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COVID Reference, 4th edition, 372 pages

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  Genetics

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Articles published in PLoS One

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Single Articles


    January 2020
  1. KORDY K, Gaufin T, Mwangi M, Li F, et al
    Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve.
    PLoS One. 2020;15:e0219633.
    PubMed     Abstract available


  2. XU P, Tang G, Cui W, Chen G, et al
    Transcriptional Differences in Peanut (Arachis hypogaea L.) Seeds at the Freshly Harvested, After-ripening and Newly Germinated Seed Stages: Insights into the Regulatory Networks of Seed Dormancy Release and Germination.
    PLoS One. 2020;15:e0219413.
    PubMed     Abstract available


  3. GRAHAM CF, Boreham DR, Manzon RG, Stott W, et al
    How "simple" methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish.
    PLoS One. 2020;15:e0226608.
    PubMed     Abstract available


  4. NOTT MA, Driscoll HE, Takeda M, Vangala M, et al
    Advanced biofilm analysis in streams receiving organic deicer runoff.
    PLoS One. 2020;15:e0227567.
    PubMed     Abstract available


  5. LV L, Yu K, Lu H, Zhang X, et al
    Transcriptome-wide identification of novel circular RNAs in soybean in response to low-phosphorus stress.
    PLoS One. 2020;15:e0227243.
    PubMed     Abstract available


  6. RASMUSSEN SL, Nielsen JL, Jones OR, Berg TB, et al
    Genetic structure of the European hedgehog (Erinaceus europaeus) in Denmark.
    PLoS One. 2020;15:e0227205.
    PubMed     Abstract available


  7. SETIAWAN AB, Teo CH, Kikuchi S, Sassa H, et al
    Centromeres of Cucumis melo L. comprise Cmcent and two novel repeats, CmSat162 and CmSat189.
    PLoS One. 2020;15:e0227578.
    PubMed     Abstract available


  8. VEITH M, Gocmen B, Sotiropoulos K, Eleftherakos K, et al
    Phylogeographic analyses point to long-term survival on the spot in micro-endemic Lycian salamanders.
    PLoS One. 2020;15:e0226326.
    PubMed     Abstract available


  9. MA Z, Wang L, Zhao M, Gu S, et al
    iTRAQ proteomics reveals the regulatory response to Magnaporthe oryzae in durable resistant vs. susceptible rice genotypes.
    PLoS One. 2020;15:e0227470.
    PubMed     Abstract available


  10. ARAUCO-SHAPIRO G, Schumacher KI, Boersma D, Bouzat JL, et al
    The role of demographic history and selection in shaping genetic diversity of the Galapagos penguin (Spheniscus mendiculus).
    PLoS One. 2020;15:e0226439.
    PubMed     Abstract available


  11. LONGCHAMPS RJ, Castellani CA, Yang SY, Newcomb CE, et al
    Evaluation of mitochondrial DNA copy number estimation techniques.
    PLoS One. 2020;15:e0228166.
    PubMed     Abstract available


  12. HE D, Zhang J, Zhang X, He S, et al
    Development of SSR markers in Paeonia based on De Novo transcriptomic assemblies.
    PLoS One. 2020;15:e0227794.
    PubMed     Abstract available


  13. WISCOVITCH-RUSSO R, Rivera-Perez J, Narganes-Storde YM, Garcia-Roldan E, et al
    Pre-Columbian zoonotic enteric parasites: An insight into Puerto Rican indigenous culture diets and life styles.
    PLoS One. 2020;15:e0227810.
    PubMed     Abstract available


  14. KIM SH, Kim SW, Lim GH, Lyu JI, et al
    Transcriptome analysis to identify candidate genes associated with the yellow-leaf phenotype of a Cymbidium mutant generated by gamma-irradiation.
    PLoS One. 2020;15:e0228078.
    PubMed     Abstract available


  15. SMIDT EC, Paez MZ, Vieira LDN, Viruel J, et al
    Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae).
    PLoS One. 2020;15:e0227991.
    PubMed     Abstract available


  16. HERZBERG D, Strobel P, Muller H, Meneses C, et al
    Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness.
    PLoS One. 2020;15:e0228134.
    PubMed     Abstract available


  17. CHUNG YW, Gwak HJ, Moon S, Rho M, et al
    Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
    PLoS One. 2020;15:e0227886.
    PubMed     Abstract available


  18. DE CESARE A, Sala C, Castellani G, Astolfi A, et al
    Effect of Lactobacillus acidophilus D2/CSL (CECT 4529) supplementation in drinking water on chicken crop and caeca microbiome.
    PLoS One. 2020;15:e0228338.
    PubMed     Abstract available


  19. AHSAN T, Urmi NJ, Sajib AA
    Heterogeneity in the distribution of 159 drug-response related SNPs in world populations and their genetic relatedness.
    PLoS One. 2020;15:e0228000.
    PubMed     Abstract available


  20. TIAN X, Xie J, Yu J
    Physiological and transcriptomic responses of Lanzhou Lily (Lilium davidii, var. unicolor) to cold stress.
    PLoS One. 2020;15:e0227921.
    PubMed     Abstract available


  21. CHEN SM, Lin CE, Chen HH, Cheng YF, et al
    Effect of prednisolone on glyoxalase 1 in an inbred mouse model of aristolochic acid nephropathy using a proteomics method with fluorogenic derivatization-liquid chromatography-tandem mass spectrometry.
    PLoS One. 2020;15:e0227838.
    PubMed     Abstract available


  22. VAN HOUT D, Verschuuren TD, Bruijning-Verhagen PCJ, Bosch T, et al
    Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content.
    PLoS One. 2020;15:e0227604.
    PubMed     Abstract available


  23. KHADIR A, Madhu D, Kavalakatt S, Cherian P, et al
    PR3 levels are impaired in plasma and PBMCs from Arabs with cardiovascular diseases.
    PLoS One. 2020;15:e0227606.
    PubMed     Abstract available


  24. RONDINONE V, Serrecchia L, Parisi A, Fasanella A, et al
    Genetic characterization of Bacillus anthracis strains circulating in Italy from 1972 to 2018.
    PLoS One. 2020;15:e0227875.
    PubMed     Abstract available


  25. MOHAMED A, Collins J, Jiang H, Molendijk J, et al
    Concurrent lipidomics and proteomics on malignant plasma cells from multiple myeloma patients: Probing the lipid metabolome.
    PLoS One. 2020;15:e0227455.
    PubMed     Abstract available


  26. LV Y, He XY, Li D, Liu T, et al
    Sex-specific and opposite modulatory aspects revealed by PPI network and pathway analysis of ischemic stroke in humans.
    PLoS One. 2020;15:e0227481.
    PubMed     Abstract available


  27. HOANG TTH, Dang DA, Pham TH, Luong MH, et al
    Epidemiological and comparative genomic analysis of Bacillus anthracis isolated from northern Vietnam.
    PLoS One. 2020;15:e0228116.
    PubMed     Abstract available


  28. TFAILY MA, Nassar F, Sellam LS, Amir-Tidadini ZC, et al
    miRNA expression in advanced Algerian breast cancer tissues.
    PLoS One. 2020;15:e0227928.
    PubMed     Abstract available


  29. BABA T, Momen M, Campbell MT, Walia H, et al
    Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping.
    PLoS One. 2020;15:e0228118.
    PubMed     Abstract available


  30. RAMDASI AY, Arankalle VA
    The expression patterns of immune response genes in the Peripheral Blood Mononuclear cells of pregnant women presenting with subclinical or clinical HEV infection are different and trimester-dependent: A whole transcriptome analysis.
    PLoS One. 2020;15:e0228068.
    PubMed     Abstract available


  31. MOLES L, Gomez M, Moroder E, Bustos G, et al
    Staphylococcus epidermidis in feedings and feces of preterm neonates.
    PLoS One. 2020;15:e0227823.
    PubMed     Abstract available


  32. CHIUMIENTO IR, Ituarte S, Sun J, Qiu JW, et al
    Hemocyanin of the caenogastropod Pomacea canaliculata exhibits evolutionary differences among gastropod clades.
    PLoS One. 2020;15:e0228325.
    PubMed     Abstract available


  33. DAMAZIAK K, Kieliszek M, Buclaw M
    Characterization of structure and protein of vitelline membranes of precocial (ring-necked pheasant, gray partridge) and superaltricial (cockatiel parrot, domestic pigeon) birds.
    PLoS One. 2020;15:e0228310.
    PubMed     Abstract available


  34. MOBARK NA, Alharbi M, Alhabeeb L, AlMubarak L, et al
    Clinical management and genomic profiling of pediatric low-grade gliomas in Saudi Arabia.
    PLoS One. 2020;15:e0228356.
    PubMed     Abstract available


  35. ROMAGNOLI CL, Pellegrino KCM, Silva NM, Brianesi UA, et al
    Diversity of Mycobacteriaceae from aquatic environment at the Sao Paulo Zoological Park Foundation in Brazil.
    PLoS One. 2020;15:e0227759.
    PubMed     Abstract available


  36. MORRO B, Doherty MK, Balseiro P, Handeland SO, et al
    Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss).
    PLoS One. 2020;15:e0227003.
    PubMed     Abstract available


  37. RANDHAWA GS, Soltysiak MPM, El Roz H, de Souza CPE, et al
    Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study.
    PLoS One. 2020;15:e0232391.
    PubMed     Abstract available


  38. DEVANGA RAGUPATHI NK, Veeraraghavan B, Muthuirulandi Sethuvel DP, Anandan S, et al
    First Indian report on genome-wide comparison of multidrug-resistant Escherichia coli from blood stream infections.
    PLoS One. 2020;15:e0220428.
    PubMed     Abstract available


  39. VAN NEER W, Alhaique F, Wouters W, Dierickx K, et al
    Aquatic fauna from the Takarkori rock shelter reveals the Holocene central Saharan climate and palaeohydrography.
    PLoS One. 2020;15:e0228588.
    PubMed     Abstract available


  40. REYNOLDS DA, Yoo MJ, Dixson DL, Ross C, et al
    Exposure to the Florida red tide dinoflagellate, Karenia brevis, and its associated brevetoxins induces ecophysiological and proteomic alterations in Porites astreoides.
    PLoS One. 2020;15:e0228414.
    PubMed     Abstract available


  41. KIM MH, Jeong H, Sim YM, Lee S, et al
    Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications.
    PLoS One. 2020;15:e0229416.
    PubMed     Abstract available


  42. CASSINI CS, Taucce PPG, de Carvalho TR, Fouquet A, et al
    One step beyond a broad molecular phylogenetic analysis: Species delimitation of Adenomera marmorata Steindachner, 1867 (Anura: Leptodactylidae).
    PLoS One. 2020;15:e0229324.
    PubMed     Abstract available


  43. CRISCUOLO NG, Angelini C
    StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis.
    PLoS One. 2020;15:e0229330.
    PubMed     Abstract available


  44. YAO L, Yu Q, Huang M, Song Z, et al
    Comparative iTRAQ proteomic profiling of sweet orange fruit on sensitive and tolerant rootstocks infected by 'Candidatus Liberibacter asiaticus'.
    PLoS One. 2020;15:e0228876.
    PubMed     Abstract available


  45. ZHU W, Cheng X, Ren C, Chen J, et al
    Proteomic characterization and comparison of ram (Ovis aries) and buck (Capra hircus) spermatozoa proteome using a data independent acquisition mass spectometry (DIA-MS) approach.
    PLoS One. 2020;15:e0228656.
    PubMed     Abstract available


  46. GU L, Wang F, Lin Z, Xu T, et al
    Genetic characteristics of Jiaji Duck by whole genome re-sequencing.
    PLoS One. 2020;15:e0228964.
    PubMed     Abstract available


  47. IBETO L, Antonopoulos A, Grassi P, Pang PC, et al
    Insights into the hyperglycosylation of human chorionic gonadotropin revealed by glycomics analysis.
    PLoS One. 2020;15:e0228507.
    PubMed     Abstract available


  48. COOMBS GW, Baines SL, Howden BP, Swenson KM, et al
    Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus.
    PLoS One. 2020;15:e0228676.
    PubMed     Abstract available


  49. KHRUNIN AV, Khvorykh GV, Fedorov AN, Limborska SA, et al
    Genomic landscape of the signals of positive natural selection in populations of Northern Eurasia: A view from Northern Russia.
    PLoS One. 2020;15:e0228778.
    PubMed     Abstract available


  50. VOLC SM, Ramos CRN, Galvao HCR, Felicio PS, et al
    The Brazilian TP53 mutation (R337H) and sarcomas.
    PLoS One. 2020;15:e0227260.
    PubMed     Abstract available


  51. HIN N, Newman M, Kaslin J, Douek AM, et al
    Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2.
    PLoS One. 2020;15:e0227258.
    PubMed     Abstract available


  52. JHA AR, Shmalberg J, Tanprasertsuk J, Perry L, et al
    Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach.
    PLoS One. 2020;15:e0227289.
    PubMed     Abstract available


  53. PETZOLD A, Hassanin A
    A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla).
    PLoS One. 2020;15:e0217956.
    PubMed     Abstract available


  54. GENG W, Qi Y, Li W, McConville TH, et al
    Epidemiology of Staphylococcus aureus in neonates on admission to a Chinese neonatal intensive care unit.
    PLoS One. 2020;15:e0211845.
    PubMed     Abstract available


  55. KIM KH, Kim JY, Lim WJ, Jeong S, et al
    Genome-wide association and epistatic interactions of flowering time in soybean cultivar.
    PLoS One. 2020;15:e0228114.
    PubMed     Abstract available


  56. AL-WAJEEH AS, Salhimi SM, Al-Mansoub MA, Khalid IA, et al
    Comparative proteomic analysis of different stages of breast cancer tissues using ultra high performance liquid chromatography tandem mass spectrometer.
    PLoS One. 2020;15:e0227404.
    PubMed     Abstract available


  57. TUCCI P, Portela M, Chetto CR, Gonzalez-Sapienza G, et al
    Integrative proteomic and glycoproteomic profiling of Mycobacterium tuberculosis culture filtrate.
    PLoS One. 2020;15:e0221837.
    PubMed     Abstract available


  58. BRUMFIELD KD, Huq A, Colwell RR, Olds JL, et al
    Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
    PLoS One. 2020;15:e0228899.
    PubMed     Abstract available


  59. TUSIIME FM, Gizaw A, Gussarova G, Nemomissa S, et al
    Afro-alpine flagships revisited: Parallel adaptation, intermountain admixture and shallow genetic structuring in the giant senecios (Dendrosenecio).
    PLoS One. 2020;15:e0228979.
    PubMed     Abstract available


  60. YE L, Liu P, Shi T, Wang A, et al
    Transcriptomic analysis to elucidate the response of honeybees (Hymenoptera: Apidae) to amitraz treatment.
    PLoS One. 2020;15:e0228933.
    PubMed     Abstract available


  61. BELTER A, Barciszewski J, Barciszewska AM
    Revealing the epigenetic effect of temozolomide on glioblastoma cell lines in therapeutic conditions.
    PLoS One. 2020;15:e0229534.
    PubMed     Abstract available


  62. SOLLER JM, Ausband DE, Szykman Gunther M
    The curse of observer experience: Error in noninvasive genetic sampling.
    PLoS One. 2020;15:e0229762.
    PubMed     Abstract available


  63. RHEAD B, Shao X, Quach H, Ghai P, et al
    Global expression and CpG methylation analysis of primary endothelial cells before and after TNFa stimulation reveals gene modules enriched in inflammatory and infectious diseases and associated DMRs.
    PLoS One. 2020;15:e0230884.
    PubMed     Abstract available


  64. HORITA T, Gaballah MH, Fukuta M, Kanno S, et al
    Time course analysis of large-scale gene expression in incised muscle using correspondence analysis.
    PLoS One. 2020;15:e0230737.
    PubMed     Abstract available


  65. JANGID A, Fukuda S, Seki M, Horiuchi T, et al
    Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice.
    PLoS One. 2020;15:e0228358.
    PubMed     Abstract available


  66. QUINTEIRO J, Rodriguez-Castro J, Rey-Mendez M, Gonzalez-Henriquez N, et al
    Phylogeography of the insular populations of common octopus, Octopus vulgaris Cuvier, 1797, in the Atlantic Macaronesia.
    PLoS One. 2020;15:e0230294.
    PubMed     Abstract available


  67. NAINO JIKA AK, Le Ru B, Capdevielle-Dulac C, Chardonnet F, et al
    Population genetics of the Mediterranean corn borer (Sesamia nonagrioides) differs between wild and cultivated plants.
    PLoS One. 2020;15:e0230434.
    PubMed     Abstract available


  68. ALBRECHT F, Hering J, Fuchs E, Illera JC, et al
    Phylogeny of the Eurasian Wren Nannus troglodytes (Aves: Passeriformes: Troglodytidae) reveals deep and complex diversification patterns of Ibero-Maghrebian and Cyrenaican populations.
    PLoS One. 2020;15:e0230151.
    PubMed     Abstract available


  69. IVANOVA AA, Zhelezova AD, Chernov TI, Dedysh SN, et al
    Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils.
    PLoS One. 2020;15:e0230157.
    PubMed     Abstract available


  70. HERREN GL, Habraken J, Waeyenberge L, Haegeman A, et al
    Effects of synthetic fertilizer and farm compost on soil nematode community in long-term crop rotation plots: A morphological and metabarcoding approach.
    PLoS One. 2020;15:e0230153.
    PubMed     Abstract available


  71. SUO W, Shi X, Xu S, Li X, et al
    Towards low cost, multiplex clinical genotyping: 4-fluorescent Kompetitive Allele-Specific PCR and its application on pharmacogenetics.
    PLoS One. 2020;15:e0230445.
    PubMed     Abstract available


  72. HIRATSUKA VY, Beans JA, Blanchard JW, Reedy J, et al
    An Alaska Native community's views on genetic research, testing, and return of results: Results from a public deliberation.
    PLoS One. 2020;15:e0229540.
    PubMed     Abstract available


  73. TRON C, Woillard JB, Houssel-Debry P, David V, et al
    Pharmacogenetic-Whole blood and intracellular pharmacokinetic-Pharmacodynamic (PG-PK2-PD) relationship of tacrolimus in liver transplant recipients.
    PLoS One. 2020;15:e0230195.
    PubMed     Abstract available


  74. SOUTHEY BR, Rodriguez-Zas SL, Rhodes JS, Sweedler JV, et al
    Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies.
    PLoS One. 2020;15:e0228562.
    PubMed     Abstract available


  75. MAGALHAES BRDS, Sosa-Gomez DR, Dionisio JF, Dias FC, et al
    Cytogenetic markers applied to cytotaxonomy in two soybean pests: Anticarsia gemmatalis (Hubner, 1818) and Chrysodeixis includens (Walker, 1858).
    PLoS One. 2020;15:e0230244.
    PubMed     Abstract available


  76. FAHSBENDER E, Charlys da-Costa A, Elise Gill D, Augusto de Padua Milagres F, et al
    Plasma virome of 781 Brazilians with unexplained symptoms of arbovirus infection include a novel parvovirus and densovirus.
    PLoS One. 2020;15:e0229993.
    PubMed     Abstract available


  77. TIRUVAYIPATI S, Wolfgeher D, Yue M, Duan F, et al
    Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles.
    PLoS One. 2020;15:e0228871.
    PubMed     Abstract available


  78. LO S, Fatokun C, Boukar O, Gepts P, et al
    Identification of QTL for perenniality and floral scent in cowpea (Vigna unguiculata [L.] Walp.).
    PLoS One. 2020;15:e0229167.
    PubMed     Abstract available


  79. PUJOL-CANADELL M, Perrier JR, Cunha L, Shuryak I, et al
    Cytogenetically-based biodosimetry after high doses of radiation.
    PLoS One. 2020;15:e0228350.
    PubMed     Abstract available


  80. SZILAGYI GT, Nawrocki AM, Eros K, Schmidt J, et al
    Proteomic changes during experimental de- and remyelination in the corpus callosum.
    PLoS One. 2020;15:e0230249.
    PubMed     Abstract available


  81. FARIA DM, da Silva JM Jr, Pires Costa L, Rezende Paiva S, et al
    Low mtDNA diversity in a highly differentiated population of spinner dolphins (Stenella longirostris) from the Fernando de Noronha Archipelago, Brazil.
    PLoS One. 2020;15:e0230660.
    PubMed     Abstract available


  82. LOPEZ-GARCIA G, Jerez JM, Franco L, Veredas FJ, et al
    Transfer learning with convolutional neural networks for cancer survival prediction using gene-expression data.
    PLoS One. 2020;15:e0230536.
    PubMed     Abstract available


  83. LOZADA DN, Ward BP, Carter AH
    Gains through selection for grain yield in a winter wheat breeding program.
    PLoS One. 2020;15:e0221603.
    PubMed     Abstract available


  84. FUKUDA S, Tacharoenmuang R, Guntapong R, Upachai S, et al
    Full genome characterization of novel DS-1-like G9P[8] rotavirus strains that have emerged in Thailand.
    PLoS One. 2020;15:e0231099.
    PubMed     Abstract available


  85. TIMPANO EK, Scheible MKR, Meiklejohn KA
    Optimization of the second internal transcribed spacer (ITS2) for characterizing land plants from soil.
    PLoS One. 2020;15:e0231436.
    PubMed     Abstract available


  86. RAMOS-NINO ME, Fitzpatrick DM, Eckstrom KM, Tighe S, et al
    Metagenomic analysis of Aedes aegypti and Culex quinquefasciatus mosquitoes from Grenada, West Indies.
    PLoS One. 2020;15:e0231047.
    PubMed     Abstract available


  87. NAM B, Kim SA, Park SD, Kim HJ, et al
    Regulatory effects of Lactobacillus plantarum HY7714 on skin health by improving intestinal condition.
    PLoS One. 2020;15:e0231268.
    PubMed     Abstract available


  88. JIANG Y, Sun Q, Fan M, Zhang X, et al
    Molecular characterization of a whirlin-like protein with biomineralization-related functions from the shell of Mytilus coruscus.
    PLoS One. 2020;15:e0231414.
    PubMed     Abstract available


  89. TATEHANA M, Kimura R, Mochizuki K, Inada H, et al
    Comprehensive histochemical profiles of histone modification in male germline cells during meiosis and spermiogenesis: Comparison of young and aged testes in mice.
    PLoS One. 2020;15:e0230930.
    PubMed     Abstract available


  90. HESS MK, Rowe SJ, Van Stijn TC, Henry HM, et al
    A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling.
    PLoS One. 2020;15:e0219882.
    PubMed     Abstract available


  91. BLEKHMAN A, Goryacheva I, Schepetov D, Zakharov I, et al
    Variability of the mitochondrial CO1 gene in native and invasive populations of Harmonia axyridis Pall. comparative analysis.
    PLoS One. 2020;15:e0231009.
    PubMed     Abstract available


  92. ROSSO A, Pitini E, D'Andrea E, Di Marco M, et al
    Genomics knowledge and attitudes among European public health professionals: Results of a cross-sectional survey.
    PLoS One. 2020;15:e0230749.
    PubMed     Abstract available


  93. CHARMET G, Tran LG, Auzanneau J, Rincent R, et al
    BWGS: A R package for genomic selection and its application to a wheat breeding programme.
    PLoS One. 2020;15:e0222733.
    PubMed     Abstract available


  94. GAO J, Li WB, Liu HF, Chen FB, et al
    Identification of differential expression genes related to anthocyanin biosynthesis in carmine radish (Raphanus sativus L.) fleshy roots using comparative RNA-Seq method.
    PLoS One. 2020;15:e0231729.
    PubMed     Abstract available


