: The AMEDEO Literature Guide

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Articles published in PLoS One
Retrieve available abstracts of 1078 articles:
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Single Articles

January 2022

ARANA C, Liang C, Brock M, Zhang B, et al
A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome.
PLoS One. 2022;17:e0261014.
PubMed Abstract available

HUANG K, Wang C, Vagts C, Raguveer V, et al
Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single-cell analysis.
PLoS One. 2022;17:e0261242.
PubMed Abstract available

MIRANDA GHN, Alencar de Oliveira Lima L, Bittencourt LO, Dos Santos SM, et al
Effects of long-term fluoride exposure are associated with oxidative biochemistry impairment and global proteomic modulation, but not genotoxicity, in parotid glands of mice.
PLoS One. 2022;17:e0261252.
PubMed Abstract available

DILMAGHANI S, Brust MR, Ribeiro CHC, Kieffer E, et al
From communities to protein complexes: A local community detection algorithm on PPI networks.
PLoS One. 2022;17:e0260484.
PubMed Abstract available

PIERRE N, Wamalwa LN, Muiru WM, Simon B, et al
Genetic diversity of local and introduced cassava germplasm in Burundi using DArTseq molecular analyses.
PLoS One. 2022;17:e0256002.
PubMed Abstract available

HAMMOND J, Klapwijk JE, Riedijk S, Lou S, et al
Assessing women's preferences towards tests that may reveal uncertain results from prenatal genomic testing: Development of attributes for a discrete choice experiment, using a mixed-methods design.
PLoS One. 2022;17:e0261898.
PubMed Abstract available

IGATA T, Tanaka H, Etoh K, Hong S, et al
Loss of the transcription repressor ZHX3 induces senescence-associated gene expression and mitochondrial-nucleolar activation.
PLoS One. 2022;17:e0262488.
PubMed Abstract available

COELHO DE SOUSA I, Nascimento M, de Castro Sant'anna I, Teixeira Caixeta E, et al
Marker effects and heritability estimates using additive-dominance genomic architectures via artificial neural networks in Coffea canephora.
PLoS One. 2022;17:e0262055.
PubMed Abstract available

EL MOUZAN M, Assiri A, Al Sarkhy A, Alasmi M, et al
Viral dysbiosis in children with new-onset celiac disease.
PLoS One. 2022;17:e0262108.
PubMed Abstract available

ELBEHIRY A, Aldubaib M, Al Rugaie O, Marzouk E, et al
Proteomics-based screening and antibiotic resistance assessment of clinical and sub-clinical Brucella species: An evolution of brucellosis infection control.
PLoS One. 2022;17:e0262551.
PubMed Abstract available

KAPINOS A, Aghamalian P, Capehart E, Alag A, et al
Novel Cluster AZ Arthrobacter phages Powerpuff, Lego, and YesChef exhibit close functional relationships with Microbacterium phages.
PLoS One. 2022;17:e0262556.
PubMed Abstract available

BENNETT NE, Mirabal Torres SE, Gray PB
Exploratory content analysis of direct-to-consumer pet genomics: What is being marketed and what are consumers saying?
PLoS One. 2022;17:e0261694.
PubMed Abstract available

KIM SS, Kycia I, Karski M, Ma RK, et al
DNAJB1-PRKACA in HEK293T cells induces LINC00473 overexpression that depends on PKA signaling.
PLoS One. 2022;17:e0263829.
PubMed Abstract available

PADMANABHAN H, Hassan NT, Wong SW, Lee YQ, et al
Psychosocial outcome and health behaviour intent of breast cancer patients with BRCA1/2 and PALB2 pathogenic variants unselected by a priori risk.
PLoS One. 2022;17:e0263675.
PubMed Abstract available

CONTE F, Sibilio P, Grimaldi AM, Salvatore M, et al
In silico recognition of a prognostic signature in basal-like breast cancer patients.
PLoS One. 2022;17:e0264024.
PubMed Abstract available

KARADZOVSKA-KOTEVSKA M, Brunnstrom H, Kosieradzki J, Ek L, et al
Feasibility of EBUS-TBNA for histopathological and molecular diagnostics of NSCLC-A retrospective single-center experience.
PLoS One. 2022;17:e0263342.
PubMed Abstract available

BORBA RS, Hoover SE, Currie RW, Giovenazzo P, et al
Phenomic analysis of the honey bee pathogen-web and its dynamics on colony productivity, health and social immunity behaviors.
PLoS One. 2022;17:e0263273.
PubMed Abstract available

WARD SJ, McMahan CD, Khakurel B, Wright AM, et al
Genomic data support the taxonomic validity of Middle American livebearers Poeciliopsis gracilis and Poeciliopsis pleurospilus (Cyprinodontiformes: Poeciliidae).
PLoS One. 2022;17:e0262687.
PubMed Abstract available

VANDENBON A
Evaluation of critical data processing steps for reliable prediction of gene co-expression from large collections of RNA-seq data.
PLoS One. 2022;17:e0263344.
PubMed Abstract available

GOLJAN E, Abouelhoda M, ElKalioby MM, Jabaan A, et al
Identification of pharmacogenetic variants from large scale next generation sequencing data in the Saudi population.
PLoS One. 2022;17:e0263137.
PubMed Abstract available

SHAHDADI A, von Wyschetzki K, Liu HC, Chu KH, et al
Molecular phylogeography reveals multiple Pleistocene divergence events in estuarine crabs from the tropical West Pacific.
PLoS One. 2022;17:e0262122.
PubMed Abstract available

PECANKOVA K, Pecherkova P, Gasova Z, Sovova Z, et al
Proteome changes of plasma-derived extracellular vesicles in patients with myelodysplastic syndrome.
PLoS One. 2022;17:e0262484.
PubMed Abstract available

MILLER JK, Elenberg K, Dubrawski A
Forecasting emergence of COVID-19 variants of concern.
PLoS One. 2022;17:e0264198.
PubMed Abstract available

WANKAEW N, Chariyavilaskul P, Chamnanphon M, Assawapitaksakul A, et al
Genotypic and phenotypic landscapes of 51 pharmacogenes derived from whole-genome sequencing in a Thai population.
PLoS One. 2022;17:e0263621.
PubMed Abstract available

CAIRO A, Iorio MV, Spena S, Tagliabue E, et al
Worldwide SARS-CoV-2 haplotype distribution in early pandemic.
PLoS One. 2022;17:e0263705.
PubMed Abstract available

BISCHOF EA, Schluter N, Lehmann J
Geometric morphometric analysis of morphologic disparity, intraspecific variation and ontogenetic allometry of beyrichitine ammonoids.
PLoS One. 2022;17:e0263524.
PubMed Abstract available

JESKE M, Vasquez E, Fullerton SM, Saperstein A, et al
Beyond inclusion: Enacting team equity in precision medicine research.
PLoS One. 2022;17:e0263750.
PubMed Abstract available

HONG S, Park KH, Lee YE, Lee JE, et al
Antibody microarray analysis of amniotic fluid proteomes in women with cervical insufficiency and short cervix, and their association with pregnancy latency length.
PLoS One. 2022;17:e0263586.
PubMed Abstract available

WU Y, Zhu Y, Xie N, Wang H, et al
A network pharmacology approach to explore active compounds and pharmacological mechanisms of a patented Chinese herbal medicine in the treatment of endometriosis.
PLoS One. 2022;17:e0263614.
PubMed Abstract available

CONRAD MS, Gardner ML, Miguel C, Freitas MA, et al
Proteomic analysis of the umbilical cord in fetal growth restriction and preeclampsia.
PLoS One. 2022;17:e0262041.
PubMed Abstract available

GARDINER LJ, Carrieri AP, Bingham K, Macluskie G, et al
Combining explainable machine learning, demographic and multi-omic data to inform precision medicine strategies for inflammatory bowel disease.
PLoS One. 2022;17:e0263248.
PubMed Abstract available

HARTMANN K, Seweryn M, Sadee W
Interpreting coronary artery disease GWAS results: A functional genomics approach assessing biological significance.
PLoS One. 2022;17:e0244904.
PubMed Abstract available

CHEN Y, Kaplan Lease N, Gin JW, Ogorzalek TL, et al
Modular automated bottom-up proteomic sample preparation for high-throughput applications.
PLoS One. 2022;17:e0264467.
PubMed Abstract available

PIE MR, Caron FS
Geographical range overlap networks and the macroecology of species co-occurrence.
PLoS One. 2022;17:e0266275.
PubMed Abstract available

LI J, Xu H, McIndoe RA
A novel network based linear model for prioritization of synergistic drug combinations.
PLoS One. 2022;17:e0266382.
PubMed Abstract available

PFENNINGER M, Doria HB, Nickel J, Thielsch A, et al
Spontaneous rate of clonal single nucleotide mutations in Daphnia galeata.
PLoS One. 2022;17:e0265632.
PubMed Abstract available

WEISS L, Gaelings L, Reiner T, Mergner J, et al
Posttranslational modification of the RHO of plants protein RACB by phosphorylation and cross-kingdom conserved ubiquitination.
PLoS One. 2022;17:e0258924.
PubMed Abstract available

SHU J, Ma X, Ma H, Huang Q, et al
Transcriptomic, proteomic, metabolomic, and functional genomic approaches of Brassica napus L. during salt stress.
PLoS One. 2022;17:e0262587.
PubMed Abstract available

SUNDERHAUS A, Imran R, Enoh E, Adedeji A, et al
Comparative expression of soluble, active human kinases in specialized bacterial strains.
PLoS One. 2022;17:e0267226.
PubMed Abstract available

AKBARI ROKN ABADI S, Mohammadi A, Koohi S
WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs.
PLoS One. 2022;17:e0267106.
PubMed Abstract available

LYALINA S, Stepanauskas R, Wu F, Sanjabi S, et al
Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community.
PLoS One. 2022;17:e0261795.
PubMed Abstract available

MUSHTAQ S, Shafiq M, Ashraf T, Haider MS, et al
Enumeration of citrus endophytic bacterial communities based on illumine metagenomics technique.
PLoS One. 2022;17:e0263144.
PubMed Abstract available

MILBURY CA, Creeden J, Yip WK, Smith DL, et al
Clinical and analytical validation of FoundationOne(R)CDx, a comprehensive genomic profiling assay for solid tumors.
PLoS One. 2022;17:e0264138.
PubMed Abstract available

CASSELBRANT A, Fedorowski A, Frantz S, Engstrom G, et al
Common physiologic and proteomic biomarkers in pulmonary and coronary artery disease.
PLoS One. 2022;17:e0264376.
PubMed Abstract available

MORADI S, Kamal A, Aboulkheyr Es H, Farhadi F, et al
Pan-cancer analysis of microRNA expression profiles highlights microRNAs enriched in normal body cells as effective suppressors of multiple tumor types: A study based on TCGA database.
PLoS One. 2022;17:e0267291.
PubMed Abstract available

DUTTMANN C, Flores B, Sheleby-Elias J, Castillo G, et al
Africanized honeybee population (Apis mellifera L.) in Nicaragua: Forewing length and mitotype lineages.
PLoS One. 2022;17:e0267600.
PubMed Abstract available

LIPMAN D, Safo SE, Chekouo T
Multi-omic analysis reveals enriched pathways associated with COVID-19 and COVID-19 severity.
PLoS One. 2022;17:e0267047.
PubMed Abstract available

NOURANI L, Abouie Mehrizi A, Zakeri S, Djadid ND, et al
Untangling population structure and genetic diversity of reticulocyte binding protein 2b (PvRBP2b) erythrocytic stage vaccine candidate in worldwide Plasmodium vivax isolates.
PLoS One. 2022;17:e0266067.
PubMed Abstract available

CAPPA EP, Klutsch JG, Sebastian-Azcona J, Ratcliffe B, et al
Integrating genomic information and productivity and climate-adaptability traits into a regional white spruce breeding program.
PLoS One. 2022;17:e0264549.
PubMed Abstract available

ZHOU Z, Tang J, Cao Q, Li Z, et al
Differential response of physiology and metabolic response to drought stress in different sweetpotato cultivars.
PLoS One. 2022;17:e0264847.
PubMed Abstract available

MUKHOPADHYAY S, Saha S, Chakraborty S, Prasad P, et al
Differential colitis susceptibility of Th1- and Th2-biased mice: A multi-omics approach.
PLoS One. 2022;17:e0264400.
PubMed Abstract available

MAGHRADZE N, Jugheli L, Borrell S, Tukvadze N, et al
Developing customized stepwise MIRU-VNTR typing for tuberculosis surveillance in Georgia.
PLoS One. 2022;17:e0264472.
PubMed Abstract available

LI S, Counter CM
Non-canonical genomic driver mutations of urethane carcinogenesis.
PLoS One. 2022;17:e0267147.
PubMed Abstract available

DIEYE Y, Hull DM, Wane AA, Harden L, et al
Genomics of human and chicken Salmonella isolates in Senegal: Broilers as a source of antimicrobial resistance and potentially invasive nontyphoidal salmonellosis infections.
PLoS One. 2022;17:e0266025.
PubMed Abstract available

ANTHONYSAMY WJB, Dreslik MJ, Baker SJ, Davis MA, et al
Limited gene flow and pronounced population genetic structure of Eastern Massasauga (Sistrurus catenatus) in a Midwestern prairie remnant.
PLoS One. 2022;17:e0265666.
PubMed Abstract available

YASUDA T, Tahara K, Sawada T
Detection of salivary citrullinated cytokeratin 13 in healthy individuals and patients with rheumatoid arthritis by proteomics analysis.
PLoS One. 2022;17:e0265687.
PubMed Abstract available

DIEKI R, Nsi Emvo E, Akue JP
Comparison of six methods for Loa loa genomic DNA extraction.
PLoS One. 2022;17:e0265582.
PubMed Abstract available

GUO YH, Halasan LC, Wang HY, Lin HC, et al
High migratory propensity constitutes a single stock of an exploited cutlassfish species in the Northwest Pacific: A microsatellite approach.
PLoS One. 2022;17:e0265548.
PubMed Abstract available

DAVIK J, Roen D, Lysoe E, Buti M, et al
A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.).
PLoS One. 2022;17:e0265096.
PubMed Abstract available

JI G, Chang H, Yang M, Chen H, et al
The mitochondrial proteomic changes of rat hippocampus induced by 28-day simulated microgravity.
PLoS One. 2022;17:e0265108.
PubMed Abstract available

HARFORD TJ, Rezaee F, Dye BR, Fan J, et al
RSV-induced changes in a 3-dimensional organoid model of human fetal lungs.
PLoS One. 2022;17:e0265094.
PubMed Abstract available

CARLAND M, Pedersen H, Bose M, Novkovic B, et al
EZTraits: A programmable tool to evaluate multi-site deterministic traits.
PLoS One. 2022;17:e0259327.
PubMed Abstract available

KHAN MN, Ahmed I, Ud Din I, Noureldeen A, et al
Proteomic insight into soybean response to flooding stress reveals changes in energy metabolism and cell wall modifications.
PLoS One. 2022;17:e0264453.
PubMed Abstract available

LOVE TM, Anaya DA, Prime MS, Ardolino L, et al
Development and validation of ACTE-MTB: A tool to systematically assess the maturity of molecular tumor boards.
PLoS One. 2022;17:e0268477.
PubMed Abstract available

HOLM M, Saraswat M, Joenvaara S, Seppo A, et al
Quantitative glycoproteomics of human milk and association with atopic disease.
PLoS One. 2022;17:e0267967.
PubMed Abstract available

DELIHAS N
An ancestral genomic sequence that serves as a nucleation site for de novo gene birth.
PLoS One. 2022;17:e0267864.
PubMed Abstract available

VOLYNKINA A, Lisitskaya Y, Kolosov A, Shaposhnikova L, et al
Molecular epidemiology of Crimean-Congo hemorrhagic fever virus in Russia.
PLoS One. 2022;17:e0266177.
PubMed Abstract available

VENTRESCA MILLER AR, Wilkin S, Hendy J, Turbat T, et al
The spread of herds and horses into the Altai: How livestock and dairying drove social complexity in Mongolia.
PLoS One. 2022;17:e0265775.
PubMed Abstract available

LANG J
MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction.
PLoS One. 2022;17:e0267066.
PubMed Abstract available

GENISH I, Gabay B, Ruban A, Goldshmit Y, et al
Electroporation-based proteome sampling ex vivo enables the detection of brain melanoma protein signatures in a location proximate to visible tumor margins.
PLoS One. 2022;17:e0265866.
PubMed Abstract available

ARORA D, Park JE, Lim D, Cho IC, et al
Multi-omics approaches for comprehensive analysis and understanding of the immune response in the miniature pig breed.
PLoS One. 2022;17:e0263035.
PubMed Abstract available

COLLER HA, Beggs S, Andrews S, Maloy J, et al
Bruins-in-Genomics: Evaluation of the impact of a UCLA undergraduate summer program in computational biology on participating students.
PLoS One. 2022;17:e0268861.
PubMed Abstract available

PAUDEL D, Kuramitsu Y, Uehara O, Morikawa T, et al
Proteomic and microbiota analyses of the oral cavity during psychological stress.
PLoS One. 2022;17:e0268155.
PubMed Abstract available

HUANG RDL, Nguyen XT, Peloso GM, Trinder M, et al
Genome-wide and phenome-wide analysis of ideal cardiovascular health in the VA Million Veteran Program.
PLoS One. 2022;17:e0267900.
PubMed Abstract available

ANDREEV VP, Helmuth ME, Liu G, Smith AR, et al
Subtyping of common complex diseases and disorders by integrating heterogeneous data. Identifying clusters among women with lower urinary tract symptoms in the LURN study.
PLoS One. 2022;17:e0268547.
PubMed Abstract available

BLAGEC K, Swen JJ, Koopmann R, Cheung KC, et al
Pharmacogenomics decision support in the U-PGx project: Results and advice from clinical implementation across seven European countries.
PLoS One. 2022;17:e0268534.
PubMed Abstract available

AUTERI GG, Marchan-Rivadeneira MR, Olson DH, Knowles LL, et al
Landscape connectivity among coastal giant salamander (Dicamptodon tenebrosus) populations shows no association with land use, fire frequency, or river drainage but exhibits genetic signatures of potential conservation concern.
PLoS One. 2022;17:e0268882.
PubMed Abstract available

FROMMLET F, Szulc P, Konig F, Bogdan M, et al
Selecting predictive biomarkers from genomic data.
PLoS One. 2022;17:e0269369.
PubMed Abstract available

MARBUN VMG, Erlina L, Lalisang TJM
Genomic landscape of pathogenic mutation of APC, KRAS, TP53, PIK3CA, and MLH1 in Indonesian colorectal cancer.
PLoS One. 2022;17:e0267090.
PubMed Abstract available

ZHANG X, Takeuchi T, Takeda A, Mochizuki H, et al
Comparison of serum and plasma as a source of blood extracellular vesicles: Increased levels of platelet-derived particles in serum extracellular vesicle fractions alter content profiles from plasma extracellular vesicle fractions.
PLoS One. 2022;17:e0270634.
PubMed Abstract available

January 2021

BHOYAR RC, Jain A, Sehgal P, Divakar MK, et al
High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing.
PLoS One. 2021;16:e0247115.
PubMed Abstract available

DADOUSIS C, Cecchi F, Ablondi M, Fabbri MC, et al
Keep Garfagnina alive. An integrated study on patterns of homozygosity, genomic inbreeding, admixture and breed traceability of the Italian Garfagnina goat breed.
PLoS One. 2021;16:e0232436.
PubMed Abstract available

ZHANG ML, Wang LQ, Qi Y, Wu Y, et al
Comparative genomic analysis of three geographical isolates from China reveals high genetic stability of Plutella xylostella granulovirus.
PLoS One. 2021;16:e0243143.
PubMed Abstract available

HAN M, Yan H, Yang K, Fan B, et al
Identification of biomarkers and construction of a microRNAmRNA regulatory network for clear cell renal cell carcinoma using integrated bioinformatics analysis.
PLoS One. 2021;16:e0244394.
PubMed Abstract available

