapezov RO, Cherdantsev SV, Babenko VN, et al
Maternal genetic features of the Iron Age Tagar population from Southern Siberia (1st millennium BC).
PLoS One. 2018;13:e0204062.
PubMed Abstract available

SARI E, Bhadauria V, Ramsay L, Borhan MH, et al
Defense responses of lentil (Lens culinaris) genotypes carrying non-allelic ascochyta blight resistance genes to Ascochyta lentis infection.
PLoS One. 2018;13:e0204124.
PubMed Abstract available

LIM JH, Lee CH, Kim KY, Jung HY, et al
Novel urinary exosomal biomarkers of acute T cell-mediated rejection in kidney transplant recipients: A cross-sectional study.
PLoS One. 2018;13:e0204204.
PubMed Abstract available

YOON SH, Lee W, Ahn H, Caetano-Anolles K, et al
Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives.
PLoS One. 2018;13:e0203917.
PubMed Abstract available

MENDOZA Y, Garcia-Morales C, Bello G, Garrido-Rodriguez D, et al
Evolutionary history and spatiotemporal dynamics of the HIV-1 subtype B epidemic in Guatemala.
PLoS One. 2018;13:e0203916.
PubMed Abstract available

ASHRAFZADEH MR, Djan M, Szendrei L, Paulauskas A, et al
Large-scale mitochondrial DNA analysis reveals new light on the phylogeography of Central and Eastern-European Brown hare (Lepus europaeus Pallas, 1778).
PLoS One. 2018;13:e0204653.
PubMed Abstract available

IM JH, Lazzaro BP
Population genetic analysis of autophagy and phagocytosis genes in Drosophila melanogaster and D. simulans.
PLoS One. 2018;13:e0205024.
PubMed Abstract available

GOKMEN-POLAR Y, True JD, Vieth E, Gu Y, et al
Quantitative phosphoproteomic analysis identifies novel functional pathways of tumor suppressor DLC1 in estrogen receptor positive breast cancer.
PLoS One. 2018;13:e0204658.
PubMed Abstract available

STRILLACCI MG, Gorla E, Cozzi MC, Vevey M, et al
A copy number variant scan in the autochthonous Valdostana Red Pied cattle breed and comparison with specialized dairy populations.
PLoS One. 2018;13:e0204669.
PubMed Abstract available

PEDERSEN MK, Andersen AB, Folkvardsen DB, Rasmussen EM, et al
Set-up and validation of mycobacterial interspersed repetitive unit-variable number of tandem repeat (MIRU-VNTR) analysis of Mycobacterium tuberculosis using BioNumerics software.
PLoS One. 2018;13:e0205336.
PubMed Abstract available

FONSECA PAS, Id-Lahoucine S, Reverter A, Medrano JF, et al
Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle.
PLoS One. 2018;13:e0205295.
PubMed Abstract available

SHEPHERD LD, Bulgarella M, de Lange PJ
Genetic structuring of the coastal herb Arthropodium cirratum (Asparagaceae) is shaped by low gene flow, hybridization and prehistoric translocation.
PLoS One. 2018;13:e0204943.
PubMed Abstract available

LEY AC, Nissen J, Wolk A, Roser M, et al
Glacial refugia and speciation in a group of wind-pollinated and -dispersed, endemic Alpine species of Helictotrichon (Poaceae).
PLoS One. 2018;13:e0205354.
PubMed Abstract available

DOS SANTOS JUNIOR ACM, Ricart CAO, Pontes AH, Fontes W, et al
Proteome analysis of Phytomonas serpens, a phytoparasite of medical interest.
PLoS One. 2018;13:e0204818.
PubMed Abstract available

MAHMOUD AI, Galdos FX, Dinan KA, Jedrychowski MP, et al
Apolipoprotein E is a pancreatic extracellular factor that maintains mature beta-cell gene expression.
PLoS One. 2018;13:e0204595.
PubMed Abstract available

CALLISTER SJ, McCue LA, Boaro AA, LaMarche B, et al
Identification of metabolite and protein explanatory variables governing microbiome establishment and re-establishment within a cellulose-degrading anaerobic bioreactor.
PLoS One. 2018;13:e0204831.
PubMed Abstract available

PLAYE B, Azencott CA, Stoven V
Efficient multi-task chemogenomics for drug specificity prediction.
PLoS One. 2018;13:e0204999.
PubMed Abstract available

VAN TREUREN T, Vishwanatha JK
CRISPR deletion of MIEN1 in breast cancer cells.
PLoS One. 2018;13:e0204976.
PubMed Abstract available

VIRET A, Tsaparis D, Tsigenopoulos CS, Berrebi P, et al
Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers.
PLoS One. 2018;13:e0203866.
PubMed Abstract available

LU S, Fan X, Chen L, Lu X, et al
A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways.
PLoS One. 2018;13:e0203871.
PubMed Abstract available

LEE JZ, Everroad RC, Karaoz U, Detweiler AM, et al
Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat.
PLoS One. 2018;13:e0202792.
PubMed Abstract available

PERLA V, Nadimi M, Reddy R, Hankins GR, et al
Effect of ghost pepper on cell proliferation, apoptosis, senescence and global proteomic profile in human renal adenocarcinoma cells.
PLoS One. 2018;13:e0206183.
PubMed Abstract available

ZHANG S, Zheng C, Yao S, Wang Z, et al
Proteomic analysis of human prostate cancer PC-3M-1E8 cells and PC-3M-2B4 cells of same origin but with different metastatic potential.
PLoS One. 2018;13:e0206139.
PubMed Abstract available

LEA MV, Syring J, Jennings T, Cronn R, et al
Development of nuclear microsatellite loci for Pinus albicaulis Engelm. (Pinaceae), a conifer of conservation concern.
PLoS One. 2018;13:e0205423.
PubMed Abstract available

SHARMA A, Manolakos ES
Multi-criteria protein structure comparison and structural similarities analysis using pyMCPSC.
PLoS One. 2018;13:e0204587.
PubMed Abstract available

HASAN MM, Kurata H
GPSuc: Global Prediction of Generic and Species-specific Succinylation Sites by aggregating multiple sequence features.
PLoS One. 2018;13:e0200283.
PubMed Abstract available

THAKUR M, Fernandes M, Sathyakumar S, Singh SK, et al
Understanding the cryptic introgression and mixed ancestry of Red Junglefowl in India.
PLoS One. 2018;13:e0204351.
PubMed Abstract available

CHEUNG NJ, Yu W
De novo protein structure prediction using ultra-fast molecular dynamics simulation.
PLoS One. 2018;13:e0205819.
PubMed Abstract available

ISMAIL NIB, Kato Y, Matsuura T, Watanabe H, et al
Generation of white-eyed Daphnia magna mutants lacking scarlet function.
PLoS One. 2018;13:e0205609.
PubMed Abstract available

NICHOLSON TL, Brunelle BW, Bayles DO, Alt DP, et al
Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates.
PLoS One. 2018;13:e0205700.
PubMed Abstract available

BOVO S, Ribani A, Utzeri VJ, Schiavo G, et al
Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature.
PLoS One. 2018;13:e0205575.
PubMed Abstract available

MINOUDI S, Papapetridis I, Karaiskou N, Chatzinikos E, et al
Genetic analyses of brown hare (Lepus europaeus) support limited migration and translocation of Greek populations.
PLoS One. 2018;13:e0206327.
PubMed Abstract available

ABRAMOWICZ A, Marczak L, Wojakowska A, Zapotoczny S, et al
Harmonization of exosome isolation from culture supernatants for optimized proteomics analysis.
PLoS One. 2018;13:e0205496.
PubMed Abstract available

BRIQUET S, Ourimi A, Pionneau C, Bernardes J, et al
Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation.
PLoS One. 2018;13:e0205596.
PubMed Abstract available

KORDBACHEH A, Wallace RL, Walsh EJ
Evidence supporting cryptic species within two sessile microinvertebrates, Limnias melicerta and L. ceratophylli (Rotifera, Gnesiotrocha).
PLoS One. 2018;13:e0205203.
PubMed Abstract available

BOUALLEGUI Y, Ben Younes R, Oueslati R, Sheehan D, et al
Redox proteomic insights into involvement of clathrin-mediated endocytosis in silver nanoparticles toxicity to Mytilus galloprovincialis.
PLoS One. 2018;13:e0205765.
PubMed Abstract available

BOEHMER T, Vogler AJ, Thomas A, Sauer S, et al
Phenotypic characterization and whole genome analysis of extended-spectrum beta-lactamase-producing bacteria isolated from dogs in Germany.
PLoS One. 2018;13:e0206252.
PubMed Abstract available

XU D, Chen H, Aci M, Pan Y, et al
De Novo assembly, characterization and development of EST-SSRs from Bletilla striata transcriptomes profiled throughout the whole growing period.
PLoS One. 2018;13:e0205954.
PubMed Abstract available

OSTBYE K, Ostbye E, Lien AM, Lee LR, et al
Morphology and life history divergence in cave and surface populations of Gammarus lacustris (L.).
PLoS One. 2018;13:e0205556.
PubMed Abstract available

ZABECK H, Dienemann H, Hoffmann H, Pfannschmidt J, et al
Molecular signatures in IASLC/ATS/ERS classified growth patterns of lung adenocarcinoma.
PLoS One. 2018;13:e0206132.
PubMed Abstract available

MA Z, Wang P, Gao Z, Wang R, et al
Ensemble of machine learning algorithms using the stacked generalization approach to estimate the warfarin dose.
PLoS One. 2018;13:e0205872.
PubMed Abstract available

LU Z, Shi P, You H, Liu Y, et al
Transcriptomic analysis of the salivary gland of medicinal leech Hirudo nipponia.
PLoS One. 2018;13:e0205875.
PubMed Abstract available

MEYER AN, Gallo LH, Ko J, Cardenas G, et al
Oncogenic mutations in IKKbeta function through global changes induced by K63-linked ubiquitination and result in autocrine stimulation.
PLoS One. 2018;13:e0206014.
PubMed Abstract available

NEPARACZKI E, Maroti Z, Kalmar T, Kocsy K, et al
Mitogenomic data indicate admixture components of Central-Inner Asian and Srubnaya origin in the conquering Hungarians.
PLoS One. 2018;13:e0205920.
PubMed Abstract available

WYMAN SK, Avila-Herrera A, Nayfach S, Pollard KS, et al
A most wanted list of conserved microbial protein families with no known domains.
PLoS One. 2018;13:e0205749.
PubMed Abstract available

CHEN L, Wang J, Jiang P, Ren F, et al
Alteration of the colostrum whey proteome in mothers with gestational hypothyroidism.
PLoS One. 2018;13:e0205987.
PubMed Abstract available

DHAGE S, Ernlund A, Ruggles K, Axelrod D, et al
A genomic ruler to assess oncogenic transition between breast tumor and stroma.
PLoS One. 2018;13:e0205602.
PubMed Abstract available

BISWAL DK, Roychowdhury T, Pandey P, Tandon V, et al
De novo genome and transcriptome analyses provide insights into the biology of the trematode human parasite Fasciolopsis buski.
PLoS One. 2018;13:e0205570.
PubMed Abstract available

SUMABAT LG, Kemerait RC Jr, Kim DK, Mehta YR, et al
Clonality and geographic structure of host-specialized populations of Corynespora cassiicola causing emerging target spot epidemics in the southeastern United States.
PLoS One. 2018;13:e0205849.
PubMed Abstract available

DEATHERAGE KAISER BL, Hill KK, Smith TJ, Williamson CHD, et al
Proteomic analysis of four Clostridium botulinum strains identifies proteins that link biological responses to proteomic signatures.
PLoS One. 2018;13:e0205586.
PubMed Abstract available