  95. BALL S, Hand N, Willman F, Durrant C, et al
    Genetic and demographic vulnerability of adder populations: Results of a genetic study in mainland Britain.
    PLoS One. 2020;15:e0231809.
    PubMed     Abstract available


  96. JOSHI B, Lyngdoh S, Singh SK, Sharma R, et al
    Revisiting the Woolly wolf (Canis lupus chanco) phylogeny in Himalaya: Addressing taxonomy, spatial extent and distribution of an ancient lineage in Asia.
    PLoS One. 2020;15:e0231621.
    PubMed     Abstract available


  97. UJCIKOVA H, Cechova K, Jagr M, Roubalova L, et al
    Proteomic analysis of protein composition of rat hippocampus exposed to morphine for 10 days; comparison with animals after 20 days of morphine withdrawal.
    PLoS One. 2020;15:e0231721.
    PubMed     Abstract available


  98. JEONG DW, Lee B, Heo S, Oh Y, et al
    Two genes involved in clindamycin resistance of Bacillus licheniformis and Bacillus paralicheniformis identified by comparative genomic analysis.
    PLoS One. 2020;15:e0231274.
    PubMed     Abstract available


  99. BRUMFIELD KD, Hasan NA, Leddy MB, Cotruvo JA, et al
    A comparative analysis of drinking water employing metagenomics.
    PLoS One. 2020;15:e0231210.
    PubMed     Abstract available


  100. KAUR K, Khatri I, Akhtar A, Subramanian S, et al
    Metagenomics analysis reveals features unique to Indian distal gut microbiota.
    PLoS One. 2020;15:e0231197.
    PubMed     Abstract available


  101. ZACZEK-MOCZYDLOWSKA MA, Young GK, Trudgett J, Plahe C, et al
    Phage cocktail containing Podoviridae and Myoviridae bacteriophages inhibits the growth of Pectobacterium spp. under in vitro and in vivo conditions.
    PLoS One. 2020;15:e0230842.
    PubMed     Abstract available


  102. ZYTNICKI M, Gaspin C
    mmannot: How to improve small-RNA annotation?
    PLoS One. 2020;15:e0231738.
    PubMed     Abstract available


  103. DEL VALLE JC, Herman JA, Whittall JB
    Genome skimming and microsatellite analysis reveal contrasting patterns of genetic diversity in a rare sandhill endemic (Erysimum teretifolium, Brassicaceae).
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    Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.
    PLoS One. 2018;13:e0192673.
    PubMed     Abstract available


  633. KUZUYA K, Ichihara S, Suzuki Y, Inoue C, et al
    Proteomics analysis identified peroxiredoxin 2 involved in early-phase left ventricular impairment in hamsters with cardiomyopathy.
    PLoS One. 2018;13:e0192624.
    PubMed     Abstract available


  634. POURNOSRAT R, Kaya S, Shaaf S, Kilian B, et al
    Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia.
    PLoS One. 2018;13:e0192386.
    PubMed     Abstract available


  635. KHAN R, Roy N, Choi K, Lee SW, et al
    Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis.
    PLoS One. 2018;13:e0192277.
    PubMed     Abstract available


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    Identification of fungi in shotgun metagenomics datasets.
    PLoS One. 2018;13:e0192898.
    PubMed     Abstract available


  637. DOUILLARD FP, Mora D, Eijlander RT, Wels M, et al
    Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.
    PLoS One. 2018;13:e0192452.
    PubMed     Abstract available


  638. KAMAL AHM, Fessler MB, Chowdhury SM
    Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages.
    PLoS One. 2018;13:e0193104.
    PubMed     Abstract available


  639. VELEZ G, Machlab DA, Tang PH, Sun Y, et al
    Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases.
    PLoS One. 2018;13:e0193250.
    PubMed     Abstract available


  640. COSTA WJEM, Amorim PF, Mattos JLO
    Synchronic historical patterns of species diversification in seasonal aplocheiloid killifishes of the semi-arid Brazilian Caatinga.
    PLoS One. 2018;13:e0193021.
    PubMed     Abstract available


  641. TILAHUN M, Ameni G, Desta K, Zewude A, et al
    Molecular epidemiology and drug sensitivity pattern of Mycobacterium tuberculosis strains isolated from pulmonary tuberculosis patients in and around Ambo Town, Central Ethiopia.
    PLoS One. 2018;13:e0193083.
    PubMed     Abstract available


  642. HOU L, Ji Z, Wang G, Wang J, et al
    Identification and characterization of microRNAs in the intestinal tissues of sheep (Ovis aries).
    PLoS One. 2018;13:e0193371.
    PubMed     Abstract available


  643. DIETRICH MA, Ciereszko A
    Proteomic characterization of fresh spermatozoa and supernatant after cryopreservation in relation to freezability of carp (Cyprinus carpio L) semen.
    PLoS One. 2018;13:e0192972.
    PubMed     Abstract available


  644. KORSHUNOVA T, Lundin K, Malmberg K, Picton B, et al
    First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution.
    PLoS One. 2018;13:e0192177.
    PubMed     Abstract available


  645. PRIETO-TORRES DA, Cuervo AM, Bonaccorso E
    On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes.
    PLoS One. 2018;13:e0191598.
    PubMed     Abstract available


  646. BHOGOJU S, Nahashon S, Wang X, Darris C, et al
    A comparative analysis of microbial profile of Guinea fowl and chicken using metagenomic approach.
    PLoS One. 2018;13:e0191029.
    PubMed     Abstract available


  647. TEIXEIRA MA, Sela N, Atamian HS, Bao E, et al
    Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.
    PLoS One. 2018;13:e0193239.
    PubMed     Abstract available


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    Integrated analysis of tumor differentiation genes in pancreatic adenocarcinoma.
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    PubMed     Abstract available


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    Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species.
    PLoS One. 2018;13:e0192678.
    PubMed     Abstract available


  650. PAGNUCO IA, Revuelta MV, Bondino HG, Brun M, et al
    HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold.
    PLoS One. 2018;13:e0193757.
    PubMed     Abstract available


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    The phylogenetic analysis of VP1 genomic region in foot-and-mouth disease virus serotype O isolates in Sri Lanka reveals the existence of 'Srl-97', a newly named endemic lineage.
    PLoS One. 2018;13:e0194077.
    PubMed     Abstract available


  652. CHAVARIE L, Howland KL, Harris LN, Hansen MJ, et al
    From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?
    PLoS One. 2018;13:e0193925.
    PubMed     Abstract available


  653. JOHNSON M, Alsaleh N, Mendoza RP, Persaud I, et al
    Genomic and transcriptomic comparison of allergen and silver nanoparticle-induced mast cell degranulation reveals novel non-immunoglobulin E mediated mechanisms.
    PLoS One. 2018;13:e0193499.
    PubMed     Abstract available


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    Determining the geographic origin of invasive populations of the mealybug Planococcus ficus based on molecular genetic analysis.
    PLoS One. 2018;13:e0193852.
    PubMed     Abstract available


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    Life in a rock pool: Radiation and population genetics of myxozoan parasites in hosts inhabiting restricted spaces.
    PLoS One. 2018;13:e0194042.
    PubMed     Abstract available


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    Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle.
    PLoS One. 2018;13:e0193701.
    PubMed     Abstract available


  657. ZHANG Z, Du H, Bai L, Yang C, et al
    Whole genome bisulfite sequencing reveals unique adaptations to high-altitude environments in Tibetan chickens.
    PLoS One. 2018;13:e0193597.
    PubMed     Abstract available


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    Assessment of genetic diversity, population structure, and gene flow of tigers (Panthera tigris tigris) across Nepal's Terai Arc Landscape.
    PLoS One. 2018;13:e0193495.
    PubMed     Abstract available


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    Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions.
    PLoS One. 2018;13:e0193739.
    PubMed     Abstract available


  660. ZHANG X, Chen D, Xu G, Huang W, et al
    Molecular epidemiology and drug resistant mechanism in carbapenem-resistant Klebsiella pneumoniae isolated from pediatric patients in Shanghai, China.
    PLoS One. 2018;13:e0194000.
    PubMed     Abstract available


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    Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.
    PLoS One. 2018;13:e0193949.
    PubMed     Abstract available


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    Phylogeography of Daphnia magna Straus (Crustacea: Cladocera) in Northern Eurasia: Evidence for a deep longitudinal split between mitochondrial lineages.
    PLoS One. 2018;13:e0194045.
    PubMed     Abstract available


  663. ZENG L, Kortschak RD, Raison JM, Bertozzi T, et al
    Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies.
    PLoS One. 2018;13:e0193588.
    PubMed     Abstract available


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    Maternal DNA lineages at the gate of Europe in the 10th century AD.
    PLoS One. 2018;13:e0193578.
    PubMed     Abstract available


  665. AGARAS BC, Iriarte A, Valverde CF
    Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.
    PLoS One. 2018;13:e0194088.
    PubMed     Abstract available


  666. XING M, Sun C, Li H, Hu S, et al
    Integrated analysis of transcriptome and proteome changes related to the Ogura cytoplasmic male sterility in cabbage.
    PLoS One. 2018;13:e0193462.
    PubMed     Abstract available


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    Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients.
    PLoS One. 2018;13:e0193943.
    PubMed     Abstract available


  668. SKEIE JM, Aldrich BT, Goldstein AS, Schmidt GA, et al
    Proteomic analysis of corneal endothelial cell-descemet membrane tissues reveals influence of insulin dependence and disease severity in type 2 diabetes mellitus.
    PLoS One. 2018;13:e0192287.
    PubMed     Abstract available


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    Why West? Comparisons of clinical, genetic and molecular features of infants with and without spasms.
    PLoS One. 2018;13:e0193599.
    PubMed     Abstract available


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    Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics.
    PLoS One. 2018;13:e0193799.
    PubMed     Abstract available


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    Transcriptome analysis of nitric oxide-responsive genes in upland cotton (Gossypium hirsutum).
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    PubMed     Abstract available


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    Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
    PLoS One. 2018;13:e0192165.
    PubMed     Abstract available


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    Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein.
    PLoS One. 2018;13:e0193170.
    PubMed     Abstract available


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    Recombination and peak jumping.
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    PubMed     Abstract available


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    Computational de novo discovery of distinguishing genes for biological processes and cell types in complex tissues.
    PLoS One. 2018;13:e0193067.
    PubMed     Abstract available


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    Genomic diversity of Taylorella equigenitalis introduced into the United States from 1978 to 2012.
    PLoS One. 2018;13:e0194253.
    PubMed     Abstract available


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    The influence of transcript assembly on the proteogenomics discovery of microproteins.
    PLoS One. 2018;13:e0194518.
    PubMed     Abstract available


  678. GELDENHUYS M, Mortlock M, Weyer J, Bezuidt O, et al
    A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa.
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    PubMed     Abstract available


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    Detection of genomic structural variations in Guizhou indigenous pigs and the comparison with other breeds.
    PLoS One. 2018;13:e0194282.
    PubMed     Abstract available


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    Predicting protein complexes using a supervised learning method combined with local structural information.
    PLoS One. 2018;13:e0194124.
    PubMed     Abstract available


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    Comparison of secretome from osteoblasts derived from sclerotic versus non-sclerotic subchondral bone in OA: A pilot study.
    PLoS One. 2018;13:e0194591.
    PubMed     Abstract available


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    A complete logical approach to resolve the evolution and dynamics of mitochondrial genome in bilaterians.
    PLoS One. 2018;13:e0194334.
    PubMed     Abstract available


  683. VISSER JH, Bennett NC, Jansen van Vuuren B
    Spatial genetic diversity in the Cape mole-rat, Georychus capensis: Extreme isolation of populations in a subterranean environment.
    PLoS One. 2018;13:e0194165.
    PubMed     Abstract available


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    Antifungal activity, main active components and mechanism of Curcuma longa extract against Fusarium graminearum.
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    PubMed     Abstract available


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    Genotyping and spatial analysis of pulmonary tuberculosis and diabetes cases in the state of Veracruz, Mexico.
    PLoS One. 2018;13:e0193911.
    PubMed     Abstract available


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    Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy.
    PLoS One. 2018;13:e0194225.
    PubMed     Abstract available


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    The genetic heterogeneity of Arab populations as inferred from HLA genes.
    PLoS One. 2018;13:e0192269.
    PubMed     Abstract available


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    Pheromone expression reveals putative mechanism of unisexuality in a saprobic ascomycete fungus.
    PLoS One. 2018;13:e0192517.
    PubMed     Abstract available


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    Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue.
    PLoS One. 2018;13:e0193792.
    PubMed     Abstract available


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    Personal microbiome analysis improves student engagement and interest in Immunology, Molecular Biology, and Genomics undergraduate courses.
    PLoS One. 2018;13:e0193696.
    PubMed     Abstract available


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    Vertically distinct microbial communities in the Mariana and Kermadec trenches.
    PLoS One. 2018;13:e0195102.
    PubMed     Abstract available


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    Xome-Blender: A novel cancer genome simulator.
    PLoS One. 2018;13:e0194472.
    PubMed     Abstract available


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    Adaptive differentiation of Festuca rubra along a climate gradient revealed by molecular markers and quantitative traits.
    PLoS One. 2018;13:e0194670.
    PubMed     Abstract available


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    From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results.
    PLoS One. 2018;13:e0193515.
    PubMed     Abstract available


  695. BAMBHROLIYA A, Van Wyhe RD, Kumar S, Debeb BG, et al
    Gene set analysis of post-lactational mammary gland involution gene signatures in inflammatory and triple-negative breast cancer.
    PLoS One. 2018;13:e0192689.
    PubMed     Abstract available


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    Widespread domain-like perturbations of DNA methylation in whole blood of Down syndrome neonates.
    PLoS One. 2018;13:e0194938.
    PubMed     Abstract available


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    Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients.
    PLoS One. 2018;13:e0195006.
    PubMed     Abstract available


  698. CARTMELL KB, Sterba KR, Pickett K, Zapka J, et al
    Availability of patient-centered cancer support services: A statewide survey of cancer centers.
    PLoS One. 2018;13:e0194649.
    PubMed     Abstract available


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    Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen.
    PLoS One. 2018;13:e0194616.
    PubMed     Abstract available


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    Neisseria Heparin Binding Antigen is targeted by the human alternative pathway C3-convertase.
    PLoS One. 2018;13:e0194662.
    PubMed     Abstract available


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    Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs.
    PLoS One. 2018;13:e0194398.
    PubMed     Abstract available


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    Distinct transcriptomic changes in E14.5 mouse skeletal muscle lacking RYR1 or Cav1.1 converge at E18.5.
    PLoS One. 2018;13:e0194428.
    PubMed     Abstract available


  703. DA SILVA M, Noll FB, E Castro ACM
    Phylogeographic analysis reveals high genetic structure with uniform phenotypes in the paper wasp Protonectarina sylveirae (Hymenoptera: Vespidae).
    PLoS One. 2018;13:e0194424.
    PubMed     Abstract available


  704. GARRIS HW, Baldwin SA, Taylor J, Gurr DB, et al
    Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment.
    PLoS One. 2018;13:e0196032.
    PubMed     Abstract available


  705. ROSLI R, Amiruddin N, Ab Halim MA, Chan PL, et al
    Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.
    PLoS One. 2018;13:e0194792.
    PubMed     Abstract available


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    RNA-Seq reveals differentially expressed genes affecting polyunsaturated fatty acids percentage in the Huangshan Black chicken population.
    PLoS One. 2018;13:e0195132.
    PubMed     Abstract available


  707. SCHUSTER TM, Setaro SD, Tibbits JFG, Batty EL, et al
    Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae).
    PLoS One. 2018;13:e0195034.
    PubMed     Abstract available


  708. CHAI JH, Lee CK, Lee HK, Wong N, et al
    Cost-benefit analysis of introducing next-generation sequencing (metagenomic) pathogen testing in the setting of pyrexia of unknown origin.
    PLoS One. 2018;13:e0194648.
    PubMed     Abstract available


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    Pharmacogenetic landscape of Metabolic Syndrome components drug response in Tunisia and comparison with worldwide populations.
    PLoS One. 2018;13:e0194842.
    PubMed     Abstract available


  710. SELA I, Wolf YI, Koonin EV
    Estimation of universal and taxon-specific parameters of prokaryotic genome evolution.
    PLoS One. 2018;13:e0195571.
    PubMed     Abstract available


  711. HU Y, Hao X, Chen L, Akhberdi O, et al
    Galpha-cAMP/PKA pathway positively regulates pigmentation, chaetoglobosin A biosynthesis and sexual development in Chaetomium globosum.
    PLoS One. 2018;13:e0195553.
    PubMed     Abstract available


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    Proteomic analysis of human epileptic neocortex predicts vascular and glial changes in epileptic regions.
    PLoS One. 2018;13:e0195639.
    PubMed     Abstract available


  713. ZHOU N, Katz M, Knecht W, Compagno C, et al
    Genome dynamics and evolution in yeasts: A long-term yeast-bacteria competition experiment.
    PLoS One. 2018;13:e0194911.
    PubMed     Abstract available


  714. FERREIRA DA SILVA MJ, Kopp GH, Casanova C, Godinho R, et al
    Disrupted dispersal and its genetic consequences: Comparing protected and threatened baboon populations (Papio papio) in West Africa.
    PLoS One. 2018;13:e0194189.
    PubMed     Abstract available


  715. MAHMOUD M, Zeng Y, Shirali M, Yin T, et al
    Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens.
    PLoS One. 2018;13:e0194374.
    PubMed     Abstract available


  716. GOLIZEH M, Melendez-Pena CE, Ward BJ, Saeed S, et al
    Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging.
    PLoS One. 2018;13:e0195148.
    PubMed     Abstract available


  717. UMAIR M, Abbasi BH, Sharif S, Alam MM, et al
    High prevalence of G3 rotavirus in hospitalized children in Rawalpindi, Pakistan during 2014.
    PLoS One. 2018;13:e0195947.
    PubMed     Abstract available


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    A remark on copy number variation detection methods.
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    PubMed     Abstract available


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    Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America.
    PLoS One. 2018;13:e0196130.
    PubMed     Abstract available


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    Identifying artificial selection signals in the chicken genome.
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    PubMed     Abstract available


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    Hidden diversity: Phylogeography of genus Ototyphlonemertes Diesing, 1863 (Ototyphlonemertidae: Hoplonemertea) reveals cryptic species and high diversity in Chilean populations.
    PLoS One. 2018;13:e0195833.
    PubMed     Abstract available


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    Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species' global distribution: Combining classical population genetics and network analyses.
    PLoS One. 2018;13:e0194901.
    PubMed     Abstract available


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    Changes in maize transcriptome in response to maize Iranian mosaic virus infection.
    PLoS One. 2018;13:e0194592.
    PubMed     Abstract available


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    Genetic diversity of Spanish Prunus domestica L. germplasm reveals a complex genetic structure underlying.
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    PubMed     Abstract available


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    Weak population structure and no genetic erosion in Pilosocereus aureispinus: A microendemic and threatened cactus species from eastern Brazil.
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    PubMed     Abstract available


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    Colorectal cancer patients with different C-reactive protein levels and 5-year survival times can be differentiated with quantitative serum proteomics.
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    PubMed     Abstract available


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    Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.
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    PubMed     Abstract available


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    A snapshot of gut microbiota of an adult urban population from Western region of India.
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    PubMed     Abstract available


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    A nested mixture model for genomic prediction using whole-genome SNP genotypes.
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    PubMed     Abstract available


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    Bacillus cereus, a serious cause of nosocomial infections: Epidemiologic and genetic survey.
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    PubMed     Abstract available


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    Ubiquitin-dependent proteolysis of CXCL7 leads to posterior longitudinal ligament ossification.
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    PubMed     Abstract available


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    Evolutionary and genomic analysis of the caleosin/peroxygenase (CLO/PXG) gene/protein families in the Viridiplantae.
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    PubMed     Abstract available


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    Combining different proteomic approaches to resolve complexity of the milk protein fraction of dromedary, Bactrian camels and hybrids, from different regions of Kazakhstan.
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    PubMed     Abstract available


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    A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
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    PubMed     Abstract available


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    False discovery rate estimation and heterobifunctional cross-linkers.
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    PubMed     Abstract available


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    Proteomic analysis of watery saliva secreted by white-backed planthopper, Sogatella furcifera.
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    PubMed     Abstract available


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    Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.
    PLoS One. 2018;13:e0195860.
    PubMed     Abstract available


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    Are endemics functionally distinct? Leaf traits of native and exotic woody species in a New Zealand forest.
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    PubMed     Abstract available


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    Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish.
    PLoS One. 2018;13:e0196544.
    PubMed     Abstract available


  740. KOSTRIKIS LG, Hezka J, Stylianou DC, Kostaki E, et al
    HIV-1 transmission networks across Cyprus (2010-2012).
    PLoS One. 2018;13:e0195660.
    PubMed     Abstract available


  741. PUENTE C, Abian-Vicen J, Del Coso J, Lara B, et al
    The CYP1A2 -163C>A polymorphism does not alter the effects of caffeine on basketball performance.
    PLoS One. 2018;13:e0195943.
    PubMed     Abstract available


  742. RAINE A, Liljedahl U, Nordlund J
    Data quality of whole genome bisulfite sequencing on Illumina platforms.
    PLoS One. 2018;13:e0195972.
    PubMed     Abstract available


  743. MARTINS MP, Gomes EV, Sanches PR, Pedersoli WR, et al
    mus-52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability.
    PLoS One. 2018;13:e0195871.
    PubMed     Abstract available


  744. BETIKU OC, Yeoman CJ, Gaylord TG, Americus B, et al
    Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout.
    PLoS One. 2018;13:e0195967.
    PubMed     Abstract available


  745. MOHAMED RAMLI N, Giatsis C, Md Yusoff F, Verreth J, et al
    Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation.
    PLoS One. 2018;13:e0195862.
    PubMed     Abstract available


  746. RIVERA SF, Vasselon V, Ballorain K, Carpentier A, et al
    DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior.
    PLoS One. 2018;13:e0195770.
    PubMed     Abstract available


  747. GOG JR, Lever AML, Skittrall JP
    A new method for detecting signal regions in ordered sequences of real numbers, and application to viral genomic data.
    PLoS One. 2018;13:e0195763.
    PubMed     Abstract available


  748. DOLMATOV IY, Afanasyev SV, Boyko AV
    Molecular mechanisms of fission in echinoderms: Transcriptome analysis.
    PLoS One. 2018;13:e0195836.
    PubMed     Abstract available


  749. PAQUETTE SJ, Stanford K, Thomas J, Reuter T, et al
    Quantitative surveillance of shiga toxins 1 and 2, Escherichia coli O178 and O157 in feces of western-Canadian slaughter cattle enumerated by droplet digital PCR with a focus on seasonality and slaughterhouse location.
    PLoS One. 2018;13:e0195880.
    PubMed     Abstract available


  750. TRAMUTO F, Maida CM, Pojero F, Colomba GME, et al
    Case-based surveillance of measles in Sicily during 2012-2017: The changing molecular epidemiology and implications for vaccine strategies.
    PLoS One. 2018;13:e0195256.
    PubMed     Abstract available


  751. SPITSYN VM, Kondakov AV, Bolotov NI, Thi Pham N, et al
    DNA barcoding unravels contrasting evolutionary history of two widespread Asian tiger moth species during the Late Pleistocene.
    PLoS One. 2018;13:e0194200.
    PubMed     Abstract available


  752. BRINKMAN NE, Villegas EN, Garland JL, Keely SP, et al
    Reducing inherent biases introduced during DNA viral metagenome analyses of municipal wastewater.
    PLoS One. 2018;13:e0195350.
    PubMed     Abstract available


  753. MENOTTA M, Orazi S, Gioacchini AM, Spapperi C, et al
    Proteomics and transcriptomics analyses of ataxia telangiectasia cells treated with Dexamethasone.
    PLoS One. 2018;13:e0195388.
    PubMed     Abstract available