MI W, Liu Z, Jin J, Dong X, et al
Comparative proteomics analysis reveals the molecular mechanism of enhanced cold tolerance through ROS scavenging in winter rapeseed (Brassica napus L.).
PLoS One. 2021;16:e0243292.
PubMed Abstract available

EPELBOIN Y, Wang L, Giai Gianetto Q, Choumet V, et al
CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana highlighted by proteomics, molecular and biochemical studies.
PLoS One. 2021;16:e0243992.
PubMed Abstract available

MAROSO F, Gkagkavouzis K, De Innocentiis S, Hillen J, et al
Genome-wide analysis clarifies the population genetic structure of wild gilthead sea bream (Sparus aurata).
PLoS One. 2021;16:e0236230.
PubMed Abstract available

TAMAR K, Els J, Kornilios P, Soorae P, et al
The demise of a wonder: Evolutionary history and conservation assessments of the Wonder Gecko Teratoscincus keyserlingii (Gekkota, Sphaerodactylidae) in Arabia.
PLoS One. 2021;16:e0244150.
PubMed Abstract available

MORIBE F, Nishikori M, Takashima T, Taniyama D, et al
Epigenetic suppression of SLFN11 in germinal center B-cells during B-cell development.
PLoS One. 2021;16:e0237554.
PubMed Abstract available

SCIABOLA S, Xi H, Cruz D, Cao Q, et al
PFRED: A computational platform for siRNA and antisense oligonucleotides design.
PLoS One. 2021;16:e0238753.
PubMed Abstract available

GUEVARRA RB, Magez S, Peeters E, Chung MS, et al
Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen.
PLoS One. 2021;16:e0239792.
PubMed Abstract available

EGFJORD AF, Margaryan A, Fischer A, Sjogren KG, et al
Genomic Steppe ancestry in skeletons from the Neolithic Single Grave Culture in Denmark.
PLoS One. 2021;16:e0244872.
PubMed Abstract available

MACHER JN, Prazeres M, Taudien S, Jompa J, et al
Integrating morphology and metagenomics to understand taxonomic variability of Amphisorus (Foraminifera, Miliolida) from Western Australia and Indonesia.
PLoS One. 2021;16:e0244616.
PubMed Abstract available

COELHO AC, Pires R, Schutz G, Santa C, et al
Disclosing proteins in the leaves of cork oak plants associated with the immune response to Phytophthora cinnamomi inoculation in the roots: A long-term proteomics approach.
PLoS One. 2021;16:e0245148.
PubMed Abstract available

SOUTO BM, de Araujo ACB, Hamann PRV, Bastos AR, et al
Functional screening of a Caatinga goat (Capra hircus) rumen metagenomic library reveals a novel GH3 beta-xylosidase.
PLoS One. 2021;16:e0245118.
PubMed Abstract available

MAGUIRE M, Kase JA, Roberson D, Muruvanda T, et al
Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water.
PLoS One. 2021;16:e0245172.
PubMed Abstract available

ELMASSRY MM, Kim S, Busby B
Predicting drug-metagenome interactions: Variation in the microbial beta-glucuronidase level in the human gut metagenomes.
PLoS One. 2021;16:e0244876.
PubMed Abstract available

MUTURI SM, Muthui LW, Njogu PM, Onguso JM, et al
Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya.
PLoS One. 2021;16:e0244755.
PubMed Abstract available

MADDUPPA H, Martaulina R, Zairion Z, Renjani RM, et al
Genetic population subdivision of the blue swimming crab (Portunus pelagicus) across Indonesia inferred from mitochondrial DNA: Implication to sustainable fishery.
PLoS One. 2021;16:e0240951.
PubMed Abstract available

FAZZI-GOMES P, Aguiar J, Cabral GF, Marques D, et al
Genomic approach for conservation and the sustainable management of endangered species of the Amazon.
PLoS One. 2021;16:e0240002.
PubMed Abstract available

BARRETT DE, Bartholomew JL
A tale of two fish: Comparative transcriptomics of resistant and susceptible steelhead following exposure to Ceratonova shasta highlights differences in parasite recognition.
PLoS One. 2021;16:e0234837.
PubMed Abstract available

HARDMEIER I, Aeberhard N, Qi W, Schoenbaechler K, et al
Metagenomic analysis of fecal and tissue samples from 18 endemic bat species in Switzerland revealed a diverse virus composition including potentially zoonotic viruses.
PLoS One. 2021;16:e0252534.
PubMed Abstract available

SEYYEDSALEHI SF, Soleymani M, Rabiee HR, Mofrad MRK, et al
PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks.
PLoS One. 2021;16:e0244430.
PubMed Abstract available

RICHTER J, Fanis P, Tryfonos C, Koptides D, et al
Molecular epidemiology of SARS-CoV-2 in Cyprus.
PLoS One. 2021;16:e0248792.
PubMed Abstract available

LI Q, Yu X, Chen L, Zhao G, et al
Genome-wide identification and expression analysis of the NCED family in cotton (Gossypium hirsutum L.).
PLoS One. 2021;16:e0246021.
PubMed Abstract available

MENDOZA N, Rivas E, Rodriguez-Roisin R, Garcia T, et al
Liver epigenome changes in patients with hepatopulmonary syndrome: A pilot study.
PLoS One. 2021;16:e0245046.
PubMed Abstract available

HEWITSON L, Mathews JA, Devlin M, Schutte C, et al
Blood biomarker discovery for autism spectrum disorder: A proteomic analysis.
PLoS One. 2021;16:e0246581.
PubMed Abstract available

CAI L, Wu H, Zhou K
Improved cancer biomarkers identification using network-constrained infinite latent feature selection.
PLoS One. 2021;16:e0246668.
PubMed Abstract available

LIAO TY, Lu PL, Yu YH, Huang WC, et al
Amphidromous but endemic: Population connectivity of Rhinogobius gigas (Teleostei: Gobioidei).
PLoS One. 2021;16:e0246406.
PubMed Abstract available

DE AK, Sawhney S, Bhattacharya D, Sujatha T, et al
Origin, genetic diversity and evolution of Andaman local duck, a native duck germplasm of an insular region of India.
PLoS One. 2021;16:e0245138.
PubMed Abstract available

LEE N, Kim SM, Lee Y, Jeong D, et al
Prognostic value of integrated cytogenetic, somatic variation, and copy number variation analyses in Korean patients with newly diagnosed multiple myeloma.
PLoS One. 2021;16:e0246322.
PubMed Abstract available

SCHWABER JL, Korbie D, Andersen S, Lin E, et al
Network mapping of primary CD34+ cells by Ampliseq based whole transcriptome targeted resequencing identifies unexplored differentiation regulatory relationships.
PLoS One. 2021;16:e0246107.
PubMed Abstract available

FUKUYAMA K, Asagiri M, Sugimoto M, Tsushima H, et al
Gene expression profiles of liver cancer cell lines reveal two hepatocyte-like and fibroblast-like clusters.
PLoS One. 2021;16:e0245939.
PubMed Abstract available

HAN J, Guo T, Yue Y, Lu Z, et al
Quantitative proteomic analysis identified differentially expressed proteins with tail/rump fat deposition in Chinese thin- and fat-tailed lambs.
PLoS One. 2021;16:e0246279.
PubMed Abstract available

BONIS M, Felten A, Pairaud S, Dijoux A, et al
Comparative phenotypic, genotypic and genomic analyses of Bacillus thuringiensis associated with foodborne outbreaks in France.
PLoS One. 2021;16:e0246885.
PubMed Abstract available

VALLI AT, Koumandou VL, Iatrou G, Andreou M, et al
Conservation biology of threatened Mediterranean chasmophytes: The case of Asperula naufraga endemic to Zakynthos island (Ionian islands, Greece).
PLoS One. 2021;16:e0246706.
PubMed Abstract available

PRASAD K, AlOmar SY, Almuqri EA, Rudayni HA, et al
Genomics-guided identification of potential modulators of SARS-CoV-2 entry proteases, TMPRSS2 and Cathepsins B/L.
PLoS One. 2021;16:e0256141.
PubMed Abstract available

JANSEN GJ, Wiersma M, van Wamel WJB, Wijnberg ID, et al
Direct detection of SARS-CoV-2 antisense and sense genomic RNA in human saliva by semi-autonomous fluorescence in situ hybridization: A proxy for contagiousness?
PLoS One. 2021;16:e0256378.
PubMed Abstract available

LITTERA R, Chessa L, Deidda S, Angioni G, et al
Natural killer-cell immunoglobulin-like receptors trigger differences in immune response to SARS-CoV-2 infection.
PLoS One. 2021;16:e0255608.
PubMed Abstract available

RANA T, Korolkova OY, Rachakonda G, Williams AD, et al
Linking bacterial enterotoxins and alpha defensin 5 expansion in the Crohn's colitis: A new insight into the etiopathogenetic and differentiation triggers driving colonic inflammatory bowel disease.
PLoS One. 2021;16:e0246393.
PubMed Abstract available

OLSEN KS, Holden M, Thalabard JC, Rasmussen Busund LT, et al
Global blood gene expression profiles following a breast cancer diagnosis-Clinical follow-up in the NOWAC post-genome cohort.
PLoS One. 2021;16:e0246650.
PubMed Abstract available

GONCALVES MTV, Morota G, Costa PMA, Vidigal PMP, et al
Near-infrared spectroscopy outperforms genomics for predicting sugarcane feedstock quality traits.
PLoS One. 2021;16:e0236853.
PubMed Abstract available

SOTO-AVILA L, Merce RC, Santos W, Castaneda N, et al
Distribution and preservation of the components of the engulfment. What is beyond representative genomes?
PLoS One. 2021;16:e0246651.
PubMed Abstract available

YANG B, Liu X
Application of proteomics to understand the molecular mechanisms determining meat quality of beef muscles during postmortem aging.
PLoS One. 2021;16:e0246955.
PubMed Abstract available

JIANG Z, Shi Y, Tan G, Wang Z, et al
Computational screening of potential glioma-related genes and drugs based on analysis of GEO dataset and text mining.
PLoS One. 2021;16:e0247612.
PubMed Abstract available

ANDRADE JUSTI S, Soghigian J, Pecor DB, Caicedo-Quiroga L, et al
From e-voucher to genomic data: Preserving archive specimens as demonstrated with medically important mosquitoes (Diptera: Culicidae) and kissing bugs (Hemiptera: Reduviidae).
PLoS One. 2021;16:e0247068.
PubMed Abstract available

SANDOVAL RL, Leite ACR, Barbalho DM, Assad DX, et al
Germline molecular data in hereditary breast cancer in Brazil: Lessons from a large single-center analysis.
PLoS One. 2021;16:e0247363.
PubMed Abstract available

SUHANDYNATA RT, Gao YQ, Zhou AL, Yang Y, et al
Shared and distinct roles of Esc2 and Mms21 in suppressing genome rearrangements and regulating intracellular sumoylation.
PLoS One. 2021;16:e0247132.
PubMed Abstract available

MEHRAJ H, Shea DJ, Takahashi S, Miyaji N, et al
Genome-wide analysis of long noncoding RNAs, 24-nt siRNAs, DNA methylation and H3K27me3 marks in Brassica rapa.
PLoS One. 2021;16:e0242530.
PubMed Abstract available

GEIBEL J, Reimer C, Weigend S, Weigend A, et al
How array design creates SNP ascertainment bias.
PLoS One. 2021;16:e0245178.
PubMed Abstract available

SILVER A, Perez S, Gee M, Xu B, et al
Persistence of the ground beetle (Coleoptera: Carabidae) microbiome to diet manipulation.
PLoS One. 2021;16:e0241529.
PubMed Abstract available

JI Z, Tinti M, Ferguson MAJ
Proteomic identification of the UDP-GlcNAc: PI alpha1-6 GlcNAc-transferase subunits of the glycosylphosphatidylinositol biosynthetic pathway of Trypanosoma brucei.
PLoS One. 2021;16:e0244699.
PubMed Abstract available

MCINTOSH AT, Wei R, Ahn J, Aouizerat BE, et al
A genomic variant of ALPK2 is associated with increased liver fibrosis risk in HIV/HCV coinfected women.
PLoS One. 2021;16:e0247277.
PubMed Abstract available

LI P, Chen C, Li P, Dong Y, et al
A comprehensive examination of the lysine acetylation targets in paper mulberry based on proteomics analyses.
PLoS One. 2021;16:e0240947.
PubMed Abstract available

KIM KS, Jekarl DW, Yoo J, Lee S, et al
Immune gene expression networks in sepsis: A network biology approach.
PLoS One. 2021;16:e0247669.
PubMed Abstract available

HENDERSON D, Zhu SJ, Cole CB, Lunter G, et al
Demographic inference from multiple whole genomes using a particle filter for continuous Markov jump processes.
PLoS One. 2021;16:e0247647.
PubMed Abstract available

PAWAR S, Pandit E, Mohanty IC, Saha D, et al
Population genetic structure and association mapping for iron toxicity tolerance in rice.
PLoS One. 2021;16:e0246232.
PubMed Abstract available

CHEN B, Chu TW, Chiu K, Hong MC, et al
Transcriptomic analysis elucidates the molecular processes associated with hydrogen peroxide-induced diapause termination in Artemia-encysted embryos.
PLoS One. 2021;16:e0247160.
PubMed Abstract available

LI J, Wang Y, Wang L, Zhu J, et al
Integration of transcriptomic and proteomic analyses for finger millet [Eleusine coracana (L.) Gaertn.] in response to drought stress.
PLoS One. 2021;16:e0247181.
PubMed Abstract available

PEI D, Liu Z, Wu W, Hu B, et al
Transcriptome analyses reveal the utilization of nitrogen sources and related metabolic mechanisms of Sporosarcina pasteurii.
PLoS One. 2021;16:e0246818.
PubMed Abstract available

SIM MS, Skennerton CT, Orphan VJ
Physiological, genomic, and sulfur isotopic characterization of methanol metabolism by Desulfovibrio carbinolicus.
PLoS One. 2021;16:e0245069.
PubMed Abstract available

ZEINALABEDINI M, Khoshkholgh Sima NA, Ghaffari MR, Ebadi A, et al
Application of DNA barcodes and spatial analysis in conservation genetics and modeling of Iranian Salicornia genetic resources.
PLoS One. 2021;16:e0241162.
PubMed Abstract available

HEWSON I, Sewell MA
Surveillance of densoviruses and mesomycetozoans inhabiting grossly normal tissues of three Aotearoa New Zealand asteroid species.
PLoS One. 2021;16:e0241026.
PubMed Abstract available

AL-RAJAB M, Lu J, Xu Q
A framework model using multifilter feature selection to enhance colon cancer classification.
PLoS One. 2021;16:e0249094.
PubMed Abstract available

LORUSSO PM, Sekulic A, Sosman JA, Liang WS, et al
Identifying treatment options for BRAFV600 wild-type metastatic melanoma: A SU2C/MRA genomics-enabled clinical trial.
PLoS One. 2021;16:e0248097.
PubMed Abstract available

DINALANKARA W, Ke Q, Geman D, Marchionni L, et al
An R package for divergence analysis of omics data.
PLoS One. 2021;16:e0249002.
PubMed Abstract available

PAPADOPOULOU A, Musa H, Sivaganesan M, McCoy D, et al
COVID-19 susceptibility variants associate with blood clots, thrombophlebitis and circulatory diseases.
PLoS One. 2021;16:e0256988.
PubMed Abstract available

COLE JW, Adigun T, Akinyemi R, Akpa OM, et al
The copy number variation and stroke (CaNVAS) risk and outcome study.
PLoS One. 2021;16:e0248791.
PubMed Abstract available

DAN K, Lee JE, Han D, Kim SM, et al
Proteomic identification of biomarkers in maternal plasma that predict the outcome of rescue cerclage for cervical insufficiency.
PLoS One. 2021;16:e0250031.
PubMed Abstract available

PARRELLO B, Butler R, Chlenski P, Pusch GD, et al
Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC.
PLoS One. 2021;16:e0250092.
PubMed Abstract available

BILLA PA, Faulconnier Y, Ye T, Bourdon C, et al
Nutrigenomic analyses reveal miRNAs and mRNAs affected by feed restriction in the mammary gland of midlactation dairy cows.
PLoS One. 2021;16:e0248680.
PubMed Abstract available

YUN SA, Kim SC
Genetic diversity and structure of Saussurea polylepis (Asteraceae) on continental islands of Korea: Implications for conservation strategies and management.
PLoS One. 2021;16:e0249752.
PubMed Abstract available

FU Y, Thomas A, Gasior D, Harper J, et al
A comparison of shared patterns of differential gene expression and gene ontologies in response to water-stress in roots and leaves of four diverse genotypes of Lolium and Festuca spp. temperate pasture grasses.
PLoS One. 2021;16:e0249636.
PubMed Abstract available

ZHU H, Leung SW
MicroRNA biomarkers of type 2 diabetes: A protocol for corroborating evidence by computational genomics and meta-analyses.
PLoS One. 2021;16:e0247556.
PubMed Abstract available

CHO JC
Human microbiome privacy risks associated with summary statistics.
PLoS One. 2021;16:e0249528.
PubMed Abstract available

BRADFIELD J, Kitchener AC, Buckley M
Selection preferences for animal species used in bone-tool-manufacturing strategies in KwaZulu-Natal, South Africa.
PLoS One. 2021;16:e0249296.
PubMed Abstract available

YOUSEFI-MASHOUF N, Mehrabani-Yeganeh H, Nejati-Javaremi A, Bailey E, et al
Genomic comparisons of Persian Kurdish, Persian Arabian and American Thoroughbred horse populations.
PLoS One. 2021;16:e0247123.
PubMed Abstract available

MASSON F, Rommelaere S, Marra A, Schupfer F, et al
Dual proteomics of Drosophila melanogaster hemolymph infected with the heritable endosymbiont Spiroplasma poulsonii.
PLoS One. 2021;16:e0250524.
PubMed Abstract available

CHAUDHARY P, Khati P, Chaudhary A, Maithani D, et al
Cultivable and metagenomic approach to study the combined impact of nanogypsum and Pseudomonas taiwanensis on maize plant health and its rhizospheric microbiome.
PLoS One. 2021;16:e0250574.
PubMed Abstract available

GONZALEZ-CORONEL JM, Rodriguez-Alonso G, Guevara-Garcia AA
A phylogenetic study of the members of the MAPK and MEK families across Viridiplantae.
PLoS One. 2021;16:e0250584.
PubMed Abstract available

HUANG Y, Chen X, Liu C, Han X, et al
Genetic analysis of 32 InDels in four ethnic minorities from Chinese Xinjiang.
PLoS One. 2021;16:e0250206.
PubMed Abstract available

WANG R, Hu X, Liu X, Bai L, et al
Construction of liver hepatocellular carcinoma-specific lncRNA-miRNA-mRNA network based on bioinformatics analysis.
PLoS One. 2021;16:e0249881.
PubMed Abstract available

CHILAMBI GS, Nordstrom HR, Evans DR, Kowalski RP, et al
Genomic and phenotypic diversity of Enterococcus faecalis isolated from endophthalmitis.
PLoS One. 2021;16:e0250084.
PubMed Abstract available

POSTIC E, Outreman Y, Derocles S, Granado C, et al
Genetics of wild and mass-reared populations of a generalist aphid parasitoid and improvement of biological control.
PLoS One. 2021;16:e0249893.
PubMed Abstract available

SUN X, Zhu H, Li W, Zhao L, et al
Small extracellular vesicles secreted by vaginal fibroblasts exert inhibitory effect in female stress urinary incontinence through regulating the function of fibroblasts.
PLoS One. 2021;16:e0249977.
PubMed Abstract available

MACHADO AF, Ritter CD, Miranda CL, Bredin YK, et al
Potential mammalian species for investigating the past connections between Amazonia and the Atlantic Forest.
PLoS One. 2021;16:e0250016.
PubMed Abstract available

RAWSTHORNE H, Calahorro F, Holden-Dye L, O' Connor V, et al
Investigating autism associated genes in C. elegans reveals candidates with a role in social behaviour.
PLoS One. 2021;16:e0243121.
PubMed Abstract available

ELY B
Genomic GC content drifts downward in most bacterial genomes.
PLoS One. 2021;16:e0244163.
PubMed Abstract available