DAI L, Hao Q, Mao L
Morphological diversity of Quercus fossil pollen in the northern South China Sea during the last glacial maximum and its paleoclimatic implication.
PLoS One. 2018;13:e0205246.
PubMed Abstract available

VENKATESAN A, Tagny Ngompe G, Hassouni NE, Chentli I, et al
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy.
PLoS One. 2018;13:e0198270.
PubMed Abstract available

SCHILDE LM, Kosters S, Steinbach S, Schork K, et al
Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research.
PLoS One. 2018;13:e0206478.
PubMed Abstract available

KORNEJ J, Buttner P, Hammer E, Engelmann B, et al
Circulating proteomic patterns in AF related left atrial remodeling indicate involvement of coagulation and complement cascade.
PLoS One. 2018;13:e0198461.
PubMed Abstract available

SHEVCHENKO A, Schuhmann A, Thomas H, Wetzel G, et al
Fine Endmesolithic fish caviar meal discovered by proteomics in foodcrusts from archaeological site Friesack 4 (Brandenburg, Germany).
PLoS One. 2018;13:e0206483.
PubMed Abstract available

SOLIS-REYES S, Avino M, Poon A, Kari L, et al
An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes.
PLoS One. 2018;13:e0206409.
PubMed Abstract available

BRITO TL, Campos AB, Bastiaan von Meijenfeldt FA, Daniel JP, et al
The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei.
PLoS One. 2018;13:e0200437.
PubMed Abstract available

BERLE M, Ghila L, Vethe H, Chaudhry A, et al
Novel protein signatures suggest progression to muscular invasiveness in bladder cancer.
PLoS One. 2018;13:e0206475.
PubMed Abstract available

WU P, Dai G, Chen F, Chen L, et al
Transcriptome profile analysis of leg muscle tissues between slow- and fast-growing chickens.
PLoS One. 2018;13:e0206131.
PubMed Abstract available

SMITZ N, Jouvenet O, Ambwene Ligate F, Crosmary WG, et al
A genome-wide data assessment of the African lion (Panthera leo) population genetic structure and diversity in Tanzania.
PLoS One. 2018;13:e0205395.
PubMed Abstract available

WANG XH, Halling RE, Hofstetter V, Lebel T, et al
Phylogeny, biogeography and taxonomic re-assessment of Multifurca (Russulaceae, Russulales) using three-locus data.
PLoS One. 2018;13:e0205840.
PubMed Abstract available

ZACHUT M, Kra G, Moallem U, Livshitz L, et al
Characterization of the endocannabinoid system in subcutaneous adipose tissue in periparturient dairy cows and its association to metabolic profiles.
PLoS One. 2018;13:e0205996.
PubMed Abstract available

CHALLA GS, Li W
De novo assembly of wheat root transcriptomes and transcriptional signature of longitudinal differentiation.
PLoS One. 2018;13:e0205582.
PubMed Abstract available

CHEN JN, Samadi S, Chen WJ
Rhodopsin gene evolution in early teleost fishes.
PLoS One. 2018;13:e0206918.
PubMed Abstract available

CHEN HM, Lee LC, Hu KY, Tsai WJ, et al
The application of post-translational modification oriented serum proteomics to assess experimental diabetes with complications.
PLoS One. 2018;13:e0206509.
PubMed Abstract available

ADU KT, Wilson R, Nichols DS, Baker AL, et al
Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress.
PLoS One. 2018;13:e0206317.
PubMed Abstract available

CORDOVA-PALOMERA A, Palma-Gudiel H, Fores-Martos J, Tabares-Seisdedos R, et al
Epigenetic outlier profiles in depression: A genome-wide DNA methylation analysis of monozygotic twins.
PLoS One. 2018;13:e0207754.
PubMed Abstract available

LI WY, Chen M, Huang SW, Jen IA, et al
Molecular epidemiology of HIV-1 infection among men who have sex with men in Taiwan from 2013 to 2015.
PLoS One. 2018;13:e0202622.
PubMed Abstract available

MANNA S, Dunne EM, Ortika BD, Pell CL, et al
Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene.
PLoS One. 2018;13:e0206622.
PubMed Abstract available

REED JM, Olson S, Brees DF, Griffin CE, et al
Coordinated regulation of transcription by CcpA and the Staphylococcus aureus two-component system HptRS.
PLoS One. 2018;13:e0207161.
PubMed Abstract available

KARLSSON R, Gonzales-Siles L, Gomila M, Busquets A, et al
Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics.
PLoS One. 2018;13:e0208804.
PubMed Abstract available

LAWRENCE YA, Dangott LJ, Rodrigues-Hoffmann A, Steiner JM, et al
Proteomic analysis of liver tissue from dogs with chronic hepatitis.
PLoS One. 2018;13:e0208394.
PubMed Abstract available

CARVALHO AMRS, Mendes TAO, Coelho EAF, Duarte MC, et al
New antigens for the serological diagnosis of human visceral leishmaniasis identified by immunogenomic screening.
PLoS One. 2018;13:e0209599.
PubMed Abstract available

PAPIEZ A, Azimzadeh O, Azizova T, Moseeva M, et al
Integrative multiomics study for validation of mechanisms in radiation-induced ischemic heart disease in Mayak workers.
PLoS One. 2018;13:e0209626.
PubMed Abstract available

TOOR A, Culibrk L, Singhera GK, Moon KM, et al
Transcriptomic and proteomic host response to Aspergillus fumigatus conidia in an air-liquid interface model of human bronchial epithelium.
PLoS One. 2018;13:e0209652.
PubMed Abstract available

DUBIN RF, Whooley M, Pico A, Ganz P, et al
Proteomic analysis of heart failure hospitalization among patients with chronic kidney disease: The Heart and Soul Study.
PLoS One. 2018;13:e0208042.
PubMed Abstract available

January 2017

WEI HS, Li KB, Zhang S, Cao YZ, et al
Identification of candidate chemosensory genes by transcriptome analysis in Loxostege sticticalis Linnaeus.
PLoS One. 2017;12:e0174036.
PubMed Abstract available

BENNETT EA, Champlot S, Peters J, Arbuckle BS, et al
Taming the late Quaternary phylogeography of the Eurasiatic wild ass through ancient and modern DNA.
PLoS One. 2017;12:e0174216.
PubMed Abstract available

KANT R, Palva A, von Ossowski I
An in silico pan-genomic probe for the molecular traits behind Lactobacillus ruminis gut autochthony.
PLoS One. 2017;12:e0175541.
PubMed Abstract available

MIRANDA EA, Ferreira KM, Carvalho AT, Martins CF, et al
Pleistocene climate changes shaped the population structure of Partamona seridoensis (Apidae, Meliponini), an endemic stingless bee from the Neotropical dry forest.
PLoS One. 2017;12:e0175725.
PubMed Abstract available

HITZ BC, Rowe LD, Podduturi NR, Glick DI, et al
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
PLoS One. 2017;12:e0175310.
PubMed Abstract available

PARDESHI P, Rao KK, Balaji PV
Rv3634c from Mycobacterium tuberculosis H37Rv encodes an enzyme with UDP-Gal/Glc and UDP-GalNAc 4-epimerase activities.
PLoS One. 2017;12:e0175193.
PubMed Abstract available

CARVAJAL-RODRIGUEZ A
HacDivSel: Two new methods (haplotype-based and outlier-based) for the detection of divergent selection in pairs of populations.
PLoS One. 2017;12:e0175944.
PubMed Abstract available

SPONCHIADO M, Gomes NS, Fontes PK, Martins T, et al
Pre-hatching embryo-dependent and -independent programming of endometrial function in cattle.
PLoS One. 2017;12:e0175954.
PubMed Abstract available

DE CARVALHO DB, Congrains C, Chahad-Ehlers S, Pinotti H, et al
Differential transcriptome analysis supports Rhodnius montenegrensis and Rhodnius robustus (Hemiptera, Reduviidae, Triatominae) as distinct species.
PLoS One. 2017;12:e0174997.
PubMed Abstract available

PASSAMANI LZ, Barbosa RR, Reis RS, Heringer AS, et al
Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots.
PLoS One. 2017;12:e0176076.
PubMed Abstract available

DAGAMAC NHA, Rojas C, Novozhilov YK, Moreno GH, et al
Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes).
PLoS One. 2017;12:e0174825.
PubMed Abstract available

BEN-LULU S, Ziv T, Weisman-Shomer P, Benhar M, et al
Nitrosothiol-Trapping-Based Proteomic Analysis of S-Nitrosylation in Human Lung Carcinoma Cells.
PLoS One. 2017;12:e0169862.
PubMed Abstract available

FRUZANGOHAR M, Ebrahimie E, Adelson DL
A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data.
PLoS One. 2017;12:e0170486.
PubMed Abstract available

NKUIPOU-KENFACK E, Schanstra JP, Bajwa S, Pejchinovski M, et al
The use of urinary proteomics in the assessment of suitability of mouse models for ageing.
PLoS One. 2017;12:e0166875.
PubMed Abstract available

KIRICHENKO N, Triberti P, Ohshima I, Haran J, et al
From east to west across the Palearctic: Phylogeography of the invasive lime leaf miner Phyllonorycter issikii (Lepidoptera: Gracillariidae) and discovery of a putative new cryptic species in East Asia.
PLoS One. 2017;12:e0171104.
PubMed Abstract available

PEREZ T, Fernandez M, Hammer SE, Dominguez A, et al
Multilocus Intron Trees Reveal Extensive Male-Biased Homogenization of Ancient Populations of Chamois (Rupicapra spp.) across Europe during Late Pleistocene.
PLoS One. 2017;12:e0170392.
PubMed Abstract available

TRAYKOVA D, Schneider B, Chojkier M, Buck M, et al
Blood Microbiome Quantity and the Hyperdynamic Circulation in Decompensated Cirrhotic Patients.
PLoS One. 2017;12:e0169310.
PubMed Abstract available

SAGULENKO E, Nouwens A, Webb RI, Green K, et al
Nuclear Pore-Like Structures in a Compartmentalized Bacterium.
PLoS One. 2017;12:e0169432.
PubMed Abstract available

ANGULO DF, Amarilla LD, Anton AM, Sosa V, et al
Colonization in North American Arid Lands: The Journey of Agarito (Berberis trifoliolata) Revealed by Multilocus Molecular Data and Packrat Midden Fossil Remains.
PLoS One. 2017;12:e0168933.
PubMed Abstract available

PORTE B, Chatelain C, Hardouin J, Derambure C, et al
Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice.
PLoS One. 2017;12:e0171048.
PubMed Abstract available

NANDAN D, Thomas SA, Nguyen A, Moon KM, et al
Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture.
PLoS One. 2017;12:e0170068.
PubMed Abstract available

MSALYA G, Kim ES, Laisser EL, Kipanyula MJ, et al
Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses.
PLoS One. 2017;12:e0171088.
PubMed Abstract available

VOROS J, Marton O, Schmidt BR, Gal JT, et al
Surveying Europe's Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA.
PLoS One. 2017;12:e0170945.
PubMed Abstract available

DOS SANTOS MD, Kretschmer R, Frankl-Vilches C, Bakker A, et al
Comparative Cytogenetics between Two Important Songbird, Models: The Zebra Finch and the Canary.
PLoS One. 2017;12:e0170997.
PubMed Abstract available

O'FARRELL AC, Evans R, Silvola JM, Miller IS, et al
A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate.
PLoS One. 2017;12:e0169964.
PubMed Abstract available

LUND KT, Riaz S, Walker MA
Population Structure, Diversity and Reproductive Mode of the Grape Phylloxera (Daktulosphaira vitifoliae) across Its Native Range.
PLoS One. 2017;12:e0170678.
PubMed Abstract available

YOTOVA I, Hsu E, Do C, Gaba A, et al
Epigenetic Alterations Affecting Transcription Factors and Signaling Pathways in Stromal Cells of Endometriosis.
PLoS One. 2017;12:e0170859.
PubMed Abstract available