  754. CASTILLO H, Li X, Schilkey F, Smith GB, et al
    Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation.
    PLoS One. 2018;13:e0196472.
    PubMed     Abstract available


  755. WILLMANN C, Mata X, Hanghoej K, Tonasso L, et al
    Oral health status in historic population: Macroscopic and metagenomic evidence.
    PLoS One. 2018;13:e0196482.
    PubMed     Abstract available


  756. DEPRA GC, Graca WJD, Pavanelli CS, Avelino GS, et al
    Molecular phylogeny of Planaltina Bohlke (Characidae: Stevardiinae) and comments on the definition and geographic distribution of the genus, with description of a new species.
    PLoS One. 2018;13:e0196291.
    PubMed     Abstract available


  757. ILIE DE, Kusza S, Sauer M, Gavojdian D, et al
    Genetic characterization of indigenous goat breeds in Romania and Hungary with a special focus on genetic resistance to mastitis and gastrointestinal parasitism based on 40 SNPs.
    PLoS One. 2018;13:e0197051.
    PubMed     Abstract available


  758. MOYANO E, Martinez-Rivas FJ, Blanco-Portales R, Molina-Hidalgo FJ, et al
    Genome-wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria x ananassa fruits.
    PLoS One. 2018;13:e0196953.
    PubMed     Abstract available


  759. YU Z, Boehm CR, Hibberd JM, Abell C, et al
    Droplet-based microfluidic analysis and screening of single plant cells.
    PLoS One. 2018;13:e0196810.
    PubMed     Abstract available


  760. ZHANG T, Xu J, Deng S, Zhou F, et al
    Core signaling pathways in ovarian cancer stem cell revealed by integrative analysis of multi-marker genomics data.
    PLoS One. 2018;13:e0196351.
    PubMed     Abstract available


  761. DELEYE L, Gansemans Y, De Coninck D, Van Nieuwerburgh F, et al
    Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods.
    PLoS One. 2018;13:e0196334.
    PubMed     Abstract available


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    Genetic structure of South African Nguni (Zulu) sheep populations reveals admixture with exotic breeds.
    PLoS One. 2018;13:e0196276.
    PubMed     Abstract available


  763. DHARANIPRAGADA P, Vogeti S, Parekh N
    iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
    PLoS One. 2018;13:e0195334.
    PubMed     Abstract available


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    Inbreeding estimates in human populations: Applying new approaches to an admixed Brazilian isolate.
    PLoS One. 2018;13:e0196360.
    PubMed     Abstract available


  765. FREITAS AC, Hill JE
    Bifidobacteria isolated from vaginal and gut microbiomes are indistinguishable by comparative genomics.
    PLoS One. 2018;13:e0196290.
    PubMed     Abstract available


  766. ZHOU S, Zhang J, Ma F, Tang C, et al
    Investigation of lignocellulolytic enzymes during different growth phases of Ganoderma lucidum strain G0119 using genomic, transcriptomic and secretomic analyses.
    PLoS One. 2018;13:e0198404.
    PubMed     Abstract available


  767. YANG L, Gao Q, Dai J, Yuan G, et al
    Comparative transcriptome analysis of silkworm, Bombyx mori colleterial gland suggests their functional role in mucous secretion.
    PLoS One. 2018;13:e0198077.
    PubMed     Abstract available


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    A repetitive mutation and selection system for bacterial evolution to increase the specific affinity to pancreatic cancer cells.
    PLoS One. 2018;13:e0198157.
    PubMed     Abstract available


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    Elevated Nrf-2 responses are insufficient to mitigate protein carbonylation in hepatospecific PTEN deletion mice.
    PLoS One. 2018;13:e0198139.
    PubMed     Abstract available


  770. ROOIJAKKERS BJM, Ikonen MS, Linder MB
    Fungal-type carbohydrate binding modules from the coccolithophore Emiliania huxleyi show binding affinity to cellulose and chitin.
    PLoS One. 2018;13:e0197875.
    PubMed     Abstract available


  771. SMITH SA, Brown JW, Walker JF
    So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.
    PLoS One. 2018;13:e0197433.
    PubMed     Abstract available


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    Inner ear exosomes and their potential use as biomarkers.
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    PubMed     Abstract available


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    Genetic variation and population structure of Diaphorina citri using cytochrome oxidase I sequencing.
    PLoS One. 2018;13:e0198399.
    PubMed     Abstract available


  774. HARDISON DR, Holland WC, Darius HT, Chinain M, et al
    Investigation of ciguatoxins in invasive lionfish from the greater caribbean region: Implications for fishery development.
    PLoS One. 2018;13:e0198358.
    PubMed     Abstract available


  775. FLATAU L, Reitt M, Duttge G, Lenk C, et al
    Genomic information and a person's right not to know: A closer look at variations in hypothetical informational preferences in a German sample.
    PLoS One. 2018;13:e0198249.
    PubMed     Abstract available


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    Genetic structure and dispersal patterns in Limnoria nagatai (Limnoriidae, Isopoda) dwelling in non-buoyant kelps, Eisenia bicyclis and E. arborea, in Japan.
    PLoS One. 2018;13:e0198451.
    PubMed     Abstract available


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    Genome-wide identification and expression profile analysis of the NAC transcription factor family during abiotic and biotic stress in woodland strawberry.
    PLoS One. 2018;13:e0197892.
    PubMed     Abstract available


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    Immunoproteomic identification of anti-C9 autoimmune antibody in patients with seronegative obstetric antiphospholipid syndrome.
    PLoS One. 2018;13:e0198472.
    PubMed     Abstract available


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    Genomic integration and ligand-dependent activation of the human estrogen receptor alpha in the crustacean Daphnia magna.
    PLoS One. 2018;13:e0198023.
    PubMed     Abstract available


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    Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: The role of the last glaciation.
    PLoS One. 2018;13:e0197611.
    PubMed     Abstract available


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    Proteomic analysis of the response of Trichinella spiralis muscle larvae to exogenous nitric oxide.
    PLoS One. 2018;13:e0198205.
    PubMed     Abstract available


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    Dam trout: Genetic variability in Oncorhynchus mykiss above and below barriers in three Columbia River systems prior to restoring migrational access.
    PLoS One. 2018;13:e0197571.
    PubMed     Abstract available


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    Decreasing prevalence of Hepatitis B and absence of Hepatitis C Virus infection in the Warao indigenous population of Venezuela.
    PLoS One. 2018;13:e0197662.
    PubMed     Abstract available


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    Virus survey in populations of two subspecies of bent-winged bats (Miniopterus orianae bassanii and oceanensis) in south-eastern Australia reveals a high prevalence of diverse herpesviruses.
    PLoS One. 2018;13:e0197625.
    PubMed     Abstract available


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    Loci under selection and markers associated with host plant and host-related strains shape the genetic structure of Brazilian populations of Spodoptera frugiperda (Lepidoptera, Noctuidae).
    PLoS One. 2018;13:e0197378.
    PubMed     Abstract available


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    Genomic structure, expression, and functional characterization of checkpoint kinase 1 from Penaeus monodon.
    PLoS One. 2018;13:e0198036.
    PubMed     Abstract available


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    Mitochondrial genome sequencing of a vermivorous cone snail Conus quercinus supports the correlative analysis between phylogenetic relationships and dietary types of Conus species.
    PLoS One. 2018;13:e0193053.
    PubMed     Abstract available


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    Bayesian variable selection with graphical structure learning: Applications in integrative genomics.
    PLoS One. 2018;13:e0195070.
    PubMed     Abstract available


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    Hypobaric hypoxia induced renal damage is mediated by altering redox pathway.
    PLoS One. 2018;13:e0195701.
    PubMed     Abstract available


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    Deconvolution of expression microarray data reveals 131I-induced responses otherwise undetected in thyroid tissue.
    PLoS One. 2018;13:e0197911.
    PubMed     Abstract available


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    Identification of a contact zone and hybridization for two subspecies of the American pika (Ochotona princeps) within a single protected area.
    PLoS One. 2018;13:e0199032.
    PubMed     Abstract available


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    HIV-1 diversity among young women in rural South Africa: HPTN 068.
    PLoS One. 2018;13:e0198999.
    PubMed     Abstract available


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    Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice.
    PLoS One. 2018;13:e0199077.
    PubMed     Abstract available


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    Multigene phylogeny supports diversification of four-eyed fishes and one-sided livebearers (Cyprinodontiformes: Anablepidae) related to major South American geological events.
    PLoS One. 2018;13:e0199201.
    PubMed     Abstract available


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    Low-dose ionizing radiation exposure represses the cell cycle and protein synthesis pathways in in vitro human primary keratinocytes and U937 cell lines.
    PLoS One. 2018;13:e0199117.
    PubMed     Abstract available


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    Elucidating biogeographical patterns in Australian native canids using genome wide SNPs.
    PLoS One. 2018;13:e0198754.
    PubMed     Abstract available


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    Comparative analysis of the male inflorescence transcriptome profiles of an ms22 mutant of maize.
    PLoS One. 2018;13:e0199437.
    PubMed     Abstract available


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    Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells.
    PLoS One. 2018;13:e0199349.
    PubMed     Abstract available


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    A common molecular signature of patients with sickle cell disease revealed by microarray meta-analysis and a genome-wide association study.
    PLoS One. 2018;13:e0199461.
    PubMed     Abstract available


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    Reappraisal of the systematics of Microglanis cottoides (Siluriformes, Pseudopimelodidae), a catfish from southern Brazil.
    PLoS One. 2018;13:e0199963.
    PubMed     Abstract available


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    Computational analyses of obesity associated loci generated by genome-wide association studies.
    PLoS One. 2018;13:e0199987.
    PubMed     Abstract available


  802. HEIDEN BT, Chen G, Hermann M, Brown RKJ, et al
    18F-FDG PET intensity correlates with a hypoxic gene signature and other oncogenic abnormalities in operable non-small cell lung cancer.
    PLoS One. 2018;13:e0199970.
    PubMed     Abstract available


  803. MARETE A, Lund MS, Boichard D, Ramayo-Caldas Y, et al
    A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds.
    PLoS One. 2018;13:e0199931.
    PubMed     Abstract available


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    Clipperton Atoll as a model to study small marine populations: Endemism and the genomic consequences of small population size.
    PLoS One. 2018;13:e0198901.
    PubMed     Abstract available


  805. CHENG Y, Zhao X, Chen Y, Li Y, et al
    Circulating immune complexome analysis identified anti-tubulin-alpha-1c as an inflammation associated autoantibody with promising diagnostic value for Behcet's Disease.
    PLoS One. 2018;13:e0199047.
    PubMed     Abstract available


  806. LI X, Naser SA, Khaled A, Hu H, et al
    When old metagenomic data meet newly sequenced genomes, a case study.
    PLoS One. 2018;13:e0198773.
    PubMed     Abstract available


  807. YAN L, Zhao C, Zhang J, Qiu L, et al
    Transcriptomic analyses of gastrointestinal function in the "dwarf" and "medium" forms of Sthenoteuthis oualaniensis during sexual maturation.
    PLoS One. 2018;13:e0199053.
    PubMed     Abstract available


  808. SOARES MARTINS T, Catita J, Martins Rosa I, A B da Cruz E Silva O, et al
    Exosome isolation from distinct biofluids using precipitation and column-based approaches.
    PLoS One. 2018;13:e0198820.
    PubMed     Abstract available


  809. TRAN L, Hamp T, Rost B
    ProfPPIdb: Pairs of physical protein-protein interactions predicted for entire proteomes.
    PLoS One. 2018;13:e0199988.
    PubMed     Abstract available


  810. HAGENAUER MH, Schulmann A, Li JZ, Vawter MP, et al
    Inference of cell type content from human brain transcriptomic datasets illuminates the effects of age, manner of death, dissection, and psychiatric diagnosis.
    PLoS One. 2018;13:e0200003.
    PubMed     Abstract available


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    Improving comprehension of genetic counseling for hereditary breast and ovarian cancer clients with a visual tool.
    PLoS One. 2018;13:e0200559.
    PubMed     Abstract available


  812. PISAMAI S, Roytrakul S, Phaonakrop N, Jaresitthikunchai J, et al
    Proteomic analysis of canine oral tumor tissues using MALDI-TOF mass spectrometry and in-gel digestion coupled with mass spectrometry (GeLC MS/MS) approaches.
    PLoS One. 2018;13:e0200619.
    PubMed     Abstract available


  813. GOSZCZYNSKI D, Molina A, Teran E, Morales-Durand H, et al
    Runs of homozygosity in a selected cattle population with extremely inbred bulls: Descriptive and functional analyses revealed highly variable patterns.
    PLoS One. 2018;13:e0200069.
    PubMed     Abstract available


  814. LIU W, Cheng C, Lin Y, XuHan X, et al
    Genome-wide identification and characterization of mRNAs and lncRNAs involved in cold stress in the wild banana (Musa itinerans).
    PLoS One. 2018;13:e0200002.
    PubMed     Abstract available


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    Molecular phylogeography of East Asian Boea clarkeana (Gesneriaceae) in relation to habitat restriction.
    PLoS One. 2018;13:e0199780.
    PubMed     Abstract available


  816. LAUKKANEN L, Kalske A, Muola A, Leimu R, et al
    Genetic drift precluded adaptation of an insect seed predator to a novel host plant in a long-term selection experiment.
    PLoS One. 2018;13:e0198869.
    PubMed     Abstract available


  817. ZHANG SY, Olasege BS, Liu DY, Wang QS, et al
    The genetic connectedness calculated from genomic information and its effect on the accuracy of genomic prediction.
    PLoS One. 2018;13:e0201400.
    PubMed     Abstract available


  818. TIAN X, Wang Z, Zhang Q, Ci H, et al
    Genome-wide transcriptome analysis of the salt stress tolerance mechanism in Rosa chinensis.
    PLoS One. 2018;13:e0200938.
    PubMed     Abstract available


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    Discovery and characterization of novel Aspergillus fumigatus mycoviruses.
    PLoS One. 2018;13:e0200511.
    PubMed     Abstract available


  820. YOO B, Greninger P, Stein GT, Egan RK, et al
    Potent and selective effect of the mir-10b inhibitor MN-anti-mir10b in human cancer cells of diverse primary disease origin.
    PLoS One. 2018;13:e0201046.
    PubMed     Abstract available


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    Response mechanisms induced by exposure to high temperature in anthers from thermo-tolerant and thermo-sensitive tomato plants: A proteomic perspective.
    PLoS One. 2018;13:e0201027.
    PubMed     Abstract available


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    iTRAQ-based quantitative proteomic analysis of alterations in the intestine of Hu sheep under weaning stress.
    PLoS One. 2018;13:e0200680.
    PubMed     Abstract available


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    Molecular epidemiology and spatiotemporal dynamics of norovirus associated with sporadic acute gastroenteritis during 2013-2017, Zhoushan Islands, China.
    PLoS One. 2018;13:e0200911.
    PubMed     Abstract available


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    Reconciling species diversity in a tropical plant clade (Canarium, Burseraceae).
    PLoS One. 2018;13:e0198882.
    PubMed     Abstract available


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    Transcriptomic and proteomic analysis reveals wall-associated and glucan-degrading proteins with potential roles in Phytophthora infestans sexual spore development.
    PLoS One. 2018;13:e0198186.
    PubMed     Abstract available


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    Proteomic response of hybrid wild rice to cold stress at the seedling stage.
    PLoS One. 2018;13:e0198675.
    PubMed     Abstract available


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    Using genome-scale metabolic models to compare serovars of the foodborne pathogen Listeria monocytogenes.
    PLoS One. 2018;13:e0198584.
    PubMed     Abstract available


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    New findings on SNP variants of human protein L-isoaspartyl methyltransferase that affect catalytic activity, thermal stability, and aggregation.
    PLoS One. 2018;13:e0198266.
    PubMed     Abstract available


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    The collaborative effect of scientific meetings: A study of the International Milk Genomics Consortium.
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    PubMed     Abstract available


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    Multivariate analysis of genomics data to identify potential pleiotropic genes for type 2 diabetes, obesity and dyslipidemia using Meta-CCA and gene-based approach.
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    PubMed     Abstract available


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    Genomic characterization of NDM-1 and 5, and OXA-181 carbapenemases in uropathogenic Escherichia coli isolates from Riyadh, Saudi Arabia.
    PLoS One. 2018;13:e0201613.
    PubMed     Abstract available


  832. MADDOCK J, Wulaningsih W, Fernandez JC, Ploubidis GB, et al
    Associations between body size, nutrition and socioeconomic position in early life and the epigenome: A systematic review.
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    PubMed     Abstract available


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    Phylogeography of the gall-inducing micromoth Eucecidoses minutanus Brethes (Cecidosidae) reveals lineage diversification associated with the Neotropical Peripampasic Orogenic Arc.
    PLoS One. 2018;13:e0201251.
    PubMed     Abstract available


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    Network analysis of inflammatory responses to sepsis by neutrophils and peripheral blood mononuclear cells.
    PLoS One. 2018;13:e0201674.
    PubMed     Abstract available


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    Proteomic analysis identifies transcriptional cofactors and homeobox transcription factors as TBX18 binding proteins.
    PLoS One. 2018;13:e0200964.
    PubMed     Abstract available


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    Assessing genetic architecture and signatures of selection of dual purpose Gir cattle populations using genomic information.
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    Bridging immunogenetics and immunoproteomics: Model positional scanning library analysis for Major Histocompatibility Complex class II DQ in Tursiops truncatus.
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    An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
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    PubMed     Abstract available


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    Identification and expression analysis of a microRNA cluster derived from pre-ribosomal RNA in Papaver somniferum L. and Papaver bracteatum L.
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    PubMed     Abstract available


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    BRCA1 founder mutations and beyond in the Polish population: A single-institution BRCA1/2 next-generation sequencing study.
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    PubMed     Abstract available


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    Signs of continental ancestry in urban populations of Peru through autosomal STR loci and mitochondrial DNA typing.
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    Canine filariasis in the Amazon: Species diversity and epidemiology of these emergent and neglected zoonoses.
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    Temporal dynamics of the lung and plasma viromes in lung transplant recipients.
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    PubMed     Abstract available


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    Harnessing the biological complexity of Big Data from LINCS gene expression signatures.
    PLoS One. 2018;13:e0201937.
    PubMed     Abstract available


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    Molecular epidemiology of cattle tuberculosis in Mexico through whole-genome sequencing and spoligotyping.
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    PubMed     Abstract available


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    Individual-based genetic analyses support asexual hydrochory dispersal in Zostera noltei.
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    PubMed     Abstract available


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    Enteric virome of Ethiopian children participating in a clean water intervention trial.
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    PubMed     Abstract available


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    Conservation of kinase-phosphorylation site pairings: Evidence for an evolutionarily dynamic phosphoproteome.
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    PubMed     Abstract available


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    A continental-wide molecular approach unraveling mtDNA diversity and geographic distribution of the Neotropical genus Hoplias.
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    PubMed     Abstract available


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    Identification of induced mutations in hexaploid wheat genome using exome capture assay.
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    PubMed     Abstract available


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    Dietary soybean protein ameliorates high-fat diet-induced obesity by modifying the gut microbiota-dependent biotransformation of bile acids.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    The use of in-strip digestion for fast proteomic analysis on tear fluid from dry eye patients.
    PLoS One. 2018;13:e0200702.
    PubMed     Abstract available


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    Haplotype diversity in mitochondrial DNA reveals the multiple origins of Tibetan horse.
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    PubMed     Abstract available


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    Translational proteomic study to address host protein changes during aspergillosis.
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    PubMed     Abstract available


  856. KOMATSU Y, Kasahara K, Inoue T, Lee ST, et al
    Molecular epidemiology and clinical features of extended-spectrum beta-lactamase- or carbapenemase-producing Escherichia coli bacteremia in Japan.
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    PubMed     Abstract available


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    Comparative phylogeography of amphibians and reptiles in Algeria suggests common causes for the east-west phylogeographic breaks in the Maghreb.
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    PubMed     Abstract available


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    Chemoproteomic identification of molecular targets of antifungal prototypes, thiosemicarbazide and a camphene derivative of thiosemicarbazide, in Paracoccidioides brasiliensis.
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    PubMed     Abstract available


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    Efficient genome editing using tRNA promoter-driven CRISPR/Cas9 gRNA in Aspergillus niger.
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    PubMed     Abstract available


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    The estimation of probability distribution for factor variables with many categorical values.
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    PubMed     Abstract available


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    Mitochondrial variation in subpopulations of Anopheles balabacensis Baisas in Sabah, Malaysia (Diptera: Culicidae).
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    PubMed     Abstract available


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    Optimization of protein extraction and two-dimensional gel electrophoresis profiles for the identification of Cordyceps sinensis and other similar species.
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    PubMed     Abstract available


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    Genomic analysis of an Argentinean isolate of Spodoptera frugiperda granulovirus reveals that various baculoviruses code for Lef-7 proteins with three F-box domains.
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    PubMed     Abstract available


  864. GORI M, Ebranati E, Scaltriti E, Huedo P, et al
    High-resolution diffusion pattern of human infections by Salmonella enterica serovar Napoli in Northern Italy explained through phylogeography.
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    PubMed     Abstract available


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    Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata.
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    PubMed     Abstract available


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    Kinomics toolbox-A web platform for analysis and viewing of kinomic peptide array data.
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    PubMed     Abstract available


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    Population genetic analysis of aquaculture salmonid populations in China using a 57K rainbow trout SNP array.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis.
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    PubMed     Abstract available


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    Conservation genetics of two threatened frogs from the Mambilla highlands, Nigeria.
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    PubMed     Abstract available


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    Connections and containers: Using genetic data to understand how watershed evolution and human activities influence cutthroat trout biogeography.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Proteomic analysis of rat serum revealed the effects of chronic sleep deprivation on metabolic, cardiovascular and nervous system.
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    PubMed     Abstract available


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    Characterization of a novel member of the family Caulimoviridae infecting Dioscorea nummularia in the Pacific, which may represent a new genus of dsDNA plant viruses.
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    PubMed     Abstract available


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    A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Gamma-diversity partitioning of gobiid fishes (Teleostei: Gobiidae) ensemble along of Eastern Tropical Pacific: Biological inventory, latitudinal variation and species turnover.
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    PubMed     Abstract available


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    Ultra-high-throughput DArTseq-based silicoDArT and SNP markers for genomic studies in macadamia.
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    PubMed     Abstract available


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    Investigation and source-tracing of an anthrax outbreak in Gansu Province, China.
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    PubMed     Abstract available


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    A proteomic signature that reflects pancreatic beta-cell function.
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    PubMed     Abstract available


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    Evolutionary history and spatio-temporal dynamics of dengue virus serotypes in an endemic region of Colombia.
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    PubMed     Abstract available


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    Social impact in social media: A new method to evaluate the social impact of research.
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    PubMed     Abstract available


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    Prevalence and geographical variation of Factor V Leiden in patients with cerebral venous thrombosis: A meta-analysis.
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    PubMed     Abstract available


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    Serological proteomic biomarkers to identify Paracoccidioides species and risk of relapse.
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    PubMed     Abstract available


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    Phylogeography, mitochondrial DNA diversity, and demographic history of geladas (Theropithecus gelada).
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Genomic signatures of adaptive introgression and environmental adaptation in the Sheko cattle of southwest Ethiopia.
    PLoS One. 2018;13:e0202479.
    PubMed     Abstract available


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    Phylogeographic analysis of the full genome of Sweepovirus to trace virus dispersal and introduction to Korea.
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    PubMed     Abstract available