SOBOLEV VV, Mezentsev AV, Ziganshin RH, Soboleva AG, et al
LC-MS/MS analysis of lesional and normally looking psoriatic skin reveals significant changes in protein metabolism and RNA processing.
PLoS One. 2021;16:e0240956.
PubMed Abstract available

MANOMOHAN V, Saravanan R, Pichler R, Murali N, et al
Legacy of draught cattle breeds of South India: Insights into population structure, genetic admixture and maternal origin.
PLoS One. 2021;16:e0246497.
PubMed Abstract available

GATTO CAFR, Cohn-Haft M
Spatial Congruence Analysis (SCAN): A method for detecting biogeographical patterns based on species range congruences.
PLoS One. 2021;16:e0245818.
PubMed Abstract available

O'SHEA R, Taylor N, Crook A, Jacobs C, et al
Health system interventions to integrate genetic testing in routine oncology services: A systematic review.
PLoS One. 2021;16:e0250379.
PubMed Abstract available

NIGSCH A, Robbe-Austerman S, Stuber TP, Pavinski Bitar PD, et al
Who infects whom?-Reconstructing infection chains of Mycobacterium avium ssp. paratuberculosis in an endemically infected dairy herd by use of genomic data.
PLoS One. 2021;16:e0246983.
PubMed Abstract available

ANTON BP, Fomenkov A, Wu V, Roberts RJ, et al
Genome-wide identification of 5-methylcytosine sites in bacterial genomes by high-throughput sequencing of MspJI restriction fragments.
PLoS One. 2021;16:e0247541.
PubMed Abstract available

BATISTA LG, Gaynor RC, Margarido GRA, Byrne T, et al
Long-term comparison between index selection and optimal independent culling in plant breeding programs with genomic prediction.
PLoS One. 2021;16:e0235554.
PubMed Abstract available

CI J, Wang X, Wang Q, Zhao F, et al
Genome-wide analysis of gibberellin-dioxygenases gene family and their responses to GA applications in maize.
PLoS One. 2021;16:e0250349.
PubMed Abstract available

SUN N, Xie YF, Wu Y, Guo N, et al
Genome-wide identification of ABCC gene family and their expression analysis in pigment deposition of fiber in brown cotton (Gossypium hirsutum).
PLoS One. 2021;16:e0246649.
PubMed Abstract available

HSU CH, Tomiyasu H, Liao CH, Lin CS, et al
Genome-wide DNA methylation and RNA-seq analyses identify genes and pathways associated with doxorubicin resistance in a canine diffuse large B-cell lymphoma cell line.
PLoS One. 2021;16:e0250013.
PubMed Abstract available

MARTINEZ-SANUDO I, Perin C, Cavaletto G, Ortis G, et al
Studying genetic population structure to shed light on the demographic explosion of the rare species Barbitistes vicetinus (Orthoptera, Tettigoniidae).
PLoS One. 2021;16:e0250507.
PubMed Abstract available

DELGADO-SUAREZ EJ, Palos-Guiterrez T, Ruiz-Lopez FA, Hernandez Perez CF, et al
Genomic surveillance of antimicrobial resistance shows cattle and poultry are a moderate source of multi-drug resistant non-typhoidal Salmonella in Mexico.
PLoS One. 2021;16:e0243681.
PubMed Abstract available

OSOZAWA S, Kanai K, Fukuda H, Wakabayashi J, et al
Phylogeography of Ryukyu insular cicadas: Extensive vicariance by island isolation vs accidental dispersal by super typhoon.
PLoS One. 2021;16:e0244342.
PubMed Abstract available

PARK S, Wijeratne AJ, Moon Y, Waterland NL, et al
Time-course transcriptomic analysis of Petunia xhybrida leaves under water deficit stress using RNA sequencing.
PLoS One. 2021;16:e0250284.
PubMed Abstract available

LI Y, Zhao M, Zhang Z
Quantitative proteomics reveals the antifungal effect of canthin-6-one isolated from Ailanthus altissima against Fusarium oxysporum f. sp. cucumerinum in vitro.
PLoS One. 2021;16:e0250712.
PubMed Abstract available

ARIOLI A, Dagliati A, Geary B, Peek N, et al
OptiMissP: A dashboard to assess missingness in proteomic data-independent acquisition mass spectrometry.
PLoS One. 2021;16:e0249771.
PubMed Abstract available

CHOWDHURY UN, Ahmad S, Islam MB, Alyami SA, et al
System biology and bioinformatics pipeline to identify comorbidities risk association: Neurodegenerative disorder case study.
PLoS One. 2021;16:e0250660.
PubMed Abstract available

LIU C, Chen H, Yang X, Zhang C, et al
Exploring the genomic resources of seven domestic Bactrian camel populations in China through restriction site-associated DNA sequencing.
PLoS One. 2021;16:e0250168.
PubMed Abstract available

BAHADO-SINGH RO, Vishweswaraiah S, Aydas B, Yilmaz A, et al
Artificial intelligence and leukocyte epigenomics: Evaluation and prediction of late-onset Alzheimer's disease.
PLoS One. 2021;16:e0248375.
PubMed Abstract available

BUETTI-DINH A, Ruinelli M, Czerski D, Scapozza C, et al
Geochemical and metagenomics study of a metal-rich, green-turquoise-coloured stream in the southern Swiss Alps.
PLoS One. 2021;16:e0248877.
PubMed Abstract available

RUSSUM S, Lam KJK, Wong NA, Iddamsetty V, et al
Comparative population genomic analyses of transporters within the Asgard archaeal superphylum.
PLoS One. 2021;16:e0247806.
PubMed Abstract available

FULTON JC, Amaradasa BS, Ertek TS, Iriarte FB, et al
Phylogenetic and phenotypic characterization of Fusarium oxysporum f. sp. niveum isolates from Florida-grown watermelon.
PLoS One. 2021;16:e0248364.
PubMed Abstract available

AHMAD T, Gupta G, Sharma A, Kaur B, et al
Metagenomic analysis exploring taxonomic and functional diversity of bacterial communities of a Himalayan urban fresh water lake.
PLoS One. 2021;16:e0248116.
PubMed Abstract available

LIU Y, Yao L, Ci Y, Cao X, et al
Genetic differentiation of geographic populations of Rattus tanezumi based on the mitochondrial Cytb gene.
PLoS One. 2021;16:e0248102.
PubMed Abstract available

SZILAGYI A, Bodor A, Tolvai N, Kovacs KL, et al
A comparative analysis of biogas production from tomato bio-waste in mesophilic batch and continuous anaerobic digestion systems.
PLoS One. 2021;16:e0248654.
PubMed Abstract available

ORTOLANO NA, Romero-Morales AI, Rasmussen ML, Bodnya C, et al
A proteomics approach for the identification of cullin-9 (CUL9) related signaling pathways in induced pluripotent stem cell models.
PLoS One. 2021;16:e0248000.
PubMed Abstract available

DE ALMEIDA JR, Riano Pachon DM, Franceschini LM, Dos Santos IB, et al
Revealing the high variability on nonconserved core and mobile elements of Austropuccinia psidii and other rust mitochondrial genomes.
PLoS One. 2021;16:e0248054.
PubMed Abstract available

SHABANNEJAD M, Bihamta MR, Majidi-Hervan E, Alipour H, et al
A classic approach for determining genomic prediction accuracy under terminal drought stress and well-watered conditions in wheat landraces and cultivars.
PLoS One. 2021;16:e0247824.
PubMed Abstract available

AHAMMAD I, Hossain MU, Rahman A, Chowdhury ZM, et al
Wave-wise comparative genomic study for revealing the complete scenario and dynamic nature of COVID-19 pandemic in Bangladesh.
PLoS One. 2021;16:e0258019.
PubMed Abstract available

RAJA A, Malik MFA, Haq F
Genomic relevance of FGF14 and associated genes on the prognosis of pancreatic cancer.
PLoS One. 2021;16:e0252344.
PubMed Abstract available

JAMES N, Bell A
Minimally invasive brain injections for viral-mediated transgenesis: New tools for behavioral genetics in sticklebacks.
PLoS One. 2021;16:e0251653.
PubMed Abstract available

JOHNSON WL, Sohn MB, Taffner S, Chatterjee P, et al
Genomics of Staphylococcus aureus ocular isolates.
PLoS One. 2021;16:e0250975.
PubMed Abstract available

LANGE C, Machado Weber A, Schmidt R, Schroeder C, et al
Changes in protein expression due to metformin treatment and hyperinsulinemia in a human endometrial cancer cell line.
PLoS One. 2021;16:e0248103.
PubMed Abstract available

MACKAY-SMITH A, Dornon MK, Lucier R, Okimoto A, et al
Host-specific gene expression as a tool for introduction success in Naupactus parthenogenetic weevils.
PLoS One. 2021;16:e0248202.
PubMed Abstract available

DIAZ BG, Zucchi MI, Alves-Pereira A, de Almeida CP, et al
Genome-wide SNP analysis to assess the genetic population structure and diversity of Acrocomia species.
PLoS One. 2021;16:e0241025.
PubMed Abstract available

RAHMAN M, Guo Q, Baten A, Mauleon R, et al
Shotgun proteomics of Brassica rapa seed proteins identifies vicilin as a major seed storage protein in the mature seed.
PLoS One. 2021;16:e0253384.
PubMed Abstract available

TABASSUM A, Bag S, Suassuna ND, Conner KN, et al
Genome analysis of cotton leafroll dwarf virus reveals variability in the silencing suppressor protein, genotypes and genomic recombinants in the USA.
PLoS One. 2021;16:e0252523.
PubMed Abstract available

NGWE TUN MM, Kyaw AK, Nabeshima T, Soe AM, et al
Detection of genotype-1 of dengue virus serotype 3 for the first time and complete genome analysis of dengue viruses during the 2018 epidemic in Mandalay, Upper Myanmar.
PLoS One. 2021;16:e0251314.
PubMed Abstract available

CHALAR C, Clivio G, Montagne J, Costabile A, et al
Embryonic developmental arrest in the annual killifish Austrolebias charrua: A proteomic approach to diapause III.
PLoS One. 2021;16:e0251820.
PubMed Abstract available

SILVA DE OLIVEIRA M, Thyeska Castro Alves J, Henrique Caracciolo Gomes de Sa P, Veras AAO, et al
PAN2HGENE-tool for comparative analysis and identifying new gene products.
PLoS One. 2021;16:e0252414.
PubMed Abstract available

CARRILLO-HERNANDEZ MY, Ruiz-Saenz J, Jaimes-Villamizar L, Robledo-Restrepo SM, et al
Phylogenetic and evolutionary analysis of dengue virus serotypes circulating at the Colombian-Venezuelan border during 2015-2016 and 2018-2019.
PLoS One. 2021;16:e0252379.
PubMed Abstract available

RAMIREZ RIOS S, Torres A, Diemer H, Collin-Faure V, et al
A proteomic-informed view of the changes induced by loss of cellular adherence: The example of mouse macrophages.
PLoS One. 2021;16:e0252450.
PubMed Abstract available

RABAGLINO MB, O'Doherty A, Bojsen-Moller Secher J, Lonergan P, et al
Application of multi-omics data integration and machine learning approaches to identify epigenetic and transcriptomic differences between in vitro and in vivo produced bovine embryos.
PLoS One. 2021;16:e0252096.
PubMed Abstract available

JOHNSON KR, Mallon BS, Fann YC, Chen KG, et al
Multivariate meta-analysis reveals global transcriptomic signatures underlying distinct human naive-like pluripotent states.
PLoS One. 2021;16:e0251461.
PubMed Abstract available

KESIMOGLU ZN, Bozdag S
Crinet: A computational tool to infer genome-wide competing endogenous RNA (ceRNA) interactions.
PLoS One. 2021;16:e0251399.
PubMed Abstract available

JOSHI S, Thoday-Kennedy E, Daetwyler HD, Hayden M, et al
High-throughput phenotyping to dissect genotypic differences in safflower for drought tolerance.
PLoS One. 2021;16:e0254908.
PubMed Abstract available

PULUKKODY AC, Yung YP, Donnarumma F, Murray KK, et al
Spatially resolved analysis of Pseudomonas aeruginosa biofilm proteomes measured by laser ablation sample transfer.
PLoS One. 2021;16:e0250911.
PubMed Abstract available

KERZELI IK, Lord M, Doroszko M, Elgendy R, et al
Single-cell RNAseq and longitudinal proteomic analysis of a novel semi-spontaneous urothelial cancer model reveals tumor cell heterogeneity and pretumoral urine protein alterations.
PLoS One. 2021;16:e0253178.
PubMed Abstract available

LIU J, Jiang M, Chen H, Liu Y, et al
Comparative genome analysis revealed gene inversions, boundary expansions and contractions, and gene loss in the Stemona sessilifolia (Miq.) Miq. chloroplast genome.
PLoS One. 2021;16:e0247736.
PubMed Abstract available

CASTRO-PEREIRA D, Peres EA, Pinto-da-Rocha R
Systematics and phylogeography of the Brazilian Atlantic Forest endemic harvestmen Neosadocus Mello-Leitao, 1926 (Arachnida: Opiliones: Gonyleptidae).
PLoS One. 2021;16:e0249746.
PubMed Abstract available

ADDO S, Klingel S, Thaller G, Hinrichs D, et al
Genetic diversity and the application of runs of homozygosity-based methods for inbreeding estimation in German White-headed Mutton sheep.
PLoS One. 2021;16:e0250608.
PubMed Abstract available

JARSBERG LG, Kedia K, Wendler J, Wright AT, et al
Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region.
PLoS One. 2021;16:e0250586.
PubMed Abstract available

QUINONEZ SC, O'Connor BC, Jacobs MF, Mekonnen Tekleab A, et al
The introduction of genetic counseling in Ethiopia: Results of a training workshop and lessons learned.
PLoS One. 2021;16:e0255278.
PubMed Abstract available

JIN J, Chen B, Zhan X, Zhou Z, et al
Network pharmacology and molecular docking study on the mechanism of colorectal cancer treatment using Xiao-Chai-Hu-Tang.
PLoS One. 2021;16:e0252508.
PubMed Abstract available

HE WP, Gu FF, Zhang J, Li XX, et al
Molecular characteristics and risk factor analysis of Staphylococcus aureus colonization put insight into CC1 colonization in three nursing homes in Shanghai.
PLoS One. 2021;16:e0253858.
PubMed Abstract available

BAAS R, J van der Wal F, Bleijerveld OB, van Attikum H, et al
Proteomic analysis identifies novel binding partners of BAP1.
PLoS One. 2021;16:e0257688.
PubMed Abstract available

AKDEL M, van de Geest H, Schijlen E, van Rijswijck IMH, et al
Signal-based optical map alignment.
PLoS One. 2021;16:e0253102.
PubMed Abstract available

STRINGER DN, Bertozzi T, Meusemann K, Delean S, et al
Development and evaluation of a custom bait design based on 469 single-copy protein-coding genes for exon capture of isopods (Philosciidae: Haloniscus).
PLoS One. 2021;16:e0256861.
PubMed Abstract available

KAFITA D, Nkhoma P, Zulu M, Sinkala M, et al
Proteogenomic analysis of pancreatic cancer subtypes.
PLoS One. 2021;16:e0257084.
PubMed Abstract available

BUCRIS E, Indenbaum V, Azar R, Erster O, et al
Direct sequencing of measles virus complete genomes in the midst of a large-scale outbreak.
PLoS One. 2021;16:e0255663.
PubMed Abstract available

TOMESCU MS, Sooklal SA, Ntsowe T, Naicker P, et al
Transcriptome and proteome of the corm, leaf and flower of Hypoxis hemerocallidea (African potato).
PLoS One. 2021;16:e0253741.
PubMed Abstract available

LIU G, Ma JY, Hu G, Jin H, et al
Identification and validation of a novel ferroptosis-related gene model for predicting the prognosis of gastric cancer patients.
PLoS One. 2021;16:e0254368.
PubMed Abstract available

VERGHESE J, Ayers E, Sathyan S, Lipton RB, et al
Trajectories of frailty in aging: Prospective cohort study.
PLoS One. 2021;16:e0253976.
PubMed Abstract available

MARTINEZ-LIU L, Hernandez-Guerrero R, Rivera-Gomez N, Martinez-Nunez MA, et al
Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms.
PLoS One. 2021;16:e0254025.
PubMed Abstract available

JUNG TH, Han KS
Imbalanced dietary intake alters the colonic microbial profile in growing rats.
PLoS One. 2021;16:e0253959.
PubMed Abstract available

TANG X, Li S, Yang X, Tang Q, et al
Novel proteins associated with chronic intermittent hypoxia and obstructive sleep apnea: From rat model to clinical evidence.
PLoS One. 2021;16:e0253943.
PubMed Abstract available

STRASHEIM W, Perovic O, Singh-Moodley A, Kwanda S, et al
Ward-specific clustering of methicillin-resistant Staphylococcus aureus spa-type t037 and t045 in two hospitals in South Africa: 2013 to 2017.
PLoS One. 2021;16:e0253883.
PubMed Abstract available

GAO S, Menendez M, Kurylowicz K, Griffin CT, et al
Genomic locus proteomic screening identifies the NF-kappaB signaling pathway components NFkappaB1 and IKBKG as transcriptional regulators of Ripk3 in endothelial cells.
PLoS One. 2021;16:e0253519.
PubMed Abstract available

CHEN Y, Bi F, Sun Z
A network pharmacology approach to determine the underlying mechanisms of action of Yishen Tongluo formula for the treatment of oligoasthenozoospermia.
PLoS One. 2021;16:e0252906.
PubMed Abstract available

LUEYOT A, Rungsardthong V, Vatanyoopaisarn S, Hutangura P, et al
Influence of collagen and some proteins on gel properties of jellyfish gelatin.
PLoS One. 2021;16:e0253254.
PubMed Abstract available

FLORES-TOLENTINO M, Beltran-Rodriguez L, Morales-Linares J, Ramirez Rodriguez JR, et al
Biogeographic regionalization by spatial and environmental components: Numerical proposal.
PLoS One. 2021;16:e0253152.
PubMed Abstract available

LI X, Tao F, Fan S, Li H, et al
Genetic diversity of Venturia inaequalis isolates (Apple scab) in China and U.K. determined by SSR markers.
PLoS One. 2021;16:e0252865.
PubMed Abstract available

YI G, Shin H, Min K, Lee EJ, et al
Expanded transcriptomic view of strawberry fruit ripening through meta-analysis.
PLoS One. 2021;16:e0252685.
PubMed Abstract available

VIANNA LA, Siqueira MM, Volpini LPB, Louro ID, et al
Seasonality, molecular epidemiology, and virulence of Respiratory Syncytial Virus (RSV): A perspective into the Brazilian Influenza Surveillance Program.
PLoS One. 2021;16:e0251361.
PubMed Abstract available

GENATH A, Petruschke H, von Bergen M, Einspanier R, et al
Influence of formic acid treatment on the proteome of the ectoparasite Varroa destructor.
PLoS One. 2021;16:e0258845.
PubMed Abstract available

FABBRI MC, Dadousis C, Tiezzi F, Maltecca C, et al
Genetic diversity and population history of eight Italian beef cattle breeds using measures of autozygosity.
PLoS One. 2021;16:e0248087.
PubMed Abstract available

ZHU H, Chu W, Han S, Gao B, et al
Urinary proteomics investigations into contrast-induced acute kidney injury.
PLoS One. 2021;16:e0258736.
PubMed Abstract available

ELLEPOLA G, Herath J, Manamendra-Arachchi K, Wijayathilaka N, et al
Molecular species delimitation of shrub frogs of the genus Pseudophilautus (Anura, Rhacophoridae).
PLoS One. 2021;16:e0258594.
PubMed Abstract available

BUSSI Y, Kapon R, Reich Z
Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy.
PLoS One. 2021;16:e0258693.
PubMed Abstract available

HATSTAT AK, Pupi MD, McCafferty DG
Predicting PY motif-mediated protein-protein interactions in the Nedd4 family of ubiquitin ligases.
PLoS One. 2021;16:e0258315.
PubMed Abstract available