FU Y, Xu X, Xue J, Duan W, et al
Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis.
PLoS One. 2017;12:e0170712.
PubMed Abstract available

ESCORIZA D, Ben Hassine J
Diversity of Guilds of Amphibian Larvae in North-Western Africa.
PLoS One. 2017;12:e0170763.
PubMed Abstract available

TSURUTA SI, Ebina M, Kobayashi M, Takahashi W, et al
Complete Chloroplast Genomes of Erianthus arundinaceus and Miscanthus sinensis: Comparative Genomics and Evolution of the Saccharum Complex.
PLoS One. 2017;12:e0169992.
PubMed Abstract available

CHEN Z, Li Z, Zhuang R, Yuan Y, et al
Adaptive Estimation of Personalized Maximum Tolerated Dose in Cancer Phase I Clinical Trials Based on All Toxicities and Individual Genomic Profile.
PLoS One. 2017;12:e0170187.
PubMed Abstract available

CHA S, Srinivasan S, Jang JH, Lee D, et al
Metagenomic Analysis of Airborne Bacterial Community and Diversity in Seoul, Korea, during December 2014, Asian Dust Event.
PLoS One. 2017;12:e0170693.
PubMed Abstract available

HWANG J, Park SY, Park M, Lee S, et al
Seasonal Dynamics and Metagenomic Characterization of Marine Viruses in Goseong Bay, Korea.
PLoS One. 2017;12:e0169841.
PubMed Abstract available

NIU R, Liu Y, Zhang Y, Zhang Y, et al
iTRAQ-Based Proteomics Reveals Novel Biomarkers for Idiopathic Pulmonary Fibrosis.
PLoS One. 2017;12:e0170741.
PubMed Abstract available

HELWA I, Cai J, Drewry MD, Zimmerman A, et al
A Comparative Study of Serum Exosome Isolation Using Differential Ultracentrifugation and Three Commercial Reagents.
PLoS One. 2017;12:e0170628.
PubMed Abstract available

DE VRIES PS, Sabater-Lleal M, Chasman DI, Trompet S, et al
Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.
PLoS One. 2017;12:e0167742.
PubMed Abstract available

HALLER T, Leitsalu L, Fischer K, Nuotio ML, et al
MixFit: Methodology for Computing Ancestry-Related Genetic Scores at the Individual Level and Its Application to the Estonian and Finnish Population Studies.
PLoS One. 2017;12:e0170325.
PubMed Abstract available

SIRIPHAP A, Leekitcharoenphon P, Kaas RS, Theethakaew C, et al
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.
PLoS One. 2017;12:e0169324.
PubMed Abstract available

CHERIFI YA, Gaouar SB, Guastamacchia R, El-Bahrawy KA, et al
Weak Genetic Structure in Northern African Dromedary Camels Reflects Their Unique Evolutionary History.
PLoS One. 2017;12:e0168672.
PubMed Abstract available

GONZALEZ-WEVAR CA, Nakano T, Palma A, Poulin E, et al
Biogeography in Cellana (Patellogastropoda, Nacellidae) with Special Emphasis on the Relationships of Southern Hemisphere Oceanic Island Species.
PLoS One. 2017;12:e0170103.
PubMed Abstract available

STEBNER F, Szadziewski R, Singh H, Gunkel S, et al
Biting Midges (Diptera: Ceratopogonidae) from Cambay Amber Indicate that the Eocene Fauna of the Indian Subcontinent Was Not Isolated.
PLoS One. 2017;12:e0169144.
PubMed Abstract available

YE X, Liu H, Jin Y, Guo M, et al
Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection.
PLoS One. 2017;12:e0169598.
PubMed Abstract available

MANICKAVELU A, Hattori T, Yamaoka S, Yoshimura K, et al
Genetic Nature of Elemental Contents in Wheat Grains and Its Genomic Prediction: Toward the Effective Use of Wheat Landraces from Afghanistan.
PLoS One. 2017;12:e0169416.
PubMed Abstract available

PRIYAMVADA H, Akila M, Singh RK, Ravikrishna R, et al
Terrestrial Macrofungal Diversity from the Tropical Dry Evergreen Biome of Southern India and Its Potential Role in Aerobiology.
PLoS One. 2017;12:e0169333.
PubMed Abstract available

AGULLO L, Romero-Silva MJ, Domenech M, Seeger M, et al
p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.
PLoS One. 2017;12:e0169544.
PubMed Abstract available

HATOUM D, Yagoub D, Ahadi A, Nassif NT, et al
Annexin/S100A Protein Family Regulation through p14ARF-p53 Activation: A Role in Cell Survival and Predicting Treatment Outcomes in Breast Cancer.
PLoS One. 2017;12:e0169925.
PubMed Abstract available

WEN HB, Cao ZM, Hua D, Xu P, et al
The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae).
PLoS One. 2017;12:e0169749.
PubMed Abstract available

VIRK RK, Gunalan V, Lee HK, Inoue M, et al
Molecular Evidence of Transmission of Influenza A/H1N1 2009 on a University Campus.
PLoS One. 2017;12:e0168596.
PubMed Abstract available

STROJAN K, Leonardi A, Bregar VB, Krizaj I, et al
Dispersion of Nanoparticles in Different Media Importantly Determines the Composition of Their Protein Corona.
PLoS One. 2017;12:e0169552.
PubMed Abstract available

SIEGWALD L, Touzet H, Lemoine Y, Hot D, et al
Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.
PLoS One. 2017;12:e0169563.
PubMed Abstract available

SCHNEIDER A, Matkovich SJ, Victoria B, Spinel L, et al
Changes of Ovarian microRNA Profile in Long-Living Ames Dwarf Mice during Aging.
PLoS One. 2017;12:e0169213.
PubMed Abstract available

ASOR E, Stav MY, Simon E, Fahoum I, et al
Risk for molecular contamination of tissue samples evaluated for targeted anti-cancer therapy.
PLoS One. 2017;12:e0173760.
PubMed Abstract available

KNITLOVA M, Horacek I
Late Pleistocene-Holocene paleobiogeography of the genus Apodemus in Central Europe.
PLoS One. 2017;12:e0173668.
PubMed Abstract available

VARDI O, Shamir I, Javasky E, Goren A, et al
Biases in the SMART-DNA library preparation method associated with genomic poly dA/dT sequences.
PLoS One. 2017;12:e0172769.
PubMed Abstract available

FORTI LR, Lingnau R, Encarnacao LC, Bertoluci J, et al
Can treefrog phylogeographical clades and species' phylogenetic topologies be recovered by bioacoustical analyses?
PLoS One. 2017;12:e0169911.
PubMed Abstract available

PELLETIER A, Obbard ME, Harnden M, McConnell S, et al
Determining causes of genetic isolation in a large carnivore (Ursus americanus) population to direct contemporary conservation measures.
PLoS One. 2017;12:e0172319.
PubMed Abstract available

SHEVCHENKO A, Yang Y, Knaust A, Verbavatz JM, et al
Open sesame: Identification of sesame oil and oil soot ink in organic deposits of Tang Dynasty lamps from Astana necropolis in China.
PLoS One. 2017;12:e0158636.
PubMed Abstract available

VEGA-CABRERA LA, Guerrero A, Rodriguez-Mejia JL, Tabche ML, et al
Analysis of Spo0M function in Bacillus subtilis.
PLoS One. 2017;12:e0172737.
PubMed Abstract available

GONZALEZ AV, Santelices B
Frequency of chimerism in populations of the kelp Lessonia spicata in central Chile.
PLoS One. 2017;12:e0169182.
PubMed Abstract available

UR REHMAN H, Azam N, Yao J, Benso A, et al
A three-way approach for protein function classification.
PLoS One. 2017;12:e0171702.
PubMed Abstract available

KUZNIAR A, Laffeber C, Eppink B, Bezstarosti K, et al
Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields.
PLoS One. 2017;12:e0170762.
PubMed Abstract available

CHO YE, Im EJ, Moon PG, Mezey E, et al
Increased liver-specific proteins in circulating extracellular vesicles as potential biomarkers for drug- and alcohol-induced liver injury.
PLoS One. 2017;12:e0172463.
PubMed Abstract available

IJAZ UZ, Quince C, Hanske L, Loman N, et al
The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
PLoS One. 2017;12:e0172605.
PubMed Abstract available

LI S, Li D, Zhao X, Wang Y, et al
A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken.
PLoS One. 2017;12:e0172211.
PubMed Abstract available

QIN L, Liu X, Liu S, Liu Y, et al
Differentially expressed proteins underlying childhood cortical dysplasia with epilepsy identified by iTRAQ proteomic profiling.
PLoS One. 2017;12:e0172214.
PubMed Abstract available

DUAN X, Wang K, Su S, Tian R, et al
De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae).
PLoS One. 2017;12:e0172513.
PubMed Abstract available

LU X, Kang X, Liu Y, Cui Z, et al
HIV-1 molecular epidemiology among newly diagnosed HIV-1 individuals in Hebei, a low HIV prevalence province in China.
PLoS One. 2017;12:e0171481.
PubMed Abstract available

TAYABALI AF, Coleman G, Crosthwait J, Nguyen KC, et al
Composition and pathogenic potential of a microbial bioremediation product used for crude oil degradation.
PLoS One. 2017;12:e0171911.
PubMed Abstract available

LIMA DF, de Lima LI, Rocha JA, de Andrade IM, et al
Seasonal change in main alkaloids of jaborandi (Pilocarpus microphyllus Stapf ex Wardleworth), an economically important species from the Brazilian flora.
PLoS One. 2017;12:e0170281.
PubMed Abstract available

WAIHO K, Fazhan H, Shahreza MS, Moh JH, et al
Transcriptome Analysis and Differential Gene Expression on the Testis of Orange Mud Crab, Scylla olivacea, during Sexual Maturation.
PLoS One. 2017;12:e0171095.
PubMed Abstract available

ZHANG X, Mu Y, Mu P, Ao J, et al
Transcriptome Analysis Reveals Comprehensive Insights into the Early Immune Response of Large Yellow Croaker (Larimichthys crocea) Induced by Trivalent Bacterial Vaccine.
PLoS One. 2017;12:e0170958.
PubMed Abstract available

N'DIAYE A, Haile JK, Cory AT, Clarke FR, et al
Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.
PLoS One. 2017;12:e0170941.
PubMed Abstract available

ANGELONE-ALASAAD S, Biebach I, Perez JM, Soriguer RC, et al
Molecular Analyses Reveal Unexpected Genetic Structure in Iberian Ibex Populations.
PLoS One. 2017;12:e0170827.
PubMed Abstract available

SOLLANEK KJ, Burniston JG, Kavazis AN, Morton AB, et al
Global Proteome Changes in the Rat Diaphragm Induced by Endurance Exercise Training.
PLoS One. 2017;12:e0171007.
PubMed Abstract available

HUANG X, Zang X, Wu F, Jin Y, et al
Transcriptome Sequencing of Gracilariopsis lemaneiformis to Analyze the Genes Related to Optically Active Phycoerythrin Synthesis.
PLoS One. 2017;12:e0170855.
PubMed Abstract available

ZHANG D, Xia X, Wang X, Zhang P, et al
PGRMC1 Is a Novel Potential Tumor Biomarker of Human Renal Cell Carcinoma Based on Quantitative Proteomic and Integrative Biological Assessments.
PLoS One. 2017;12:e0170453.
PubMed Abstract available

PANTOJA-MELENDEZ CA, Miranda-Duarte A, Roque-Ramirez B, Zenteno JC, et al
Epidemiological and Molecular Characterization of a Mexican Population Isolate with High Prevalence of Limb-Girdle Muscular Dystrophy Type 2A Due to a Novel Calpain-3 Mutation.
PLoS One. 2017;12:e0170280.
PubMed Abstract available