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    Biomarker panels for characterizing microbial community biofilm formation as composite molecular process.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Alien leaf beetles (Coleoptera, Chrysomelidae) of European Russia and some general tendencies of leaf beetle invasions.
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    PubMed     Abstract available


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    Knowledge, perceptions and confidence of physicians and pharmacists towards pharmacogenetics practice in Kuwait.
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    PubMed     Abstract available


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    A hypothesis of sudden body fluid vaporization in the 79 AD victims of Vesuvius.
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    PubMed     Abstract available


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    Reverse taxonomy applied to the Brachionus calyciflorus cryptic species complex: Morphometric analysis confirms species delimitations revealed by molecular phylogenetic analysis and allows the (re)description of four species.
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    PubMed     Abstract available


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    Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea.
    PLoS One. 2018;13:e0198234.
    PubMed     Abstract available


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    The complete plastid genomes of Ophrys iricolor and O. sphegodes (Orchidaceae) and comparative analyses with other orchids.
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    PubMed     Abstract available


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    Genetic diversity and biogeography of T. officinale inferred from multi locus sequence typing approach.
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    PubMed     Abstract available


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    Molecular epidemiology and drug resistance patterns of Mycobacterium tuberculosis complex isolates from university students and the local community in Eastern Ethiopia.
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    PubMed     Abstract available


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    The significance of human respiratory syncytial virus (HRSV) in children from Ghana with acute lower respiratory tract infection: A molecular epidemiological analysis, 2006 and 2013-2014.
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    PubMed     Abstract available


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    Comparative genomics, infectivity and cytopathogenicity of Zika viruses produced by acutely and persistently infected human hematopoietic cell lines.
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    PubMed     Abstract available


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    Comparative transcriptome meta-analysis of Arabidopsis thaliana under drought and cold stress.
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    PubMed     Abstract available


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    Molecular epidemiology of enteroviruses in young children at increased risk of type 1 diabetes.
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    PubMed     Abstract available


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    But they move! Vicariance and dispersal in southern South America: Using two methods to reconstruct the biogeography of a clade of lizards endemic to South America.
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    PubMed     Abstract available


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    Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand.
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    PubMed     Abstract available


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    Genetic homogeneity of North-African goats.
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    PubMed     Abstract available


  907. WHAITE AD, Wang T, Macdonald J, Cummins SF, et al
    Major ampullate silk gland transcriptomes and fibre proteomes of the golden orb-weavers, Nephila plumipes and Nephila pilipes (Araneae: Nephilidae).
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    PubMed     Abstract available


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    WEADE: A workflow for enrichment analysis and data exploration.
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    PubMed     Abstract available


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    Epidemiology of circulating human influenza viruses from the Democratic Republic of Congo, 2015.
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    PubMed     Abstract available


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    Time-resolved proteomics of adenovirus infected cells.
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    PubMed     Abstract available


  911. HUANG QF, Van Keer J, Zhang ZY, Trenson S, et al
    Urinary proteomic signatures associated with beta-blockade and heart rate in heart transplant recipients.
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    PubMed     Abstract available


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    Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus).
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    PubMed     Abstract available


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    Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA.
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    PubMed     Abstract available


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    Forensic characterization and genetic polymorphisms of 19 X-chromosomal STRs in 1344 Han Chinese individuals and comprehensive population relationship analyses among 20 Chinese groups.
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    PubMed     Abstract available


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    Maternal genetic features of the Iron Age Tagar population from Southern Siberia (1st millennium BC).
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    PubMed     Abstract available


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    Defense responses of lentil (Lens culinaris) genotypes carrying non-allelic ascochyta blight resistance genes to Ascochyta lentis infection.
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    PubMed     Abstract available


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    Novel urinary exosomal biomarkers of acute T cell-mediated rejection in kidney transplant recipients: A cross-sectional study.
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    PubMed     Abstract available


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    Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives.
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    PubMed     Abstract available


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    Evolutionary history and spatiotemporal dynamics of the HIV-1 subtype B epidemic in Guatemala.
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    PubMed     Abstract available


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    Large-scale mitochondrial DNA analysis reveals new light on the phylogeography of Central and Eastern-European Brown hare (Lepus europaeus Pallas, 1778).
    PLoS One. 2018;13:e0204653.
    PubMed     Abstract available


  921. IM JH, Lazzaro BP
    Population genetic analysis of autophagy and phagocytosis genes in Drosophila melanogaster and D. simulans.
    PLoS One. 2018;13:e0205024.
    PubMed     Abstract available


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    Quantitative phosphoproteomic analysis identifies novel functional pathways of tumor suppressor DLC1 in estrogen receptor positive breast cancer.
    PLoS One. 2018;13:e0204658.
    PubMed     Abstract available


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    A copy number variant scan in the autochthonous Valdostana Red Pied cattle breed and comparison with specialized dairy populations.
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    PubMed     Abstract available


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    Set-up and validation of mycobacterial interspersed repetitive unit-variable number of tandem repeat (MIRU-VNTR) analysis of Mycobacterium tuberculosis using BioNumerics software.
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    PubMed     Abstract available


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    Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle.
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    PubMed     Abstract available


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    Genetic structuring of the coastal herb Arthropodium cirratum (Asparagaceae) is shaped by low gene flow, hybridization and prehistoric translocation.
    PLoS One. 2018;13:e0204943.
    PubMed     Abstract available


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    Glacial refugia and speciation in a group of wind-pollinated and -dispersed, endemic Alpine species of Helictotrichon (Poaceae).
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    PubMed     Abstract available


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    Proteome analysis of Phytomonas serpens, a phytoparasite of medical interest.
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    PubMed     Abstract available


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    Apolipoprotein E is a pancreatic extracellular factor that maintains mature beta-cell gene expression.
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    PubMed     Abstract available


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    Identification of metabolite and protein explanatory variables governing microbiome establishment and re-establishment within a cellulose-degrading anaerobic bioreactor.
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    PubMed     Abstract available


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    Efficient multi-task chemogenomics for drug specificity prediction.
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    PubMed     Abstract available


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    CRISPR deletion of MIEN1 in breast cancer cells.
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    PubMed     Abstract available


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    Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers.
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    A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways.
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    Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat.
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    Effect of ghost pepper on cell proliferation, apoptosis, senescence and global proteomic profile in human renal adenocarcinoma cells.
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    Proteomic analysis of human prostate cancer PC-3M-1E8 cells and PC-3M-2B4 cells of same origin but with different metastatic potential.
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    Development of nuclear microsatellite loci for Pinus albicaulis Engelm. (Pinaceae), a conifer of conservation concern.
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    Multi-criteria protein structure comparison and structural similarities analysis using pyMCPSC.
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    GPSuc: Global Prediction of Generic and Species-specific Succinylation Sites by aggregating multiple sequence features.
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    Understanding the cryptic introgression and mixed ancestry of Red Junglefowl in India.
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    Generation of white-eyed Daphnia magna mutants lacking scarlet function.
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    Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    PubMed     Abstract available


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    An in silico pan-genomic probe for the molecular traits behind Lactobacillus ruminis gut autochthony.
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    Rv3634c from Mycobacterium tuberculosis H37Rv encodes an enzyme with UDP-Gal/Glc and UDP-GalNAc 4-epimerase activities.
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    PubMed     Abstract available


  997. CARVAJAL-RODRIGUEZ A
    HacDivSel: Two new methods (haplotype-based and outlier-based) for the detection of divergent selection in pairs of populations.
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    PubMed     Abstract available


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    PubMed     Abstract available


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    Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots.
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    PubMed     Abstract available


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    Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes).
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    Nitrosothiol-Trapping-Based Proteomic Analysis of S-Nitrosylation in Human Lung Carcinoma Cells.
    PLoS One. 2017;12:e0169862.
    PubMed     Abstract available


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    A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data.
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    PubMed     Abstract available


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    The use of urinary proteomics in the assessment of suitability of mouse models for ageing.
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    PubMed     Abstract available


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    From east to west across the Palearctic: Phylogeography of the invasive lime leaf miner Phyllonorycter issikii (Lepidoptera: Gracillariidae) and discovery of a putative new cryptic species in East Asia.
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    PubMed     Abstract available


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    Multilocus Intron Trees Reveal Extensive Male-Biased Homogenization of Ancient Populations of Chamois (Rupicapra spp.) across Europe during Late Pleistocene.
    PLoS One. 2017;12:e0170392.
    PubMed     Abstract available


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    Blood Microbiome Quantity and the Hyperdynamic Circulation in Decompensated Cirrhotic Patients.
    PLoS One. 2017;12:e0169310.
    PubMed     Abstract available


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    Nuclear Pore-Like Structures in a Compartmentalized Bacterium.
    PLoS One. 2017;12:e0169432.
    PubMed     Abstract available


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    Colonization in North American Arid Lands: The Journey of Agarito (Berberis trifoliolata) Revealed by Multilocus Molecular Data and Packrat Midden Fossil Remains.
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    PubMed     Abstract available


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    Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice.
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    PubMed     Abstract available


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    Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture.
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    PubMed     Abstract available


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    Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses.
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    PubMed     Abstract available


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    Surveying Europe's Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA.
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    Comparative Cytogenetics between Two Important Songbird, Models: The Zebra Finch and the Canary.
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    PubMed     Abstract available


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    A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate.
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    PubMed     Abstract available


  1016. LUND KT, Riaz S, Walker MA
    Population Structure, Diversity and Reproductive Mode of the Grape Phylloxera (Daktulosphaira vitifoliae) across Its Native Range.
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    PubMed     Abstract available


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    Epigenetic Alterations Affecting Transcription Factors and Signaling Pathways in Stromal Cells of Endometriosis.
    PLoS One. 2017;12:e0170859.
    PubMed     Abstract available


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    Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis.
    PLoS One. 2017;12:e0170712.
    PubMed     Abstract available


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    Diversity of Guilds of Amphibian Larvae in North-Western Africa.
    PLoS One. 2017;12:e0170763.
    PubMed     Abstract available


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    Complete Chloroplast Genomes of Erianthus arundinaceus and Miscanthus sinensis: Comparative Genomics and Evolution of the Saccharum Complex.
    PLoS One. 2017;12:e0169992.
    PubMed     Abstract available


  1021. CHEN Z, Li Z, Zhuang R, Yuan Y, et al
    Adaptive Estimation of Personalized Maximum Tolerated Dose in Cancer Phase I Clinical Trials Based on All Toxicities and Individual Genomic Profile.
    PLoS One. 2017;12:e0170187.
    PubMed     Abstract available


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    Metagenomic Analysis of Airborne Bacterial Community and Diversity in Seoul, Korea, during December 2014, Asian Dust Event.
    PLoS One. 2017;12:e0170693.
    PubMed     Abstract available


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    Seasonal Dynamics and Metagenomic Characterization of Marine Viruses in Goseong Bay, Korea.
    PLoS One. 2017;12:e0169841.
    PubMed     Abstract available


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    iTRAQ-Based Proteomics Reveals Novel Biomarkers for Idiopathic Pulmonary Fibrosis.
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    PubMed     Abstract available


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    A Comparative Study of Serum Exosome Isolation Using Differential Ultracentrifugation and Three Commercial Reagents.
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    Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.
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    PubMed     Abstract available


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    MixFit: Methodology for Computing Ancestry-Related Genetic Scores at the Individual Level and Its Application to the Estonian and Finnish Population Studies.
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    PubMed     Abstract available


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    Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.
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    Weak Genetic Structure in Northern African Dromedary Camels Reflects Their Unique Evolutionary History.
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    Biogeography in Cellana (Patellogastropoda, Nacellidae) with Special Emphasis on the Relationships of Southern Hemisphere Oceanic Island Species.
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    Biting Midges (Diptera: Ceratopogonidae) from Cambay Amber Indicate that the Eocene Fauna of the Indian Subcontinent Was Not Isolated.
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    Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection.
    PLoS One. 2017;12:e0169598.
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    Genetic Nature of Elemental Contents in Wheat Grains and Its Genomic Prediction: Toward the Effective Use of Wheat Landraces from Afghanistan.
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    Terrestrial Macrofungal Diversity from the Tropical Dry Evergreen Biome of Southern India and Its Potential Role in Aerobiology.
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    PubMed     Abstract available


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    p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.
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    The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae).
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    Molecular Evidence of Transmission of Influenza A/H1N1 2009 on a University Campus.
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    Frequency of chimerism in populations of the kelp Lessonia spicata in central Chile.
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    PLoS One. 2017;12:e0170762.
    PubMed     Abstract available


  1052. CHO YE, Im EJ, Moon PG, Mezey E, et al
    Increased liver-specific proteins in circulating extracellular vesicles as potential biomarkers for drug- and alcohol-induced liver injury.
    PLoS One. 2017;12:e0172463.
    PubMed     Abstract available


  1053. IJAZ UZ, Quince C, Hanske L, Loman N, et al
    The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
    PLoS One. 2017;12:e0172605.
    PubMed     Abstract available


  1054. LI S, Li D, Zhao X, Wang Y, et al
    A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken.
    PLoS One. 2017;12:e0172211.
    PubMed     Abstract available


  1055. QIN L, Liu X, Liu S, Liu Y, et al
    Differentially expressed proteins underlying childhood cortical dysplasia with epilepsy identified by iTRAQ proteomic profiling.
    PLoS One. 2017;12:e0172214.
    PubMed     Abstract available


  1056. DUAN X, Wang K, Su S, Tian R, et al
    De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae).
    PLoS One. 2017;12:e0172513.
    PubMed     Abstract available


  1057. LU X, Kang X, Liu Y, Cui Z, et al
    HIV-1 molecular epidemiology among newly diagnosed HIV-1 individuals in Hebei, a low HIV prevalence province in China.
    PLoS One. 2017;12:e0171481.
    PubMed     Abstract available


  1058. TAYABALI AF, Coleman G, Crosthwait J, Nguyen KC, et al
    Composition and pathogenic potential of a microbial bioremediation product used for crude oil degradation.
    PLoS One. 2017;12:e0171911.
    PubMed     Abstract available


  1059. LIMA DF, de Lima LI, Rocha JA, de Andrade IM, et al
    Seasonal change in main alkaloids of jaborandi (Pilocarpus microphyllus Stapf ex Wardleworth), an economically important species from the Brazilian flora.
    PLoS One. 2017;12:e0170281.
    PubMed     Abstract available


  1060. WAIHO K, Fazhan H, Shahreza MS, Moh JH, et al
    Transcriptome Analysis and Differential Gene Expression on the Testis of Orange Mud Crab, Scylla olivacea, during Sexual Maturation.
    PLoS One. 2017;12:e0171095.
    PubMed     Abstract available


  1061. ZHANG X, Mu Y, Mu P, Ao J, et al
    Transcriptome Analysis Reveals Comprehensive Insights into the Early Immune Response of Large Yellow Croaker (Larimichthys crocea) Induced by Trivalent Bacterial Vaccine.
    PLoS One. 2017;12:e0170958.
    PubMed     Abstract available


  1062. N'DIAYE A, Haile JK, Cory AT, Clarke FR, et al
    Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.
    PLoS One. 2017;12:e0170941.
    PubMed     Abstract available


  1063. ANGELONE-ALASAAD S, Biebach I, Perez JM, Soriguer RC, et al
    Molecular Analyses Reveal Unexpected Genetic Structure in Iberian Ibex Populations.
    PLoS One. 2017;12:e0170827.
    PubMed     Abstract available


  1064. SOLLANEK KJ, Burniston JG, Kavazis AN, Morton AB, et al
    Global Proteome Changes in the Rat Diaphragm Induced by Endurance Exercise Training.
    PLoS One. 2017;12:e0171007.
    PubMed     Abstract available


  1065. HUANG X, Zang X, Wu F, Jin Y, et al
    Transcriptome Sequencing of Gracilariopsis lemaneiformis to Analyze the Genes Related to Optically Active Phycoerythrin Synthesis.
    PLoS One. 2017;12:e0170855.
    PubMed     Abstract available


  1066. ZHANG D, Xia X, Wang X, Zhang P, et al
    PGRMC1 Is a Novel Potential Tumor Biomarker of Human Renal Cell Carcinoma Based on Quantitative Proteomic and Integrative Biological Assessments.
    PLoS One. 2017;12:e0170453.
    PubMed     Abstract available


  1067. PANTOJA-MELENDEZ CA, Miranda-Duarte A, Roque-Ramirez B, Zenteno JC, et al
    Epidemiological and Molecular Characterization of a Mexican Population Isolate with High Prevalence of Limb-Girdle Muscular Dystrophy Type 2A Due to a Novel Calpain-3 Mutation.
    PLoS One. 2017;12:e0170280.
    PubMed     Abstract available


  1068. RODRIGUES RT, Chizzotti ML, Vital CE, Baracat-Pereira MC, et al
    Differences in Beef Quality between Angus (Bos taurus taurus) and Nellore (Bos taurus indicus) Cattle through a Proteomic and Phosphoproteomic Approach.
    PLoS One. 2017;12:e0170294.
    PubMed     Abstract available


  1069. CHO IT, Lim Y, Golden JA, Cho G, et al
    Aristaless Related Homeobox (ARX) Interacts with beta-Catenin, BCL9, and P300 to Regulate Canonical Wnt Signaling.
    PLoS One. 2017;12:e0170282.
    PubMed     Abstract available


  1070. HJELMSO MH, Hellmer M, Fernandez-Cassi X, Timoneda N, et al
    Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing.
    PLoS One. 2017;12:e0170199.
    PubMed     Abstract available


  1071. HE C, Fu J, Zhang J, Li Y, et al
    A Gene-Oriented Haplotype Comparison Reveals Recently Selected Genomic Regions in Temperate and Tropical Maize Germplasm.
    PLoS One. 2017;12:e0169806.
    PubMed     Abstract available


  1072. VOLLMERS J, Wiegand S, Kaster AK
    Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!
    PLoS One. 2017;12:e0169662.
    PubMed     Abstract available


  1073. VESTY A, Biswas K, Taylor MW, Gear K, et al
    Evaluating the Impact of DNA Extraction Method on the Representation of Human Oral Bacterial and Fungal Communities.
    PLoS One. 2017;12:e0169877.
    PubMed     Abstract available


  1074. YANG Y, Lian S, Meng L, Qu L, et al
    Antibody Array Revealed PRL-3 Affects Protein Phosphorylation and Cytokine Secretion.
    PLoS One. 2017;12:e0169665.
    PubMed     Abstract available


  1075. GELIN P, Fauvelot C, Mehn V, Bureau S, et al
    Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type beta in Reunion Island, South Western Indian Ocean.
    PLoS One. 2017;12:e0169692.
    PubMed     Abstract available


  1076. GUARINO MP, Altomare A, Barera S, Locato V, et al
    Effect of Inulin on Proteome Changes Induced by Pathogenic Lipopolysaccharide in Human Colon.
    PLoS One. 2017;12:e0169481.
    PubMed     Abstract available


  1077. BIAZZI E, Nazzicari N, Pecetti L, Brummer EC, et al
    Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits.
    PLoS One. 2017;12:e0169234.
    PubMed     Abstract available


  1078. ORTIZ ME, Bleckwedel J, Fadda S, Picariello G, et al
    Global Analysis of Mannitol 2-Dehydrogenase in Lactobacillus reuteri CRL 1101 during Mannitol Production through Enzymatic, Genetic and Proteomic Approaches.
    PLoS One. 2017;12:e0169441.
    PubMed     Abstract available


  1079. HAN Z, Kautto L, Nevalainen H
    Secretion of Proteases by an Opportunistic Fungal Pathogen Scedosporium aurantiacum.
    PLoS One. 2017;12:e0169403.
    PubMed     Abstract available


  1080. HOFF ML, Fabrizius A, Czech-Damal NU, Folkow LP, et al
    Transcriptome Analysis Identifies Key Metabolic Changes in the Hooded Seal (Cystophora cristata) Brain in Response to Hypoxia and Reoxygenation.
    PLoS One. 2017;12:e0169366.
    PubMed     Abstract available


  1081. KUO HW, Shih CL, Tsung JH, Liu SW, et al
    Pharmacogenomics study on cadherin 2 network with regard to HIV infection and methadone treatment outcome.
    PLoS One. 2017;12:e0174647.
    PubMed     Abstract available


  1082. QIN Y, Djabou AS, An F, Li K, et al
    Proteomic analysis of injured storage roots in cassava (Manihot esculenta Crantz) under postharvest physiological deterioration.
    PLoS One. 2017;12:e0174238.
    PubMed     Abstract available


  1083. ARMERO A, Baudouin L, Bocs S, This D, et al
    Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.
    PLoS One. 2017;12:e0173300.
    PubMed     Abstract available


  1084. EIRIN A, Zhu XY, Puranik AS, Woollard JR, et al
    Integrated transcriptomic and proteomic analysis of the molecular cargo of extracellular vesicles derived from porcine adipose tissue-derived mesenchymal stem cells.
    PLoS One. 2017;12:e0174303.
    PubMed     Abstract available


  1085. HOLMILA R, Sklias A, Muller DC, Degli Esposti D, et al
    Targeted deep sequencing of plasma circulating cell-free DNA reveals Vimentin and Fibulin 1 as potential epigenetic biomarkers for hepatocellular carcinoma.
    PLoS One. 2017;12:e0174265.
    PubMed     Abstract available


  1086. LOWDON RF, Wang T
    Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancer.
    PLoS One. 2017;12:e0174032.
    PubMed     Abstract available


  1087. NAGA PRASAD SV, Gupta MK, Duan ZH, Surampudi VS, et al
    A unique microRNA profile in end-stage heart failure indicates alterations in specific cardiovascular signaling networks.
    PLoS One. 2017;12:e0170456.
    PubMed     Abstract available


  1088. GUAYASAMIN JM, Hutter CR, Tapia EE, Culebras J, et al
    Diversification of the rainfrog Pristimantis ornatissimus in the lowlands and Andean foothills of Ecuador.
    PLoS One. 2017;12:e0172615.
    PubMed     Abstract available


  1089. MCDOUGALL CA, Welsh AB, Gosselin T, Anderson WG, et al
    Rethinking the influence of hydroelectric development on gene flow in a long-lived fish, the Lake Sturgeon Acipenser fulvescens.
    PLoS One. 2017;12:e0174269.
    PubMed     Abstract available


  1090. GANTUZ M, Lorenzetti MA, Chabay PA, Preciado MV, et al
    A novel recombinant variant of latent membrane protein 1 from Epstein Barr virus in Argentina denotes phylogeographical association.
    PLoS One. 2017;12:e0174221.
    PubMed     Abstract available


  1091. QI H, Song K, Li C, Wang W, et al
    Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas).
    PLoS One. 2017;12:e0174007.
    PubMed     Abstract available


  1092. HATTHAKAROON C, Pharkjaksu S, Chongtrakool P, Suwannakarn K, et al
    Molecular epidemiology of cryptococcal genotype VNIc/ST5 in Siriraj Hospital, Thailand.
    PLoS One. 2017;12:e0173744.
    PubMed     Abstract available


  1093. CHI W, Gao Y, Hu Q, Guo W, et al
    Genome-wide analysis of brain and gonad transcripts reveals changes of key sex reversal-related genes expression and signaling pathways in three stages of Monopterus albus.
    PLoS One. 2017;12:e0173974.
    PubMed     Abstract available


  1094. CHEN PC, Shih CH, Chu TJ, Lee YC, et al
    Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia.
    PLoS One. 2017;12:e0173490.
    PubMed     Abstract available


  1095. HE S, Wang H, Liu R, He M, et al
    mRNA N6-methyladenosine methylation of postnatal liver development in pig.
    PLoS One. 2017;12:e0173421.
    PubMed     Abstract available


  1096. PFEIFFER W, Braun J, Burchell J, Witte CL, et al
    Whole-genome analysis of mycobacteria from birds at the San Diego Zoo.
    PLoS One. 2017;12:e0173464.
    PubMed     Abstract available