YANG T, Zhang W, Zhou T, Wu W, et al
Plant phenomics & precision agriculture simulation of winter wheat growth by the assimilation of unmanned aerial vehicle imagery into the WOFOST model.
PLoS One. 2021;16:e0246874.
PubMed Abstract available

PREISING GA, Faber-Hammond JJ, Renn SCP
Correspondence of aCGH and long-read genome assembly for detection of copy number differences: A proof-of-concept with cichlid genomes.
PLoS One. 2021;16:e0258193.
PubMed Abstract available

FAVARATO RM, Ribeiro LB, Campos A, Porto JIR, et al
Comparative cytogenetics of Serrasalmidae (Teleostei: Characiformes): The relationship between chromosomal evolution and molecular phylogenies.
PLoS One. 2021;16:e0258003.
PubMed Abstract available

BERKOWSKI B, Zapalski MK, Jarochowska E, Alderslade P, et al
Early development and coloniality in Oligophylloides from the Devonian of Morocco-Are Heterocorallia Palaeozoic octocorals?
PLoS One. 2021;16:e0257523.
PubMed Abstract available

CHUAYPEN N, Limothai U, Kunadirek P, Kaewsapsak P, et al
Identification and validation of circulating miRNAs as potential new biomarkers for severe liver disease in patients with leptospirosis.
PLoS One. 2021;16:e0257805.
PubMed Abstract available

GAO S, Xu G, Zeng Z, Lv J, et al
Transboundary spread of peste des petits ruminants virus in western China: A prediction model.
PLoS One. 2021;16:e0257898.
PubMed Abstract available

PONTES-NOGUEIRA M, Martins M, Alencar LRV, Sawaya RJ, et al
The role of vicariance and dispersal on the temporal range dynamics of forest vipers in the Neotropical region.
PLoS One. 2021;16:e0257519.
PubMed Abstract available

KU H, Kabwe M, Chan HT, Stanton C, et al
Novel Drexlerviridae bacteriophage KMI8 with specific lytic activity against Klebsiella michiganensis and its biofilms.
PLoS One. 2021;16:e0257102.
PubMed Abstract available

OSEI-WUSU S, Otchere ID, Morgan P, Musah AB, et al
Genotypic and phenotypic diversity of Mycobacterium tuberculosis complex genotypes prevalent in West Africa.
PLoS One. 2021;16:e0255433.
PubMed Abstract available

GILLENWATER LA, Helmi S, Stene E, Pratte KA, et al
Multi-omics subtyping pipeline for chronic obstructive pulmonary disease.
PLoS One. 2021;16:e0255337.
PubMed Abstract available

KIM EN, Yu J, Lim JS, Jeong H, et al
CRP immunodeposition and proteomic analysis in abdominal aortic aneurysm.
PLoS One. 2021;16:e0245361.
PubMed Abstract available

MOUTSOURI I, Keravnou A, Manoli P, Bertoncini S, et al
Comparative Y-chromosome analysis among Cypriots in the context of historical events and migrations.
PLoS One. 2021;16:e0255140.
PubMed Abstract available

TOKUTOMI N, Nakai K, Sugano S
Extreme value theory as a framework for understanding mutation frequency distribution in cancer genomes.
PLoS One. 2021;16:e0243595.
PubMed Abstract available

VAID RK, Thakur Z, Anand T, Kumar S, et al
Comparative genome analysis of Salmonella enterica serovar Gallinarum biovars Pullorum and Gallinarum decodes strain specific genes.
PLoS One. 2021;16:e0255612.
PubMed Abstract available

GANGOLA S, Joshi S, Kumar S, Sharma B, et al
Differential proteomic analysis under pesticides stress and normal conditions in Bacillus cereus 2D.
PLoS One. 2021;16:e0253106.
PubMed Abstract available

MCAFEE A, Tarpy DR, Foster LJ
Queen honey bees exhibit variable resilience to temperature stress.
PLoS One. 2021;16:e0255381.
PubMed Abstract available

XU Y, Kong D, Li Z, Qian L, et al
Screening and identification of key biomarkers of papillary renal cell carcinoma by bioinformatic analysis.
PLoS One. 2021;16:e0254868.
PubMed Abstract available

ZARUBIN M, Gangapshev A, Gavriljuk Y, Kazalov V, et al
First transcriptome profiling of D. melanogaster after development in a deep underground low radiation background laboratory.
PLoS One. 2021;16:e0255066.
PubMed Abstract available

CARCAMO DE LA CONCEPCION M, Sargent DJ, Surbanovski N, Colgan RJ, et al
De novo sequencing and analysis of the transcriptome of two highbush blueberry (Vaccinium corymbosum L.) cultivars 'Bluecrop' and 'Legacy' at harvest and following post-harvest storage.
PLoS One. 2021;16:e0255139.
PubMed Abstract available

HAN H, Mu X, Wang P, Wang Z, et al
Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses.
PLoS One. 2021;16:e0254535.
PubMed Abstract available

LI Y, Kuhn M, Zukowska-Kasprzyk J, Hennrich ML, et al
Coupling proteomics and metabolomics for the unsupervised identification of protein-metabolite interactions in Chaetomium thermophilum.
PLoS One. 2021;16:e0254429.
PubMed Abstract available

JOHN A, Muenzen K, Ausmees K
Evaluation of serverless computing for scalable execution of a joint variant calling workflow.
PLoS One. 2021;16:e0254363.
PubMed Abstract available

BEZSTAROSTI K, Lamers MM, Doff WAS, Wever PC, et al
Targeted proteomics as a tool to detect SARS-CoV-2 proteins in clinical specimens.
PLoS One. 2021;16:e0259165.
PubMed Abstract available

NIIKURA M, Fukutomi T, Mineo S, Mitobe J, et al
Malaria in the postpartum period causes damage to the mammary gland.
PLoS One. 2021;16:e0258491.
PubMed Abstract available

TZIASTOUDI M, Tsezou A, Stefanidis I
Cadherin and Wnt signaling pathways as key regulators in diabetic nephropathy.
PLoS One. 2021;16:e0255728.
PubMed Abstract available

JIMENEZ-RAMIREZ A, Grivet D, Robledo-Arnuncio JJ
Measuring recent effective gene flow among large populations in Pinus sylvestris: Local pollen shedding does not preclude substantial long-distance pollen immigration.
PLoS One. 2021;16:e0255776.
PubMed Abstract available

RAVELOMBOLA W, Qin J, Shi A, Song Q, et al
Genome-wide association study and genomic selection for yield and related traits in soybean.
PLoS One. 2021;16:e0255761.
PubMed Abstract available

MIO C, Dal Secco C, Marzinotto S, Bruno C, et al
Local occurrence and fast spread of B.1.1.7 lineage: A glimpse into Friuli Venezia Giulia.
PLoS One. 2021;16:e0261229.
PubMed Abstract available

HAENDIGES J, Davidson GR, Pettengill JB, Reed E, et al
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain.
PLoS One. 2021;16:e0259471.
PubMed Abstract available

GAMAGE NW, Bamforth J, Ashfaq T, Bernard K, et al
Profiling of Bacillus cereus on Canadian grain.
PLoS One. 2021;16:e0259209.
PubMed Abstract available

FOSTER SD, Feutry P, Grewe P, Davies C, et al
Sample size requirements for genetic studies on yellowfin tuna.
PLoS One. 2021;16:e0259113.
PubMed Abstract available

ZHU L, Zhu Z, Zhu L, Wang D, et al
The complete mitogenome of Lysmata vittata (Crustacea: Decapoda: Hippolytidae) with implication of phylogenomics and population genetics.
PLoS One. 2021;16:e0255547.
PubMed Abstract available

KEITH MH, Flinn MV, Durbin HJ, Rowan TN, et al
Genetic ancestry, admixture, and population structure in rural Dominica.
PLoS One. 2021;16:e0258735.
PubMed Abstract available

LETTOOF DC, Thomson VA, Cornelis J, Bateman PW, et al
Bioindicator snake shows genomic signatures of natural and anthropogenic barriers to gene flow.
PLoS One. 2021;16:e0259124.
PubMed Abstract available

NGUYEN XV, Nguyen-Nhat NT, Nguyen XT, Dao VH, et al
Analysis of rDNA reveals a high genetic diversity of Halophila major in the Wallacea region.
PLoS One. 2021;16:e0258956.
PubMed Abstract available

SHAFIE A, Khan S, Batra S, Anjum F, et al
Investigating single amino acid substitutions in PIM1 kinase: A structural genomics approach.
PLoS One. 2021;16:e0258929.
PubMed Abstract available

MATSUMOTO K, Sakami T, Watanabe T, Taniuchi Y, et al
Metagenomic analysis provides functional insights into seasonal change of a non-cyanobacterial prokaryotic community in temperate coastal waters.
PLoS One. 2021;16:e0257862.
PubMed Abstract available

MAROTEAU C, Espuela-Ortiz A, Herrera-Luis E, Srinivasan S, et al
LTA4H rs2660845 association with montelukast response in early and late-onset asthma.
PLoS One. 2021;16:e0257396.
PubMed Abstract available

KIM SS, Hudgins AD, Yang J, Zhu Y, et al
A comprehensive integrated post-GWAS analysis of Type 1 diabetes reveals enhancer-based immune dysregulation.
PLoS One. 2021;16:e0257265.
PubMed Abstract available

GONZALEZ-RINCON J, Garcia-Vela JA, Gomez S, Fernandez-Cuevas B, et al
Genomic mutation profile in progressive chronic lymphocytic leukemia patients prior to first-line chemoimmunotherapy with FCR and rituximab maintenance (REM).
PLoS One. 2021;16:e0257353.
PubMed Abstract available

MAGALHAES KX, Silva RDFD, Sawakuchi AO, Goncalves AP, et al
Phylogeography of Baryancistrus xanthellus (Siluriformes: Loricariidae), a rheophilic catfish endemic to the Xingu River basin in eastern Amazonia.
PLoS One. 2021;16:e0256677.
PubMed Abstract available

MONDAL S, Chakraborty H, Saha S, Dey S, et al
High biogeographic and latitudinal variability in gastropod drilling predation on molluscs along the eastern Indian coast: Implications on the history of fossil record of drillholes.
PLoS One. 2021;16:e0256685.
PubMed Abstract available

CHOI Y, Kim B, Ham S, Chung S, et al
Subanesthetic ketamine rapidly alters medial prefrontal miRNAs involved in ubiquitin-mediated proteolysis.
PLoS One. 2021;16:e0256390.
PubMed Abstract available

TORAL KJ, Wuenschel MA, Black EP
Genomic data from NSCLC tumors reveals correlation between SHP-2 activity and PD-L1 expression and suggests synergy in combining SHP-2 and PD-1/PD-L1 inhibitors.
PLoS One. 2021;16:e0256416.
PubMed Abstract available

BARRECA A, Bottasso E, Veneziano F, Giarin M, et al
Immunohistochemical typing of amyloid in fixed paraffin-embedded samples by an automatic procedure: Comparison with immunofluorescence data on fresh-frozen tissue.
PLoS One. 2021;16:e0256306.
PubMed Abstract available

ZACHO CM, Bager MA, Margaryan A, Gravlund P, et al
Uncovering the genomic and metagenomic research potential in old ethanol-preserved snakes.
PLoS One. 2021;16:e0256353.
PubMed Abstract available

ZYTNICKI M, Gonzalez I
Finding differentially expressed sRNA-Seq regions with srnadiff.
PLoS One. 2021;16:e0256196.
PubMed Abstract available

YAO J, Chen Z, Liu Z
Improved ensemble of differential evolution variants.
PLoS One. 2021;16:e0256206.
PubMed Abstract available

THALDAR D, Townsend B, Botes M, Shozi B, et al
A virtual deliberative public engagement study on heritable genome editing among South Africans: Study protocol.
PLoS One. 2021;16:e0256097.
PubMed Abstract available

PLOYPETCH S, Roytrakul S, Jaresitthikunchai J, Phaonakrop N, et al
Salivary proteomics in monitoring the therapeutic response of canine oral melanoma.
PLoS One. 2021;16:e0256167.
PubMed Abstract available

VAIMBERG E, Demers L, Ford E, Sabatello M, et al
Project Inclusive Genetics: Exploring the impact of patient-centered counseling training on physical disability bias in the prenatal setting.
PLoS One. 2021;16:e0255722.
PubMed Abstract available

FUJIWARA Y, Tanno Y, Sugishita H, Kishi Y, et al
Preparation of optimized concanavalin A-conjugated Dynabeads(R) magnetic beads for CUT&Tag.
PLoS One. 2021;16:e0259846.
PubMed Abstract available

ALKEMA W, Boekhorst J, Eijlander RT, Schnittger S, et al
Charting host-microbe co-metabolism in skin aging and application to metagenomics data.
PLoS One. 2021;16:e0258960.
PubMed Abstract available

DIAZ P, Sarmiento F, Mathew B, Ballvora A, et al
Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS.
PLoS One. 2021;16:e0259690.
PubMed Abstract available

YE F, Shi GR, Bitner MA
Global biogeography of living brachiopods: Bioregionalization patterns and possible controls.
PLoS One. 2021;16:e0259004.
PubMed Abstract available

VEARS DF, Minion JT, Roberts SJ, Cummings J, et al
Return of individual research results from genomic research: A systematic review of stakeholder perspectives.
PLoS One. 2021;16:e0258646.
PubMed Abstract available

BOWLER-BARNETT E, Martinez-Garcia FD, Sherwood M, Aleidan A, et al
Proteomic characterization of GSK3beta knockout shows altered cell adhesion and metabolic pathway utilisation in colorectal cancer cells.
PLoS One. 2021;16:e0246707.
PubMed Abstract available

CHRISTENSEN KA, Rondeau EB, Sakhrani D, Biagi CA, et al
The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle.
PLoS One. 2021;16:e0255752.
PubMed Abstract available

DEPASQUALE EAK, Alganem K, Bentea E, Nawreen N, et al
KRSA: An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data.
PLoS One. 2021;16:e0260440.
PubMed Abstract available

PETERSON MJ, Handakumbura PP, Thompson AM, Russell ZR, et al
Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil.
PLoS One. 2021;16:e0259937.
PubMed Abstract available

ZHANG Y, Chen Q, Huang Y, Zhao R, et al
Gene excavation and expression analysis of CYP and UGT related to the post modifying stage of gypenoside biosynthesis in Gynostemma pentaphyllum (Thunb.) Makino by comprehensive analysis of RNA and proteome sequencing.
PLoS One. 2021;16:e0260027.
PubMed Abstract available

O'CONNELL JS, Li B, Zito A, Ahmed A, et al
Treatment of necrotizing enterocolitis by conditioned medium derived from human amniotic fluid stem cells.
PLoS One. 2021;16:e0260522.
PubMed Abstract available

ZIMMERMANN BM, Shaw DM, Elger B, Kone I, et al
The use of heuristics in genetic testing decision-making: A qualitative interview study.
PLoS One. 2021;16:e0260597.
PubMed Abstract available

FAGERQUIST CK, Dodd CE
Top-down proteomic identification of plasmid and host proteins produced by pathogenic Escherichia coli using MALDI-TOF-TOF tandem mass spectrometry.
PLoS One. 2021;16:e0260650.
PubMed Abstract available

XIAO L, Xiao W, Lin S
Ten genes are considered as potential biomarkers for the diagnosis of dermatomyositis.
PLoS One. 2021;16:e0260511.
PubMed Abstract available

CHEN J, Liu K, Zha W, Zhou L, et al
Identification and verification of grain shape QTLs by SNP array in rice.
PLoS One. 2021;16:e0260133.
PubMed Abstract available

HADDAD-BOUBAKER S, Ben Hamda C, Ghedira K, Mefteh K, et al
Phylogeography and phylogeny of Rhinoviruses collected from Severe Acute Respiratory Infection (SARI) cases over successive epidemic periods in Tunisia.
PLoS One. 2021;16:e0259859.
PubMed Abstract available

LIU YY, Chen CC
A machine learning-based typing scheme refinement for Listeria monocytogenes core genome multilocus sequence typing with high discriminatory power for common source outbreak tracking.
PLoS One. 2021;16:e0260293.
PubMed Abstract available

MEHRA Y, Viswanathan P
High-quality whole-genome sequence analysis of Lactobacillus paragasseri UBLG-36 reveals oxalate-degrading potential of the strain.
PLoS One. 2021;16:e0260116.
PubMed Abstract available

CARVALHO CA, Furo IO, O'Brien PCM, Pereira J, et al
Comparative chromosome painting in Spizaetus tyrannus and Gallus gallus with the use of macro- and microchromosome probes.
PLoS One. 2021;16:e0259905.
PubMed Abstract available

MOKHTAR MM, Alsamman AM, Abd-Elhalim HM, El Allali A, et al
CicerSpTEdb: A web-based database for high-resolution genome-wide identification of transposable elements in Cicer species.
PLoS One. 2021;16:e0259540.
PubMed Abstract available

SINGH A, Kumar A, Mehrotra A, A K, et al
Estimation of linkage disequilibrium levels and allele frequency distribution in crossbred Vrindavani cattle using 50K SNP data.
PLoS One. 2021;16:e0259572.
PubMed Abstract available

ALAM MNU, Jewel GMNA, Azim T, Seraj ZI, et al
Novel QTLs for salinity tolerance revealed by genome-wide association studies of biomass, chlorophyll and tissue ion content in 176 rice landraces from Bangladesh.
PLoS One. 2021;16:e0259456.
PubMed Abstract available

LEHOCKA K, Black SA, Harland A, Kadlecik O, et al
Genetic diversity, viability and conservation value of the global captive population of the Moroccan Royal lions.
PLoS One. 2021;16:e0258714.
PubMed Abstract available

NAKAMURA A, Takahashi H, Arai M, Tsuchiya T, et al
Molecular subtyping for source tracking of Escherichia coli using core genome multilocus sequence typing at a food manufacturing plant.
PLoS One. 2021;16:e0261352.
PubMed Abstract available

VOIGT B, Fischer O, Krumnow C, Herta C, et al
NGS read classification using AI.
PLoS One. 2021;16:e0261548.
PubMed Abstract available

TAMANG JP, Kharnaior P, Pariyar P, Thapa N, et al
Shotgun sequence-based metataxonomic and predictive functional profiles of Pe poke, a naturally fermented soybean food of Myanmar.
PLoS One. 2021;16:e0260777.
PubMed Abstract available

DEVANGA RAGUPATHI NK, Muthuirulandi Sethuvel DP, Murugan D, Ranjan R, et al
Divergent evolution of Corynebacterium diphtheriae in India: An update from National Diphtheria Surveillance network.
PLoS One. 2021;16:e0261435.
PubMed Abstract available

DOUGLAS MR, Mussmann SM, Chafin TK, Anthonysamy WJB, et al
Population connectivity in voles (Microtus sp.) as a gauge for tall grass prairie restoration in midwestern North America.
PLoS One. 2021;16:e0260344.
PubMed Abstract available

FOOTE SL, Lipner EM, Prevots DR, Ricotta EE, et al
Environmental predictors of pulmonary nontuberculous mycobacteria (NTM) sputum positivity among persons with cystic fibrosis in the state of Florida.
PLoS One. 2021;16:e0259964.
PubMed Abstract available

VAN HOOFT P, Getz WM, Greyling BJ, Zwaan B, et al
A continent-wide high genetic load in African buffalo revealed by clines in the frequency of deleterious alleles, genetic hitchhiking and linkage disequilibrium.
PLoS One. 2021;16:e0259685.
PubMed Abstract available

SITPRIJA S, Chanhome L, Reamtong O, Thiangtrongjit T, et al
Proteomics and immunocharacterization of Asian mountain pit viper (Ovophis monticola) venom.
PLoS One. 2021;16:e0260496.
PubMed Abstract available

CHAN A, Ayala JM, Alvarez F, Piccirillo C, et al
The role of Leishmania GP63 in the modulation of innate inflammatory response to Leishmania major infection.
PLoS One. 2021;16:e0262158.
PubMed Abstract available

MENG W, Zhao C, Gao Y
Comparison of urine proteome among rat models by intraperitoneal injection with single bacteria and co-injection with two bacteria.
PLoS One. 2021;16:e0261488.
PubMed Abstract available