RODRIGUES RT, Chizzotti ML, Vital CE, Baracat-Pereira MC, et al
Differences in Beef Quality between Angus (Bos taurus taurus) and Nellore (Bos taurus indicus) Cattle through a Proteomic and Phosphoproteomic Approach.
PLoS One. 2017;12:e0170294.
PubMed Abstract available

CHO IT, Lim Y, Golden JA, Cho G, et al
Aristaless Related Homeobox (ARX) Interacts with beta-Catenin, BCL9, and P300 to Regulate Canonical Wnt Signaling.
PLoS One. 2017;12:e0170282.
PubMed Abstract available

HJELMSO MH, Hellmer M, Fernandez-Cassi X, Timoneda N, et al
Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing.
PLoS One. 2017;12:e0170199.
PubMed Abstract available

HE C, Fu J, Zhang J, Li Y, et al
A Gene-Oriented Haplotype Comparison Reveals Recently Selected Genomic Regions in Temperate and Tropical Maize Germplasm.
PLoS One. 2017;12:e0169806.
PubMed Abstract available

VOLLMERS J, Wiegand S, Kaster AK
Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!
PLoS One. 2017;12:e0169662.
PubMed Abstract available

VESTY A, Biswas K, Taylor MW, Gear K, et al
Evaluating the Impact of DNA Extraction Method on the Representation of Human Oral Bacterial and Fungal Communities.
PLoS One. 2017;12:e0169877.
PubMed Abstract available

YANG Y, Lian S, Meng L, Qu L, et al
Antibody Array Revealed PRL-3 Affects Protein Phosphorylation and Cytokine Secretion.
PLoS One. 2017;12:e0169665.
PubMed Abstract available

GELIN P, Fauvelot C, Mehn V, Bureau S, et al
Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type beta in Reunion Island, South Western Indian Ocean.
PLoS One. 2017;12:e0169692.
PubMed Abstract available

GUARINO MP, Altomare A, Barera S, Locato V, et al
Effect of Inulin on Proteome Changes Induced by Pathogenic Lipopolysaccharide in Human Colon.
PLoS One. 2017;12:e0169481.
PubMed Abstract available

BIAZZI E, Nazzicari N, Pecetti L, Brummer EC, et al
Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits.
PLoS One. 2017;12:e0169234.
PubMed Abstract available

ORTIZ ME, Bleckwedel J, Fadda S, Picariello G, et al
Global Analysis of Mannitol 2-Dehydrogenase in Lactobacillus reuteri CRL 1101 during Mannitol Production through Enzymatic, Genetic and Proteomic Approaches.
PLoS One. 2017;12:e0169441.
PubMed Abstract available

HAN Z, Kautto L, Nevalainen H
Secretion of Proteases by an Opportunistic Fungal Pathogen Scedosporium aurantiacum.
PLoS One. 2017;12:e0169403.
PubMed Abstract available

HOFF ML, Fabrizius A, Czech-Damal NU, Folkow LP, et al
Transcriptome Analysis Identifies Key Metabolic Changes in the Hooded Seal (Cystophora cristata) Brain in Response to Hypoxia and Reoxygenation.
PLoS One. 2017;12:e0169366.
PubMed Abstract available

KUO HW, Shih CL, Tsung JH, Liu SW, et al
Pharmacogenomics study on cadherin 2 network with regard to HIV infection and methadone treatment outcome.
PLoS One. 2017;12:e0174647.
PubMed Abstract available

QIN Y, Djabou AS, An F, Li K, et al
Proteomic analysis of injured storage roots in cassava (Manihot esculenta Crantz) under postharvest physiological deterioration.
PLoS One. 2017;12:e0174238.
PubMed Abstract available

ARMERO A, Baudouin L, Bocs S, This D, et al
Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.
PLoS One. 2017;12:e0173300.
PubMed Abstract available

EIRIN A, Zhu XY, Puranik AS, Woollard JR, et al
Integrated transcriptomic and proteomic analysis of the molecular cargo of extracellular vesicles derived from porcine adipose tissue-derived mesenchymal stem cells.
PLoS One. 2017;12:e0174303.
PubMed Abstract available

HOLMILA R, Sklias A, Muller DC, Degli Esposti D, et al
Targeted deep sequencing of plasma circulating cell-free DNA reveals Vimentin and Fibulin 1 as potential epigenetic biomarkers for hepatocellular carcinoma.
PLoS One. 2017;12:e0174265.
PubMed Abstract available

LOWDON RF, Wang T
Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancer.
PLoS One. 2017;12:e0174032.
PubMed Abstract available

NAGA PRASAD SV, Gupta MK, Duan ZH, Surampudi VS, et al
A unique microRNA profile in end-stage heart failure indicates alterations in specific cardiovascular signaling networks.
PLoS One. 2017;12:e0170456.
PubMed Abstract available

GUAYASAMIN JM, Hutter CR, Tapia EE, Culebras J, et al
Diversification of the rainfrog Pristimantis ornatissimus in the lowlands and Andean foothills of Ecuador.
PLoS One. 2017;12:e0172615.
PubMed Abstract available

MCDOUGALL CA, Welsh AB, Gosselin T, Anderson WG, et al
Rethinking the influence of hydroelectric development on gene flow in a long-lived fish, the Lake Sturgeon Acipenser fulvescens.
PLoS One. 2017;12:e0174269.
PubMed Abstract available

GANTUZ M, Lorenzetti MA, Chabay PA, Preciado MV, et al
A novel recombinant variant of latent membrane protein 1 from Epstein Barr virus in Argentina denotes phylogeographical association.
PLoS One. 2017;12:e0174221.
PubMed Abstract available

QI H, Song K, Li C, Wang W, et al
Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas).
PLoS One. 2017;12:e0174007.
PubMed Abstract available

HATTHAKAROON C, Pharkjaksu S, Chongtrakool P, Suwannakarn K, et al
Molecular epidemiology of cryptococcal genotype VNIc/ST5 in Siriraj Hospital, Thailand.
PLoS One. 2017;12:e0173744.
PubMed Abstract available

CHI W, Gao Y, Hu Q, Guo W, et al
Genome-wide analysis of brain and gonad transcripts reveals changes of key sex reversal-related genes expression and signaling pathways in three stages of Monopterus albus.
PLoS One. 2017;12:e0173974.
PubMed Abstract available

CHEN PC, Shih CH, Chu TJ, Lee YC, et al
Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia.
PLoS One. 2017;12:e0173490.
PubMed Abstract available

HE S, Wang H, Liu R, He M, et al
mRNA N6-methyladenosine methylation of postnatal liver development in pig.
PLoS One. 2017;12:e0173421.
PubMed Abstract available

PFEIFFER W, Braun J, Burchell J, Witte CL, et al
Whole-genome analysis of mycobacteria from birds at the San Diego Zoo.
PLoS One. 2017;12:e0173464.
PubMed Abstract available

KANG Z, Zhang X, Ding S, Tang C, et al
Transcriptomes of three species of Tipuloidea (Diptera, Tipulomorpha) and implications for phylogeny of Tipulomorpha.
PLoS One. 2017;12:e0173207.
PubMed Abstract available

ZHOU T, Souzeau E, Sharma S, Landers J, et al
Whole exome sequencing implicates eye development, the unfolded protein response and plasma membrane homeostasis in primary open-angle glaucoma.
PLoS One. 2017;12:e0172427.
PubMed Abstract available

POLLEGIONI P, Woeste K, Chiocchini F, Del Lungo S, et al
Rethinking the history of common walnut (Juglans regia L.) in Europe: Its origins and human interactions.
PLoS One. 2017;12:e0172541.
PubMed Abstract available

ELDRIDGE MD, Miller EJ, Neaves LE, Zenger KR, et al
Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii).
PLoS One. 2017;12:e0172777.
PubMed Abstract available

LI R, Chen D, Wang T, Wan Y, et al
High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba).
PLoS One. 2017;12:e0172883.
PubMed Abstract available

MUNOZ S, Guerrero FD, Kellogg A, Heekin AM, et al
Bioinformatic prediction of G protein-coupled receptor encoding sequences from the transcriptome of the foreleg, including the Haller's organ, of the cattle tick, Rhipicephalus australis.
PLoS One. 2017;12:e0172326.
PubMed Abstract available

RUDQVIST N, Spetz J, Schuler E, Parris TZ, et al
Transcriptional response to 131I exposure of rat thyroid gland.
PLoS One. 2017;12:e0171797.
PubMed Abstract available

ZHU C, Pan Z, Wang H, Chang G, et al
De novo assembly, characterization and annotation for the transcriptome of Sarcocheilichthys sinensis.
PLoS One. 2017;12:e0171966.
PubMed Abstract available

RIZWAN M, Aslam M, Asghar MJ, Abbas G, et al
Pre-breeding of lentil (Lens culinaris Medik.) for herbicide resistance through seed mutagenesis.
PLoS One. 2017;12:e0171846.
PubMed Abstract available

WU B, Hu Y, Huo P, Zhang Q, et al
Transcriptome analysis of hexaploid hulless oat in response to salinity stress.
PLoS One. 2017;12:e0171451.
PubMed Abstract available

ZYCH K, Snoek BL, Elvin M, Rodriguez M, et al
reGenotyper: Detecting mislabeled samples in genetic data.
PLoS One. 2017;12:e0171324.
PubMed Abstract available

BACKMAN TW, Evans DS, Girke T
Large-scale bioactivity analysis of the small-molecule assayed proteome.
PLoS One. 2017;12:e0171413.
PubMed Abstract available

MASSAFRA V, Milona A, Vos HR, Burgering BM, et al
Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation.
PLoS One. 2017;12:e0171185.
PubMed Abstract available

OMIDVAR V, Mohorianu I, Dalmay T, Zheng Y, et al
Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant.
PLoS One. 2017;12:e0170715.
PubMed Abstract available

BAI S, Chen H, Zhu L, Liu W, et al
Comparative study on the in vitro effects of Pseudomonas aeruginosa and seaweed alginates on human gut microbiota.
PLoS One. 2017;12:e0171576.
PubMed Abstract available

YANG MQ, Li DZ, Wen J, Yi TS, et al
Phylogeny and biogeography of the amphi-Pacific genus Aphananthe.
PLoS One. 2017;12:e0171405.
PubMed Abstract available

POLANSKI A, Szczesna A, Garbulowski M, Kimmel M, et al
Coalescence computations for large samples drawn from populations of time-varying sizes.
PLoS One. 2017;12:e0170701.
PubMed Abstract available

COX MJ, Turek EM, Hennessy C, Mirza GK, et al
Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients.
PLoS One. 2017;12:e0170622.
PubMed Abstract available

VON SALTZWEDEL H, Scheu S, Schaefer I
Genetic structure and distribution of Parisotoma notabilis (Collembola) in Europe: Cryptic diversity, split of lineages and colonization patterns.
PLoS One. 2017;12:e0170909.
PubMed Abstract available

REYNAUD Y, Zheng C, Wu G, Sun Q, et al
Bayesian population structure analysis reveals presence of phylogeographically specific sublineages within previously ill-defined T group of Mycobacterium tuberculosis.
PLoS One. 2017;12:e0171584.
PubMed Abstract available

HUANG N, Wang W, Yao Y, Zhu F, et al
The influence of different concentrations of bio-organic fertilizer on cucumber Fusarium wilt and soil microflora alterations.
PLoS One. 2017;12:e0171490.
PubMed Abstract available

ZOU Z, Liu J, Yang L, Xie G, et al
Survey of the rubber tree genome reveals a high number of cysteine protease-encoding genes homologous to Arabidopsis SAG12.
PLoS One. 2017;12:e0171725.
PubMed Abstract available