  1097. KANG Z, Zhang X, Ding S, Tang C, et al
    Transcriptomes of three species of Tipuloidea (Diptera, Tipulomorpha) and implications for phylogeny of Tipulomorpha.
    PLoS One. 2017;12:e0173207.
    PubMed     Abstract available


  1098. ZHOU T, Souzeau E, Sharma S, Landers J, et al
    Whole exome sequencing implicates eye development, the unfolded protein response and plasma membrane homeostasis in primary open-angle glaucoma.
    PLoS One. 2017;12:e0172427.
    PubMed     Abstract available


  1099. POLLEGIONI P, Woeste K, Chiocchini F, Del Lungo S, et al
    Rethinking the history of common walnut (Juglans regia L.) in Europe: Its origins and human interactions.
    PLoS One. 2017;12:e0172541.
    PubMed     Abstract available


  1100. ELDRIDGE MD, Miller EJ, Neaves LE, Zenger KR, et al
    Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii).
    PLoS One. 2017;12:e0172777.
    PubMed     Abstract available


  1101. LI R, Chen D, Wang T, Wan Y, et al
    High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba).
    PLoS One. 2017;12:e0172883.
    PubMed     Abstract available


  1102. MUNOZ S, Guerrero FD, Kellogg A, Heekin AM, et al
    Bioinformatic prediction of G protein-coupled receptor encoding sequences from the transcriptome of the foreleg, including the Haller's organ, of the cattle tick, Rhipicephalus australis.
    PLoS One. 2017;12:e0172326.
    PubMed     Abstract available


  1103. RUDQVIST N, Spetz J, Schuler E, Parris TZ, et al
    Transcriptional response to 131I exposure of rat thyroid gland.
    PLoS One. 2017;12:e0171797.
    PubMed     Abstract available


  1104. ZHU C, Pan Z, Wang H, Chang G, et al
    De novo assembly, characterization and annotation for the transcriptome of Sarcocheilichthys sinensis.
    PLoS One. 2017;12:e0171966.
    PubMed     Abstract available


  1105. RIZWAN M, Aslam M, Asghar MJ, Abbas G, et al
    Pre-breeding of lentil (Lens culinaris Medik.) for herbicide resistance through seed mutagenesis.
    PLoS One. 2017;12:e0171846.
    PubMed     Abstract available


  1106. WU B, Hu Y, Huo P, Zhang Q, et al
    Transcriptome analysis of hexaploid hulless oat in response to salinity stress.
    PLoS One. 2017;12:e0171451.
    PubMed     Abstract available


  1107. ZYCH K, Snoek BL, Elvin M, Rodriguez M, et al
    reGenotyper: Detecting mislabeled samples in genetic data.
    PLoS One. 2017;12:e0171324.
    PubMed     Abstract available


  1108. BACKMAN TW, Evans DS, Girke T
    Large-scale bioactivity analysis of the small-molecule assayed proteome.
    PLoS One. 2017;12:e0171413.
    PubMed     Abstract available


  1109. MASSAFRA V, Milona A, Vos HR, Burgering BM, et al
    Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation.
    PLoS One. 2017;12:e0171185.
    PubMed     Abstract available


  1110. OMIDVAR V, Mohorianu I, Dalmay T, Zheng Y, et al
    Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant.
    PLoS One. 2017;12:e0170715.
    PubMed     Abstract available


  1111. BAI S, Chen H, Zhu L, Liu W, et al
    Comparative study on the in vitro effects of Pseudomonas aeruginosa and seaweed alginates on human gut microbiota.
    PLoS One. 2017;12:e0171576.
    PubMed     Abstract available


  1112. YANG MQ, Li DZ, Wen J, Yi TS, et al
    Phylogeny and biogeography of the amphi-Pacific genus Aphananthe.
    PLoS One. 2017;12:e0171405.
    PubMed     Abstract available


  1113. POLANSKI A, Szczesna A, Garbulowski M, Kimmel M, et al
    Coalescence computations for large samples drawn from populations of time-varying sizes.
    PLoS One. 2017;12:e0170701.
    PubMed     Abstract available


  1114. COX MJ, Turek EM, Hennessy C, Mirza GK, et al
    Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients.
    PLoS One. 2017;12:e0170622.
    PubMed     Abstract available


  1115. VON SALTZWEDEL H, Scheu S, Schaefer I
    Genetic structure and distribution of Parisotoma notabilis (Collembola) in Europe: Cryptic diversity, split of lineages and colonization patterns.
    PLoS One. 2017;12:e0170909.
    PubMed     Abstract available


  1116. REYNAUD Y, Zheng C, Wu G, Sun Q, et al
    Bayesian population structure analysis reveals presence of phylogeographically specific sublineages within previously ill-defined T group of Mycobacterium tuberculosis.
    PLoS One. 2017;12:e0171584.
    PubMed     Abstract available


  1117. HUANG N, Wang W, Yao Y, Zhu F, et al
    The influence of different concentrations of bio-organic fertilizer on cucumber Fusarium wilt and soil microflora alterations.
    PLoS One. 2017;12:e0171490.
    PubMed     Abstract available


  1118. ZOU Z, Liu J, Yang L, Xie G, et al
    Survey of the rubber tree genome reveals a high number of cysteine protease-encoding genes homologous to Arabidopsis SAG12.
    PLoS One. 2017;12:e0171725.
    PubMed     Abstract available


  1119. VAN GOOR A, Ashwell CM, Persia ME, Rothschild MF, et al
    Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat.
    PLoS One. 2017;12:e0171414.
    PubMed     Abstract available


  1120. ZUO LH, Shang AQ, Zhang S, Yu XY, et al
    The first complete chloroplast genome sequences of Ulmus species by de novo sequencing: Genome comparative and taxonomic position analysis.
    PLoS One. 2017;12:e0171264.
    PubMed     Abstract available


  1121. LEE MY, Park C, Ha SE, Park PJ, et al
    Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels.
    PLoS One. 2017;12:e0171262.
    PubMed     Abstract available


  1122. MARTINS CO, Demarchi L, Ferreira FM, Pomerantzeff PM, et al
    Rheumatic Heart Disease and Myxomatous Degeneration: Differences and Similarities of Valve Damage Resulting from Autoimmune Reactions and Matrix Disorganization.
    PLoS One. 2017;12:e0170191.
    PubMed     Abstract available


  1123. VILA M, Hermida M, Fernandez C, Perea S, et al
    Phylogeography and Conservation Genetics of the Ibero-Balearic Three-Spined Stickleback (Gasterosteus aculeatus).
    PLoS One. 2017;12:e0170685.
    PubMed     Abstract available


  1124. EBERHARDT C, Thillai M, Parker R, Siddiqui N, et al
    Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis.
    PLoS One. 2017;12:e0170285.
    PubMed     Abstract available


  1125. WANG H, Zhao S, Gao Y, Yang J, et al
    Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa).
    PLoS One. 2017;12:e0170210.
    PubMed     Abstract available


  1126. FRAIJA-FERNANDEZ N, Fernandez M, Lehnert K, Raga JA, et al
    Long-Distance Travellers: Phylogeography of a Generalist Parasite, Pholeter gastrophilus, from Cetaceans.
    PLoS One. 2017;12:e0170184.
    PubMed     Abstract available


  1127. WOO HJ, Yu C, Reifman J
    Collective Genetic Interaction Effects and the Role of Antigen-Presenting Cells in Autoimmune Diseases.
    PLoS One. 2017;12:e0169918.
    PubMed     Abstract available


  1128. GRANT LR, O'Brien KL, Weatherholtz RC, Reid R, et al
    Norovirus and Sapovirus Epidemiology and Strain Characteristics among Navajo and Apache Infants.
    PLoS One. 2017;12:e0169491.
    PubMed     Abstract available


  1129. XI Y, Jiao W, Cao J, Jiang W, et al
    Effects of chlorogenic acid on capacity of free radicals scavenging and proteomic changes in postharvest fruit of nectarine.
    PLoS One. 2017;12:e0182494.
    PubMed     Abstract available


  1130. KUMAR S, Subbarao BL, Kumari R, Hallan V, et al
    Molecular characterization of a novel cryptic virus infecting pigeonpea plants.
    PLoS One. 2017;12:e0181829.
    PubMed     Abstract available


  1131. ANEL-LOPEZ L, Ortega-Ferrusola C, Martinez-Rodriguez C, Alvarez M, et al
    Analysis of seminal plasma from brown bear (Ursus arctos) during the breeding season: Its relationship with testosterone levels.
    PLoS One. 2017;12:e0181776.
    PubMed     Abstract available


  1132. DHARMAYANTHI AB, Terai Y, Sulandari S, Zein MS, et al
    The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.
    PLoS One. 2017;12:e0173147.
    PubMed     Abstract available


  1133. LLUVERAS-TENORIO A, Vinciguerra R, Galano E, Blaensdorf C, et al
    GC/MS and proteomics to unravel the painting history of the lost Giant Buddhas of Bamiyan (Afghanistan).
    PLoS One. 2017;12:e0172990.
    PubMed     Abstract available


  1134. RUTKOWSKI R, Zawadzka D, Suchecka E, Merta D, et al
    Conservation genetics of the capercaillie in Poland - Delineation of conservation units.
    PLoS One. 2017;12:e0174901.
    PubMed     Abstract available


  1135. EDWARDS RD, Crisp MD, Cook DH, Cook LG, et al
    Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics.
    PLoS One. 2017;12:e0174812.
    PubMed     Abstract available


  1136. SUN Y, Guo W, Wang F, Zhan C, et al
    Transcriptome analysis of Corynebacterium glutamicum in the process of recombinant protein expression in bioreactors.
    PLoS One. 2017;12:e0174824.
    PubMed     Abstract available


  1137. GUINOISEAU T, Moreau A, Hohnadel G, Ngo-Giang-Huong N, et al
    Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.
    PLoS One. 2017;12:e0174852.
    PubMed     Abstract available


  1138. PELLON A, Ramirez-Garcia A, Buldain I, Antoran A, et al
    Molecular and cellular responses of the pathogenic fungus Lomentospora prolificans to the antifungal drug voriconazole.
    PLoS One. 2017;12:e0174885.
    PubMed     Abstract available


  1139. LI Y, Urban A, Midura D, Simon HG, et al
    Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-kappaB in epicardial EMT.
    PLoS One. 2017;12:e0174563.
    PubMed     Abstract available


  1140. LI Y, Morrow J, Raby B, Tantisira K, et al
    Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data.
    PLoS One. 2017;12:e0174602.
    PubMed     Abstract available


  1141. DECAP D, Reumers J, Herzeel C, Costanza P, et al
    Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.
    PLoS One. 2017;12:e0174575.
    PubMed     Abstract available


  1142. MEINERT C, Brandt U, Heine V, Beyert J, et al
    Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.
    PLoS One. 2017;12:e0174256.
    PubMed     Abstract available


  1143. ARNAU G, Bhattacharjee R, Mn S, Chair H, et al
    Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.
    PLoS One. 2017;12:e0174150.
    PubMed     Abstract available


  1144. WARD LJ, Ljunggren SA, Karlsson H, Li W, et al
    Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages.
    PLoS One. 2017;12:e0174475.
    PubMed     Abstract available


  1145. ZOU B, Li J, Zhou Q, Quan ZX, et al
    MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
    PLoS One. 2017;12:e0174609.
    PubMed     Abstract available


  1146. MARROTTE RR, Bowman J
    The relationship between least-cost and resistance distance.
    PLoS One. 2017;12:e0174212.
    PubMed     Abstract available


  1147. BYRUM SD, Burdine MS, Orr L, Mackintosh SG, et al
    Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection.
    PLoS One. 2017;12:e0174771.
    PubMed     Abstract available


  1148. WOOD LE, De Grave S, Daniels SR
    Phylogeographic patterning among two codistributed shrimp species (Crustacea: Decapoda: Palaemonidae) reveals high levels of connectivity across biogeographic regions along the South African coast.
    PLoS One. 2017;12:e0173356.
    PubMed     Abstract available


  1149. PAGES-MONTEIRO L, Marti R, Commun C, Alliot N, et al
    Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa.
    PLoS One. 2017;12:e0173022.
    PubMed     Abstract available


  1150. REZNICK DN, Furness AI, Meredith RW, Springer MS, et al
    The origin and biogeographic diversification of fishes in the family Poeciliidae.
    PLoS One. 2017;12:e0172546.
    PubMed     Abstract available


  1151. WANG Z, Fan G, Dong Y, Zhai X, et al
    Implications of polyploidy events on the phenotype, microstructure, and proteome of Paulownia australis.
    PLoS One. 2017;12:e0172633.
    PubMed     Abstract available


  1152. CHENG J, Romantsov T, Engel K, Doxey AC, et al
    Functional metagenomics reveals novel beta-galactosidases not predictable from gene sequences.
    PLoS One. 2017;12:e0172545.
    PubMed     Abstract available


  1153. PERUMAL N, Manicam C, Steinicke M, Funke S, et al
    Characterization of the human aqueous humour proteome: A comparison of the genders.
    PLoS One. 2017;12:e0172481.
    PubMed     Abstract available


  1154. HTUN NM, Magliano DJ, Zhang ZY, Lyons J, et al
    Prediction of acute coronary syndromes by urinary proteome analysis.
    PLoS One. 2017;12:e0172036.
    PubMed     Abstract available


  1155. GEBHARDT MJ, Jacobson RK, Shuman HA
    Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria.
    PLoS One. 2017;12:e0173116.
    PubMed     Abstract available


  1156. NAKAOKA T, Iga M, Yamada T, Koujima I, et al
    Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.
    PLoS One. 2017;12:e0172951.
    PubMed     Abstract available


  1157. BATISTA ME, Silva DD, Sales MA, Sa AA, et al
    New data on the stem and leaf anatomy of two conifers from the Lower Cretaceous of the Araripe Basin, northeastern Brazil, and their taxonomic and paleoecological implications.
    PLoS One. 2017;12:e0173090.
    PubMed     Abstract available


  1158. BRYANT AE, Aldape MJ, Bayer CR, Katahira EJ, et al
    Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.
    PLoS One. 2017;12:e0172486.
    PubMed     Abstract available


  1159. BENEVENUTO RF, Agapito-Tenfen SZ, Vilperte V, Wikmark OG, et al
    Molecular responses of genetically modified maize to abiotic stresses as determined through proteomic and metabolomic analyses.
    PLoS One. 2017;12:e0173069.
    PubMed     Abstract available


  1160. PRICE A, Garhyan J, Gibas C
    The impact of RNA secondary structure on read start locations on the Illumina sequencing platform.
    PLoS One. 2017;12:e0173023.
    PubMed     Abstract available


  1161. FOSCHI C, Laghi L, Parolin C, Giordani B, et al
    Novel approaches for the taxonomic and metabolic characterization of lactobacilli: Integration of 16S rRNA gene sequencing with MALDI-TOF MS and 1H-NMR.
    PLoS One. 2017;12:e0172483.
    PubMed     Abstract available


  1162. VARGAS-CARO C, Bustamante C, Bennett MB, Ovenden JR, et al
    Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean.
    PLoS One. 2017;12:e0172255.
    PubMed     Abstract available


  1163. SERGEANT K, Printz B, Gutsch A, Behr M, et al
    Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases.
    PLoS One. 2017;12:e0171990.
    PubMed     Abstract available


  1164. WANG R, Cui Y, Xu Y, Irudayaraj J, et al
    Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-beta-carboline (TaClo) in vitro.
    PLoS One. 2017;12:e0172243.
    PubMed     Abstract available


  1165. KAMFWA K, Zhao D, Kelly JD, Cichy KA, et al
    Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation.
    PLoS One. 2017;12:e0172141.
    PubMed     Abstract available


  1166. PARK YJ, Koh J, Kwon JT, Park YS, et al
    Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes.
    PLoS One. 2017;12:e0169677.
    PubMed     Abstract available


  1167. SAKAKI M, Ebihara Y, Okamura K, Nakabayashi K, et al
    Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses.
    PLoS One. 2017;12:e0171431.
    PubMed     Abstract available


  1168. LI YH, Wang HP, Yao H, O'Bryant P, et al
    De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens.
    PLoS One. 2017;12:e0171187.
    PubMed     Abstract available


  1169. HAMILTON SL, Logan CA, Fennie HW, Sogard SM, et al
    Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics.
    PLoS One. 2017;12:e0169670.
    PubMed     Abstract available


  1170. ZACHER B, Michel M, Schwalb B, Cramer P, et al
    Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
    PLoS One. 2017;12:e0169249.
    PubMed     Abstract available


  1171. BEISSER D, Kaschani F, Graupner N, Grossmann L, et al
    Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
    PLoS One. 2017;12:e0168183.
    PubMed     Abstract available


  1172. NANDAKUMAR P, Tin A, Grove ML, Ma J, et al
    MicroRNAs in the miR-17 and miR-15 families are downregulated in chronic kidney disease with hypertension.
    PLoS One. 2017;12:e0176734.
    PubMed     Abstract available


  1173. CLARKE B, Mahapatra M, Friedgut O, Bumbarov V, et al
    Persistence of Lineage IV Peste-des-petits ruminants virus within Israel since 1993: An evolutionary perspective.
    PLoS One. 2017;12:e0177028.
    PubMed     Abstract available


  1174. SONG J, Hu Y, Li J, Zheng H, et al
    Different microRNA profiles reveal the diverse outcomes induced by EV71 and CA16 infection in human umbilical vein endothelial cells using high-throughput sequencing.
    PLoS One. 2017;12:e0177657.
    PubMed     Abstract available


  1175. MORALES-CORREA E CASTRO AC, Barbosa NCCP
    Recent evolutionary history of Chrysoperla externa (Hagen 1861) (Neuroptera: Chrysopidae) in Brazil.
    PLoS One. 2017;12:e0177414.
    PubMed     Abstract available


  1176. CARRERAS-PLANELLA L, Soler-Majoral J, Rubio-Esteve C, Lozano-Ramos SI, et al
    Characterization and proteomic profile of extracellular vesicles from peritoneal dialysis efflux.
    PLoS One. 2017;12:e0176987.
    PubMed     Abstract available


  1177. KARAH N, Jolley KA, Hall RM, Uhlin BE, et al
    Database for the ampC alleles in Acinetobacter baumannii.
    PLoS One. 2017;12:e0176695.
    PubMed     Abstract available


  1178. ZHU Y, Zhou G, Yu X, Xu Q, et al
    LC-MS-MS quantitative analysis reveals the association between FTO and DNA methylation.
    PLoS One. 2017;12:e0175849.
    PubMed     Abstract available


  1179. RODRIGUES J, Viegas W, Silva M
    45S rDNA external transcribed spacer organization reveals new phylogenetic relationships in Avena genus.
    PLoS One. 2017;12:e0176170.
    PubMed     Abstract available


  1180. WANG J, Pei L, Jin Z, Zhang K, et al
    Overexpression of the protein phosphatase 2A regulatory subunit a gene ZmPP2AA1 improves low phosphate tolerance by remodeling the root system architecture of maize.
    PLoS One. 2017;12:e0176538.
    PubMed     Abstract available


  1181. YARYGIN K, Tyakht A, Larin A, Kostryukova E, et al
    Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses.
    PLoS One. 2017;12:e0176154.
    PubMed     Abstract available


  1182. RAYMOND CK, Hernandez J, Karr R, Hill K, et al
    Collection of cell-free DNA for genomic analysis of solid tumors in a clinical laboratory setting.
    PLoS One. 2017;12:e0176241.
    PubMed     Abstract available


  1183. RUEDA-ZARATE HA, Imaz-Rosshandler I, Cardenas-Ovando RA, Castillo-Fernandez JE, et al
    A computational toxicogenomics approach identifies a list of highly hepatotoxic compounds from a large microarray database.
    PLoS One. 2017;12:e0176284.
    PubMed     Abstract available


  1184. NAOUR S, Espinoza BM, Aedo JE, Zuloaga R, et al
    Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis.
    PLoS One. 2017;12:e0176447.
    PubMed     Abstract available


  1185. BARUAH IK, Panda D, M V J, Das DJ, et al
    Bruchid egg induced transcript dynamics in developing seeds of black gram (Vigna mungo).
    PLoS One. 2017;12:e0176337.
    PubMed     Abstract available


  1186. ROOMP K, Kristinsson H, Schvartz D, Ubhayasekera K, et al
    Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism.
    PLoS One. 2017;12:e0176391.
    PubMed     Abstract available


  1187. FUKUDA T, Nomura M, Kato Y, Tojo H, et al
    A selected reaction monitoring mass spectrometric assessment of biomarker candidates diagnosing large-cell neuroendocrine lung carcinoma by the scaling method using endogenous references.
    PLoS One. 2017;12:e0176219.
    PubMed     Abstract available


  1188. NORONHA FERNANDES-BRUM C, Marinho Rezende P, Cherubino Ribeiro TH, Ricon de Oliveira R, et al
    A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms.
    PLoS One. 2017;12:e0176333.
    PubMed     Abstract available


  1189. JEONG C, Peter BM, Basnyat B, Neupane M, et al
    A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau.
    PLoS One. 2017;12:e0175885.
    PubMed     Abstract available


  1190. VIANA MVC, Figueiredo H, Ramos R, Guimaraes LC, et al
    Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.
    PLoS One. 2017;12:e0176347.
    PubMed     Abstract available


  1191. ONUKI R, Yamaguchi R, Shibuya T, Kanehisa M, et al
    Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks.
    PLoS One. 2017;12:e0176530.
    PubMed     Abstract available


  1192. WELINDER C, Pawlowski K, Szasz AM, Yakovleva M, et al
    Correlation of histopathologic characteristics to protein expression and function in malignant melanoma.
    PLoS One. 2017;12:e0176167.
    PubMed     Abstract available


  1193. SINGH SK, Aspi J, Kvist L, Sharma R, et al
    Fine-scale population genetic structure of the Bengal tiger (Panthera tigris tigris) in a human-dominated western Terai Arc Landscape, India.
    PLoS One. 2017;12:e0174371.
    PubMed     Abstract available


  1194. SALEHE BR, Jones CI, Di Fatta G, McGuffin LJ, et al
    RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses.
    PLoS One. 2017;12:e0175957.
    PubMed     Abstract available


  1195. NAVARRO G, Martinez-Pinilla E, Sanchez-Melgar A, Ortiz R, et al
    A genomics approach identifies selective effects of trans-resveratrol in cerebral cortex neuron and glia gene expression.
    PLoS One. 2017;12:e0176067.
    PubMed     Abstract available


  1196. OH J, Lee S, Lee H, Cho JY, et al
    The novel carboxylesterase 1 variant c.662A>G may decrease the bioactivation of oseltamivir in humans.
    PLoS One. 2017;12:e0176320.
    PubMed     Abstract available


  1197. FRANCOIS L, Wijnrocx K, Colinet FG, Gengler N, et al
    Genomics of a revived breed: Case study of the Belgian campine cattle.
    PLoS One. 2017;12:e0175916.
    PubMed     Abstract available


  1198. LI YZ, Fan XW, Chen Q, Zhong H, et al
    A photoperiod-responsive protein compendium and conceptual proteome roadmap outline in maize grown in growth chambers with controlled conditions.
    PLoS One. 2017;12:e0174003.
    PubMed     Abstract available


  1199. LV J, Zhang L, Liu P, Li J, et al
    Transcriptomic variation of eyestalk reveals the genes and biological processes associated with molting in Portunus trituberculatus.
    PLoS One. 2017;12:e0175315.
    PubMed     Abstract available


  1200. MURPHY SN, Avillach P, Bellazzi R, Phillips L, et al
    Combining clinical and genomics queries using i2b2 - Three methods.
    PLoS One. 2017;12:e0172187.
    PubMed     Abstract available