LAMB HJ, Hayes BJ, Randhawa IAS, Nguyen LT, et al
Genomic prediction using low-coverage portable Nanopore sequencing.
PLoS One. 2021;16:e0261274.
PubMed Abstract available

MITCHELL LJ, Tettamanti V, Rhodes JS, Marshall NJ, et al
CRISPR/Cas9-mediated generation of biallelic F0 anemonefish (Amphiprion ocellaris) mutants.
PLoS One. 2021;16:e0261331.
PubMed Abstract available

ZULKEFLI NJ, Teh CSJ, Mariappan V, Ngoi ST, et al
Genomic comparison and phenotypic profiling of small colony variants of Burkholderia pseudomallei.
PLoS One. 2021;16:e0261382.
PubMed Abstract available

FLANAGAN S, Rowe A, Duggan V, Markle E, et al
Development of a real-time PCR assay to detect the single nucleotide polymorphism causing Warmblood Fragile Foal Syndrome.
PLoS One. 2021;16:e0259316.
PubMed Abstract available

NAZARSHODEH E, Marashi SA, Gharaghani S
Structural systems pharmacology: A framework for integrating metabolic network and structure-based virtual screening for drug discovery against bacteria.
PLoS One. 2021;16:e0261267.
PubMed Abstract available

January 2020

KORDY K, Gaufin T, Mwangi M, Li F, et al
Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve.
PLoS One. 2020;15:e0219633.
PubMed Abstract available

XU P, Tang G, Cui W, Chen G, et al
Transcriptional Differences in Peanut (Arachis hypogaea L.) Seeds at the Freshly Harvested, After-ripening and Newly Germinated Seed Stages: Insights into the Regulatory Networks of Seed Dormancy Release and Germination.
PLoS One. 2020;15:e0219413.
PubMed Abstract available

GRAHAM CF, Boreham DR, Manzon RG, Stott W, et al
How "simple" methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish.
PLoS One. 2020;15:e0226608.
PubMed Abstract available

NOTT MA, Driscoll HE, Takeda M, Vangala M, et al
Advanced biofilm analysis in streams receiving organic deicer runoff.
PLoS One. 2020;15:e0227567.
PubMed Abstract available

LV L, Yu K, Lu H, Zhang X, et al
Transcriptome-wide identification of novel circular RNAs in soybean in response to low-phosphorus stress.
PLoS One. 2020;15:e0227243.
PubMed Abstract available

RASMUSSEN SL, Nielsen JL, Jones OR, Berg TB, et al
Genetic structure of the European hedgehog (Erinaceus europaeus) in Denmark.
PLoS One. 2020;15:e0227205.
PubMed Abstract available

SETIAWAN AB, Teo CH, Kikuchi S, Sassa H, et al
Centromeres of Cucumis melo L. comprise Cmcent and two novel repeats, CmSat162 and CmSat189.
PLoS One. 2020;15:e0227578.
PubMed Abstract available

VEITH M, Gocmen B, Sotiropoulos K, Eleftherakos K, et al
Phylogeographic analyses point to long-term survival on the spot in micro-endemic Lycian salamanders.
PLoS One. 2020;15:e0226326.
PubMed Abstract available

MA Z, Wang L, Zhao M, Gu S, et al
iTRAQ proteomics reveals the regulatory response to Magnaporthe oryzae in durable resistant vs. susceptible rice genotypes.
PLoS One. 2020;15:e0227470.
PubMed Abstract available

ARAUCO-SHAPIRO G, Schumacher KI, Boersma D, Bouzat JL, et al
The role of demographic history and selection in shaping genetic diversity of the Galapagos penguin (Spheniscus mendiculus).
PLoS One. 2020;15:e0226439.
PubMed Abstract available

LONGCHAMPS RJ, Castellani CA, Yang SY, Newcomb CE, et al
Evaluation of mitochondrial DNA copy number estimation techniques.
PLoS One. 2020;15:e0228166.
PubMed Abstract available

HE D, Zhang J, Zhang X, He S, et al
Development of SSR markers in Paeonia based on De Novo transcriptomic assemblies.
PLoS One. 2020;15:e0227794.
PubMed Abstract available

WISCOVITCH-RUSSO R, Rivera-Perez J, Narganes-Storde YM, Garcia-Roldan E, et al
Pre-Columbian zoonotic enteric parasites: An insight into Puerto Rican indigenous culture diets and life styles.
PLoS One. 2020;15:e0227810.
PubMed Abstract available

KIM SH, Kim SW, Lim GH, Lyu JI, et al
Transcriptome analysis to identify candidate genes associated with the yellow-leaf phenotype of a Cymbidium mutant generated by gamma-irradiation.
PLoS One. 2020;15:e0228078.
PubMed Abstract available

SMIDT EC, Paez MZ, Vieira LDN, Viruel J, et al
Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae).
PLoS One. 2020;15:e0227991.
PubMed Abstract available

HERZBERG D, Strobel P, Muller H, Meneses C, et al
Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness.
PLoS One. 2020;15:e0228134.
PubMed Abstract available

CHUNG YW, Gwak HJ, Moon S, Rho M, et al
Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
PLoS One. 2020;15:e0227886.
PubMed Abstract available

DE CESARE A, Sala C, Castellani G, Astolfi A, et al
Effect of Lactobacillus acidophilus D2/CSL (CECT 4529) supplementation in drinking water on chicken crop and caeca microbiome.
PLoS One. 2020;15:e0228338.
PubMed Abstract available

AHSAN T, Urmi NJ, Sajib AA
Heterogeneity in the distribution of 159 drug-response related SNPs in world populations and their genetic relatedness.
PLoS One. 2020;15:e0228000.
PubMed Abstract available

TIAN X, Xie J, Yu J
Physiological and transcriptomic responses of Lanzhou Lily (Lilium davidii, var. unicolor) to cold stress.
PLoS One. 2020;15:e0227921.
PubMed Abstract available

CHEN SM, Lin CE, Chen HH, Cheng YF, et al
Effect of prednisolone on glyoxalase 1 in an inbred mouse model of aristolochic acid nephropathy using a proteomics method with fluorogenic derivatization-liquid chromatography-tandem mass spectrometry.
PLoS One. 2020;15:e0227838.
PubMed Abstract available

VAN HOUT D, Verschuuren TD, Bruijning-Verhagen PCJ, Bosch T, et al
Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content.
PLoS One. 2020;15:e0227604.
PubMed Abstract available

KHADIR A, Madhu D, Kavalakatt S, Cherian P, et al
PR3 levels are impaired in plasma and PBMCs from Arabs with cardiovascular diseases.
PLoS One. 2020;15:e0227606.
PubMed Abstract available

RONDINONE V, Serrecchia L, Parisi A, Fasanella A, et al
Genetic characterization of Bacillus anthracis strains circulating in Italy from 1972 to 2018.
PLoS One. 2020;15:e0227875.
PubMed Abstract available

MOHAMED A, Collins J, Jiang H, Molendijk J, et al
Concurrent lipidomics and proteomics on malignant plasma cells from multiple myeloma patients: Probing the lipid metabolome.
PLoS One. 2020;15:e0227455.
PubMed Abstract available

LV Y, He XY, Li D, Liu T, et al
Sex-specific and opposite modulatory aspects revealed by PPI network and pathway analysis of ischemic stroke in humans.
PLoS One. 2020;15:e0227481.
PubMed Abstract available

HOANG TTH, Dang DA, Pham TH, Luong MH, et al
Epidemiological and comparative genomic analysis of Bacillus anthracis isolated from northern Vietnam.
PLoS One. 2020;15:e0228116.
PubMed Abstract available

TFAILY MA, Nassar F, Sellam LS, Amir-Tidadini ZC, et al
miRNA expression in advanced Algerian breast cancer tissues.
PLoS One. 2020;15:e0227928.
PubMed Abstract available

BABA T, Momen M, Campbell MT, Walia H, et al
Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping.
PLoS One. 2020;15:e0228118.
PubMed Abstract available

RAMDASI AY, Arankalle VA
The expression patterns of immune response genes in the Peripheral Blood Mononuclear cells of pregnant women presenting with subclinical or clinical HEV infection are different and trimester-dependent: A whole transcriptome analysis.
PLoS One. 2020;15:e0228068.
PubMed Abstract available

MOLES L, Gomez M, Moroder E, Bustos G, et al
Staphylococcus epidermidis in feedings and feces of preterm neonates.
PLoS One. 2020;15:e0227823.
PubMed Abstract available

CHIUMIENTO IR, Ituarte S, Sun J, Qiu JW, et al
Hemocyanin of the caenogastropod Pomacea canaliculata exhibits evolutionary differences among gastropod clades.
PLoS One. 2020;15:e0228325.
PubMed Abstract available

DAMAZIAK K, Kieliszek M, Buclaw M
Characterization of structure and protein of vitelline membranes of precocial (ring-necked pheasant, gray partridge) and superaltricial (cockatiel parrot, domestic pigeon) birds.
PLoS One. 2020;15:e0228310.
PubMed Abstract available

MOBARK NA, Alharbi M, Alhabeeb L, AlMubarak L, et al
Clinical management and genomic profiling of pediatric low-grade gliomas in Saudi Arabia.
PLoS One. 2020;15:e0228356.
PubMed Abstract available

ROMAGNOLI CL, Pellegrino KCM, Silva NM, Brianesi UA, et al
Diversity of Mycobacteriaceae from aquatic environment at the Sao Paulo Zoological Park Foundation in Brazil.
PLoS One. 2020;15:e0227759.
PubMed Abstract available

MORRO B, Doherty MK, Balseiro P, Handeland SO, et al
Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss).
PLoS One. 2020;15:e0227003.
PubMed Abstract available

RANDHAWA GS, Soltysiak MPM, El Roz H, de Souza CPE, et al
Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study.
PLoS One. 2020;15:e0232391.
PubMed Abstract available

DEVANGA RAGUPATHI NK, Veeraraghavan B, Muthuirulandi Sethuvel DP, Anandan S, et al
First Indian report on genome-wide comparison of multidrug-resistant Escherichia coli from blood stream infections.
PLoS One. 2020;15:e0220428.
PubMed Abstract available

VAN NEER W, Alhaique F, Wouters W, Dierickx K, et al
Aquatic fauna from the Takarkori rock shelter reveals the Holocene central Saharan climate and palaeohydrography.
PLoS One. 2020;15:e0228588.
PubMed Abstract available

REYNOLDS DA, Yoo MJ, Dixson DL, Ross C, et al
Exposure to the Florida red tide dinoflagellate, Karenia brevis, and its associated brevetoxins induces ecophysiological and proteomic alterations in Porites astreoides.
PLoS One. 2020;15:e0228414.
PubMed Abstract available

KIM MH, Jeong H, Sim YM, Lee S, et al
Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications.
PLoS One. 2020;15:e0229416.
PubMed Abstract available

CASSINI CS, Taucce PPG, de Carvalho TR, Fouquet A, et al
One step beyond a broad molecular phylogenetic analysis: Species delimitation of Adenomera marmorata Steindachner, 1867 (Anura: Leptodactylidae).
PLoS One. 2020;15:e0229324.
PubMed Abstract available

CRISCUOLO NG, Angelini C
StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis.
PLoS One. 2020;15:e0229330.
PubMed Abstract available

YAO L, Yu Q, Huang M, Song Z, et al
Comparative iTRAQ proteomic profiling of sweet orange fruit on sensitive and tolerant rootstocks infected by 'Candidatus Liberibacter asiaticus'.
PLoS One. 2020;15:e0228876.
PubMed Abstract available

ZHU W, Cheng X, Ren C, Chen J, et al
Proteomic characterization and comparison of ram (Ovis aries) and buck (Capra hircus) spermatozoa proteome using a data independent acquisition mass spectometry (DIA-MS) approach.
PLoS One. 2020;15:e0228656.
PubMed Abstract available

GU L, Wang F, Lin Z, Xu T, et al
Genetic characteristics of Jiaji Duck by whole genome re-sequencing.
PLoS One. 2020;15:e0228964.
PubMed Abstract available

IBETO L, Antonopoulos A, Grassi P, Pang PC, et al
Insights into the hyperglycosylation of human chorionic gonadotropin revealed by glycomics analysis.
PLoS One. 2020;15:e0228507.
PubMed Abstract available

COOMBS GW, Baines SL, Howden BP, Swenson KM, et al
Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus.
PLoS One. 2020;15:e0228676.
PubMed Abstract available

KHRUNIN AV, Khvorykh GV, Fedorov AN, Limborska SA, et al
Genomic landscape of the signals of positive natural selection in populations of Northern Eurasia: A view from Northern Russia.
PLoS One. 2020;15:e0228778.
PubMed Abstract available

VOLC SM, Ramos CRN, Galvao HCR, Felicio PS, et al
The Brazilian TP53 mutation (R337H) and sarcomas.
PLoS One. 2020;15:e0227260.
PubMed Abstract available

HIN N, Newman M, Kaslin J, Douek AM, et al
Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2.
PLoS One. 2020;15:e0227258.
PubMed Abstract available

JHA AR, Shmalberg J, Tanprasertsuk J, Perry L, et al
Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach.
PLoS One. 2020;15:e0227289.
PubMed Abstract available

PETZOLD A, Hassanin A
A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla).
PLoS One. 2020;15:e0217956.
PubMed Abstract available

GENG W, Qi Y, Li W, McConville TH, et al
Epidemiology of Staphylococcus aureus in neonates on admission to a Chinese neonatal intensive care unit.
PLoS One. 2020;15:e0211845.
PubMed Abstract available

KIM KH, Kim JY, Lim WJ, Jeong S, et al
Genome-wide association and epistatic interactions of flowering time in soybean cultivar.
PLoS One. 2020;15:e0228114.
PubMed Abstract available

AL-WAJEEH AS, Salhimi SM, Al-Mansoub MA, Khalid IA, et al
Comparative proteomic analysis of different stages of breast cancer tissues using ultra high performance liquid chromatography tandem mass spectrometer.
PLoS One. 2020;15:e0227404.
PubMed Abstract available

TUCCI P, Portela M, Chetto CR, Gonzalez-Sapienza G, et al
Integrative proteomic and glycoproteomic profiling of Mycobacterium tuberculosis culture filtrate.
PLoS One. 2020;15:e0221837.
PubMed Abstract available

BRUMFIELD KD, Huq A, Colwell RR, Olds JL, et al
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
PLoS One. 2020;15:e0228899.
PubMed Abstract available

TUSIIME FM, Gizaw A, Gussarova G, Nemomissa S, et al
Afro-alpine flagships revisited: Parallel adaptation, intermountain admixture and shallow genetic structuring in the giant senecios (Dendrosenecio).
PLoS One. 2020;15:e0228979.
PubMed Abstract available

YE L, Liu P, Shi T, Wang A, et al
Transcriptomic analysis to elucidate the response of honeybees (Hymenoptera: Apidae) to amitraz treatment.
PLoS One. 2020;15:e0228933.
PubMed Abstract available

BELTER A, Barciszewski J, Barciszewska AM
Revealing the epigenetic effect of temozolomide on glioblastoma cell lines in therapeutic conditions.
PLoS One. 2020;15:e0229534.
PubMed Abstract available

SOLLER JM, Ausband DE, Szykman Gunther M
The curse of observer experience: Error in noninvasive genetic sampling.
PLoS One. 2020;15:e0229762.
PubMed Abstract available

RHEAD B, Shao X, Quach H, Ghai P, et al
Global expression and CpG methylation analysis of primary endothelial cells before and after TNFa stimulation reveals gene modules enriched in inflammatory and infectious diseases and associated DMRs.
PLoS One. 2020;15:e0230884.
PubMed Abstract available

HORITA T, Gaballah MH, Fukuta M, Kanno S, et al
Time course analysis of large-scale gene expression in incised muscle using correspondence analysis.
PLoS One. 2020;15:e0230737.
PubMed Abstract available

JANGID A, Fukuda S, Seki M, Horiuchi T, et al
Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice.
PLoS One. 2020;15:e0228358.
PubMed Abstract available

QUINTEIRO J, Rodriguez-Castro J, Rey-Mendez M, Gonzalez-Henriquez N, et al
Phylogeography of the insular populations of common octopus, Octopus vulgaris Cuvier, 1797, in the Atlantic Macaronesia.
PLoS One. 2020;15:e0230294.
PubMed Abstract available

NAINO JIKA AK, Le Ru B, Capdevielle-Dulac C, Chardonnet F, et al
Population genetics of the Mediterranean corn borer (Sesamia nonagrioides) differs between wild and cultivated plants.
PLoS One. 2020;15:e0230434.
PubMed Abstract available

ALBRECHT F, Hering J, Fuchs E, Illera JC, et al
Phylogeny of the Eurasian Wren Nannus troglodytes (Aves: Passeriformes: Troglodytidae) reveals deep and complex diversification patterns of Ibero-Maghrebian and Cyrenaican populations.
PLoS One. 2020;15:e0230151.
PubMed Abstract available

IVANOVA AA, Zhelezova AD, Chernov TI, Dedysh SN, et al
Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils.
PLoS One. 2020;15:e0230157.
PubMed Abstract available

HERREN GL, Habraken J, Waeyenberge L, Haegeman A, et al
Effects of synthetic fertilizer and farm compost on soil nematode community in long-term crop rotation plots: A morphological and metabarcoding approach.
PLoS One. 2020;15:e0230153.
PubMed Abstract available

SUO W, Shi X, Xu S, Li X, et al
Towards low cost, multiplex clinical genotyping: 4-fluorescent Kompetitive Allele-Specific PCR and its application on pharmacogenetics.
PLoS One. 2020;15:e0230445.
PubMed Abstract available

HIRATSUKA VY, Beans JA, Blanchard JW, Reedy J, et al
An Alaska Native community's views on genetic research, testing, and return of results: Results from a public deliberation.
PLoS One. 2020;15:e0229540.
PubMed Abstract available

TRON C, Woillard JB, Houssel-Debry P, David V, et al
Pharmacogenetic-Whole blood and intracellular pharmacokinetic-Pharmacodynamic (PG-PK2-PD) relationship of tacrolimus in liver transplant recipients.
PLoS One. 2020;15:e0230195.
PubMed Abstract available

SOUTHEY BR, Rodriguez-Zas SL, Rhodes JS, Sweedler JV, et al
Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies.
PLoS One. 2020;15:e0228562.
PubMed Abstract available

MAGALHAES BRDS, Sosa-Gomez DR, Dionisio JF, Dias FC, et al
Cytogenetic markers applied to cytotaxonomy in two soybean pests: Anticarsia gemmatalis (Hubner, 1818) and Chrysodeixis includens (Walker, 1858).
PLoS One. 2020;15:e0230244.
PubMed Abstract available

FAHSBENDER E, Charlys da-Costa A, Elise Gill D, Augusto de Padua Milagres F, et al
Plasma virome of 781 Brazilians with unexplained symptoms of arbovirus infection include a novel parvovirus and densovirus.
PLoS One. 2020;15:e0229993.
PubMed Abstract available

TIRUVAYIPATI S, Wolfgeher D, Yue M, Duan F, et al
Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles.
PLoS One. 2020;15:e0228871.
PubMed Abstract available

LO S, Fatokun C, Boukar O, Gepts P, et al
Identification of QTL for perenniality and floral scent in cowpea (Vigna unguiculata [L.] Walp.).
PLoS One. 2020;15:e0229167.
PubMed Abstract available

PUJOL-CANADELL M, Perrier JR, Cunha L, Shuryak I, et al
Cytogenetically-based biodosimetry after high doses of radiation.
PLoS One. 2020;15:e0228350.
PubMed Abstract available

SZILAGYI GT, Nawrocki AM, Eros K, Schmidt J, et al
Proteomic changes during experimental de- and remyelination in the corpus callosum.
PLoS One. 2020;15:e0230249.
PubMed Abstract available

FARIA DM, da Silva JM Jr, Pires Costa L, Rezende Paiva S, et al
Low mtDNA diversity in a highly differentiated population of spinner dolphins (Stenella longirostris) from the Fernando de Noronha Archipelago, Brazil.
PLoS One. 2020;15:e0230660.
PubMed Abstract available