VAN GOOR A, Ashwell CM, Persia ME, Rothschild MF, et al
Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat.
PLoS One. 2017;12:e0171414.
PubMed Abstract available

ZUO LH, Shang AQ, Zhang S, Yu XY, et al
The first complete chloroplast genome sequences of Ulmus species by de novo sequencing: Genome comparative and taxonomic position analysis.
PLoS One. 2017;12:e0171264.
PubMed Abstract available

LEE MY, Park C, Ha SE, Park PJ, et al
Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels.
PLoS One. 2017;12:e0171262.
PubMed Abstract available

MARTINS CO, Demarchi L, Ferreira FM, Pomerantzeff PM, et al
Rheumatic Heart Disease and Myxomatous Degeneration: Differences and Similarities of Valve Damage Resulting from Autoimmune Reactions and Matrix Disorganization.
PLoS One. 2017;12:e0170191.
PubMed Abstract available

VILA M, Hermida M, Fernandez C, Perea S, et al
Phylogeography and Conservation Genetics of the Ibero-Balearic Three-Spined Stickleback (Gasterosteus aculeatus).
PLoS One. 2017;12:e0170685.
PubMed Abstract available

EBERHARDT C, Thillai M, Parker R, Siddiqui N, et al
Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis.
PLoS One. 2017;12:e0170285.
PubMed Abstract available

WANG H, Zhao S, Gao Y, Yang J, et al
Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa).
PLoS One. 2017;12:e0170210.
PubMed Abstract available

FRAIJA-FERNANDEZ N, Fernandez M, Lehnert K, Raga JA, et al
Long-Distance Travellers: Phylogeography of a Generalist Parasite, Pholeter gastrophilus, from Cetaceans.
PLoS One. 2017;12:e0170184.
PubMed Abstract available

WOO HJ, Yu C, Reifman J
Collective Genetic Interaction Effects and the Role of Antigen-Presenting Cells in Autoimmune Diseases.
PLoS One. 2017;12:e0169918.
PubMed Abstract available

GRANT LR, O'Brien KL, Weatherholtz RC, Reid R, et al
Norovirus and Sapovirus Epidemiology and Strain Characteristics among Navajo and Apache Infants.
PLoS One. 2017;12:e0169491.
PubMed Abstract available

XI Y, Jiao W, Cao J, Jiang W, et al
Effects of chlorogenic acid on capacity of free radicals scavenging and proteomic changes in postharvest fruit of nectarine.
PLoS One. 2017;12:e0182494.
PubMed Abstract available

KUMAR S, Subbarao BL, Kumari R, Hallan V, et al
Molecular characterization of a novel cryptic virus infecting pigeonpea plants.
PLoS One. 2017;12:e0181829.
PubMed Abstract available

ANEL-LOPEZ L, Ortega-Ferrusola C, Martinez-Rodriguez C, Alvarez M, et al
Analysis of seminal plasma from brown bear (Ursus arctos) during the breeding season: Its relationship with testosterone levels.
PLoS One. 2017;12:e0181776.
PubMed Abstract available

DHARMAYANTHI AB, Terai Y, Sulandari S, Zein MS, et al
The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.
PLoS One. 2017;12:e0173147.
PubMed Abstract available

LLUVERAS-TENORIO A, Vinciguerra R, Galano E, Blaensdorf C, et al
GC/MS and proteomics to unravel the painting history of the lost Giant Buddhas of Bamiyan (Afghanistan).
PLoS One. 2017;12:e0172990.
PubMed Abstract available

RUTKOWSKI R, Zawadzka D, Suchecka E, Merta D, et al
Conservation genetics of the capercaillie in Poland - Delineation of conservation units.
PLoS One. 2017;12:e0174901.
PubMed Abstract available

EDWARDS RD, Crisp MD, Cook DH, Cook LG, et al
Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics.
PLoS One. 2017;12:e0174812.
PubMed Abstract available

SUN Y, Guo W, Wang F, Zhan C, et al
Transcriptome analysis of Corynebacterium glutamicum in the process of recombinant protein expression in bioreactors.
PLoS One. 2017;12:e0174824.
PubMed Abstract available

GUINOISEAU T, Moreau A, Hohnadel G, Ngo-Giang-Huong N, et al
Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.
PLoS One. 2017;12:e0174852.
PubMed Abstract available

PELLON A, Ramirez-Garcia A, Buldain I, Antoran A, et al
Molecular and cellular responses of the pathogenic fungus Lomentospora prolificans to the antifungal drug voriconazole.
PLoS One. 2017;12:e0174885.
PubMed Abstract available

LI Y, Urban A, Midura D, Simon HG, et al
Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-kappaB in epicardial EMT.
PLoS One. 2017;12:e0174563.
PubMed Abstract available

LI Y, Morrow J, Raby B, Tantisira K, et al
Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data.
PLoS One. 2017;12:e0174602.
PubMed Abstract available

DECAP D, Reumers J, Herzeel C, Costanza P, et al
Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.
PLoS One. 2017;12:e0174575.
PubMed Abstract available

MEINERT C, Brandt U, Heine V, Beyert J, et al
Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.
PLoS One. 2017;12:e0174256.
PubMed Abstract available

ARNAU G, Bhattacharjee R, Mn S, Chair H, et al
Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.
PLoS One. 2017;12:e0174150.
PubMed Abstract available

WARD LJ, Ljunggren SA, Karlsson H, Li W, et al
Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages.
PLoS One. 2017;12:e0174475.
PubMed Abstract available

ZOU B, Li J, Zhou Q, Quan ZX, et al
MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
PLoS One. 2017;12:e0174609.
PubMed Abstract available

MARROTTE RR, Bowman J
The relationship between least-cost and resistance distance.
PLoS One. 2017;12:e0174212.
PubMed Abstract available

BYRUM SD, Burdine MS, Orr L, Mackintosh SG, et al
Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection.
PLoS One. 2017;12:e0174771.
PubMed Abstract available

WOOD LE, De Grave S, Daniels SR
Phylogeographic patterning among two codistributed shrimp species (Crustacea: Decapoda: Palaemonidae) reveals high levels of connectivity across biogeographic regions along the South African coast.
PLoS One. 2017;12:e0173356.
PubMed Abstract available

PAGES-MONTEIRO L, Marti R, Commun C, Alliot N, et al
Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa.
PLoS One. 2017;12:e0173022.
PubMed Abstract available

REZNICK DN, Furness AI, Meredith RW, Springer MS, et al
The origin and biogeographic diversification of fishes in the family Poeciliidae.
PLoS One. 2017;12:e0172546.
PubMed Abstract available

WANG Z, Fan G, Dong Y, Zhai X, et al
Implications of polyploidy events on the phenotype, microstructure, and proteome of Paulownia australis.
PLoS One. 2017;12:e0172633.
PubMed Abstract available

CHENG J, Romantsov T, Engel K, Doxey AC, et al
Functional metagenomics reveals novel beta-galactosidases not predictable from gene sequences.
PLoS One. 2017;12:e0172545.
PubMed Abstract available

PERUMAL N, Manicam C, Steinicke M, Funke S, et al
Characterization of the human aqueous humour proteome: A comparison of the genders.
PLoS One. 2017;12:e0172481.
PubMed Abstract available

HTUN NM, Magliano DJ, Zhang ZY, Lyons J, et al
Prediction of acute coronary syndromes by urinary proteome analysis.
PLoS One. 2017;12:e0172036.
PubMed Abstract available

GEBHARDT MJ, Jacobson RK, Shuman HA
Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria.
PLoS One. 2017;12:e0173116.
PubMed Abstract available

NAKAOKA T, Iga M, Yamada T, Koujima I, et al
Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.
PLoS One. 2017;12:e0172951.
PubMed Abstract available

BATISTA ME, Silva DD, Sales MA, Sa AA, et al
New data on the stem and leaf anatomy of two conifers from the Lower Cretaceous of the Araripe Basin, northeastern Brazil, and their taxonomic and paleoecological implications.
PLoS One. 2017;12:e0173090.
PubMed Abstract available

BRYANT AE, Aldape MJ, Bayer CR, Katahira EJ, et al
Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.
PLoS One. 2017;12:e0172486.
PubMed Abstract available

BENEVENUTO RF, Agapito-Tenfen SZ, Vilperte V, Wikmark OG, et al
Molecular responses of genetically modified maize to abiotic stresses as determined through proteomic and metabolomic analyses.
PLoS One. 2017;12:e0173069.
PubMed Abstract available

PRICE A, Garhyan J, Gibas C
The impact of RNA secondary structure on read start locations on the Illumina sequencing platform.
PLoS One. 2017;12:e0173023.
PubMed Abstract available

FOSCHI C, Laghi L, Parolin C, Giordani B, et al
Novel approaches for the taxonomic and metabolic characterization of lactobacilli: Integration of 16S rRNA gene sequencing with MALDI-TOF MS and 1H-NMR.
PLoS One. 2017;12:e0172483.
PubMed Abstract available

VARGAS-CARO C, Bustamante C, Bennett MB, Ovenden JR, et al
Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean.
PLoS One. 2017;12:e0172255.
PubMed Abstract available

SERGEANT K, Printz B, Gutsch A, Behr M, et al
Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases.
PLoS One. 2017;12:e0171990.
PubMed Abstract available

WANG R, Cui Y, Xu Y, Irudayaraj J, et al
Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-beta-carboline (TaClo) in vitro.
PLoS One. 2017;12:e0172243.
PubMed Abstract available

KAMFWA K, Zhao D, Kelly JD, Cichy KA, et al
Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation.
PLoS One. 2017;12:e0172141.
PubMed Abstract available

PARK YJ, Koh J, Kwon JT, Park YS, et al
Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes.
PLoS One. 2017;12:e0169677.
PubMed Abstract available

SAKAKI M, Ebihara Y, Okamura K, Nakabayashi K, et al
Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses.
PLoS One. 2017;12:e0171431.
PubMed Abstract available

LI YH, Wang HP, Yao H, O'Bryant P, et al
De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens.
PLoS One. 2017;12:e0171187.
PubMed Abstract available

HAMILTON SL, Logan CA, Fennie HW, Sogard SM, et al
Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics.
PLoS One. 2017;12:e0169670.
PubMed Abstract available

ZACHER B, Michel M, Schwalb B, Cramer P, et al
Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
PLoS One. 2017;12:e0169249.
PubMed Abstract available

BEISSER D, Kaschani F, Graupner N, Grossmann L, et al
Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
PLoS One. 2017;12:e0168183.
PubMed Abstract available

NANDAKUMAR P, Tin A, Grove ML, Ma J, et al
MicroRNAs in the miR-17 and miR-15 families are downregulated in chronic kidney disease with hypertension.
PLoS One. 2017;12:e0176734.
PubMed Abstract available

CLARKE B, Mahapatra M, Friedgut O, Bumbarov V, et al
Persistence of Lineage IV Peste-des-petits ruminants virus within Israel since 1993: An evolutionary perspective.
PLoS One. 2017;12:e0177028.
PubMed Abstract available

SONG J, Hu Y, Li J, Zheng H, et al
Different microRNA profiles reveal the diverse outcomes induced by EV71 and CA16 infection in human umbilical vein endothelial cells using high-throughput sequencing.
PLoS One. 2017;12:e0177657.
PubMed Abstract available

MORALES-CORREA E CASTRO AC, Barbosa NCCP
Recent evolutionary history of Chrysoperla externa (Hagen 1861) (Neuroptera: Chrysopidae) in Brazil.
PLoS One. 2017;12:e0177414.
PubMed Abstract available

CARRERAS-PLANELLA L, Soler-Majoral J, Rubio-Esteve C, Lozano-Ramos SI, et al
Characterization and proteomic profile of extracellular vesicles from peritoneal dialysis efflux.
PLoS One. 2017;12:e0176987.
PubMed Abstract available