  1201. MARITZ JM, Sullivan SA, Prill RJ, Aksoy E, et al
    Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.
    PLoS One. 2017;12:e0175527.
    PubMed     Abstract available


  1202. RIBEIRO MM, Piotti A, Ricardo A, Gaspar D, et al
    Genetic diversity and divergence at the Arbutus unedo L. (Ericaceae) westernmost distribution limit.
    PLoS One. 2017;12:e0175239.
    PubMed     Abstract available


  1203. LUDINGTON WB, Seher TD, Applegate O, Li X, et al
    Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater.
    PLoS One. 2017;12:e0174930.
    PubMed     Abstract available


  1204. WEI LH, Yan S, Teo YY, Huang YZ, et al
    Phylogeography of Y-chromosome haplogroup O3a2b2-N6 reveals patrilineal traces of Austronesian populations on the eastern coastal regions of Asia.
    PLoS One. 2017;12:e0175080.
    PubMed     Abstract available


  1205. ZHANG LJ, Cai WZ, Luo JY, Zhang S, et al
    Phylogeographic patterns of Lygus pratensis (Hemiptera: Miridae): Evidence for weak genetic structure and recent expansion in northwest China.
    PLoS One. 2017;12:e0174712.
    PubMed     Abstract available


  1206. NICHOLAS A, Kim YK, Lee WK, Selasi GN, et al
    Molecular epidemiology and antimicrobial susceptibility of Clostridium difficile isolates from two Korean hospitals.
    PLoS One. 2017;12:e0174716.
    PubMed     Abstract available


  1207. WAN X, Zhao X, Yau SS
    An information-based network approach for protein classification.
    PLoS One. 2017;12:e0174386.
    PubMed     Abstract available


  1208. SONG YN, Dong S, Wei B, Liu P, et al
    Metabolomic mechanisms of gypenoside against liver fibrosis in rats: An integrative analysis of proteomics and metabolomics data.
    PLoS One. 2017;12:e0173598.
    PubMed     Abstract available


  1209. FUKAGAWA T, Takafuji K, Tachibanaki S, Kawamura S, et al
    Purification of cone outer segment for proteomic analysis on its membrane proteins in carp retina.
    PLoS One. 2017;12:e0173908.
    PubMed     Abstract available


  1210. CELIS JS, Edgell DR, Stelbrink B, Wibberg D, et al
    Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
    PLoS One. 2017;12:e0173734.
    PubMed     Abstract available


  1211. LIU T, Luo C, Wang J, Ma J, et al
    Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens.
    PLoS One. 2017;12:e0173620.
    PubMed     Abstract available


  1212. GUERRERO-JIMENEZ CJ, Pena F, Morales P, Mendez M, et al
    Pattern of genetic differentiation of an incipient speciation process: The case of the high Andean killifish Orestias.
    PLoS One. 2017;12:e0170380.
    PubMed     Abstract available


  1213. CHRISTENSEN KA, Davidson WS
    Autopolyploidy genome duplication preserves other ancient genome duplications in Atlantic salmon (Salmo salar).
    PLoS One. 2017;12:e0173053.
    PubMed     Abstract available


  1214. MATSUDA F, Kinoshita S, Nishino S, Tomita A, et al
    Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism.
    PLoS One. 2017;12:e0172742.
    PubMed     Abstract available


  1215. LI J, Yang B, Shi M, Yuan K, et al
    Effects upon metabolic pathways and energy production by Sb(III) and As(III)/Sb(III)-oxidase gene aioA in Agrobacterium tumefaciens GW4.
    PLoS One. 2017;12:e0172823.
    PubMed     Abstract available


  1216. HAFT DR, Haft DH
    A comprehensive software suite for protein family construction and functional site prediction.
    PLoS One. 2017;12:e0171758.
    PubMed     Abstract available


  1217. MICALLEF G, Cash P, Fernandes JM, Rajan B, et al
    Dietary Yeast Cell Wall Extract Alters the Proteome of the Skin Mucous Barrier in Atlantic Salmon (Salmo salar): Increased Abundance and Expression of a Calreticulin-Like Protein.
    PLoS One. 2017;12:e0169075.
    PubMed     Abstract available


  1218. ELMI AA, Bansal D, Acharya A, Skariah S, et al
    Human Papillomavirus (HPV) Infection: Molecular Epidemiology, Genotyping, Seroprevalence and Associated Risk Factors among Arab Women in Qatar.
    PLoS One. 2017;12:e0169197.
    PubMed     Abstract available


  1219. JAMANN TM, Sood S, Wisser RJ, Holland JB, et al
    High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time.
    PLoS One. 2017;12:e0168910.
    PubMed     Abstract available


  1220. BOUCHEHAM A, Sommard V, Zehraoui F, Boualem A, et al
    IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data.
    PLoS One. 2017;12:e0179787.
    PubMed     Abstract available


  1221. PINSONNEAULT JK, Frater JT, Kompa B, Mascarenhas R, et al
    Intronic SNP in ESR1 encoding human estrogen receptor alpha is associated with brain ESR1 mRNA isoform expression and behavioral traits.
    PLoS One. 2017;12:e0179020.
    PubMed     Abstract available


  1222. MOHR T, Haudek-Prinz V, Slany A, Grillari J, et al
    Proteome profiling in IL-1beta and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis.
    PLoS One. 2017;12:e0179065.
    PubMed     Abstract available


  1223. PARK KH, Greenwood-Quaintance KE, Uhl JR, Cunningham SA, et al
    Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.
    PLoS One. 2017;12:e0179003.
    PubMed     Abstract available


  1224. SINGH V, Singh B, Joshi R, Jaju P, et al
    Changes in the leaf proteome profile of Withania somnifera (L.) Dunal in response to Alternaria alternata infection.
    PLoS One. 2017;12:e0178924.
    PubMed     Abstract available


  1225. ZHOU DX, Zhao Y, Baker JA, Gu Q, et al
    The effect of alcohol on the differential expression of cluster of differentiation 14 gene, associated pathways, and genetic network.
    PLoS One. 2017;12:e0178689.
    PubMed     Abstract available


  1226. CSOSZ E, Labiscsak P, Kallo G, Markus B, et al
    Proteomics investigation of OSCC-specific salivary biomarkers in a Hungarian population highlights the importance of identification of population-tailored biomarkers.
    PLoS One. 2017;12:e0177282.
    PubMed     Abstract available


  1227. UGARTE TORRES A, Chu A, Read R, MacDonald J, et al
    The epidemiology of Staphylococcus aureus carriage in patients attending inner city sexually transmitted infections and community clinics in Calgary, Canada.
    PLoS One. 2017;12:e0178557.
    PubMed     Abstract available


  1228. GUPTA S, Bhar A, Chatterjee M, Ghosh A, et al
    Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack.
    PLoS One. 2017;12:e0178164.
    PubMed     Abstract available


  1229. TEIXEIRA ADD, Games PD, Katz BB, Tomich JM, et al
    Proteomic analysis in the Dufour's gland of Africanized Apis mellifera workers (Hymenoptera: Apidae).
    PLoS One. 2017;12:e0177415.
    PubMed     Abstract available


  1230. CAMERON SJS, Lewis KE, Huws SA, Hegarty MJ, et al
    A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.
    PLoS One. 2017;12:e0177062.
    PubMed     Abstract available


  1231. WANG X, Shojaie A, Zhang Y, Shelley D, et al
    Exploratory plasma proteomic analysis in a randomized crossover trial of aspirin among healthy men and women.
    PLoS One. 2017;12:e0178444.
    PubMed     Abstract available


  1232. YAMAZAKI T, Hatano Y, Handa T, Kato S, et al
    Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.
    PLoS One. 2017;12:e0177764.
    PubMed     Abstract available


  1233. EVERS C, Fischer C, Dikow N, Schott S, et al
    Familial breast cancer: Genetic counseling over time, including patients expectations and initiators considering the Angelina Jolie effect.
    PLoS One. 2017;12:e0177893.
    PubMed     Abstract available


  1234. XIAO W, Chen P, Xiao J, Wang, et al
    Comparative transcriptome profiling of a thermal resistant vs. sensitive silkworm strain in response to high temperature under stressful humidity condition.
    PLoS One. 2017;12:e0177641.
    PubMed     Abstract available


  1235. HAKIMI O, Ternette N, Murphy R, Kessler BM, et al
    A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue.
    PLoS One. 2017;12:e0177656.
    PubMed     Abstract available


  1236. WILLEMS H, Jacobs A, Hadiwikarta WW, Venken T, et al
    Thermodynamic framework to assess low abundance DNA mutation detection by hybridization.
    PLoS One. 2017;12:e0177384.
    PubMed     Abstract available


  1237. BOHME M, Spassov N, Ebner M, Geraads D, et al
    Messinian age and savannah environment of the possible hominin Graecopithecus from Europe.
    PLoS One. 2017;12:e0177347.
    PubMed     Abstract available


  1238. CHEN YC, Chen KD, Su MC, Chin CH, et al
    Genome-wide gene expression array identifies novel genes related to disease severity and excessive daytime sleepiness in patients with obstructive sleep apnea.
    PLoS One. 2017;12:e0176575.
    PubMed     Abstract available


  1239. PAVA Z, Noviyanti R, Handayuni I, Trimarsanto H, et al
    Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections.
    PLoS One. 2017;12:e0177445.
    PubMed     Abstract available


  1240. RAVIV B, Granot G, Chalifa-Caspi V, Grafi G, et al
    The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.
    PLoS One. 2017;12:e0177537.
    PubMed     Abstract available


  1241. ZHENG Y, Xu S, Liu J, Zhao Y, et al
    Genetic diversity and population structure of Chinese natural bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers.
    PLoS One. 2017;12:e0177508.
    PubMed     Abstract available


  1242. DIEZ BENAVENTE E, Ward Z, Chan W, Mohareb FR, et al
    Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure.
    PLoS One. 2017;12:e0177134.
    PubMed     Abstract available


  1243. KHOMTCHOUK BB, Hennessy JR, Wahlestedt C
    shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.
    PLoS One. 2017;12:e0176334.
    PubMed     Abstract available


  1244. PASCUAL M, Rives B, Schunter C, Macpherson E, et al
    Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea.
    PLoS One. 2017;12:e0176419.
    PubMed     Abstract available


  1245. MONTANA L, Caniglia R, Galaverni M, Fabbri E, et al
    Combining phylogenetic and demographic inferences to assess the origin of the genetic diversity in an isolated wolf population.
    PLoS One. 2017;12:e0176560.
    PubMed     Abstract available


  1246. YU H, Zhang Y, Wang Z, Liu L, et al
    Diverse range dynamics and dispersal routes of plants on the Tibetan Plateau during the late Quaternary.
    PLoS One. 2017;12:e0177101.
    PubMed     Abstract available


  1247. ZHOU Y, Wang S, Zhu H, Li P, et al
    Phylogeny and biogeography of South Chinese brown frogs (Ranidae, Anura).
    PLoS One. 2017;12:e0175113.
    PubMed     Abstract available


  1248. IBANEZ MI, Cabello P, Luque-Almagro VM, Saez LP, et al
    Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).
    PLoS One. 2017;12:e0172908.
    PubMed     Abstract available


  1249. TRIVEDI MS, Holger D, Bui AT, Craddock TJA, et al
    Short-term sleep deprivation leads to decreased systemic redox metabolites and altered epigenetic status.
    PLoS One. 2017;12:e0181978.
    PubMed     Abstract available


  1250. MURPHY SM, Augustine BC, Ulrey WA, Guthrie JM, et al
    Consequences of severe habitat fragmentation on density, genetics, and spatial capture-recapture analysis of a small bear population.
    PLoS One. 2017;12:e0181849.
    PubMed     Abstract available


  1251. TSAI FJ, Chen SY, Liu YC, Liao HY, et al
    The comparison of CHCA solvent compositions for improving LC-MALDI performance and its application to study the impact of aflatoxin B1 on the liver proteome of diabetes mellitus type 1 mice.
    PLoS One. 2017;12:e0181423.
    PubMed     Abstract available


  1252. EREZ O, Romero R, Maymon E, Chaemsaithong P, et al
    The prediction of late-onset preeclampsia: Results from a longitudinal proteomics study.
    PLoS One. 2017;12:e0181468.
    PubMed     Abstract available


  1253. VOLDOIRE E, Brunet F, Naville M, Volff JN, et al
    Expansion by whole genome duplication and evolution of the sox gene family in teleost fish.
    PLoS One. 2017;12:e0180936.
    PubMed     Abstract available


  1254. OLIVEIRA LR, Gehara MCM, Fraga LD, Lopes F, et al
    Ancient female philopatry, asymmetric male gene flow, and synchronous population expansion support the influence of climatic oscillations on the evolution of South American sea lion (Otaria flavescens).
    PLoS One. 2017;12:e0179442.
    PubMed     Abstract available


  1255. SINGH A, Sharma AK, Singh NK, Sharma TR, et al
    PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.
    PLoS One. 2017;12:e0179736.
    PubMed     Abstract available


  1256. HAN Z, Huang H, Gao Y, Huang Q, et al
    Functional annotation of Alzheimer's disease associated loci revealed by GWASs.
    PLoS One. 2017;12:e0179677.
    PubMed     Abstract available


  1257. DUNCAN C, Jamieson FB, Troudt J, Izzo L, et al
    Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion.
    PLoS One. 2017;12:e0179996.
    PubMed     Abstract available


  1258. XU K, Niu Q, Zhao H, Du Y, et al
    Transcriptomic analysis to uncover genes affecting cold resistance in the Chinese honey bee (Apis cerana cerana).
    PLoS One. 2017;12:e0179922.
    PubMed     Abstract available


  1259. MACKIEWICZ P, Moska M, Wierzbicki H, Gagat P, et al
    Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group.
    PLoS One. 2017;12:e0179760.
    PubMed     Abstract available


  1260. WU YH, Cheng H, Xu L, Jin XB, et al
    Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater.
    PLoS One. 2017;12:e0179997.
    PubMed     Abstract available


  1261. SUSEK K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, et al
    Epigenomic diversification within the genus Lupinus.
    PLoS One. 2017;12:e0179821.
    PubMed     Abstract available


  1262. LISTL D, Poschlod P, Reisch C
    Phylogeography of a tough rock survivor in European dry grasslands.
    PLoS One. 2017;12:e0179961.
    PubMed     Abstract available


  1263. RIZAL G, Karki S, Thakur V, Wanchana S, et al
    A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio.
    PLoS One. 2017;12:e0179567.
    PubMed     Abstract available


  1264. BWOGI J, Jere KC, Karamagi C, Byarugaba DK, et al
    Whole genome analysis of selected human and animal rotaviruses identified in Uganda from 2012 to 2014 reveals complex genome reassortment events between human, bovine, caprine and porcine strains.
    PLoS One. 2017;12:e0178855.
    PubMed     Abstract available


  1265. KRUSE A, Fattah-Hosseini S, Saha S, Johnson R, et al
    Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.
    PLoS One. 2017;12:e0179531.
    PubMed     Abstract available


  1266. RIVERA M, Ramos Y, Rodriguez-Valentin M, Lopez-Acevedo S, et al
    Targeting multiple pro-apoptotic signaling pathways with curcumin in prostate cancer cells.
    PLoS One. 2017;12:e0179587.
    PubMed     Abstract available


  1267. ADACHI S
    Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data.
    PLoS One. 2017;12:e0179180.
    PubMed     Abstract available


  1268. PEARSON LJ, Klaharn IY, Thongsawang B, Manuprasert W, et al
    Multiple extracellular vesicle types in peritoneal dialysis effluent are prominent and contain known biomarkers.
    PLoS One. 2017;12:e0178601.
    PubMed     Abstract available


  1269. LUO S, Cao N, Tang Y, Gu W, et al
    Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis.
    PLoS One. 2017;12:e0178549.
    PubMed     Abstract available


  1270. GAMEZ-POZO A, Trilla-Fuertes L, Prado-Vazquez G, Chiva C, et al
    Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics.
    PLoS One. 2017;12:e0178296.
    PubMed     Abstract available


  1271. PANNACCIULLI FG, Maltagliati F, de Guttry C, Achituv Y, et al
    Phylogeography on the rocks: The contribution of current and historical factors in shaping the genetic structure of Chthamalus montagui (Crustacea, Cirripedia).
    PLoS One. 2017;12:e0178287.
    PubMed     Abstract available


  1272. SAHLBERG BANG C, Demirel I, Kruse R, Persson K, et al
    Global gene expression profiling and antibiotic susceptibility after repeated exposure to the carbon monoxide-releasing molecule-2 (CORM-2) in multidrug-resistant ESBL-producing uropathogenic Escherichia coli.
    PLoS One. 2017;12:e0178541.
    PubMed     Abstract available


  1273. NYINE M, Uwimana B, Swennen R, Batte M, et al
    Trait variation and genetic diversity in a banana genomic selection training population.
    PLoS One. 2017;12:e0178734.
    PubMed     Abstract available


  1274. WANG Y, Liu A, Li W, Jiang Y, et al
    Comparative proteomic analysis of eggplant (Solanum melongena L.) heterostylous pistil development.
    PLoS One. 2017;12:e0179018.
    PubMed     Abstract available


  1275. BARANZELLI MC, Cosacov A, Ferreiro G, Johnson LA, et al
    Travelling to the south: Phylogeographic spatial diffusion model in Monttea aphylla (Plantaginaceae), an endemic plant of the Monte Desert.
    PLoS One. 2017;12:e0178827.
    PubMed     Abstract available


  1276. LV Y
    Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus.
    PLoS One. 2017;12:e0178603.
    PubMed     Abstract available


  1277. KIM JK, Bae SE, Lee SJ, Yoon MG, et al
    New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae).
    PLoS One. 2017;12:e0178001.
    PubMed     Abstract available


  1278. BECKER MG, Walker PL, Pulgar-Vidal NC, Belmonte MF, et al
    SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets.
    PLoS One. 2017;12:e0178256.
    PubMed     Abstract available


  1279. BELL KL, Hamm CA, Shapiro AM, Nice CC, et al
    Sympatric, temporally isolated populations of the pine white butterfly Neophasia menapia, are morphologically and genetically differentiated.
    PLoS One. 2017;12:e0176989.
    PubMed     Abstract available


  1280. KEPPLINGER D, Takhar M, Sasaki M, Hollander Z, et al
    PGCA: An algorithm to link protein groups created from MS/MS data.
    PLoS One. 2017;12:e0177569.
    PubMed     Abstract available


  1281. MEI Y, Bi WL, Greenwald NF, Agar NY, et al
    Genomic profile of human meningioma cell lines.
    PLoS One. 2017;12:e0178322.
    PubMed     Abstract available


  1282. KEARNEY P, Hunsucker SW, Li XJ, Porter A, et al
    An integrated risk predictor for pulmonary nodules.
    PLoS One. 2017;12:e0177635.
    PubMed     Abstract available


  1283. ZAZA G, Dalla Gassa A, Felis G, Granata S, et al
    Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen.
    PLoS One. 2017;12:e0178228.
    PubMed     Abstract available


  1284. PANTOJA Y, Pinheiro K, Veras A, Araujo F, et al
    PanWeb: A web interface for pan-genomic analysis.
    PLoS One. 2017;12:e0178154.
    PubMed     Abstract available


  1285. LEWANDOWSKA DW, Schreiber PW, Schuurmans MM, Ruehe B, et al
    Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection.
    PLoS One. 2017;12:e0177340.
    PubMed     Abstract available


  1286. NEUDITSCHKO M, Raadsma HW, Khatkar MS, Jonas E, et al
    Identification of key contributors in complex population structures.
    PLoS One. 2017;12:e0177638.
    PubMed     Abstract available


  1287. HAJRAH NH, Obaid AY, Atef A, Ramadan AM, et al
    Transcriptomic analysis of salt stress responsive genes in Rhazya stricta.
    PLoS One. 2017;12:e0177589.
    PubMed     Abstract available


  1288. MONDEJAR R, Perez C, Onaindia A, Martinez N, et al
    Molecular basis of targeted therapy in T/NK-cell lymphoma/leukemia: A comprehensive genomic and immunohistochemical analysis of a panel of 33 cell lines.
    PLoS One. 2017;12:e0177524.
    PubMed     Abstract available


  1289. ZHANG W, Xu J, Li Y, Zou X, et al
    A new two-stage method for revealing missing parts of edges in protein-protein interaction networks.
    PLoS One. 2017;12:e0177029.
    PubMed     Abstract available


  1290. VAHIA MN, Yadav N, Ladiwala U, Mathur D, et al
    A diffusion based study of population dynamics: Prehistoric migrations into South Asia.
    PLoS One. 2017;12:e0176985.
    PubMed     Abstract available


  1291. CASTLEY A, Sawleshwarkar S, Varma R, Herring B, et al
    A national study of the molecular epidemiology of HIV-1 in Australia 2005-2012.
    PLoS One. 2017;12:e0170601.
    PubMed     Abstract available


  1292. HAEUSERMANN T, Greshake B, Blasimme A, Irdam D, et al
    Open sharing of genomic data: Who does it and why?
    PLoS One. 2017;12:e0177158.
    PubMed     Abstract available


  1293. TRIFILETTI DM, Sturz VN, Showalter TN, Lobo JM, et al
    Towards decision-making using individualized risk estimates for personalized medicine: A systematic review of genomic classifiers of solid tumors.
    PLoS One. 2017;12:e0176388.
    PubMed     Abstract available


  1294. DANTAS RCC, Silva RTE, Ferreira ML, Goncalves IR, et al
    Molecular epidemiological survey of bacteremia by multidrug resistant Pseudomonas aeruginosa: the relevance of intrinsic resistance mechanisms.
    PLoS One. 2017;12:e0176774.
    PubMed     Abstract available


  1295. PLAIRE D, Puaud S, Marsolier-Kergoat MC, Elalouf JM, et al
    Comparative analysis of the sensitivity of metagenomic sequencing and PCR to detect a biowarfare simulant (Bacillus atrophaeus) in soil samples.
    PLoS One. 2017;12:e0177112.
    PubMed     Abstract available


  1296. KOC I, Caetano-Anolles G
    The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.
    PLoS One. 2017;12:e0176129.
    PubMed     Abstract available


  1297. PETERSEN TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, et al
    MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
    PLoS One. 2017;12:e0176469.
    PubMed     Abstract available


  1298. ROZENBLUM E, Sotelo-Silveira JR, Kim GY, Zhu JY, et al
    Novel near-diploid ovarian cancer cell line derived from a highly aneuploid metastatic ovarian tumor.
    PLoS One. 2017;12:e0182610.
    PubMed     Abstract available


  1299. TONG ML, Zhao Q, Liu LL, Zhu XZ, et al
    Whole genome sequence of the Treponema pallidum subsp. pallidum strain Amoy: An Asian isolate highly similar to SS14.
    PLoS One. 2017;12:e0182768.
    PubMed     Abstract available


  1300. NG PK, Lin SM, Lim PE, Hurtado AQ, et al
    Genetic and morphological analyses of Gracilaria firma and G. changii (Gracilariaceae, Rhodophyta), the commercially important agarophytes in western Pacific.
    PLoS One. 2017;12:e0182176.
    PubMed     Abstract available


  1301. TANI H, Takeshita JI, Aoki H, Nakamura K, et al
    Identification of RNA biomarkers for chemical safety screening in mouse embryonic stem cells using RNA deep sequencing analysis.
    PLoS One. 2017;12:e0182032.
    PubMed     Abstract available


  1302. DENG M, Dong Y, Zhao Z, Li Y, et al
    Dissecting the proteome dynamics of the salt stress induced changes in the leaf of diploid and autotetraploid Paulownia fortunei.
    PLoS One. 2017;12:e0181937.
    PubMed     Abstract available