LOPEZ-GARCIA G, Jerez JM, Franco L, Veredas FJ, et al
Transfer learning with convolutional neural networks for cancer survival prediction using gene-expression data.
PLoS One. 2020;15:e0230536.
PubMed Abstract available

LOZADA DN, Ward BP, Carter AH
Gains through selection for grain yield in a winter wheat breeding program.
PLoS One. 2020;15:e0221603.
PubMed Abstract available

FUKUDA S, Tacharoenmuang R, Guntapong R, Upachai S, et al
Full genome characterization of novel DS-1-like G9P[8] rotavirus strains that have emerged in Thailand.
PLoS One. 2020;15:e0231099.
PubMed Abstract available

TIMPANO EK, Scheible MKR, Meiklejohn KA
Optimization of the second internal transcribed spacer (ITS2) for characterizing land plants from soil.
PLoS One. 2020;15:e0231436.
PubMed Abstract available

RAMOS-NINO ME, Fitzpatrick DM, Eckstrom KM, Tighe S, et al
Metagenomic analysis of Aedes aegypti and Culex quinquefasciatus mosquitoes from Grenada, West Indies.
PLoS One. 2020;15:e0231047.
PubMed Abstract available

NAM B, Kim SA, Park SD, Kim HJ, et al
Regulatory effects of Lactobacillus plantarum HY7714 on skin health by improving intestinal condition.
PLoS One. 2020;15:e0231268.
PubMed Abstract available

JIANG Y, Sun Q, Fan M, Zhang X, et al
Molecular characterization of a whirlin-like protein with biomineralization-related functions from the shell of Mytilus coruscus.
PLoS One. 2020;15:e0231414.
PubMed Abstract available

TATEHANA M, Kimura R, Mochizuki K, Inada H, et al
Comprehensive histochemical profiles of histone modification in male germline cells during meiosis and spermiogenesis: Comparison of young and aged testes in mice.
PLoS One. 2020;15:e0230930.
PubMed Abstract available

HESS MK, Rowe SJ, Van Stijn TC, Henry HM, et al
A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling.
PLoS One. 2020;15:e0219882.
PubMed Abstract available

BLEKHMAN A, Goryacheva I, Schepetov D, Zakharov I, et al
Variability of the mitochondrial CO1 gene in native and invasive populations of Harmonia axyridis Pall. comparative analysis.
PLoS One. 2020;15:e0231009.
PubMed Abstract available

ROSSO A, Pitini E, D'Andrea E, Di Marco M, et al
Genomics knowledge and attitudes among European public health professionals: Results of a cross-sectional survey.
PLoS One. 2020;15:e0230749.
PubMed Abstract available

CHARMET G, Tran LG, Auzanneau J, Rincent R, et al
BWGS: A R package for genomic selection and its application to a wheat breeding programme.
PLoS One. 2020;15:e0222733.
PubMed Abstract available

GAO J, Li WB, Liu HF, Chen FB, et al
Identification of differential expression genes related to anthocyanin biosynthesis in carmine radish (Raphanus sativus L.) fleshy roots using comparative RNA-Seq method.
PLoS One. 2020;15:e0231729.
PubMed Abstract available

BALL S, Hand N, Willman F, Durrant C, et al
Genetic and demographic vulnerability of adder populations: Results of a genetic study in mainland Britain.
PLoS One. 2020;15:e0231809.
PubMed Abstract available

JOSHI B, Lyngdoh S, Singh SK, Sharma R, et al
Revisiting the Woolly wolf (Canis lupus chanco) phylogeny in Himalaya: Addressing taxonomy, spatial extent and distribution of an ancient lineage in Asia.
PLoS One. 2020;15:e0231621.
PubMed Abstract available

UJCIKOVA H, Cechova K, Jagr M, Roubalova L, et al
Proteomic analysis of protein composition of rat hippocampus exposed to morphine for 10 days; comparison with animals after 20 days of morphine withdrawal.
PLoS One. 2020;15:e0231721.
PubMed Abstract available

JEONG DW, Lee B, Heo S, Oh Y, et al
Two genes involved in clindamycin resistance of Bacillus licheniformis and Bacillus paralicheniformis identified by comparative genomic analysis.
PLoS One. 2020;15:e0231274.
PubMed Abstract available

BRUMFIELD KD, Hasan NA, Leddy MB, Cotruvo JA, et al
A comparative analysis of drinking water employing metagenomics.
PLoS One. 2020;15:e0231210.
PubMed Abstract available

KAUR K, Khatri I, Akhtar A, Subramanian S, et al
Metagenomics analysis reveals features unique to Indian distal gut microbiota.
PLoS One. 2020;15:e0231197.
PubMed Abstract available

ZACZEK-MOCZYDLOWSKA MA, Young GK, Trudgett J, Plahe C, et al
Phage cocktail containing Podoviridae and Myoviridae bacteriophages inhibits the growth of Pectobacterium spp. under in vitro and in vivo conditions.
PLoS One. 2020;15:e0230842.
PubMed Abstract available

ZYTNICKI M, Gaspin C
mmannot: How to improve small-RNA annotation?
PLoS One. 2020;15:e0231738.
PubMed Abstract available

DEL VALLE JC, Herman JA, Whittall JB
Genome skimming and microsatellite analysis reveal contrasting patterns of genetic diversity in a rare sandhill endemic (Erysimum teretifolium, Brassicaceae).
PLoS One. 2020;15:e0227523.
PubMed Abstract available

JACQUES CN, Hulbert AK, Westenskow S, Neff MM, et al
Production location of the gelling agent Phytagel has a significant impact on Arabidopsis thaliana seedling phenotypic analysis.
PLoS One. 2020;15:e0228515.
PubMed Abstract available

RUFF TM, Marston EJ, Eagle JD, Sthapit SR, et al
Genotyping by multiplexed sequencing (GMS): A customizable platform for genomic selection.
PLoS One. 2020;15:e0229207.
PubMed Abstract available

LY SN, Garavito A, De Block P, Asselman P, et al
Chloroplast genomes of Rubiaceae: Comparative genomics and molecular phylogeny in subfamily Ixoroideae.
PLoS One. 2020;15:e0232295.
PubMed Abstract available

HAM-DUENAS JG, Canales-Del-Castillo R, Voelker G, Ruvalcaba-Ortega I, et al
Adaptive genetic diversity and evidence of population genetic structure in the endangered Sierra Madre Sparrow (Xenospiza baileyi).
PLoS One. 2020;15:e0232282.
PubMed Abstract available

NORRELL AE, Jones KL, Saillant EA
Development and characterization of genomic resources for a non-model marine teleost, the red snapper (Lutjanus campechanus, Lutjanidae): Construction of a high-density linkage map, anchoring of genome contigs and comparative genomic analysis.
PLoS One. 2020;15:e0232402.
PubMed Abstract available

ANGEBAULT C, Payen M, Woerther PL, Rodriguez C, et al
Combined bacterial and fungal targeted amplicon sequencing of respiratory samples: Does the DNA extraction method matter?
PLoS One. 2020;15:e0232215.
PubMed Abstract available

ITOKAWA K, Hu J, Sukehiro N, Tsuda Y, et al
Genetic analysis of Aedes aegypti captured at two international airports serving to the Greater Tokyo Area during 2012-2015.
PLoS One. 2020;15:e0232192.
PubMed Abstract available

NAKANO D, Kawaguchi T, Iwamoto H, Hayakawa M, et al
Effects of canagliflozin on growth and metabolic reprograming in hepatocellular carcinoma cells: Multi-omics analysis of metabolomics and absolute quantification proteomics (iMPAQT).
PLoS One. 2020;15:e0232283.
PubMed Abstract available

ZHAO H, Beck B, Fuller A, Peatman E, et al
EasyParallel: A GUI platform for parallelization of STRUCTURE and NEWHYBRIDS analyses.
PLoS One. 2020;15:e0232110.
PubMed Abstract available

ENDO C, Watanabe K
Morphological variation associated with trophic niche expansion within a lake population of a benthic fish.
PLoS One. 2020;15:e0232114.
PubMed Abstract available

WANG H, Xie Y, Zhang H, Jin J, et al
Quantitative proteomic analysis reveals the influence of plantaricin BM-1 on metabolic pathways and peptidoglycan synthesis in Escherichia coli K12.
PLoS One. 2020;15:e0231975.
PubMed Abstract available

SMITH JM, Lathara M, Wright H, Hill B, et al
Advancing clinical cohort selection with genomics analysis on a distributed platform.
PLoS One. 2020;15:e0231826.
PubMed Abstract available

EXNER EC, Geurts AM, Hoffmann BR, Casati M, et al
Interaction between Mas1 and AT1RA contributes to enhancement of skeletal muscle angiogenesis by angiotensin-(1-7) in Dahl salt-sensitive rats.
PLoS One. 2020;15:e0232067.
PubMed Abstract available

MANENZHE RI, Dube FS, Wright M, Lennard K, et al
Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing.
PLoS One. 2020;15:e0231887.
PubMed Abstract available

CHITTEM K, Yajima WR, Goswami RS, Del Rio Mendoza LE, et al
Transcriptome analysis of the plant pathogen Sclerotinia sclerotiorum interaction with resistant and susceptible canola (Brassica napus) lines.
PLoS One. 2020;15:e0229844.
PubMed Abstract available

THORNE MAS, Britovsek NK, Hawkins L, Lilley KS, et al
Proteomics of intracellular freezing survival.
PLoS One. 2020;15:e0233048.
PubMed Abstract available

KREDENS KV, Martins JV, Dordal OB, Ferrandin M, et al
Vertical lossless genomic data compression tools for assembled genomes: A systematic literature review.
PLoS One. 2020;15:e0232942.
PubMed Abstract available

ROJAS LA, Scully E, Enders L, Timm A, et al
Comparative transcriptomics of Diuraphis noxia and Schizaphis graminum fed wheat plants containing different aphid-resistance genes.
PLoS One. 2020;15:e0233077.
PubMed Abstract available

STRIJK JS, Binh HT, Ngoc NV, Pereira JT, et al
Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea.
PLoS One. 2020;15:e0232936.
PubMed Abstract available

LARUPA SANTOS J, Rodriguez I, S Olesen M, Hjorth Bentzen B, et al
Investigating gene-microRNA networks in atrial fibrillation patients with mitral valve regurgitation.
PLoS One. 2020;15:e0232719.
PubMed Abstract available

DAEMI-SAEIDABAD M, Shojaeiyan A, Vivian-Smith A, Stenoien HK, et al
The taxonomic significance of ddRADseq based microsatellite markers in the closely related species of Heracleum (Apiaceae).
PLoS One. 2020;15:e0232471.
PubMed Abstract available

MELO DCM, Lira SMA, Moreira APB, Freitas L, et al
Genetic diversity and connectivity of Flaccisagitta enflata (Chaetognatha: Sagittidae) in the tropical Atlantic ocean (northeastern Brazil).
PLoS One. 2020;15:e0231574.
PubMed Abstract available

LI J, Li J, Zhao WG, Sun HD, et al
Comprehensive proteomics and functional annotation of mouse brown adipose tissue.
PLoS One. 2020;15:e0232084.
PubMed Abstract available

RINALDI J, Sokol ES, Hartmaier RJ, Trabucco SE, et al
The genomic landscape of metastatic breast cancer: Insights from 11,000 tumors.
PLoS One. 2020;15:e0231999.
PubMed Abstract available

WOOD DA, Rose JP, Halstead BJ, Stoelting RE, et al
Combining genetic and demographic monitoring better informs conservation of an endangered urban snake.
PLoS One. 2020;15:e0231744.
PubMed Abstract available

FANG H, Liu H, Ma R, Liu Y, et al
Genome-wide assessment of population structure and genetic diversity of Chinese Lou onion using specific length amplified fragment (SLAF) sequencing.
PLoS One. 2020;15:e0231753.
PubMed Abstract available

CAI L, Tong J, Zhang Z, Zhang Y, et al
Staphylococcus aureus-induced proteomic changes in the mammary tissue of rats: A TMT-based study.
PLoS One. 2020;15:e0231168.
PubMed Abstract available

HONG JY, Kim JH
PG-path: Modeling and personalizing pharmacogenomics-based pathways.
PLoS One. 2020;15:e0230950.
PubMed Abstract available

BAI H, Sun K, Wu JH, Zhong ZH, et al
Proteomic and metabolomic characterization of cardiac tissue in acute myocardial ischemia injury rats.
PLoS One. 2020;15:e0231797.
PubMed Abstract available

AGARWAL A, Park S, Ha S, Kwon JS, et al
Quantitative mass spectrometric analysis of the mouse cerebral cortex after ischemic stroke.
PLoS One. 2020;15:e0231978.
PubMed Abstract available

ALOMAIRI J, Molitor AM, Sadouni N, Hussain S, et al
Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene.
PLoS One. 2020;15:e0233191.
PubMed Abstract available

OKORIE-KANU OJ, Anyanwu MU, Ezenduka EV, Mgbeahuruike AC, et al
Molecular epidemiology, genetic diversity and antimicrobial resistance of Staphylococcus aureus isolated from chicken and pig carcasses, and carcass handlers.
PLoS One. 2020;15:e0232913.
PubMed Abstract available

CHANTZI E, Neidlin M, Macheras GA, Alexopoulos LG, et al
COMBSecretomics: A pragmatic methodological framework for higher-order drug combination analysis using secretomics.
PLoS One. 2020;15:e0232989.
PubMed Abstract available

TSAI HY, Cericola F, Edriss V, Andersen JR, et al
Use of multiple traits genomic prediction, genotype by environment interactions and spatial effect to improve prediction accuracy in yield data.
PLoS One. 2020;15:e0232665.
PubMed Abstract available

ULLRICH T, Weirich S, Jeltsch A
Development of an epigenetic tetracycline sensor system based on DNA methylation.
PLoS One. 2020;15:e0232701.
PubMed Abstract available

KAEWSEEKHAO B, Roytrakul S, Yingchutrakul Y, Salao K, et al
Proteomic analysis of infected primary human leucocytes revealed PSTK as potential treatment-monitoring marker for active and latent tuberculosis.
PLoS One. 2020;15:e0231834.
PubMed Abstract available

ROUDNICKY P, Potesil D, Zdrahal Z, Gelnar M, et al
Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea).
PLoS One. 2020;15:e0231681.
PubMed Abstract available

WANG H, Lu Z, Bao Y, Yang Y, et al
Clinical diagnostic application of metagenomic next-generation sequencing in children with severe nonresponding pneumonia.
PLoS One. 2020;15:e0232610.
PubMed Abstract available

CHEN R, Lin J
Identification of feature risk pathways of smoking-induced lung cancer based on SVM.
PLoS One. 2020;15:e0233445.
PubMed Abstract available

VAN JAD, Clotet-Freixas S, Hauschild AC, Batruch I, et al
Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes.
PLoS One. 2020;15:e0233639.
PubMed Abstract available

SWANSON KM, Zhu Y, Rojas RL, St Sauver JL, et al
Comparing outcomes and costs among warfarin-sensitive patients versus warfarin-insensitive patients using The Right Drug, Right Dose, Right Time: Using genomic data to individualize treatment (RIGHT) 10K warfarin cohort.
PLoS One. 2020;15:e0233316.
PubMed Abstract available

WANG XY, Wang MM, Chen C, Wang XQ, et al
Genetic variation and phylogeographic structure of Spodoptera exigua in western China based on mitochondrial DNA and microsatellite markers.
PLoS One. 2020;15:e0233133.
PubMed Abstract available

MUKOLWE LD, Odongo DO, Byaruhanga C, Snyman LP, et al
Analysis of p67 allelic sequences reveals a subtype of allele type 1 unique to buffalo-derived Theileria parva parasites from southern Africa.
PLoS One. 2020;15:e0231434.
PubMed Abstract available

SARKES A, Fu H, Feindel D, Harding M, et al
Development and evaluation of a loop-mediated isothermal amplification (LAMP) assay for the detection of Tomato brown rugose fruit virus (ToBRFV).
PLoS One. 2020;15:e0230403.
PubMed Abstract available

KUMAR SH, Athimoolam K, Suraj M, Das Christu Das MS, et al
Comprehensive genetic analysis of 961 unrelated Duchenne Muscular Dystrophy patients: Focus on diagnosis, prevention and therapeutic possibilities.
PLoS One. 2020;15:e0232654.
PubMed Abstract available

KATAM R, Shokri S, Murthy N, Singh SK, et al
Proteomics, physiological, and biochemical analysis of cross tolerance mechanisms in response to heat and water stresses in soybean.
PLoS One. 2020;15:e0233905.
PubMed Abstract available

EASTERLING KA, Pitra NJ, Morcol TB, Aquino JR, et al
Identification of tandem repeat families from long-read sequences of Humulus lupulus.
PLoS One. 2020;15:e0233971.
PubMed Abstract available

BAULIN EF, Kulakovskiy IV, Roytberg MA, Astakhova TV, et al
Brain-related genes are specifically enriched with long phase 1 introns.
PLoS One. 2020;15:e0233978.
PubMed Abstract available

MACAGNO A, Athanasiou A, Wittig A, Huber R, et al
Analytical performance of thrombospondin-1 and cathepsin D immunoassays part of a novel CE-IVD marked test as an aid in the diagnosis of prostate cancer.
PLoS One. 2020;15:e0233442.
PubMed Abstract available

PAIJMANS JLA, Barlow A, Henneberger K, Fickel J, et al
Ancestral mitogenome capture of the Southeast Asian banded linsang.
PLoS One. 2020;15:e0234385.
PubMed Abstract available

RUMBOU A, Candresse T, Marais A, Svanella-Dumas L, et al
Unravelling the virome in birch: RNA-Seq reveals a complex of known and novel viruses.
PLoS One. 2020;15:e0221834.
PubMed Abstract available

TODA Y, Wakatsuki H, Aoike T, Kajiya-Kanegae H, et al
Predicting biomass of rice with intermediate traits: Modeling method combining crop growth models and genomic prediction models.
PLoS One. 2020;15:e0233951.
PubMed Abstract available

WOOD D, Besnard G, Beerling DJ, Osborne CP, et al
Phylogenomics indicates the "living fossil" Isoetes diversified in the Cenozoic.
PLoS One. 2020;15:e0227525.
PubMed Abstract available

HILLMAN RT, Cardnell R, Fujimoto J, Lee WC, et al
Comparative genomics of high grade neuroendocrine carcinoma of the cervix.
PLoS One. 2020;15:e0234505.
PubMed Abstract available

YADAV P, Kumar A, Hussain SA, Gupta SK, et al
Evaluation of the effect of longitudinal connectivity in population genetic structure of endangered golden mahseer, Tor putitora (Cyprinidae), in Himalayan rivers: Implications for its conservation.
PLoS One. 2020;15:e0234377.
PubMed Abstract available

REMON J, Swalduz A, Planchard D, Ortiz-Cuaran S, et al
Outcomes in oncogenic-addicted advanced NSCLC patients with actionable mutations identified by liquid biopsy genomic profiling using a tagged amplicon-based NGS assay.
PLoS One. 2020;15:e0234302.
PubMed Abstract available

HINDERER EW 3RD, Moseley HNB
GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts.
PLoS One. 2020;15:e0233311.
PubMed Abstract available

VIKAL Y, Kaur A, Jindal J, Kaur K, et al
Identification of genomic regions associated with shoot fly resistance in maize and their syntenic relationships in the sorghum genome.
PLoS One. 2020;15:e0234335.
PubMed Abstract available

WANG S, Yan Z, Wang P, Zheng X, et al
Comparative metagenomics reveals the microbial diversity and metabolic potentials in the sediments and surrounding seawaters of Qinhuangdao mariculture area.
PLoS One. 2020;15:e0234128.
PubMed Abstract available

JOYCE WG, Mauser M
New material of named fossil turtles from the Late Jurassic (late Kimmeridgian) of Wattendorf, Germany.
PLoS One. 2020;15:e0233483.
PubMed Abstract available

HERMES TR, Frachetti MD, Voyakin D, Yerlomaeva AS, et al
High mitochondrial diversity of domesticated goats persisted among Bronze and Iron Age pastoralists in the Inner Asian Mountain Corridor.
PLoS One. 2020;15:e0233333.
PubMed Abstract available