KARAH N, Jolley KA, Hall RM, Uhlin BE, et al
Database for the ampC alleles in Acinetobacter baumannii.
PLoS One. 2017;12:e0176695.
PubMed Abstract available

ZHU Y, Zhou G, Yu X, Xu Q, et al
LC-MS-MS quantitative analysis reveals the association between FTO and DNA methylation.
PLoS One. 2017;12:e0175849.
PubMed Abstract available

RODRIGUES J, Viegas W, Silva M
45S rDNA external transcribed spacer organization reveals new phylogenetic relationships in Avena genus.
PLoS One. 2017;12:e0176170.
PubMed Abstract available

WANG J, Pei L, Jin Z, Zhang K, et al
Overexpression of the protein phosphatase 2A regulatory subunit a gene ZmPP2AA1 improves low phosphate tolerance by remodeling the root system architecture of maize.
PLoS One. 2017;12:e0176538.
PubMed Abstract available

YARYGIN K, Tyakht A, Larin A, Kostryukova E, et al
Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses.
PLoS One. 2017;12:e0176154.
PubMed Abstract available

RAYMOND CK, Hernandez J, Karr R, Hill K, et al
Collection of cell-free DNA for genomic analysis of solid tumors in a clinical laboratory setting.
PLoS One. 2017;12:e0176241.
PubMed Abstract available

RUEDA-ZARATE HA, Imaz-Rosshandler I, Cardenas-Ovando RA, Castillo-Fernandez JE, et al
A computational toxicogenomics approach identifies a list of highly hepatotoxic compounds from a large microarray database.
PLoS One. 2017;12:e0176284.
PubMed Abstract available

NAOUR S, Espinoza BM, Aedo JE, Zuloaga R, et al
Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis.
PLoS One. 2017;12:e0176447.
PubMed Abstract available

BARUAH IK, Panda D, M V J, Das DJ, et al
Bruchid egg induced transcript dynamics in developing seeds of black gram (Vigna mungo).
PLoS One. 2017;12:e0176337.
PubMed Abstract available

ROOMP K, Kristinsson H, Schvartz D, Ubhayasekera K, et al
Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism.
PLoS One. 2017;12:e0176391.
PubMed Abstract available

FUKUDA T, Nomura M, Kato Y, Tojo H, et al
A selected reaction monitoring mass spectrometric assessment of biomarker candidates diagnosing large-cell neuroendocrine lung carcinoma by the scaling method using endogenous references.
PLoS One. 2017;12:e0176219.
PubMed Abstract available

NORONHA FERNANDES-BRUM C, Marinho Rezende P, Cherubino Ribeiro TH, Ricon de Oliveira R, et al
A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms.
PLoS One. 2017;12:e0176333.
PubMed Abstract available

JEONG C, Peter BM, Basnyat B, Neupane M, et al
A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau.
PLoS One. 2017;12:e0175885.
PubMed Abstract available

VIANA MVC, Figueiredo H, Ramos R, Guimaraes LC, et al
Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.
PLoS One. 2017;12:e0176347.
PubMed Abstract available

ONUKI R, Yamaguchi R, Shibuya T, Kanehisa M, et al
Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks.
PLoS One. 2017;12:e0176530.
PubMed Abstract available

WELINDER C, Pawlowski K, Szasz AM, Yakovleva M, et al
Correlation of histopathologic characteristics to protein expression and function in malignant melanoma.
PLoS One. 2017;12:e0176167.
PubMed Abstract available

SINGH SK, Aspi J, Kvist L, Sharma R, et al
Fine-scale population genetic structure of the Bengal tiger (Panthera tigris tigris) in a human-dominated western Terai Arc Landscape, India.
PLoS One. 2017;12:e0174371.
PubMed Abstract available

SALEHE BR, Jones CI, Di Fatta G, McGuffin LJ, et al
RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses.
PLoS One. 2017;12:e0175957.
PubMed Abstract available

NAVARRO G, Martinez-Pinilla E, Sanchez-Melgar A, Ortiz R, et al
A genomics approach identifies selective effects of trans-resveratrol in cerebral cortex neuron and glia gene expression.
PLoS One. 2017;12:e0176067.
PubMed Abstract available

OH J, Lee S, Lee H, Cho JY, et al
The novel carboxylesterase 1 variant c.662A>G may decrease the bioactivation of oseltamivir in humans.
PLoS One. 2017;12:e0176320.
PubMed Abstract available

FRANCOIS L, Wijnrocx K, Colinet FG, Gengler N, et al
Genomics of a revived breed: Case study of the Belgian campine cattle.
PLoS One. 2017;12:e0175916.
PubMed Abstract available

LI YZ, Fan XW, Chen Q, Zhong H, et al
A photoperiod-responsive protein compendium and conceptual proteome roadmap outline in maize grown in growth chambers with controlled conditions.
PLoS One. 2017;12:e0174003.
PubMed Abstract available

LV J, Zhang L, Liu P, Li J, et al
Transcriptomic variation of eyestalk reveals the genes and biological processes associated with molting in Portunus trituberculatus.
PLoS One. 2017;12:e0175315.
PubMed Abstract available

MURPHY SN, Avillach P, Bellazzi R, Phillips L, et al
Combining clinical and genomics queries using i2b2 - Three methods.
PLoS One. 2017;12:e0172187.
PubMed Abstract available

MARITZ JM, Sullivan SA, Prill RJ, Aksoy E, et al
Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.
PLoS One. 2017;12:e0175527.
PubMed Abstract available

RIBEIRO MM, Piotti A, Ricardo A, Gaspar D, et al
Genetic diversity and divergence at the Arbutus unedo L. (Ericaceae) westernmost distribution limit.
PLoS One. 2017;12:e0175239.
PubMed Abstract available

LUDINGTON WB, Seher TD, Applegate O, Li X, et al
Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater.
PLoS One. 2017;12:e0174930.
PubMed Abstract available

WEI LH, Yan S, Teo YY, Huang YZ, et al
Phylogeography of Y-chromosome haplogroup O3a2b2-N6 reveals patrilineal traces of Austronesian populations on the eastern coastal regions of Asia.
PLoS One. 2017;12:e0175080.
PubMed Abstract available

ZHANG LJ, Cai WZ, Luo JY, Zhang S, et al
Phylogeographic patterns of Lygus pratensis (Hemiptera: Miridae): Evidence for weak genetic structure and recent expansion in northwest China.
PLoS One. 2017;12:e0174712.
PubMed Abstract available

NICHOLAS A, Kim YK, Lee WK, Selasi GN, et al
Molecular epidemiology and antimicrobial susceptibility of Clostridium difficile isolates from two Korean hospitals.
PLoS One. 2017;12:e0174716.
PubMed Abstract available

WAN X, Zhao X, Yau SS
An information-based network approach for protein classification.
PLoS One. 2017;12:e0174386.
PubMed Abstract available

SONG YN, Dong S, Wei B, Liu P, et al
Metabolomic mechanisms of gypenoside against liver fibrosis in rats: An integrative analysis of proteomics and metabolomics data.
PLoS One. 2017;12:e0173598.
PubMed Abstract available

FUKAGAWA T, Takafuji K, Tachibanaki S, Kawamura S, et al
Purification of cone outer segment for proteomic analysis on its membrane proteins in carp retina.
PLoS One. 2017;12:e0173908.
PubMed Abstract available

CELIS JS, Edgell DR, Stelbrink B, Wibberg D, et al
Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
PLoS One. 2017;12:e0173734.
PubMed Abstract available

LIU T, Luo C, Wang J, Ma J, et al
Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens.
PLoS One. 2017;12:e0173620.
PubMed Abstract available

GUERRERO-JIMENEZ CJ, Pena F, Morales P, Mendez M, et al
Pattern of genetic differentiation of an incipient speciation process: The case of the high Andean killifish Orestias.
PLoS One. 2017;12:e0170380.
PubMed Abstract available

CHRISTENSEN KA, Davidson WS
Autopolyploidy genome duplication preserves other ancient genome duplications in Atlantic salmon (Salmo salar).
PLoS One. 2017;12:e0173053.
PubMed Abstract available

MATSUDA F, Kinoshita S, Nishino S, Tomita A, et al
Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism.
PLoS One. 2017;12:e0172742.
PubMed Abstract available

LI J, Yang B, Shi M, Yuan K, et al
Effects upon metabolic pathways and energy production by Sb(III) and As(III)/Sb(III)-oxidase gene aioA in Agrobacterium tumefaciens GW4.
PLoS One. 2017;12:e0172823.
PubMed Abstract available

HAFT DR, Haft DH
A comprehensive software suite for protein family construction and functional site prediction.
PLoS One. 2017;12:e0171758.
PubMed Abstract available

MICALLEF G, Cash P, Fernandes JM, Rajan B, et al
Dietary Yeast Cell Wall Extract Alters the Proteome of the Skin Mucous Barrier in Atlantic Salmon (Salmo salar): Increased Abundance and Expression of a Calreticulin-Like Protein.
PLoS One. 2017;12:e0169075.
PubMed Abstract available

ELMI AA, Bansal D, Acharya A, Skariah S, et al
Human Papillomavirus (HPV) Infection: Molecular Epidemiology, Genotyping, Seroprevalence and Associated Risk Factors among Arab Women in Qatar.
PLoS One. 2017;12:e0169197.
PubMed Abstract available

JAMANN TM, Sood S, Wisser RJ, Holland JB, et al
High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time.
PLoS One. 2017;12:e0168910.
PubMed Abstract available

BOUCHEHAM A, Sommard V, Zehraoui F, Boualem A, et al
IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data.
PLoS One. 2017;12:e0179787.
PubMed Abstract available

PINSONNEAULT JK, Frater JT, Kompa B, Mascarenhas R, et al
Intronic SNP in ESR1 encoding human estrogen receptor alpha is associated with brain ESR1 mRNA isoform expression and behavioral traits.
PLoS One. 2017;12:e0179020.
PubMed Abstract available

MOHR T, Haudek-Prinz V, Slany A, Grillari J, et al
Proteome profiling in IL-1beta and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis.
PLoS One. 2017;12:e0179065.
PubMed Abstract available

PARK KH, Greenwood-Quaintance KE, Uhl JR, Cunningham SA, et al
Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.
PLoS One. 2017;12:e0179003.
PubMed Abstract available

SINGH V, Singh B, Joshi R, Jaju P, et al
Changes in the leaf proteome profile of Withania somnifera (L.) Dunal in response to Alternaria alternata infection.
PLoS One. 2017;12:e0178924.
PubMed Abstract available

ZHOU DX, Zhao Y, Baker JA, Gu Q, et al
The effect of alcohol on the differential expression of cluster of differentiation 14 gene, associated pathways, and genetic network.
PLoS One. 2017;12:e0178689.
PubMed Abstract available

CSOSZ E, Labiscsak P, Kallo G, Markus B, et al
Proteomics investigation of OSCC-specific salivary biomarkers in a Hungarian population highlights the importance of identification of population-tailored biomarkers.
PLoS One. 2017;12:e0177282.
PubMed Abstract available

UGARTE TORRES A, Chu A, Read R, MacDonald J, et al
The epidemiology of Staphylococcus aureus carriage in patients attending inner city sexually transmitted infections and community clinics in Calgary, Canada.
PLoS One. 2017;12:e0178557.
PubMed Abstract available

GUPTA S, Bhar A, Chatterjee M, Ghosh A, et al
Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack.
PLoS One. 2017;12:e0178164.
PubMed Abstract available

TEIXEIRA ADD, Games PD, Katz BB, Tomich JM, et al
Proteomic analysis in the Dufour's gland of Africanized Apis mellifera workers (Hymenoptera: Apidae).
PLoS One. 2017;12:e0177415.
PubMed Abstract available

CAMERON SJS, Lewis KE, Huws SA, Hegarty MJ, et al
A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.
PLoS One. 2017;12:e0177062.
PubMed Abstract available