  1303. BECK SV, Carvalho GR, Barlow A, Ruber L, et al
    Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax.
    PLoS One. 2017;12:e0179557.
    PubMed     Abstract available


  1304. YAKOVLEVA A, Plieskatt JL, Jensen S, Humeida R, et al
    Fit for genomic and proteomic purposes: Sampling the fitness of nucleic acid and protein derivatives from formalin fixed paraffin embedded tissue.
    PLoS One. 2017;12:e0181756.
    PubMed     Abstract available


  1305. SORIA-BOIX C, Donat-Torres MP, Urios V
    Contacts in the last 90,000 years over the Strait of Gibraltar evidenced by genetic analysis of wild boar (Sus scrofa).
    PLoS One. 2017;12:e0181929.
    PubMed     Abstract available


  1306. CHO HR, Kim HS, Park JS, Park SC, et al
    Construction and characterization of the Korean whole saliva proteome to determine ethnic differences in human saliva proteome.
    PLoS One. 2017;12:e0181765.
    PubMed     Abstract available


  1307. BRUNELLI A, Kampuansai J, Seielstad M, Lomthaisong K, et al
    Y chromosomal evidence on the origin of northern Thai people.
    PLoS One. 2017;12:e0181935.
    PubMed     Abstract available


  1308. PERSYN E, Karakachoff M, Le Scouarnec S, Le Clezio C, et al
    DoEstRare: A statistical test to identify local enrichments in rare genomic variants associated with disease.
    PLoS One. 2017;12:e0179364.
    PubMed     Abstract available


  1309. ZHANG H, Yin L, Wang H, Wang G, et al
    Genome-wide identification of Hami melon miRNAs with putative roles during fruit development.
    PLoS One. 2017;12:e0180600.
    PubMed     Abstract available


  1310. PASCUAL T, Apellaniz-Ruiz M, Pernaut C, Cueto-Felgueroso C, et al
    Polymorphisms associated with everolimus pharmacokinetics, toxicity and survival in metastatic breast cancer.
    PLoS One. 2017;12:e0180192.
    PubMed     Abstract available


  1311. ABERNATHY J, Brezas A, Snekvik KR, Hardy RW, et al
    Integrative functional analyses using rainbow trout selected for tolerance to plant diets reveal nutrigenomic signatures for soy utilization without the concurrence of enteritis.
    PLoS One. 2017;12:e0180972.
    PubMed     Abstract available


  1312. GUO P, Zhu B, Xu L, Niu H, et al
    Genomic prediction with parallel computing for slaughter traits in Chinese Simmental beef cattle using high-density genotypes.
    PLoS One. 2017;12:e0179885.
    PubMed     Abstract available


  1313. ALANAGREH L, Pegg C, Harikumar A, Buchheim M, et al
    Assessing intragenomic variation of the internal transcribed spacer two: Adapting the Illumina metagenomics protocol.
    PLoS One. 2017;12:e0181491.
    PubMed     Abstract available


  1314. RYU YS, Chandran SP, Kim K, Lee SK, et al
    Oligo- and dsDNA-mediated genome editing using a tetA dual selection system in Escherichia coli.
    PLoS One. 2017;12:e0181501.
    PubMed     Abstract available


  1315. ALLEVATO M, Bolotin E, Grossman M, Mane-Padros D, et al
    Sequence-specific DNA binding by MYC/MAX to low-affinity non-E-box motifs.
    PLoS One. 2017;12:e0180147.
    PubMed     Abstract available


  1316. KLYCZEK KK, Bonilla JA, Jacobs-Sera D, Adair TL, et al
    Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages.
    PLoS One. 2017;12:e0180517.
    PubMed     Abstract available


  1317. DOU L, Jia X, Wei H, Fan S, et al
    Global analysis of DNA methylation in young (J1) and senescent (J2) Gossypium hirsutum L. cotyledons by MeDIP-Seq.
    PLoS One. 2017;12:e0179141.
    PubMed     Abstract available


  1318. PINNA C, Carta L, Deiana V, Camarda I, et al
    Phyto-toponyms of Arbutus unedo L. and their distribution in Sardinia (Italy).
    PLoS One. 2017;12:e0181174.
    PubMed     Abstract available


  1319. JAISWAL RK, Kumar P, Sharma A, Mishra DK, et al
    Proteomic identification of proteins differentially expressed following overexpression of hTERT (human telomerase reverse transcriptase) in cancer cells.
    PLoS One. 2017;12:e0181027.
    PubMed     Abstract available


  1320. WANG H, Ba H, Yang C, Zhang J, et al
    Inner and inter population structure construction of Chinese Jiangsu Han population based on Y23 STR system.
    PLoS One. 2017;12:e0180921.
    PubMed     Abstract available


  1321. FAN W, Zhong Y, Qin M, Lin B, et al
    Differentially expressed microRNAs in diapausing versus HCl-treated Bombyx embryos.
    PLoS One. 2017;12:e0180085.
    PubMed     Abstract available


  1322. XU EG, Mager EM, Grosell M, Stieglitz JD, et al
    Developmental transcriptomic analyses for mechanistic insights into critical pathways involved in embryogenesis of pelagic mahi-mahi (Coryphaena hippurus).
    PLoS One. 2017;12:e0180454.
    PubMed     Abstract available


  1323. ZEREYESUS YA, Dalton TJ
    Rates of return to sorghum and millet research investments: A meta-analysis.
    PLoS One. 2017;12:e0180414.
    PubMed     Abstract available


  1324. BAI Y, Li X
    Late Miocene Pseudolarix amabilis bract-scale complex from Zhejiang, East China.
    PLoS One. 2017;12:e0180979.
    PubMed     Abstract available


  1325. WEN F, Wu X, Li T, Jia M, et al
    Genome-wide survey of heat shock factors and heat shock protein 70s and their regulatory network under abiotic stresses in Brachypodium distachyon.
    PLoS One. 2017;12:e0180352.
    PubMed     Abstract available


  1326. HAN B, Zhang S, Zeng F, Mao J, et al
    Nutritional and reproductive signaling revealed by comparative gene expression analysis in Chrysopa pallens (Rambur) at different nutritional statuses.
    PLoS One. 2017;12:e0180373.
    PubMed     Abstract available


  1327. EZURA K, Ji-Seong K, Mori K, Suzuki Y, et al
    Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum).
    PLoS One. 2017;12:e0180003.
    PubMed     Abstract available


  1328. ZEHENDER G, Veo C, Ebranati E, Carta V, et al
    Reconstructing the recent West Nile virus lineage 2 epidemic in Europe and Italy using discrete and continuous phylogeography.
    PLoS One. 2017;12:e0179679.
    PubMed     Abstract available


  1329. ZHOU X, Xing X, Hou J, Liu J, et al
    Quantitative proteomics analysis of proteins involved in alkane uptake comparing the profiling of Pseudomonas aeruginosa SJTD-1 in response to n-octadecane and n-hexadecane.
    PLoS One. 2017;12:e0179842.
    PubMed     Abstract available


  1330. BOVO S, Mazzoni G, Ribani A, Utzeri VJ, et al
    A viral metagenomic approach on a non-metagenomic experiment: Mining next generation sequencing datasets from pig DNA identified several porcine parvoviruses for a retrospective evaluation of viral infections.
    PLoS One. 2017;12:e0179462.
    PubMed     Abstract available


  1331. FENG B, Guo Q, Zheng K, Qin Y, et al
    Antennal transcriptome analysis of the piercing moth Oraesia emarginata (Lepidoptera: Noctuidae).
    PLoS One. 2017;12:e0179433.
    PubMed     Abstract available


  1332. CUI H, Bansal V, Grunert M, Malecova B, et al
    Muscle-relevant genes marked by stable H3K4me2/3 profiles and enriched MyoD binding during myogenic differentiation.
    PLoS One. 2017;12:e0179464.
    PubMed     Abstract available


  1333. D'IPPOLITO S, Di Simone N, Orteschi D, Pomponi MG, et al
    The chromosome analysis of the miscarriage tissue. Miscarried embryo/fetal crown rump length (CRL) measurement: A practical use.
    PLoS One. 2017;12:e0178113.
    PubMed     Abstract available


  1334. CHEN X, Zhang M, Tan J, Huang S, et al
    Comparative transcriptome analysis provides insights into molecular mechanisms for parthenocarpic fruit development in eggplant (Solanum melongena L.).
    PLoS One. 2017;12:e0179491.
    PubMed     Abstract available


  1335. GOMEZ-GARZON C, Hernandez-Santana A, Dussan J
    A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials.
    PLoS One. 2017;12:e0179666.
    PubMed     Abstract available


  1336. HU J, Lei L, de Meaux J
    Temporal fitness fluctuations in experimental Arabidopsis thaliana populations.
    PLoS One. 2017;12:e0178990.
    PubMed     Abstract available


  1337. NEY G, Schul J
    Population structure within the one-dimensional range of a coastal plain katydid.
    PLoS One. 2017;12:e0179361.
    PubMed     Abstract available


  1338. DE AZEVEDO PEIXOTO L, Moellers TC, Zhang J, Lorenz AJ, et al
    Leveraging genomic prediction to scan germplasm collection for crop improvement.
    PLoS One. 2017;12:e0179191.
    PubMed     Abstract available


  1339. AGUILAR D, Pinart M, Koppelman GH, Saeys Y, et al
    Computational analysis of multimorbidity between asthma, eczema and rhinitis.
    PLoS One. 2017;12:e0179125.
    PubMed     Abstract available


  1340. SUN Y, Chen C, Gao J, Abbas MN, et al
    Comparative mitochondrial genome analysis of Daphnis nerii and other lepidopteran insects reveals conserved mitochondrial genome organization and phylogenetic relationships.
    PLoS One. 2017;12:e0178773.
    PubMed     Abstract available


  1341. TOMAR S, Sethi R, Sundar G, Quah TC, et al
    Mutation spectrum of RB1 mutations in retinoblastoma cases from Singapore with implications for genetic management and counselling.
    PLoS One. 2017;12:e0178776.
    PubMed     Abstract available


  1342. MORENO PS, Wagner J, Mansfield CS, Stevens M, et al
    Characterisation of the canine faecal virome in healthy dogs and dogs with acute diarrhoea using shotgun metagenomics.
    PLoS One. 2017;12:e0178433.
    PubMed     Abstract available


  1343. PLANCHON M, Leger T, Spalla O, Huber G, et al
    Metabolomic and proteomic investigations of impacts of titanium dioxide nanoparticles on Escherichia coli.
    PLoS One. 2017;12:e0178437.
    PubMed     Abstract available


  1344. LIANG D, Leung RKK, Lee SS, Kam KM, et al
    Insights into intercontinental spread of Zika virus.
    PLoS One. 2017;12:e0176710.
    PubMed     Abstract available


  1345. KIM JH, Kang JH, Jang JE, Choi SK, et al
    Population genetic structure of eelgrass (Zostera marina) on the Korean coast: Current status and conservation implications for future management.
    PLoS One. 2017;12:e0174105.
    PubMed     Abstract available


  1346. NYALWIDHE JO, Grzesik WJ, Burch TC, Semeraro ML, et al
    Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes.
    PLoS One. 2017;12:e0183908.
    PubMed     Abstract available


  1347. LIN Y, Zhu J, Wang Y, Li Q, et al
    Identification of differentially expressed genes through RNA sequencing in goats (Capra hircus) at different postnatal stages.
    PLoS One. 2017;12:e0182602.
    PubMed     Abstract available


  1348. GUSSOW AB, Copeland BR, Dhindsa RS, Wang Q, et al
    Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics.
    PLoS One. 2017;12:e0181604.
    PubMed     Abstract available


  1349. CONVERSE PE, Kuchta SR, Hauswaldt JS, Roosenburg WM, et al
    Turtle soup, Prohibition, and the population genetic structure of Diamondback Terrapins (Malaclemys terrapin).
    PLoS One. 2017;12:e0181898.
    PubMed     Abstract available


  1350. JI ZH, Chen J, Gao W, Zhang JY, et al
    Cutaneous transcriptome analysis in NIH hairless mice.
    PLoS One. 2017;12:e0182463.
    PubMed     Abstract available


  1351. YAN J, Zhang P, Jiao F, Wang Q, et al
    Quantitative proteomics in A30P*A53T alpha-synuclein transgenic mice reveals upregulation of Sel1l.
    PLoS One. 2017;12:e0182092.
    PubMed     Abstract available


  1352. DREWRY DH, Wells CI, Andrews DM, Angell R, et al
    Progress towards a public chemogenomic set for protein kinases and a call for contributions.
    PLoS One. 2017;12:e0181585.
    PubMed     Abstract available


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    Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.
    PLoS One. 2017;12:e0181826.
    PubMed     Abstract available


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    metaSNV: A tool for metagenomic strain level analysis.
    PLoS One. 2017;12:e0182392.
    PubMed     Abstract available


  1355. LAVOUE S, Bertrand JAM, Wang HY, Chen WJ, et al
    Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific.
    PLoS One. 2017;12:e0181329.
    PubMed     Abstract available


  1356. FELTEN A, Guillier L, Radomski N, Mistou MY, et al
    Genome Target Evaluator (GTEvaluator): A workflow exploiting genome dataset to measure the sensitivity and specificity of genetic markers.
    PLoS One. 2017;12:e0182082.
    PubMed     Abstract available


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    Phylogeography in Nassarius mud snails: Complex patterns in congeneric species.
    PLoS One. 2017;12:e0180728.
    PubMed     Abstract available


  1358. IANGRAI B, Pattanayak A, Khongwir DEA, Pale G, et al
    Development and characterization of a new set of genomic microsatellite markers in rice bean (Vigna umbellata (Thunb.) Ohwi and Ohashi) and their utilization in genetic diversity analysis of collections from North East India.
    PLoS One. 2017;12:e0179801.
    PubMed     Abstract available


  1359. CALAZANS C SH, Walters LJ, Fernandes FC, Ferreira CEL, et al
    Genetic structure provides insights into the geographic origins and temporal change in the invasive charru mussel (Sururu) in the southeastern United States.
    PLoS One. 2017;12:e0180619.
    PubMed     Abstract available


  1360. WILLIAMS KE, Huyvaert KP, Piaggio AJ
    Clearing muddied waters: Capture of environmental DNA from turbid waters.
    PLoS One. 2017;12:e0179282.
    PubMed     Abstract available


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    Evaluating phecodes, clinical classification software, and ICD-9-CM codes for phenome-wide association studies in the electronic health record.
    PLoS One. 2017;12:e0175508.
    PubMed     Abstract available


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    Genetic differentiation of spring-spawning and fall-spawning male Atlantic sturgeon in the James River, Virginia.
    PLoS One. 2017;12:e0179661.
    PubMed     Abstract available


  1363. CROUZET M, Claverol S, Lomenech AM, Le Senechal C, et al
    Pseudomonas aeruginosa cells attached to a surface display a typical proteome early as 20 minutes of incubation.
    PLoS One. 2017;12:e0180341.
    PubMed     Abstract available


  1364. REISBERG S, Iljasenko T, Lall K, Fischer K, et al
    Comparing distributions of polygenic risk scores of type 2 diabetes and coronary heart disease within different populations.
    PLoS One. 2017;12:e0179238.
    PubMed     Abstract available


  1365. BOGACKA I, Paukszto L, Jastrzebski JP, Czerwinska J, et al
    Seasonal differences in the testicular transcriptome profile of free-living European beavers (Castor fiber L.) determined by the RNA-Seq method.
    PLoS One. 2017;12:e0180323.
    PubMed     Abstract available


  1366. PALMA RE, Gutierrez-Tapia P, Gonzalez JF, Boric-Bargetto D, et al
    Mountaintops phylogeography: A case study using small mammals from the Andes and the coast of central Chile.
    PLoS One. 2017;12:e0180231.
    PubMed     Abstract available


  1367. OSEI SEKYERE J, Amoako DG
    Genomic and phenotypic characterisation of fluoroquinolone resistance mechanisms in Enterobacteriaceae in Durban, South Africa.
    PLoS One. 2017;12:e0178888.
    PubMed     Abstract available


  1368. MCMAHAN CD, Ginger L, Cage M, David KT, et al
    Pleistocene to holocene expansion of the black-belt cichlid in Central America, Vieja maculicauda (Teleostei: Cichlidae).
    PLoS One. 2017;12:e0178439.
    PubMed     Abstract available


  1369. PENG T, Ma L, Feng X, Tao J, et al
    Genomic and transcriptomic analyses reveal adaptation mechanisms of an Acidithiobacillus ferrivorans strain YL15 to alpine acid mine drainage.
    PLoS One. 2017;12:e0178008.
    PubMed     Abstract available


  1370. LIN Q, Liang JR, Huang QQ, Luo CS, et al
    Differential cellular responses associated with oxidative stress and cell fate decision under nitrate and phosphate limitations in Thalassiosira pseudonana: Comparative proteomics.
    PLoS One. 2017;12:e0184849.
    PubMed     Abstract available


  1371. PAN L, Yang Z, Wang J, Wang P, et al
    Comparative proteomic analyses reveal the proteome response to short-term drought in Italian ryegrass (Lolium multiflorum).
    PLoS One. 2017;12:e0184289.
    PubMed     Abstract available


  1372. ROY J, Wycislo KL, Pondenis H, Fan TM, et al
    Comparative proteomic investigation of metastatic and non-metastatic osteosarcoma cells of human and canine origin.
    PLoS One. 2017;12:e0183930.
    PubMed     Abstract available


  1373. MARTINA F, Beccuti M, Balbo G, Cordero F, et al
    Peculiar Genes Selection: A new features selection method to improve classification performances in imbalanced data sets.
    PLoS One. 2017;12:e0177475.
    PubMed     Abstract available


  1374. ASAF S, Khan AL, Aaqil Khan M, Muhammad Imran Q, et al
    Comparative analysis of complete plastid genomes from wild soybean (Glycine soja) and nine other Glycine species.
    PLoS One. 2017;12:e0182281.
    PubMed     Abstract available


  1375. ALEXANDER KL, Katz J, Elson CO
    CBirTox is a selective antigen-specific agonist of the Treg-IgA-microbiota homeostatic pathway.
    PLoS One. 2017;12:e0181866.
    PubMed     Abstract available


  1376. POTRIQUET J, Laohaviroj M, Bethony JM, Mulvenna J, et al
    A modified FASP protocol for high-throughput preparation of protein samples for mass spectrometry.
    PLoS One. 2017;12:e0175967.
    PubMed     Abstract available


  1377. LONG Z, Duan G, Li H, Yi T, et al
    Ubiquinol-cytochrome c reductase core protein 1 may be involved in delayed cardioprotection from preconditioning induced by diazoxide.
    PLoS One. 2017;12:e0181903.
    PubMed     Abstract available


  1378. MAKONDI PT, Chu CM, Wei PL, Chang YJ, et al
    Prediction of novel target genes and pathways involved in irinotecan-resistant colorectal cancer.
    PLoS One. 2017;12:e0180616.
    PubMed     Abstract available


  1379. MUNUNG NS, Mayosi BM, de Vries J
    Equity in international health research collaborations in Africa: Perceptions and expectations of African researchers.
    PLoS One. 2017;12:e0186237.
    PubMed     Abstract available


  1380. MENA M, Lloveras B, Tous S, Bogers J, et al
    Development and validation of a protocol for optimizing the use of paraffin blocks in molecular epidemiological studies: The example from the HPV-AHEAD study.
    PLoS One. 2017;12:e0184520.
    PubMed     Abstract available


  1381. YANG EH, Rode J, Howlader MA, Eckermann M, et al
    Galectin-3 alters the lateral mobility and clustering of beta1-integrin receptors.
    PLoS One. 2017;12:e0184378.
    PubMed     Abstract available


  1382. MARQUEZ-RODAS I, Pollan M, Escudero MJ, Ruiz A, et al
    Frequency of breast cancer with hereditary risk features in Spain: Analysis from GEICAM "El Alamo III" retrospective study.
    PLoS One. 2017;12:e0184181.
    PubMed     Abstract available


  1383. RUDEBUSCH J, Benkner A, Poesch A, Dorr M, et al
    Dynamic adaptation of myocardial proteome during heart failure development.
    PLoS One. 2017;12:e0185915.
    PubMed     Abstract available


  1384. PILLING LC, Atkins JL, Duff MO, Beaumont RN, et al
    Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.
    PLoS One. 2017;12:e0185083.
    PubMed     Abstract available


  1385. MORAN EV, Reid A, Levine JM
    Population genetics and adaptation to climate along elevation gradients in invasive Solidago canadensis.
    PLoS One. 2017;12:e0185539.
    PubMed     Abstract available


  1386. TONUSSI RL, Silva RMO, Magalhaes AFB, Espigolan R, et al
    Application of single step genomic BLUP under different uncertain paternity scenarios using simulated data.
    PLoS One. 2017;12:e0181752.
    PubMed     Abstract available


  1387. TRAPANESE M, Buglione M, Maselli V, Petrelli S, et al
    The first transcriptome of Italian wall lizard, a new tool to infer about the Island Syndrome.
    PLoS One. 2017;12:e0185227.
    PubMed     Abstract available


  1388. WELSH EA, Stewart PA, Kuenzi BM, Eschrich JA, et al
    Escape Excel: A tool for preventing gene symbol and accession conversion errors.
    PLoS One. 2017;12:e0185207.
    PubMed     Abstract available


  1389. LOPES CARDOSO D, Sharpe C
    Relating protein functional diversity to cell type number identifies genes that determine dynamic aspects of chromatin organisation as potential contributors to organismal complexity.
    PLoS One. 2017;12:e0185409.
    PubMed     Abstract available


  1390. LABIRAN C, Rowen D, Clarke IN, Marsh P, et al
    Detailed molecular epidemiology of Chlamydia trachomatis in the population of Southampton attending the genitourinary medicine clinic in 2012-13 reveals the presence of long established genotypes and transitory sexual networks.
    PLoS One. 2017;12:e0185059.
    PubMed     Abstract available


  1391. JOHNSTON CD, Skeete CA, Fomenkov A, Roberts RJ, et al
    Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia.
    PLoS One. 2017;12:e0185234.
    PubMed     Abstract available


  1392. SAGHAPOUR E, Kermani S, Sehhati M
    A novel feature ranking method for prediction of cancer stages using proteomics data.
    PLoS One. 2017;12:e0184203.
    PubMed     Abstract available


  1393. WILKE ABB, Wilk-da-Silva R, Marrelli MT
    Microgeographic population structuring of Aedes aegypti (Diptera: Culicidae).
    PLoS One. 2017;12:e0185150.
    PubMed     Abstract available


  1394. UNGARO A, Pech N, Martin JF, McCairns RJS, et al
    Challenges and advances for transcriptome assembly in non-model species.
    PLoS One. 2017;12:e0185020.
    PubMed     Abstract available


  1395. YI L, Hu N, Yin J, Sun J, et al
    Up-regulation of calreticulin in mouse liver tissues after long-term irradiation with low-dose-rate gamma rays.
    PLoS One. 2017;12:e0182671.
    PubMed     Abstract available


  1396. TIBUAKUU M, Kamimura D, Kianoush S, DeFilippis AP, et al
    The association between cigarette smoking and inflammation: The Genetic Epidemiology Network of Arteriopathy (GENOA) study.
    PLoS One. 2017;12:e0184914.
    PubMed     Abstract available


  1397. YANG Z, Zhang Y, Jiang Y, Zhu F, et al
    Transcriptional responses in the hepatopancreas of Eriocheir sinensis exposed to deltamethrin.
    PLoS One. 2017;12:e0184581.
    PubMed     Abstract available