KONTOPOULOS I, Penkman K, Mullin VE, Winkelbach L, et al
Screening archaeological bone for palaeogenetic and palaeoproteomic studies.
PLoS One. 2020;15:e0235146.
PubMed Abstract available

BAGNARESI P, Cattivelli L
Ab initio GO-based mining for non-tandem-duplicated functional clusters in three model plant diploid genomes.
PLoS One. 2020;15:e0234782.
PubMed Abstract available

ALMOMANI BA, Al-Sawalha NA, Al-Keilani MS, Aman HA, et al
The difference in knowledge and concerns between healthcare professionals and patients about genetic-related issues: A questionnaire-based study.
PLoS One. 2020;15:e0235001.
PubMed Abstract available

CHANDRASHEKAR DS, Golonka RM, Yeoh BS, Gonzalez DJ, et al
Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer.
PLoS One. 2020;15:e0234726.
PubMed Abstract available

XIE L, Varathan P, Nho K, Saykin AJ, et al
Identification of functionally connected multi-omic biomarkers for Alzheimer's disease using modularity-constrained Lasso.
PLoS One. 2020;15:e0234748.
PubMed Abstract available

VANANI FR, Shabani L, Sabzalian MR, Dehghanian F, et al
Comparative physiological and proteomic analysis indicates lower shock response to drought stress conditions in a self-pollinating perennial ryegrass.
PLoS One. 2020;15:e0234317.
PubMed Abstract available

JACOBS-SERA D, Abad LA, Alvey RM, Anders KR, et al
Genomic diversity of bacteriophages infecting Microbacterium spp.
PLoS One. 2020;15:e0234636.
PubMed Abstract available

PANAHI B, Hejazi MA
Integrative analysis of gene expression and alternative splicing in microalgae grown under heterotrophic condition.
PLoS One. 2020;15:e0234710.
PubMed Abstract available

KHALAF L, Timm A, Chuang WP, Enders L, et al
Modeling Aceria tosichella biotype distribution over geographic space and time.
PLoS One. 2020;15:e0233507.
PubMed Abstract available

TUREK C, Wrobel S, Piwowar M
OmicsON - Integration of omics data with molecular networks and statistical procedures.
PLoS One. 2020;15:e0235398.
PubMed Abstract available

XINQIANG S, Erqin D, Yu Z, Hongtao D, et al
Potential mechanisms of action of celastrol against rheumatoid arthritis: Transcriptomic and proteomic analysis.
PLoS One. 2020;15:e0233814.
PubMed Abstract available

FERNANDO HSD, Hapugoda M, Perera R, Black Iv WC, et al
Mitochondrial metabolic genes provide phylogeographic relationships of global collections of Aedes aegypti (Diptera: Culicidae).
PLoS One. 2020;15:e0235430.
PubMed Abstract available

ONIMARU K, Nishimura O, Kuraku S
Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information.
PLoS One. 2020;15:e0235748.
PubMed Abstract available

LUISI P, Garcia A, Berros JM, Motti JMB, et al
Fine-scale genomic analyses of admixed individuals reveal unrecognized genetic ancestry components in Argentina.
PLoS One. 2020;15:e0233808.
PubMed Abstract available

STEWART-BROWN BB, Vaughn JN, Carter TE Jr, Li Z, et al
Characterizing the impact of an exotic soybean line on elite cultivar development.
PLoS One. 2020;15:e0235434.
PubMed Abstract available

ROSSI NA, Menchaca-Rodriguez A, Antelo R, Wilson B, et al
High levels of population genetic differentiation in the American crocodile (Crocodylus acutus).
PLoS One. 2020;15:e0235288.
PubMed Abstract available

GU S, Milenkovic T
Data-driven network alignment.
PLoS One. 2020;15:e0234978.
PubMed Abstract available

LAZENSKY R, Hunter ME, Moraga Amador D, Al-Khedery B, et al
Investigating the gene expression profiles of rehabilitated Florida manatees (Trichechus manatus latirostris) following red tide exposure.
PLoS One. 2020;15:e0234150.
PubMed Abstract available

LUO J, Ren R, Guo K
The deformation monitoring of foundation pit by back propagation neural network and genetic algorithm and its application in geotechnical engineering.
PLoS One. 2020;15:e0233398.
PubMed Abstract available

AKOHOUE F, Achigan-Dako EG, Sneller C, Van Deynze A, et al
Genetic diversity, SNP-trait associations and genomic selection accuracy in a west African collection of Kersting's groundnut [Macrotyloma geocarpum(Harms) Marechal & Baudet].
PLoS One. 2020;15:e0234769.
PubMed Abstract available

HOLM M, Nummela P, Heiskanen A, Satomaa T, et al
N-glycomic profiling of colorectal cancer according to tumor stage and location.
PLoS One. 2020;15:e0234989.
PubMed Abstract available

VALDES A, Castro-Puyana M, Garcia-Pastor C, Lucio-Cazana FJ, et al
Time-series proteomic study of the response of HK-2 cells to hyperglycemic, hypoxic diabetic-like milieu.
PLoS One. 2020;15:e0235118.
PubMed Abstract available

YADAV C, Smith ML, Yack JE
Transcriptome analysis of a social caterpillar, Drepana arcuata: De novo assembly, functional annotation and developmental analysis.
PLoS One. 2020;15:e0234903.
PubMed Abstract available

SHAMSADDINI A, Dadkhah K, Gillevet PM
BiomMiner: An advanced exploratory microbiome analysis and visualization pipeline.
PLoS One. 2020;15:e0234860.
PubMed Abstract available

TRILLA-FUERTES L, Gamez-Pozo A, Arevalillo JM, Lopez-Vacas R, et al
Bayesian networks established functional differences between breast cancer subtypes.
PLoS One. 2020;15:e0234752.
PubMed Abstract available

SHI X, Long W, Li Y, Deng D, et al
Multi-population genetic algorithm with ER network for solving flexible job shop scheduling problems.
PLoS One. 2020;15:e0233759.
PubMed Abstract available

MARTIN KR, Johnson PTJ, Bowerman J, Li J, et al
Biogeography of the freshwater gastropod, Planorbella trivolvis, in the western United States.
PLoS One. 2020;15:e0235989.
PubMed Abstract available

LAGO-BARCIA D, DaSilva MB, Conti LA, Carbayo F, et al
Areas of endemism of land planarians (Platyhelminthes: Tricladida) in the Southern Atlantic Forest.
PLoS One. 2020;15:e0235949.
PubMed Abstract available

JEON HS, Lee SM, Jung YM, Oh S, et al
Proteomic biomarkers in mid-trimester amniotic fluid associated with adverse pregnancy outcomes in patients with systemic lupus erythematosus.
PLoS One. 2020;15:e0235838.
PubMed Abstract available

LEAL DFDVB, Santana da Silva MN, Fernandes DCRO, Rodrigues JCG, et al
Amerindian genetic ancestry as a risk factor for tuberculosis in an amazonian population.
PLoS One. 2020;15:e0236033.
PubMed Abstract available

VANCUREN SJ, Dos Santos SJ, Hill JE
Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling.
PLoS One. 2020;15:e0235682.
PubMed Abstract available

THOMAS TR, Hofammann D, McKenna BG, I R van der Miesen A, et al
Community attitudes on genetic research of gender identity, sexual orientation, and mental health.
PLoS One. 2020;15:e0235608.
PubMed Abstract available

PRESTON GW, Yang L, Phillips DH, Maier CS, et al
Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications.
PLoS One. 2020;15:e0235263.
PubMed Abstract available

DONG L, Watson J, Cao S, Arregui S, et al
Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections.
PLoS One. 2020;15:e0235328.
PubMed Abstract available

FURFARO LL, Payne MS, Chang BJ
Host range, morphological and genomic characterisation of bacteriophages with activity against clinical Streptococcus agalactiae isolates.
PLoS One. 2020;15:e0235002.
PubMed Abstract available

SUI J, Luan S, Dai P, Fu Q, et al
High accuracy of pooled DNA genotyping by 2b-RAD sequencing in the Pacific white shrimp, Litopenaeus vannamei.
PLoS One. 2020;15:e0236343.
PubMed Abstract available

CAKIR AYDEMIR B, Yuksel Ozmen C, Kibar U, Mutaf F, et al
Salt stress induces endoplasmic reticulum stress-responsive genes in a grapevine rootstock.
PLoS One. 2020;15:e0236424.
PubMed Abstract available

GAZENGEL K, Lebreton L, Lapalu N, Amselem J, et al
pH effect on strain-specific transcriptomes of the take-all fungus.
PLoS One. 2020;15:e0236429.
PubMed Abstract available

NIU B, Martinelli Ii M, Jiao Y, Wang C, et al
Nonspecific cleavages arising from reconstitution of trypsin under mildly acidic conditions.
PLoS One. 2020;15:e0236740.
PubMed Abstract available

CORNEJO-JUAREZ P, Cevallos MA, Castro-Jaimes S, Castillo-Ramirez S, et al
High mortality in an outbreak of multidrug resistant Acinetobacter baumannii infection introduced to an oncological hospital by a patient transferred from a general hospital.
PLoS One. 2020;15:e0234684.
PubMed Abstract available

BAILEY-STEINITZ LJ, Shih YH, Radeke MJ, Coffey PJ, et al
An in vitro model of chronic wounding and its implication for age-related macular degeneration.
PLoS One. 2020;15:e0236298.
PubMed Abstract available

BERG MG, Olivo A, Forberg K, Harris BJ, et al
Advanced molecular surveillance approaches for characterization of blood borne hepatitis viruses.
PLoS One. 2020;15:e0236046.
PubMed Abstract available

SUZUKI Y, Takadate T, Mizuma M, Shima H, et al
Stromal expression of hemopexin is associated with lymph-node metastasis in pancreatic ductal adenocarcinoma.
PLoS One. 2020;15:e0235904.
PubMed Abstract available

ALFARO GF, Novak TE, Rodning SP, Moisa SJ, et al
Preconditioning beef cattle for long-duration transportation stress with rumen-protected methionine supplementation: A nutrigenetics study.
PLoS One. 2020;15:e0235481.
PubMed Abstract available

SILVA PIT, Silva-Junior OB, Resende LV, Sousa VA, et al
A 3K Axiom SNP array from a transcriptome-wide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze.
PLoS One. 2020;15:e0230404.
PubMed Abstract available

SUBRAMANI A, Griggs P, Frantzen N, Mendez J, et al
Intracellular Cryptococcus neoformans disrupts the transcriptome profile of M1- and M2-polarized host macrophages.
PLoS One. 2020;15:e0233818.
PubMed Abstract available

KURUMBANG NP, Vera JM, Hebert AS, Coon JJ, et al
Heterologous expression of a glycosyl hydrolase and cellular reprogramming enable Zymomonas mobilis growth on cellobiose.
PLoS One. 2020;15:e0226235.
PubMed Abstract available

ELAMEEN A, Klutsch CFC, Floystad I, Knudsen GK, et al
Large-scale genetic admixture suggests high dispersal in an insect pest, the apple fruit moth.
PLoS One. 2020;15:e0236509.
PubMed Abstract available

HILDERBRAND RH, Keller SR, Laperriere SM, Santoro AE, et al
Microbial communities can predict the ecological condition of headwater streams.
PLoS One. 2020;15:e0236932.
PubMed Abstract available

NAGOSHI RN, Canarte E, Navarrete B, Pico J, et al
The genetic characterization of fall armyworm populations in Ecuador and its implications to migration and pest management in the northern regions of South America.
PLoS One. 2020;15:e0236759.
PubMed Abstract available

MAYNE B, Tucker AD, Berry O, Jarman S, et al
Lifespan estimation in marine turtles using genomic promoter CpG density.
PLoS One. 2020;15:e0236888.
PubMed Abstract available

STEINERT RE, Rehman A, Souto Lima EJ, Agamennone V, et al
Roux-en-Y gastric bypass surgery changes fungal and bacterial microbiota in morbidly obese patients-A pilot study.
PLoS One. 2020;15:e0236936.
PubMed Abstract available

KUMAR C, Kumar R, Singh SK, Goswami AK, et al
Development of novel g-SSR markers in guava (Psidium guajava L.) cv. Allahabad Safeda and their application in genetic diversity, population structure and cross species transferability studies.
PLoS One. 2020;15:e0237538.
PubMed Abstract available

HE J, Wu XL, Zeng Q, Li H, et al
Genomic mating as sustainable breeding for Chinese indigenous Ningxiang pigs.
PLoS One. 2020;15:e0236629.
PubMed Abstract available

MARINOS G, Kaleta C, Waschina S
Defining the nutritional input for genome-scale metabolic models: A roadmap.
PLoS One. 2020;15:e0236890.
PubMed Abstract available

NOBLE AS, Noe S, Clearwater MJ, Lee CK, et al
A core phyllosphere microbiome exists across distant populations of a tree species indigenous to New Zealand.
PLoS One. 2020;15:e0237079.
PubMed Abstract available

LI DM, Ye YJ, Xu YC, Liu JM, et al
Complete chloroplast genomes of Zingiber montanum and Zingiber zerumbet: Genome structure, comparative and phylogenetic analyses.
PLoS One. 2020;15:e0236590.
PubMed Abstract available

BRUGGEMAN SA, Horvath DP, Fennell AY, Gonzalez-Hernandez JL, et al
Teosinte (Zea mays ssp parviglumis) growth and transcriptomic response to weed stress identifies similarities and differences between varieties and with modern maize varieties.
PLoS One. 2020;15:e0237715.
PubMed Abstract available

ARROYO MUHR LS, Lagheden C, Hassan SS, Kleppe SN, et al
De novo sequence assembly requires bioinformatic checking of chimeric sequences.
PLoS One. 2020;15:e0237455.
PubMed Abstract available

WOODHOUSE R, Li M, Hughes J, Delfosse D, et al
Clinical and analytical validation of FoundationOne Liquid CDx, a novel 324-Gene cfDNA-based comprehensive genomic profiling assay for cancers of solid tumor origin.
PLoS One. 2020;15:e0237802.
PubMed Abstract available

METHE BA, Hiltbrand D, Roach J, Xu W, et al
Functional gene categories differentiate maize leaf drought-related microbial epiphytic communities.
PLoS One. 2020;15:e0237493.
PubMed Abstract available

ZHANG Z, Xiao W, Qiu J, Xin Y, et al
Nystose regulates the response of rice roots to cold stress via multiple signaling pathways: A comparative proteomics analysis.
PLoS One. 2020;15:e0238381.
PubMed Abstract available

CHOI YH, Zhang X, Srinivasamoorthy G, Purdy MA, et al
Transcriptome analysis in rhesus macaques infected with hepatitis E virus genotype 1/3 infections and genotype 1 re-infection.
PLoS One. 2020;15:e0237618.
PubMed Abstract available

CHEN X, Huang S, Jiang M, Chen Y, et al
Genome-wide identification and expression analysis of the SR gene family in longan (Dimocarpus longan Lour.).
PLoS One. 2020;15:e0238032.
PubMed Abstract available

GAAFAR YZA, Ziebell H
Comparative study on three viral enrichment approaches based on RNA extraction for plant virus/viroid detection using high-throughput sequencing.
PLoS One. 2020;15:e0237951.
PubMed Abstract available

PEREZ-RODRIGUEZ S, de Jesus Ramirez-Lira M, Wulff T, Voldbor BG, et al
Enrichment of microsomes from Chinese hamster ovary cells by subcellular fractionation for its use in proteomic analysis.
PLoS One. 2020;15:e0237930.
PubMed Abstract available

CHOI SK, Kim KS, Ranyuk M, Babaev E, et al
Asia-wide phylogeography of wild boar (Sus scrofa) based on mitochondrial DNA and Y-chromosome: Revising the migration routes of wild boar in Asia.
PLoS One. 2020;15:e0238049.
PubMed Abstract available

KWAK GY, Goo E, Jeong H, Hwang I, et al
Adverse effects of adaptive mutation to survive static culture conditions on successful fitness of the rice pathogen Burkholderia glumae in a host.
PLoS One. 2020;15:e0238151.
PubMed Abstract available

HAN R, Wei Y, Xie Y, Liu L, et al
Quantitative phosphoproteomic analysis provides insights into the aluminum-responsiveness of Tamba black soybean.
PLoS One. 2020;15:e0237845.
PubMed Abstract available

HASAN M, Azim KF, Imran MAS, Chowdhury IM, et al
Comprehensive genome based analysis of Vibrio parahaemolyticus for identifying novel drug and vaccine molecules: Subtractive proteomics and vaccinomics approach.
PLoS One. 2020;15:e0237181.
PubMed Abstract available

YUN SA, Son HD, Im HT, Kim SC, et al
Genetic diversity and population structure of the endangered orchid Pelatantheria scolopendrifolia (Orchidaceae) in Korea.
PLoS One. 2020;15:e0237546.
PubMed Abstract available

KORONA D, Nightingale D, Fabre B, Nelson M, et al
Characterisation of protein isoforms encoded by the Drosophila Glycogen Synthase Kinase 3 gene shaggy.
PLoS One. 2020;15:e0236679.
PubMed Abstract available

REN X, Kuan PF
RNAAgeCalc: A multi-tissue transcriptional age calculator.
PLoS One. 2020;15:e0237006.
PubMed Abstract available

DADJO C, Nyende AB, Yao N, Kiplangat N, et al
Genome-wide genetic diversity and population structure of Garcinia kola (Heckel) in Benin using DArT-Seq technology.
PLoS One. 2020;15:e0238984.
PubMed Abstract available

MEISSNER K, Lutter D, von Toerne C, Haile A, et al
Molecular classification of the placebo effect in nausea.
PLoS One. 2020;15:e0238533.
PubMed Abstract available

CRANDALL SG, Gold KM, Jimenez-Gasco MDM, Filgueiras CC, et al
A multi-omics approach to solving problems in plant disease ecology.
PLoS One. 2020;15:e0237975.
PubMed Abstract available

POORMOHAMMADI H, Sardari Zarchi M
Netcombin: An algorithm for constructing optimal phylogenetic network from rooted triplets.
PLoS One. 2020;15:e0227842.
PubMed Abstract available

SONDERTOFT NB, Vogt JK, Arumugam M, Kristensen M, et al
The intestinal microbiome is a co-determinant of the postprandial plasma glucose response.
PLoS One. 2020;15:e0238648.
PubMed Abstract available

CRANDALL H, Kapusta A, Killpack J, Heyrend C, et al
Clinical and molecular epidemiology of invasive Staphylococcus aureus infection in Utah children; continued dominance of MSSA over MRSA.
PLoS One. 2020;15:e0238991.
PubMed Abstract available

CHAN LM, Painter CW, Hill MT, Hibbitts TJ, et al
Phylogeographic structure of the dunes sagebrush lizard, an endemic habitat specialist.
PLoS One. 2020;15:e0238194.
PubMed Abstract available

ZHANG W, Xu S, Shi L, Zhu Z, et al
Construction and analysis of a competing endogenous RNA network to reveal potential prognostic biomarkers for Oral Floor Squamous Cell Carcinoma.
PLoS One. 2020;15:e0238420.
PubMed Abstract available

BODEWES R, Reijnen L, Kerkhof J, Cremer J, et al
Molecular epidemiology of mumps viruses in the Netherlands, 2017-2019.
PLoS One. 2020;15:e0233143.
PubMed Abstract available

CAO H, He X, Du J, Zhang R, et al
Time-series transcriptomic analysis reveals novel gene modules that control theanine biosynthesis in tea plant (Camellia sinensis).
PLoS One. 2020;15:e0238175.
PubMed Abstract available

ZHA W, You A
Comparative iTRAQ proteomic profiling of proteins associated with the adaptation of brown planthopper to moderately resistant vs. susceptible rice varieties.
PLoS One. 2020;15:e0238549.
PubMed Abstract available

GUERREIRO EM, Ovstebo R, Thiede B, Costea DE, et al
Cancer cell line-specific protein profiles in extracellular vesicles identified by proteomics.
PLoS One. 2020;15:e0238591.
PubMed Abstract available