WANG X, Shojaie A, Zhang Y, Shelley D, et al
Exploratory plasma proteomic analysis in a randomized crossover trial of aspirin among healthy men and women.
PLoS One. 2017;12:e0178444.
PubMed Abstract available

YAMAZAKI T, Hatano Y, Handa T, Kato S, et al
Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.
PLoS One. 2017;12:e0177764.
PubMed Abstract available

EVERS C, Fischer C, Dikow N, Schott S, et al
Familial breast cancer: Genetic counseling over time, including patients expectations and initiators considering the Angelina Jolie effect.
PLoS One. 2017;12:e0177893.
PubMed Abstract available

XIAO W, Chen P, Xiao J, Wang, et al
Comparative transcriptome profiling of a thermal resistant vs. sensitive silkworm strain in response to high temperature under stressful humidity condition.
PLoS One. 2017;12:e0177641.
PubMed Abstract available

HAKIMI O, Ternette N, Murphy R, Kessler BM, et al
A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue.
PLoS One. 2017;12:e0177656.
PubMed Abstract available

WILLEMS H, Jacobs A, Hadiwikarta WW, Venken T, et al
Thermodynamic framework to assess low abundance DNA mutation detection by hybridization.
PLoS One. 2017;12:e0177384.
PubMed Abstract available

BOHME M, Spassov N, Ebner M, Geraads D, et al
Messinian age and savannah environment of the possible hominin Graecopithecus from Europe.
PLoS One. 2017;12:e0177347.
PubMed Abstract available

CHEN YC, Chen KD, Su MC, Chin CH, et al
Genome-wide gene expression array identifies novel genes related to disease severity and excessive daytime sleepiness in patients with obstructive sleep apnea.
PLoS One. 2017;12:e0176575.
PubMed Abstract available

PAVA Z, Noviyanti R, Handayuni I, Trimarsanto H, et al
Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections.
PLoS One. 2017;12:e0177445.
PubMed Abstract available

RAVIV B, Granot G, Chalifa-Caspi V, Grafi G, et al
The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.
PLoS One. 2017;12:e0177537.
PubMed Abstract available

ZHENG Y, Xu S, Liu J, Zhao Y, et al
Genetic diversity and population structure of Chinese natural bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers.
PLoS One. 2017;12:e0177508.
PubMed Abstract available

DIEZ BENAVENTE E, Ward Z, Chan W, Mohareb FR, et al
Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure.
PLoS One. 2017;12:e0177134.
PubMed Abstract available

KHOMTCHOUK BB, Hennessy JR, Wahlestedt C
shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.
PLoS One. 2017;12:e0176334.
PubMed Abstract available

PASCUAL M, Rives B, Schunter C, Macpherson E, et al
Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea.
PLoS One. 2017;12:e0176419.
PubMed Abstract available

MONTANA L, Caniglia R, Galaverni M, Fabbri E, et al
Combining phylogenetic and demographic inferences to assess the origin of the genetic diversity in an isolated wolf population.
PLoS One. 2017;12:e0176560.
PubMed Abstract available

YU H, Zhang Y, Wang Z, Liu L, et al
Diverse range dynamics and dispersal routes of plants on the Tibetan Plateau during the late Quaternary.
PLoS One. 2017;12:e0177101.
PubMed Abstract available

ZHOU Y, Wang S, Zhu H, Li P, et al
Phylogeny and biogeography of South Chinese brown frogs (Ranidae, Anura).
PLoS One. 2017;12:e0175113.
PubMed Abstract available

IBANEZ MI, Cabello P, Luque-Almagro VM, Saez LP, et al
Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).
PLoS One. 2017;12:e0172908.
PubMed Abstract available

TRIVEDI MS, Holger D, Bui AT, Craddock TJA, et al
Short-term sleep deprivation leads to decreased systemic redox metabolites and altered epigenetic status.
PLoS One. 2017;12:e0181978.
PubMed Abstract available

MURPHY SM, Augustine BC, Ulrey WA, Guthrie JM, et al
Consequences of severe habitat fragmentation on density, genetics, and spatial capture-recapture analysis of a small bear population.
PLoS One. 2017;12:e0181849.
PubMed Abstract available

TSAI FJ, Chen SY, Liu YC, Liao HY, et al
The comparison of CHCA solvent compositions for improving LC-MALDI performance and its application to study the impact of aflatoxin B1 on the liver proteome of diabetes mellitus type 1 mice.
PLoS One. 2017;12:e0181423.
PubMed Abstract available

EREZ O, Romero R, Maymon E, Chaemsaithong P, et al
The prediction of late-onset preeclampsia: Results from a longitudinal proteomics study.
PLoS One. 2017;12:e0181468.
PubMed Abstract available

VOLDOIRE E, Brunet F, Naville M, Volff JN, et al
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish.
PLoS One. 2017;12:e0180936.
PubMed Abstract available

OLIVEIRA LR, Gehara MCM, Fraga LD, Lopes F, et al
Ancient female philopatry, asymmetric male gene flow, and synchronous population expansion support the influence of climatic oscillations on the evolution of South American sea lion (Otaria flavescens).
PLoS One. 2017;12:e0179442.
PubMed Abstract available

SINGH A, Sharma AK, Singh NK, Sharma TR, et al
PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.
PLoS One. 2017;12:e0179736.
PubMed Abstract available

HAN Z, Huang H, Gao Y, Huang Q, et al
Functional annotation of Alzheimer's disease associated loci revealed by GWASs.
PLoS One. 2017;12:e0179677.
PubMed Abstract available

DUNCAN C, Jamieson FB, Troudt J, Izzo L, et al
Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion.
PLoS One. 2017;12:e0179996.
PubMed Abstract available

XU K, Niu Q, Zhao H, Du Y, et al
Transcriptomic analysis to uncover genes affecting cold resistance in the Chinese honey bee (Apis cerana cerana).
PLoS One. 2017;12:e0179922.
PubMed Abstract available

MACKIEWICZ P, Moska M, Wierzbicki H, Gagat P, et al
Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group.
PLoS One. 2017;12:e0179760.
PubMed Abstract available

WU YH, Cheng H, Xu L, Jin XB, et al
Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater.
PLoS One. 2017;12:e0179997.
PubMed Abstract available

SUSEK K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, et al
Epigenomic diversification within the genus Lupinus.
PLoS One. 2017;12:e0179821.
PubMed Abstract available

LISTL D, Poschlod P, Reisch C
Phylogeography of a tough rock survivor in European dry grasslands.
PLoS One. 2017;12:e0179961.
PubMed Abstract available

RIZAL G, Karki S, Thakur V, Wanchana S, et al
A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio.
PLoS One. 2017;12:e0179567.
PubMed Abstract available

BWOGI J, Jere KC, Karamagi C, Byarugaba DK, et al
Whole genome analysis of selected human and animal rotaviruses identified in Uganda from 2012 to 2014 reveals complex genome reassortment events between human, bovine, caprine and porcine strains.
PLoS One. 2017;12:e0178855.
PubMed Abstract available

KRUSE A, Fattah-Hosseini S, Saha S, Johnson R, et al
Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.
PLoS One. 2017;12:e0179531.
PubMed Abstract available

RIVERA M, Ramos Y, Rodriguez-Valentin M, Lopez-Acevedo S, et al
Targeting multiple pro-apoptotic signaling pathways with curcumin in prostate cancer cells.
PLoS One. 2017;12:e0179587.
PubMed Abstract available

ADACHI S
Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data.
PLoS One. 2017;12:e0179180.
PubMed Abstract available

PEARSON LJ, Klaharn IY, Thongsawang B, Manuprasert W, et al
Multiple extracellular vesicle types in peritoneal dialysis effluent are prominent and contain known biomarkers.
PLoS One. 2017;12:e0178601.
PubMed Abstract available

LUO S, Cao N, Tang Y, Gu W, et al
Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis.
PLoS One. 2017;12:e0178549.
PubMed Abstract available

GAMEZ-POZO A, Trilla-Fuertes L, Prado-Vazquez G, Chiva C, et al
Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics.
PLoS One. 2017;12:e0178296.
PubMed Abstract available

PANNACCIULLI FG, Maltagliati F, de Guttry C, Achituv Y, et al
Phylogeography on the rocks: The contribution of current and historical factors in shaping the genetic structure of Chthamalus montagui (Crustacea, Cirripedia).
PLoS One. 2017;12:e0178287.
PubMed Abstract available

SAHLBERG BANG C, Demirel I, Kruse R, Persson K, et al
Global gene expression profiling and antibiotic susceptibility after repeated exposure to the carbon monoxide-releasing molecule-2 (CORM-2) in multidrug-resistant ESBL-producing uropathogenic Escherichia coli.
PLoS One. 2017;12:e0178541.
PubMed Abstract available

NYINE M, Uwimana B, Swennen R, Batte M, et al
Trait variation and genetic diversity in a banana genomic selection training population.
PLoS One. 2017;12:e0178734.
PubMed Abstract available

WANG Y, Liu A, Li W, Jiang Y, et al
Comparative proteomic analysis of eggplant (Solanum melongena L.) heterostylous pistil development.
PLoS One. 2017;12:e0179018.
PubMed Abstract available

BARANZELLI MC, Cosacov A, Ferreiro G, Johnson LA, et al
Travelling to the south: Phylogeographic spatial diffusion model in Monttea aphylla (Plantaginaceae), an endemic plant of the Monte Desert.
PLoS One. 2017;12:e0178827.
PubMed Abstract available

LV Y
Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus.
PLoS One. 2017;12:e0178603.
PubMed Abstract available

KIM JK, Bae SE, Lee SJ, Yoon MG, et al
New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae).
PLoS One. 2017;12:e0178001.
PubMed Abstract available

BECKER MG, Walker PL, Pulgar-Vidal NC, Belmonte MF, et al
SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets.
PLoS One. 2017;12:e0178256.
PubMed Abstract available

BELL KL, Hamm CA, Shapiro AM, Nice CC, et al
Sympatric, temporally isolated populations of the pine white butterfly Neophasia menapia, are morphologically and genetically differentiated.
PLoS One. 2017;12:e0176989.
PubMed Abstract available

KEPPLINGER D, Takhar M, Sasaki M, Hollander Z, et al
PGCA: An algorithm to link protein groups created from MS/MS data.
PLoS One. 2017;12:e0177569.
PubMed Abstract available

MEI Y, Bi WL, Greenwald NF, Agar NY, et al
Genomic profile of human meningioma cell lines.
PLoS One. 2017;12:e0178322.
PubMed Abstract available

KEARNEY P, Hunsucker SW, Li XJ, Porter A, et al
An integrated risk predictor for pulmonary nodules.
PLoS One. 2017;12:e0177635.
PubMed Abstract available

ZAZA G, Dalla Gassa A, Felis G, Granata S, et al
Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen.
PLoS One. 2017;12:e0178228.
PubMed Abstract available

PANTOJA Y, Pinheiro K, Veras A, Araujo F, et al
PanWeb: A web interface for pan-genomic analysis.
PLoS One. 2017;12:e0178154.
PubMed Abstract available

LEWANDOWSKA DW, Schreiber PW, Schuurmans MM, Ruehe B, et al
Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection.
PLoS One. 2017;12:e0177340.
PubMed Abstract available

NEUDITSCHKO M, Raadsma HW, Khatkar MS, Jonas E, et al
Identification of key contributors in complex population structures.
PLoS One. 2017;12:e0177638.
PubMed Abstract available

HAJRAH NH, Obaid AY, Atef A, Ramadan AM, et al
Transcriptomic analysis of salt stress responsive genes in Rhazya stricta.
PLoS One. 2017;12:e0177589.
PubMed Abstract available