  1398. HRANILOVIC A, Bely M, Masneuf-Pomarede I, Jiranek V, et al
    The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems.
    PLoS One. 2017;12:e0184652.
    PubMed     Abstract available


  1399. ELDERMAN M, Sovran B, Hugenholtz F, Graversen K, et al
    The effect of age on the intestinal mucus thickness, microbiota composition and immunity in relation to sex in mice.
    PLoS One. 2017;12:e0184274.
    PubMed     Abstract available


  1400. BELAIR DG, Wolf CJ, Wood C, Ren H, et al
    Engineering human cell spheroids to model embryonic tissue fusion in vitro.
    PLoS One. 2017;12:e0184155.
    PubMed     Abstract available


  1401. AJORLOO F, Vaezi M, Saadat A, Safaee SR, et al
    A systems medicine approach for finding target proteins affecting treatment outcomes in patients with non-Hodgkin lymphoma.
    PLoS One. 2017;12:e0183969.
    PubMed     Abstract available


  1402. MEZZASALMA V, Sandionigi A, Bruni I, Bruno A, et al
    Grape microbiome as a reliable and persistent signature of field origin and environmental conditions in Cannonau wine production.
    PLoS One. 2017;12:e0184615.
    PubMed     Abstract available


  1403. BLAGODATSKIKH KA, Kramarov VM, Barsova EV, Garkovenko AV, et al
    Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA.
    PLoS One. 2017;12:e0184507.
    PubMed     Abstract available


  1404. JENKINS TP, Rathnayaka Y, Perera PK, Peachey LE, et al
    Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition.
    PLoS One. 2017;12:e0184719.
    PubMed     Abstract available


  1405. CIESLAK M, Wahli T, Diserens N, Haenen OLM, et al
    Phylogeny of the infectious hematopoietic necrosis virus in European aquaculture.
    PLoS One. 2017;12:e0184490.
    PubMed     Abstract available


  1406. POKORN T, Radisek S, Javornik B, Stajner N, et al
    Development of hop transcriptome to support research into host-viroid interactions.
    PLoS One. 2017;12:e0184528.
    PubMed     Abstract available


  1407. FESTA S, Coppotelli BM, Madueno L, Loviso CL, et al
    Assigning ecological roles to the populations belonging to a phenanthrene-degrading bacterial consortium using omic approaches.
    PLoS One. 2017;12:e0184505.
    PubMed     Abstract available


  1408. ZHU Q, Liao BY, Li P, Li JC, et al
    Phylogeographic pattern suggests a general northeastward dispersal in the distribution of Machilus pauhoi in South China.
    PLoS One. 2017;12:e0184456.
    PubMed     Abstract available


  1409. GENG P, Tian S, Yuan Z, Hu X, et al
    Identification and genomic comparison of temperate bacteriophages derived from emetic Bacillus cereus.
    PLoS One. 2017;12:e0184572.
    PubMed     Abstract available


  1410. ROODT D, Lohaus R, Sterck L, Swanepoel RL, et al
    Evidence for an ancient whole genome duplication in the cycad lineage.
    PLoS One. 2017;12:e0184454.
    PubMed     Abstract available


  1411. LORANT A, Pedersen S, Holst I, Hufford MB, et al
    The potential role of genetic assimilation during maize domestication.
    PLoS One. 2017;12:e0184202.
    PubMed     Abstract available


  1412. FERNANDEZ-PEREZ J, Nanton A, Ruiz-Ruano FJ, Camacho JPM, et al
    First complete female mitochondrial genome in four bivalve species genus Donax and their phylogenetic relationships within the Veneroida order.
    PLoS One. 2017;12:e0184464.
    PubMed     Abstract available


  1413. WANG X, Wen X, Zhou J, Qi Y, et al
    MicroRNA-223 and microRNA-21 in peripheral blood B cells associated with progression of primary biliary cholangitis patients.
    PLoS One. 2017;12:e0184292.
    PubMed     Abstract available


  1414. JEONG S, Kim J, Park W, Jeon H, et al
    SEXCMD: Development and validation of sex marker sequences for whole-exome/genome and RNA sequencing.
    PLoS One. 2017;12:e0184087.
    PubMed     Abstract available


  1415. HUANG QF, Trenson S, Zhang ZY, Yang WY, et al
    Urinary Proteomics in Predicting Heart Transplantation Outcomes (uPROPHET)-Rationale and database description.
    PLoS One. 2017;12:e0184443.
    PubMed     Abstract available


  1416. BESTER-VAN DER MERWE AE, Bitalo D, Cuevas JM, Ovenden J, et al
    Population genetics of Southern Hemisphere tope shark (Galeorhinus galeus): Intercontinental divergence and constrained gene flow at different geographical scales.
    PLoS One. 2017;12:e0184481.
    PubMed     Abstract available


  1417. SINGH RP, Runthala A, Khan S, Jha PN, et al
    Quantitative proteomics analysis reveals the tolerance of wheat to salt stress in response to Enterobacter cloacae SBP-8.
    PLoS One. 2017;12:e0183513.
    PubMed     Abstract available


  1418. MUKHERJEE S, Barash D, Sengupta S
    Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria.
    PLoS One. 2017;12:e0184314.
    PubMed     Abstract available


  1419. CHEN L, Zhang YH, Wang S, Zhang Y, et al
    Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways.
    PLoS One. 2017;12:e0184129.
    PubMed     Abstract available


  1420. MULLER M, Seifert S, Lubbe T, Leuschner C, et al
    De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech.
    PLoS One. 2017;12:e0184167.
    PubMed     Abstract available


  1421. PARK JS, Jung SW, Ki JS, Guo R, et al
    Transfer of the small diatoms Thalassiosira proschkinae and T. spinulata to the genus Minidiscus and their taxonomic re-description.
    PLoS One. 2017;12:e0181980.
    PubMed     Abstract available


  1422. MUSACCHIA F, Vasilev F, Borra M, Biffali E, et al
    De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus.
    PLoS One. 2017;12:e0184090.
    PubMed     Abstract available


  1423. WANG X, Li W, Zhang Y, Feng Y, et al
    Chronic obstructive pulmonary disease candidate gene prioritization based on metabolic networks and functional information.
    PLoS One. 2017;12:e0184299.
    PubMed     Abstract available


  1424. ZHOU R, Lin X, Li DY, Wang XF, et al
    Identification of novel genetic loci for osteoporosis and/or rheumatoid arthritis using cFDR approach.
    PLoS One. 2017;12:e0183842.
    PubMed     Abstract available


  1425. ROSA JD, Weber GG, Cardoso R, Gorski F, et al
    Variability and population genetic structure in Achyrocline flaccida (Weinm.) DC., a species with high value in folk medicine in South America.
    PLoS One. 2017;12:e0183533.
    PubMed     Abstract available


  1426. GUO Y, Wang Z, Guan X, Hu Z, et al
    Proteomic analysis of Potentilla fruticosa L. leaves by iTRAQ reveals responses to heat stress.
    PLoS One. 2017;12:e0182917.
    PubMed     Abstract available


  1427. TOURNEBIZE R, Manel S, Vigouroux Y, Munoz F, et al
    Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda.
    PLoS One. 2017;12:e0183412.
    PubMed     Abstract available


  1428. JIA X, Xi BD, Li MX, Yang Y, et al
    Metaproteomics analysis of the functional insights into microbial communities of combined hydrogen and methane production by anaerobic fermentation from reed straw.
    PLoS One. 2017;12:e0183158.
    PubMed     Abstract available


  1429. MURRAY-DICKSON G, Ghazali M, Ogden R, Brown R, et al
    Phylogeography of the reticulated python (Malayopython reticulatus ssp.): Conservation implications for the worlds' most traded snake species.
    PLoS One. 2017;12:e0182049.
    PubMed     Abstract available


  1430. ABECIA L, Jimenez E, Martinez-Fernandez G, Martin-Garcia AI, et al
    Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats.
    PLoS One. 2017;12:e0182235.
    PubMed     Abstract available


  1431. WANG X, Kong L, Chen J, Matsukuma A, et al
    Phylogeography of bivalve Meretrix petechialis in the Northwestern Pacific indicated by mitochondrial and nuclear DNA data.
    PLoS One. 2017;12:e0183221.
    PubMed     Abstract available


  1432. JINGTING S, Qin X, Yanju S, Ming Z, et al
    Oxidative and glycolytic skeletal muscles show marked differences in gene expression profile in Chinese Qingyuan partridge chickens.
    PLoS One. 2017;12:e0183118.
    PubMed     Abstract available


  1433. RUAN J, Cheng J, Zhang T, Jiang H, et al
    Mitochondrial genome evolution in the Saccharomyces sensu stricto complex.
    PLoS One. 2017;12:e0183035.
    PubMed     Abstract available


  1434. HE T, Zhang H, Wang J, Wu S, et al
    Proteomic comparison by iTRAQ combined with mass spectrometry of egg white proteins in laying hens (Gallus gallus) fed with soybean meal and cottonseed meal.
    PLoS One. 2017;12:e0182886.
    PubMed     Abstract available


  1435. LE TM, Le QVC, Truong DM, Lee HJ, et al
    beta2-microglobulin gene duplication in cetartiodactyla remains intact only in pigs and possibly confers selective advantage to the species.
    PLoS One. 2017;12:e0182322.
    PubMed     Abstract available


  1436. CHEN H, Peng S, Dai L, Zou Q, et al
    Oral microbial community assembly under the influence of periodontitis.
    PLoS One. 2017;12:e0182259.
    PubMed     Abstract available


  1437. MASUOKA H, Shimada K, Kiyosue-Yasuda T, Kiyosue M, et al
    Transition of the intestinal microbiota of cats with age.
    PLoS One. 2017;12:e0181739.
    PubMed     Abstract available


  1438. SANTAMANS AC, Boluda R, Picazo A, Gil C, et al
    Soil features in rookeries of Antarctic penguins reveal sea to land biotransport of chemical pollutants.
    PLoS One. 2017;12:e0181901.
    PubMed     Abstract available


  1439. MATSUYAMA T, Yasuike M, Fujiwara A, Nakamura Y, et al
    A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis.
    PLoS One. 2017;12:e0182280.
    PubMed     Abstract available


  1440. LAKIOTAKI K, Kanterakis A, Kartsaki E, Katsila T, et al
    Exploring public genomics data for population pharmacogenomics.
    PLoS One. 2017;12:e0182138.
    PubMed     Abstract available


  1441. HARRISON SE, Harvey MS, Cooper SJB, Austin AD, et al
    Across the Indian Ocean: A remarkable example of trans-oceanic dispersal in an austral mygalomorph spider.
    PLoS One. 2017;12:e0180139.
    PubMed     Abstract available


  1442. SIMO-RIUDALBAS M, Metallinou M, de Pous P, Els J, et al
    Cryptic diversity in Ptyodactylus (Reptilia: Gekkonidae) from the northern Hajar Mountains of Oman and the United Arab Emirates uncovered by an integrative taxonomic approach.
    PLoS One. 2017;12:e0180397.
    PubMed     Abstract available


  1443. HAMADA N
    Ionizing radiation response of primary normal human lens epithelial cells.
    PLoS One. 2017;12:e0181530.
    PubMed     Abstract available


  1444. GIOUTLAKIS A, Klapa MI, Moschonas NK
    PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology.
    PLoS One. 2017;12:e0186039.
    PubMed     Abstract available


  1445. ARADHYA M, Velasco D, Ibrahimov Z, Toktoraliev B, et al
    Genetic and ecological insights into glacial refugia of walnut (Juglans regia L.).
    PLoS One. 2017;12:e0185974.
    PubMed     Abstract available


  1446. WANG D, Li L, Wu G, Vasseur L, et al
    De novo transcriptome sequencing of Isaria cateniannulata and comparative analysis of gene expression in response to heat and cold stresses.
    PLoS One. 2017;12:e0186040.
    PubMed     Abstract available


  1447. AKPAKA PE, Kissoon S, Jayaratne P, Wilson C, et al
    Genetic characteristics and molecular epidemiology of vancomycin-resistant Enterococci isolates from Caribbean countries.
    PLoS One. 2017;12:e0185920.
    PubMed     Abstract available


  1448. CARLINI DB, Fong DW
    The transcriptomes of cave and surface populations of Gammarus minus (Crustacea: Amphipoda) provide evidence for positive selection on cave downregulated transcripts.
    PLoS One. 2017;12:e0186173.
    PubMed     Abstract available


  1449. REINHOLD D, Morrow JD, Jacobson S, Hu J, et al
    Meta-analysis of peripheral blood gene expression modules for COPD phenotypes.
    PLoS One. 2017;12:e0185682.
    PubMed     Abstract available


  1450. AHMAD J, Bashir H, Bagheri R, Baig A, et al
    Drought and salinity induced changes in ecophysiology and proteomic profile of Parthenium hysterophorus.
    PLoS One. 2017;12:e0185118.
    PubMed     Abstract available


  1451. BRISSE HJ, Blanc T, Schleiermacher G, Mosseri V, et al
    Radiogenomics of neuroblastomas: Relationships between imaging phenotypes, tumor genomic profile and survival.
    PLoS One. 2017;12:e0185190.
    PubMed     Abstract available


  1452. LUAN X, Cao Z, Xing Z, Liu M, et al
    Comparative proteomic analysis of pituitary glands from Huoyan geese between pre-laying and laying periods using an iTRAQ-based approach.
    PLoS One. 2017;12:e0185253.
    PubMed     Abstract available


  1453. GLUCK JM, Herren AW, Yechikov S, Kao HKJ, et al
    Biochemical and biomechanical properties of the pacemaking sinoatrial node extracellular matrix are distinct from contractile left ventricular matrix.
    PLoS One. 2017;12:e0185125.
    PubMed     Abstract available


  1454. MOUSSA TAA, Al-Zahrani HS, Almaghrabi OA, Abdelmoneim TS, et al
    Comparative metagenomics approaches to characterize the soil fungal communities of western coastal region, Saudi Arabia.
    PLoS One. 2017;12:e0185096.
    PubMed     Abstract available


  1455. BOUVIER M, Durrieu S, Gosselin F, Herpigny B, et al
    Use of airborne lidar data to improve plant species richness and diversity monitoring in lowland and mountain forests.
    PLoS One. 2017;12:e0184524.
    PubMed     Abstract available


  1456. JOHANSSON F, Halvarsson P, Mikolajewski DJ, Hoglund J, et al
    Phylogeography and larval spine length of the dragonfly Leucorhinia dubia in Europe.
    PLoS One. 2017;12:e0184596.
    PubMed     Abstract available


  1457. LI Y, Khalafalla AI, Paden CR, Yusof MF, et al
    Identification of diverse viruses in upper respiratory samples in dromedary camels from United Arab Emirates.
    PLoS One. 2017;12:e0184718.
    PubMed     Abstract available


  1458. MEHANNA P, Gagne V, Lajoie M, Spinella JF, et al
    Characterization of the microDNA through the response to chemotherapeutics in lymphoblastoid cell lines.
    PLoS One. 2017;12:e0184365.
    PubMed     Abstract available


  1459. MECH LD, Asa CS, Callahan M, Christensen BW, et al
    Studies of wolf x coyote hybridization via artificial insemination.
    PLoS One. 2017;12:e0184342.
    PubMed     Abstract available


  1460. PARK I, Kim WJ, Yang S, Yeo SM, et al
    The complete chloroplast genome sequence of Aconitum coreanum and Aconitum carmichaelii and comparative analysis with other Aconitum species.
    PLoS One. 2017;12:e0184257.
    PubMed     Abstract available


  1461. HARDY JJ, Mooney SR, Pearson AN, McGuire D, et al
    Assessing the accuracy of blood RNA profiles to identify patients with post-concussion syndrome: A pilot study in a military patient population.
    PLoS One. 2017;12:e0183113.
    PubMed     Abstract available


  1462. HILMARSSON HS, Hytonen T, Isobe S, Goransson M, et al
    Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers.
    PLoS One. 2017;12:e0183384.
    PubMed     Abstract available


  1463. MERKLEY ED, Sego LH, Lin A, Leiser OP, et al
    Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.
    PLoS One. 2017;12:e0183478.
    PubMed     Abstract available


  1464. YWASAKI LIMA J, Machado FB, Farro APC, Barbosa LA, et al
    Population genetic structure of Guiana dolphin (Sotalia guianensis) from the southwestern Atlantic coast of Brazil.
    PLoS One. 2017;12:e0183645.
    PubMed     Abstract available


  1465. MARKUS B, Szabo K, Pfliegler WP, Petrenyi K, et al
    Proteomic analysis of protein phosphatase Z1 from Candida albicans.
    PLoS One. 2017;12:e0183176.
    PubMed     Abstract available


  1466. CANTRES-ROSARIO YM, Acevedo-Mariani FM, Perez-Laspiur J, Haskins WE, et al
    Microwave & magnetic proteomics of macrophages from patients with HIV-associated cognitive impairment.
    PLoS One. 2017;12:e0181779.
    PubMed     Abstract available


  1467. BARBIERI R, Mekni R, Levasseur A, Chabriere E, et al
    Paleoproteomics of the Dental Pulp: The plague paradigm.
    PLoS One. 2017;12:e0180552.
    PubMed     Abstract available


  1468. MANTOOTH K, Hadziabdic D, Boggess S, Windham M, et al
    Confirmation of independent introductions of an exotic plant pathogen of Cornus species, Discula destructiva, on the east and west coasts of North America.
    PLoS One. 2017;12:e0180345.
    PubMed     Abstract available


  1469. CHEN Q, Pei D, Li J, Jing C, et al
    The antenna transcriptome changes in mosquito Anopheles sinensis, pre- and post- blood meal.
    PLoS One. 2017;12:e0181399.
    PubMed     Abstract available


  1470. HIRAI J, Nagai S, Hidaka K
    Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454.
    PLoS One. 2017;12:e0181452.
    PubMed     Abstract available


  1471. GAO L, He C, Bao X, Tian M, et al
    Transcriptome analysis of the sea cucumber (Apostichopus japonicus) with variation in individual growth.
    PLoS One. 2017;12:e0181471.
    PubMed     Abstract available


  1472. CHATURVEDI S, Rao ALN
    Riboproteomics: A versatile approach for the identification of host protein interaction network in plant pathogenic noncoding RNAs.
    PLoS One. 2017;12:e0186703.
    PubMed     Abstract available


  1473. THEOFANOPOULOU C, Gastaldon S, O'Rourke T, Samuels BD, et al
    Self-domestication in Homo sapiens: Insights from comparative genomics.
    PLoS One. 2017;12:e0185306.
    PubMed     Abstract available


  1474. MAQUEDA M, Roca E, Brotons D, Soria JM, et al
    Affected pathways and transcriptional regulators in gene expression response to an ultra-marathon trail: Global and independent activity approaches.
    PLoS One. 2017;12:e0180322.
    PubMed     Abstract available


  1475. PEREZ-ZAMORANO B, Rosas-Madrigal S, Lozano OAM, Castillo Mendez M, et al
    Identification of cis-regulatory sequences reveals potential participation of lola and Deaf1 transcription factors in Anopheles gambiae innate immune response.
    PLoS One. 2017;12:e0186435.
    PubMed     Abstract available


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    Diversity and microevolution of CRISPR loci in Helicobacter cinaedi.
    PLoS One. 2017;12:e0186241.
    PubMed     Abstract available


  1477. BORTHS MR, Stevens NJ
    The first hyaenodont from the late Oligocene Nsungwe Formation of Tanzania: Paleoecological insights into the Paleogene-Neogene carnivore transition.
    PLoS One. 2017;12:e0185301.
    PubMed     Abstract available


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    Secretome analysis of Trypanosoma cruzi by proteomics studies.
    PLoS One. 2017;12:e0185504.
    PubMed     Abstract available


  1479. KHOSHNOOD B, Dacklin I, Grabbe C
    A proteomics approach to identify targets of the ubiquitin-like molecule Urm1 in Drosophila melanogaster.
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    PubMed     Abstract available


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    Population genetics, community of parasites, and resistance to rodenticides in an urban brown rat (Rattus norvegicus) population.
    PLoS One. 2017;12:e0184015.
    PubMed     Abstract available


  1481. TIMOFEEV V, Bakhteeva I, Titareva G, Kopylov P, et al
    Russian isolates enlarge the known geographic diversity of Francisella tularensis subsp. mediasiatica.
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    PubMed     Abstract available


  1482. HAGGLUND S, Blodorn K, Naslund K, Vargmar K, et al
    Proteome analysis of bronchoalveolar lavage from calves infected with bovine respiratory syncytial virus-Insights in pathogenesis and perspectives for new treatments.
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    PubMed     Abstract available


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    EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments.
    PLoS One. 2017;12:e0187287.
    PubMed     Abstract available


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    iTRAQ-based quantitative proteomic analysis in vernalization-treated faba bean (Vicia faba L.).
    PLoS One. 2017;12:e0187436.
    PubMed     Abstract available


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    Proteome profiling in the aorta and kidney of type 1 diabetic rats.
    PLoS One. 2017;12:e0187752.
    PubMed     Abstract available


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    Proteomic analysis reveals novel ligands and substrates for LNX1 E3 ubiquitin ligase.
    PLoS One. 2017;12:e0187352.
    PubMed     Abstract available


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    Genomic sequencing identifies a few mutations driving the independent origin of primary liver tumors in a chronic hepatitis murine model.
    PLoS One. 2017;12:e0187551.
    PubMed     Abstract available


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    Genetic health and population monitoring of two small black bear (Ursus americanus) populations in Alabama, with a regional perspective of genetic diversity and exchange.
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    PubMed     Abstract available


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    Virome analysis of two sympatric bat species (Desmodus rotundus and Molossus molossus) in French Guiana.
    PLoS One. 2017;12:e0186943.
    PubMed     Abstract available


  1490. WAN TW, Higuchi W, Khokhlova OE, Hung WC, et al
    Genomic comparison between Staphylococcus aureus GN strains clinically isolated from a familial infection case: IS1272 transposition through a novel inverted repeat-replacing mechanism.
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    PubMed     Abstract available


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    Phylogeographic structure of the Common hamster (Cricetus cricetus L.): Late Pleistocene connections between Caucasus and Western European populations.
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    PubMed     Abstract available


  1492. PEREZ-PARRA S, Chueca N, Alvarez M, Pasquau J, et al
    High prevalence and diversity of HIV-1 non-B genetic forms due to immigration in southern Spain: A phylogeographic approach.
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    Phylogeography and genetic effects of habitat fragmentation on endemic Urophysa (Ranunculaceae) in Yungui Plateau and adjacent regions.
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    Barcoding the butterflies of southern South America: Species delimitation efficacy, cryptic diversity and geographic patterns of divergence.
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    Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data.
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    Knowledge-based prediction of protein backbone conformation using a structural alphabet.
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    Intraspecific evolutionary relationships among peregrine falcons in western North American high latitudes.
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    Wnt co-receptors Lrp5 and Lrp6 differentially mediate Wnt3a signaling in osteoblasts.
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  1500. WALLQVIST A, Wang H, Zavaljevski N, Memisevic V, et al
    Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions.
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  1501. SALDARRIAGA-CORDOBA M, Parkinson CL, Daza JM, Wuster W, et al
    Phylogeography of the Central American lancehead Bothrops asper (SERPENTES: VIPERIDAE).
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  1502. TAI PWL, Wu H, van Wijnen AJ, Stein GS, et al
    Genome-wide DNase hypersensitivity, and occupancy of RUNX2 and CTCF reveal a highly dynamic gene regulome during MC3T3 pre-osteoblast differentiation.
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  1503. AGREN J, Schafer MO, Forsgren E
    Using whole genome sequencing to study American foulbrood epidemiology in honeybees.
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