MONDEJAR R, Perez C, Onaindia A, Martinez N, et al
Molecular basis of targeted therapy in T/NK-cell lymphoma/leukemia: A comprehensive genomic and immunohistochemical analysis of a panel of 33 cell lines.
PLoS One. 2017;12:e0177524.
PubMed Abstract available

ZHANG W, Xu J, Li Y, Zou X, et al
A new two-stage method for revealing missing parts of edges in protein-protein interaction networks.
PLoS One. 2017;12:e0177029.
PubMed Abstract available

VAHIA MN, Yadav N, Ladiwala U, Mathur D, et al
A diffusion based study of population dynamics: Prehistoric migrations into South Asia.
PLoS One. 2017;12:e0176985.
PubMed Abstract available

CASTLEY A, Sawleshwarkar S, Varma R, Herring B, et al
A national study of the molecular epidemiology of HIV-1 in Australia 2005-2012.
PLoS One. 2017;12:e0170601.
PubMed Abstract available

HAEUSERMANN T, Greshake B, Blasimme A, Irdam D, et al
Open sharing of genomic data: Who does it and why?
PLoS One. 2017;12:e0177158.
PubMed Abstract available

TRIFILETTI DM, Sturz VN, Showalter TN, Lobo JM, et al
Towards decision-making using individualized risk estimates for personalized medicine: A systematic review of genomic classifiers of solid tumors.
PLoS One. 2017;12:e0176388.
PubMed Abstract available

DANTAS RCC, Silva RTE, Ferreira ML, Goncalves IR, et al
Molecular epidemiological survey of bacteremia by multidrug resistant Pseudomonas aeruginosa: the relevance of intrinsic resistance mechanisms.
PLoS One. 2017;12:e0176774.
PubMed Abstract available

PLAIRE D, Puaud S, Marsolier-Kergoat MC, Elalouf JM, et al
Comparative analysis of the sensitivity of metagenomic sequencing and PCR to detect a biowarfare simulant (Bacillus atrophaeus) in soil samples.
PLoS One. 2017;12:e0177112.
PubMed Abstract available

KOC I, Caetano-Anolles G
The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.
PLoS One. 2017;12:e0176129.
PubMed Abstract available

PETERSEN TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, et al
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
PLoS One. 2017;12:e0176469.
PubMed Abstract available

ROZENBLUM E, Sotelo-Silveira JR, Kim GY, Zhu JY, et al
Novel near-diploid ovarian cancer cell line derived from a highly aneuploid metastatic ovarian tumor.
PLoS One. 2017;12:e0182610.
PubMed Abstract available

TONG ML, Zhao Q, Liu LL, Zhu XZ, et al
Whole genome sequence of the Treponema pallidum subsp. pallidum strain Amoy: An Asian isolate highly similar to SS14.
PLoS One. 2017;12:e0182768.
PubMed Abstract available

NG PK, Lin SM, Lim PE, Hurtado AQ, et al
Genetic and morphological analyses of Gracilaria firma and G. changii (Gracilariaceae, Rhodophyta), the commercially important agarophytes in western Pacific.
PLoS One. 2017;12:e0182176.
PubMed Abstract available

TANI H, Takeshita JI, Aoki H, Nakamura K, et al
Identification of RNA biomarkers for chemical safety screening in mouse embryonic stem cells using RNA deep sequencing analysis.
PLoS One. 2017;12:e0182032.
PubMed Abstract available

DENG M, Dong Y, Zhao Z, Li Y, et al
Dissecting the proteome dynamics of the salt stress induced changes in the leaf of diploid and autotetraploid Paulownia fortunei.
PLoS One. 2017;12:e0181937.
PubMed Abstract available

BECK SV, Carvalho GR, Barlow A, Ruber L, et al
Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax.
PLoS One. 2017;12:e0179557.
PubMed Abstract available

YAKOVLEVA A, Plieskatt JL, Jensen S, Humeida R, et al
Fit for genomic and proteomic purposes: Sampling the fitness of nucleic acid and protein derivatives from formalin fixed paraffin embedded tissue.
PLoS One. 2017;12:e0181756.
PubMed Abstract available

SORIA-BOIX C, Donat-Torres MP, Urios V
Contacts in the last 90,000 years over the Strait of Gibraltar evidenced by genetic analysis of wild boar (Sus scrofa).
PLoS One. 2017;12:e0181929.
PubMed Abstract available

CHO HR, Kim HS, Park JS, Park SC, et al
Construction and characterization of the Korean whole saliva proteome to determine ethnic differences in human saliva proteome.
PLoS One. 2017;12:e0181765.
PubMed Abstract available

BRUNELLI A, Kampuansai J, Seielstad M, Lomthaisong K, et al
Y chromosomal evidence on the origin of northern Thai people.
PLoS One. 2017;12:e0181935.
PubMed Abstract available

PERSYN E, Karakachoff M, Le Scouarnec S, Le Clezio C, et al
DoEstRare: A statistical test to identify local enrichments in rare genomic variants associated with disease.
PLoS One. 2017;12:e0179364.
PubMed Abstract available

ZHANG H, Yin L, Wang H, Wang G, et al
Genome-wide identification of Hami melon miRNAs with putative roles during fruit development.
PLoS One. 2017;12:e0180600.
PubMed Abstract available

PASCUAL T, Apellaniz-Ruiz M, Pernaut C, Cueto-Felgueroso C, et al
Polymorphisms associated with everolimus pharmacokinetics, toxicity and survival in metastatic breast cancer.
PLoS One. 2017;12:e0180192.
PubMed Abstract available

ABERNATHY J, Brezas A, Snekvik KR, Hardy RW, et al
Integrative functional analyses using rainbow trout selected for tolerance to plant diets reveal nutrigenomic signatures for soy utilization without the concurrence of enteritis.
PLoS One. 2017;12:e0180972.
PubMed Abstract available

GUO P, Zhu B, Xu L, Niu H, et al
Genomic prediction with parallel computing for slaughter traits in Chinese Simmental beef cattle using high-density genotypes.
PLoS One. 2017;12:e0179885.
PubMed Abstract available

ALANAGREH L, Pegg C, Harikumar A, Buchheim M, et al
Assessing intragenomic variation of the internal transcribed spacer two: Adapting the Illumina metagenomics protocol.
PLoS One. 2017;12:e0181491.
PubMed Abstract available

RYU YS, Chandran SP, Kim K, Lee SK, et al
Oligo- and dsDNA-mediated genome editing using a tetA dual selection system in Escherichia coli.
PLoS One. 2017;12:e0181501.
PubMed Abstract available

ALLEVATO M, Bolotin E, Grossman M, Mane-Padros D, et al
Sequence-specific DNA binding by MYC/MAX to low-affinity non-E-box motifs.
PLoS One. 2017;12:e0180147.
PubMed Abstract available

KLYCZEK KK, Bonilla JA, Jacobs-Sera D, Adair TL, et al
Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages.
PLoS One. 2017;12:e0180517.
PubMed Abstract available

DOU L, Jia X, Wei H, Fan S, et al
Global analysis of DNA methylation in young (J1) and senescent (J2) Gossypium hirsutum L. cotyledons by MeDIP-Seq.
PLoS One. 2017;12:e0179141.
PubMed Abstract available

PINNA C, Carta L, Deiana V, Camarda I, et al
Phyto-toponyms of Arbutus unedo L. and their distribution in Sardinia (Italy).
PLoS One. 2017;12:e0181174.
PubMed Abstract available

JAISWAL RK, Kumar P, Sharma A, Mishra DK, et al
Proteomic identification of proteins differentially expressed following overexpression of hTERT (human telomerase reverse transcriptase) in cancer cells.
PLoS One. 2017;12:e0181027.
PubMed Abstract available

WANG H, Ba H, Yang C, Zhang J, et al
Inner and inter population structure construction of Chinese Jiangsu Han population based on Y23 STR system.
PLoS One. 2017;12:e0180921.
PubMed Abstract available

FAN W, Zhong Y, Qin M, Lin B, et al
Differentially expressed microRNAs in diapausing versus HCl-treated Bombyx embryos.
PLoS One. 2017;12:e0180085.
PubMed Abstract available

XU EG, Mager EM, Grosell M, Stieglitz JD, et al
Developmental transcriptomic analyses for mechanistic insights into critical pathways involved in embryogenesis of pelagic mahi-mahi (Coryphaena hippurus).
PLoS One. 2017;12:e0180454.
PubMed Abstract available

ZEREYESUS YA, Dalton TJ
Rates of return to sorghum and millet research investments: A meta-analysis.
PLoS One. 2017;12:e0180414.
PubMed Abstract available

BAI Y, Li X
Late Miocene Pseudolarix amabilis bract-scale complex from Zhejiang, East China.
PLoS One. 2017;12:e0180979.
PubMed Abstract available

WEN F, Wu X, Li T, Jia M, et al
Genome-wide survey of heat shock factors and heat shock protein 70s and their regulatory network under abiotic stresses in Brachypodium distachyon.
PLoS One. 2017;12:e0180352.
PubMed Abstract available

HAN B, Zhang S, Zeng F, Mao J, et al
Nutritional and reproductive signaling revealed by comparative gene expression analysis in Chrysopa pallens (Rambur) at different nutritional statuses.
PLoS One. 2017;12:e0180373.
PubMed Abstract available

EZURA K, Ji-Seong K, Mori K, Suzuki Y, et al
Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum).
PLoS One. 2017;12:e0180003.
PubMed Abstract available

ZEHENDER G, Veo C, Ebranati E, Carta V, et al
Reconstructing the recent West Nile virus lineage 2 epidemic in Europe and Italy using discrete and continuous phylogeography.
PLoS One. 2017;12:e0179679.
PubMed Abstract available

ZHOU X, Xing X, Hou J, Liu J, et al
Quantitative proteomics analysis of proteins involved in alkane uptake comparing the profiling of Pseudomonas aeruginosa SJTD-1 in response to n-octadecane and n-hexadecane.
PLoS One. 2017;12:e0179842.
PubMed Abstract available

BOVO S, Mazzoni G, Ribani A, Utzeri VJ, et al
A viral metagenomic approach on a non-metagenomic experiment: Mining next generation sequencing datasets from pig DNA identified several porcine parvoviruses for a retrospective evaluation of viral infections.
PLoS One. 2017;12:e0179462.
PubMed Abstract available

FENG B, Guo Q, Zheng K, Qin Y, et al
Antennal transcriptome analysis of the piercing moth Oraesia emarginata (Lepidoptera: Noctuidae).
PLoS One. 2017;12:e0179433.
PubMed Abstract available

CUI H, Bansal V, Grunert M, Malecova B, et al
Muscle-relevant genes marked by stable H3K4me2/3 profiles and enriched MyoD binding during myogenic differentiation.
PLoS One. 2017;12:e0179464.
PubMed Abstract available

D'IPPOLITO S, Di Simone N, Orteschi D, Pomponi MG, et al
The chromosome analysis of the miscarriage tissue. Miscarried embryo/fetal crown rump length (CRL) measurement: A practical use.
PLoS One. 2017;12:e0178113.
PubMed Abstract available

CHEN X, Zhang M, Tan J, Huang S, et al
Comparative transcriptome analysis provides insights into molecular mechanisms for parthenocarpic fruit development in eggplant (Solanum melongena L.).
PLoS One. 2017;12:e0179491.
PubMed Abstract available

GOMEZ-GARZON C, Hernandez-Santana A, Dussan J
A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials.
PLoS One. 2017;12:e0179666.
PubMed Abstract available

HU J, Lei L, de Meaux J
Temporal fitness fluctuations in experimental Arabidopsis thaliana populations.
PLoS One. 2017;12:e0178990.
PubMed Abstract available

NEY G, Schul J
Population structure within the one-dimensional range of a coastal plain katydid.
PLoS One. 2017;12:e0179361.
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