BARTLETT JMS, Bayani J, Kornaga EN, Danaher P, et al
Computational approaches to support comparative analysis of multiparametric tests: Modelling versus Training.
PLoS One. 2020;15:e0238593.
PubMed Abstract available

AKGUN E, Tuzuner MB, Sahin B, Kilercik M, et al
Proteins associated with neutrophil degranulation are upregulated in nasopharyngeal swabs from SARS-CoV-2 patients.
PLoS One. 2020;15:e0240012.
PubMed Abstract available

GHODOUSI A, Borroni E, Peracchi M, Palu G, et al
Genomic analysis of cardiac surgery-associated Mycobacterium chimaera infections in Italy.
PLoS One. 2020;15:e0239273.
PubMed Abstract available

HEBERT L, Hillman P, Baker C, Brown M, et al
Burden of rare deleterious variants in WNT signaling genes among 511 myelomeningocele patients.
PLoS One. 2020;15:e0239083.
PubMed Abstract available

DUMIDAE A, Janthu P, Subkrasae C, Pumidonming W, et al
Genetic analysis of Cryptozona siamensis (Stylommatophora, Ariophantidae) populations in Thailand using the mitochondrial 16S rRNA and COI sequences.
PLoS One. 2020;15:e0239264.
PubMed Abstract available

PLANT EP, Manukyan H, Laassri M, Ye Z, et al
Insights from the comparison of genomic variants from two influenza B viruses grown in the presence of human antibodies in cell culture.
PLoS One. 2020;15:e0239015.
PubMed Abstract available

ISHIKAWA Y, Nakai K
A hypothetical trivalent epigenetic code that affects the nature of human ESCs.
PLoS One. 2020;15:e0238742.
PubMed Abstract available

BARKER H, Parkkila S
Bioinformatic characterization of angiotensin-converting enzyme 2, the entry receptor for SARS-CoV-2.
PLoS One. 2020;15:e0240647.
PubMed Abstract available

PAVLIKOVA N, Sramek J, Jelinek M, Halada P, et al
Markers of acute toxicity of DDT exposure in pancreatic beta-cells determined by a proteomic approach.
PLoS One. 2020;15:e0229430.
PubMed Abstract available

GUTIERREZ M, Smith R
XFlow: An algorithm for extracting ion chromatograms.
PLoS One. 2020;15:e0227659.
PubMed Abstract available

SUPELETO FA, Santos BF, Basilio LA, Aguiar AP, et al
Species delimitation, environmental cline and phylogeny for a new Neotropical genus of Cryptinae (Ichneumonidae).
PLoS One. 2020;15:e0237233.
PubMed Abstract available

HADI S, Andayani N, Muttaqin E, Simeon BM, et al
Genetic connectivity of the scalloped hammerhead shark Sphyrna lewini across Indonesia and the Western Indian Ocean.
PLoS One. 2020;15:e0230763.
PubMed Abstract available

SILVA RRD, Vilela B, Silva DP, Andrade AFA, et al
The role of ecological niche evolution on diversification patterns of birds distinctly distributed between the Amazonia and Atlantic rainforests.
PLoS One. 2020;15:e0238729.
PubMed Abstract available

ABUIN JM, Lopes N, Ferreira L, Pena TF, et al
Big Data in metagenomics: Apache Spark vs MPI.
PLoS One. 2020;15:e0239741.
PubMed Abstract available

DU J, Xia J, Li S, Shen Y, et al
Evolutionary dynamics and transmission patterns of Newcastle disease virus in China through Bayesian phylogeographical analysis.
PLoS One. 2020;15:e0239809.
PubMed Abstract available

SEO HS, Kim SH, Kim SC
Chloroplast DNA insights into the phylogenetic position and anagenetic speciation of Phedimus takesimensis (Crassulaceae) on Ulleung and Dokdo Islands, Korea.
PLoS One. 2020;15:e0239734.
PubMed Abstract available

AFRIN K, Iquebal AS, Karimi M, Souris A, et al
Directionally dependent multi-view clustering using copula model.
PLoS One. 2020;15:e0238996.
PubMed Abstract available

KETEMA S, Tesfaye B, Keneni G, Amsalu Fenta B, et al
DArTSeq SNP-based markers revealed high genetic diversity and structured population in Ethiopian cowpea [Vigna unguiculata (L.) Walp] germplasms.
PLoS One. 2020;15:e0239122.
PubMed Abstract available

SASAKI N, Iwaya T, Chiba T, Fujita M, et al
Analysis of mutational and proteomic heterogeneity of gastric cancer suggests an effective pipeline to monitor post-treatment tumor burden using circulating tumor DNA.
PLoS One. 2020;15:e0239966.
PubMed Abstract available

MAKOUKJI J, El-Sitt S, Makhoul NJ, Soueid J, et al
Sex differences in gene expression with galactosylceramide treatment in Cln3Deltaex7/8 mice.
PLoS One. 2020;15:e0239537.
PubMed Abstract available

TONIONE MA, Bi K, Tsutsui ND
Transcriptomic signatures of cold adaptation and heat stress in the winter ant (Prenolepis imparis).
PLoS One. 2020;15:e0239558.
PubMed Abstract available

FADDA M, Chappuis PO, Katapodi MC, Pagani O, et al
Physicians communicating with women at genetic risk of breast and ovarian cancer: Are we in the middle of the ford between contradictory messages and unshared decision making?
PLoS One. 2020;15:e0240054.
PubMed Abstract available

BLANCO JC, Ballesteros F, Palomero G, Lopez-Bao JV, et al
Not exodus, but population increase and gene flow restoration in Cantabrian brown bear (Ursus arctos) subpopulations. Comment on Gregorio et al. 2020.
PLoS One. 2020;15:e0240698.
PubMed Abstract available

BRITO PM, Figueiredo FJ, Leal MEC
A revision of Laeliichthys ancestralis Santos, 1985 (Teleostei: Osteoglossomorpha) from the Lower Cretaceous of Brazil: Phylogenetic relationships and biogeographical implications.
PLoS One. 2020;15:e0241009.
PubMed Abstract available

BO C, Geng X, Zhang J, Sai L, et al
Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology.
PLoS One. 2020;15:e0241310.
PubMed Abstract available

SUNDMAN AS, Pertille F, Lehmann Coutinho L, Jazin E, et al
DNA methylation in canine brains is related to domestication and dog-breed formation.
PLoS One. 2020;15:e0240787.
PubMed Abstract available

WU B, Jiang S, Wang X, Zhong S, et al
Identification of driver genes and key pathways of non-functional pituitary adenomas predicts the therapeutic effect of STO-609.
PLoS One. 2020;15:e0240230.
PubMed Abstract available

PERLEJEWSKI K, Bukowska-Osko I, Rydzanicz M, Dzieciatkowski T, et al
Search for viral agents in cerebrospinal fluid in patients with multiple sclerosis using real-time PCR and metagenomics.
PLoS One. 2020;15:e0240601.
PubMed Abstract available

KO G, Jang I, Koo N, Park SJ, et al
Prometheus, an omics portal for interkingdom comparative genomic analyses.
PLoS One. 2020;15:e0240191.
PubMed Abstract available

LIU L, Wang R, Ding H, Tian L, et al
The utility of urinary biomarker panel in predicting renal pathology and treatment response in Chinese lupus nephritis patients.
PLoS One. 2020;15:e0240942.
PubMed Abstract available

ABSHIRU NA, Sikora JW, Camarillo JM, Morris JA, et al
Targeted detection and quantitation of histone modifications from 1,000 cells.
PLoS One. 2020;15:e0240829.
PubMed Abstract available

IVANOV DK, Bostelmann G, Lan-Leung B, Williams J, et al
A novel computational approach for predicting complex phenotypes in Drosophila (starvation-sensitive and sterile) by deriving their gene expression signatures from public data.
PLoS One. 2020;15:e0240824.
PubMed Abstract available

LEBEDEV A, Pasechnik O, Ozhmegova E, Antonova A, et al
Prevalence and spatiotemporal dynamics of HIV-1 Circulating Recombinant Form 03_AB (CRF03_AB) in the Former Soviet Union countries.
PLoS One. 2020;15:e0241269.
PubMed Abstract available

VISHNUKIRAN T, Neeraja CN, Jaldhani V, Vijayalakshmi P, et al
A major pleiotropic QTL identified for yield components and nitrogen content in rice (Oryza sativa L.) under differential nitrogen field conditions.
PLoS One. 2020;15:e0240854.
PubMed Abstract available

HIRAI N, Kasahara K, Nakano R, Ogawa Y, et al
Clinical characteristics and molecular epidemiology of invasive Streptococcus agalactiae infections between 2007 and 2016 in Nara, Japan.
PLoS One. 2020;15:e0240590.
PubMed Abstract available

MILUCKY J, Pondo T, Gregory CJ, Iuliano D, et al
The epidemiology and estimated etiology of pathogens detected from the upper respiratory tract of adults with severe acute respiratory infections in multiple countries, 2014-2015.
PLoS One. 2020;15:e0240309.
PubMed Abstract available

GAO Y, Zhu C, Li K, Cheng X, et al
Comparative proteomics analysis of dietary restriction in Drosophila.
PLoS One. 2020;15:e0240596.
PubMed Abstract available

MOGAKA JJO, Chimbari MJ
The mediating effects of public genomic knowledge in precision medicine implementation: A structural equation model approach.
PLoS One. 2020;15:e0240585.
PubMed Abstract available

INGASIA LAO, Kostaki EG, Paraskevis D, Kramvis A, et al
Global and regional dispersal patterns of hepatitis B virus genotype E from and in Africa: A full-genome molecular analysis.
PLoS One. 2020;15:e0240375.
PubMed Abstract available

KRISHNAKUMARIAMMA K, Ellappan K, Muthuraj M, Tamilarasu K, et al
Molecular diagnosis, genetic diversity and drug sensitivity patterns of Mycobacterium tuberculosis strains isolated from tuberculous meningitis patients at a tertiary care hospital in South India.
PLoS One. 2020;15:e0240257.
PubMed Abstract available

CHEN ZY, Xie DF, Liu ZY, Zhong YQ, et al
Identification of the significant pathways of Banxia Houpu decoction in the treatment of depression based on network pharmacology.
PLoS One. 2020;15:e0239843.
PubMed Abstract available

DANG H, Polineni D, Pace RG, Stonebraker JR, et al
Mining GWAS and eQTL data for CF lung disease modifiers by gene expression imputation.
PLoS One. 2020;15:e0239189.
PubMed Abstract available

DU S, Li J, Bian N
A compression method for DNA.
PLoS One. 2020;15:e0238220.
PubMed Abstract available

KUSCH N, Schuppert A
Two-step multi-omics modelling of drug sensitivity in cancer cell lines to identify driving mechanisms.
PLoS One. 2020;15:e0238961.
PubMed Abstract available

WANG C, Ma X, Ren M, Tang L, et al
Genetic diversity and population structure in the endangered tree Hopea hainanensis (Dipterocarpaceae) on Hainan Island, China.
PLoS One. 2020;15:e0241452.
PubMed Abstract available

STERN F, Delaval M, Kampourakis K, Muller A, et al
Implicit associations of teleology and essentialism concepts with genetics concepts among secondary school students.
PLoS One. 2020;15:e0242189.
PubMed Abstract available

VEZINA B, Petit GA, Martin JL, Halili MA, et al
Prediction of Burkholderia pseudomallei DsbA substrates identifies potential virulence factors and vaccine targets.
PLoS One. 2020;15:e0241306.
PubMed Abstract available

ALKANDARI SA, Bhardwaj RG, Ellepola A, Karched M, et al
Proteomics of extracellular vesicles produced by Granulicatella adiacens, which causes infective endocarditis.
PLoS One. 2020;15:e0227657.
PubMed Abstract available

ZHAO C, Ni H, Zhao L, Zhou L, et al
High nitrogen concentration alter microbial community in Allium fistulosum rhizosphere.
PLoS One. 2020;15:e0241371.
PubMed Abstract available

DAGTEKIN D, Sahan EA, Denk T, Kose N, et al
Past, present and future distributions of Oriental beech (Fagus orientalis) under climate change projections.
PLoS One. 2020;15:e0242280.
PubMed Abstract available

HUANG B, Gan L, Chen D, Zhang Y, et al
Integration of small RNA, degradome and proteome sequencing in Oryza sativa reveals a delayed senescence network in tetraploid rice seed.
PLoS One. 2020;15:e0242260.
PubMed Abstract available

MO W, Ding Y, Zhao S, Zou D, et al
Identification of a 6-gene signature for the survival prediction of breast cancer patients based on integrated multi-omics data analysis.
PLoS One. 2020;15:e0241924.
PubMed Abstract available

SAJULGA R, Easterly C, Riffle M, Mesuere B, et al
Survey of metaproteomics software tools for functional microbiome analysis.
PLoS One. 2020;15:e0241503.
PubMed Abstract available

OU J, Liu H, Nirala NK, Stukalov A, et al
dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data.
PLoS One. 2020;15:e0242030.
PubMed Abstract available

SANGKAEW O, Phaonakrop N, Roytrakul S, Yompakdee C, et al
Metaproteomic investigation of functional insight into special defined microbial starter on production of fermented rice with melanogenesis inhibition activity.
PLoS One. 2020;15:e0241819.
PubMed Abstract available

WEBB JL, Bries AE, Vogel B, Carrillo C, et al
Whole egg consumption increases gene expression within the glutathione pathway in the liver of Zucker Diabetic Fatty rats.
PLoS One. 2020;15:e0240885.
PubMed Abstract available

LIU EM, Luna A, Dong G, Sander C, et al
netboxr: Automated discovery of biological process modules by network analysis in R.
PLoS One. 2020;15:e0234669.
PubMed Abstract available

DEY SK, Sharif N, Sarkar OS, Sarkar MK, et al
Molecular epidemiology and surveillance of circulating rotavirus among children with gastroenteritis in Bangladesh during 2014-2019.
PLoS One. 2020;15:e0242813.
PubMed Abstract available

TURK S, Turk C, Akbar MW, Kucukkaraduman B, et al
Renin angiotensin system genes are biomarkers for personalized treatment of acute myeloid leukemia with Doxorubicin as well as etoposide.
PLoS One. 2020;15:e0242497.
PubMed Abstract available

LI J, Ye GY, Liu HL, Wang ZH, et al
Complete chloroplast genomes of three important species, Abelmoschus moschatus, A. manihot and A. sagittifolius: Genome structures, mutational hotspots, comparative and phylogenetic analysis in Malvaceae.
PLoS One. 2020;15:e0242591.
PubMed Abstract available

FENG X, Lai RL, Gao MX, Chen WG, et al
Characterization and complete genome sequences of two novel variants of the family Closteroviridae from Chinese kiwifruit.
PLoS One. 2020;15:e0242362.
PubMed Abstract available

NGAMNIYOM A
Molecular assessment and transcriptome profiling of wild fish populations of Oryzias mekongensis and O. songkhramensis (Adrianichthyidae: Beloniformes) from Thailand.
PLoS One. 2020;15:e0242382.
PubMed Abstract available

GALATAUD J, Delatte H, Techer MA, Simiand C, et al
When European meets African honeybees (Apis mellifera L.) in the tropics: Morphological changes related to genetics in Mauritius Island (South-West Indian Ocean).
PLoS One. 2020;15:e0242053.
PubMed Abstract available

WINNARD PT JR, Vesuna F, Muthukumar S, Raman V, et al
Divergent organ-specific isogenic metastatic cell lines identified using multi-omics exhibit differential drug sensitivity.
PLoS One. 2020;15:e0242384.
PubMed Abstract available

DOAN TH, Yen-Nicolay S, Bernet-Camard MF, Martin-Verstraete I, et al
Impact of subinhibitory concentrations of metronidazole on proteome of Clostridioides difficile strains with different levels of susceptibility.
PLoS One. 2020;15:e0241903.
PubMed Abstract available

HIPFNER JM, Prill MM, Studholme KR, Domalik AD, et al
Geolocator tagging links distributions in the non-breeding season to population genetic structure in a sentinel North Pacific seabird.
PLoS One. 2020;15:e0240056.
PubMed Abstract available

DE SOUSA-D'AURIA C, Constantinesco-Becker F, Constant P, Tropis M, et al
Genome-wide identification of novel genes involved in Corynebacteriales cell envelope biogenesis using Corynebacterium glutamicum as a model.
PLoS One. 2020;15:e0240497.
PubMed Abstract available

SCHULZ C, Almaas E
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.
PLoS One. 2020;15:e0240953.
PubMed Abstract available

ARNADOTTIR SS, Mattesen TB, Vang S, Madsen MR, et al
Transcriptomic and proteomic intra-tumor heterogeneity of colorectal cancer varies depending on tumor location within the colorectum.
PLoS One. 2020;15:e0241148.
PubMed Abstract available

THORSON JLM, Beck D, Ben Maamar M, Nilsson EE, et al
Epigenome-wide association study for atrazine induced transgenerational DNA methylation and histone retention sperm epigenetic biomarkers for disease.
PLoS One. 2020;15:e0239380.
PubMed Abstract available

YAMAMOTO H, Uchida Y, Chiba T, Kurimoto R, et al
Transcriptome analysis of sevoflurane exposure effects at the different brain regions.
PLoS One. 2020;15:e0236771.
PubMed Abstract available

SHI Y, Gong W, Gong X, Wang P, et al
Genome-wide DNA methylation analysis of breast cancer MCF-7 / Taxol cells with MeDIP-Seq.
PLoS One. 2020;15:e0241515.
PubMed Abstract available

HART RK, Prlic A
SeqRepo: A system for managing local collections of biological sequences.
PLoS One. 2020;15:e0239883.
PubMed Abstract available

MIN K, Yi G, Lee JG, Kim HS, et al
Comparative transcriptome and metabolome analyses of two strawberry cultivars with different storability.
PLoS One. 2020;15:e0242556.
PubMed Abstract available

LEE HJ, Chung YJ, Jang S, Seo DW, et al
Genome-wide identification of major genes and genomic prediction using high-density and text-mined gene-based SNP panels in Hanwoo (Korean cattle).
PLoS One. 2020;15:e0241848.
PubMed Abstract available

KIM JH, Park JS, Lee CY, Jeong MG, et al
Dissecting seed pigmentation-associated genomic loci and genes by employing dual approaches of reference-based and k-mer-based GWAS with 438 Glycine accessions.
PLoS One. 2020;15:e0243085.
PubMed Abstract available

KRUTZFELDT LM, Schubach M, Kircher M
The impact of different negative training data on regulatory sequence predictions.
PLoS One. 2020;15:e0237412.
PubMed Abstract available

REILLY J, Gallagher L, Leader G, Shen S, et al
Coupling of autism genes to tissue-wide expression and dysfunction of synapse, calcium signalling and transcriptional regulation.
PLoS One. 2020;15:e0242773.
PubMed Abstract available

DE LOS CAMPOS G, Pook T, Gonzalez-Reymundez A, Simianer H, et al
ANOVA-HD: Analysis of variance when both input and output layers are high-dimensional.
PLoS One. 2020;15:e0243251.
PubMed Abstract available

MARTINEZ BARRERA S, Byrum S, Mackintosh SG, Kozubowski L, et al
Registered report protocol: Quantitative analysis of septin Cdc10-associated proteome in Cryptococcus neoformans.
PLoS One. 2020;15:e0242381.
PubMed Abstract available

DUMAIDI K, Qaraqe H, Al-Jawabreh A, Abu-Helu R, et al
Genetic diversity, haplotype analysis, and risk factor assessment of hepatitis A virus isolates from the West Bank, Palestine during the period between 2014 and 2016.
PLoS One. 2020;15:e0240339.
PubMed Abstract available

WONFOR RE, Creevey CJ, Natoli M, Hegarty M, et al
Interaction of preimplantation factor with the global bovine endometrial transcriptome.
PLoS One. 2020;15:e0242874.
PubMed Abstract available

LI H, Liang X, Zhou B, Chen X, et al
A proteomic analysis of peanut seed at different stages of underground development to understand the changes of seed proteins.
PLoS One. 2020;15:e0243132.
PubMed Abstract available

WRIGGLESWORTH DJ, Goonatilleke E, Haydock R, Hughes KR, et al
High-throughput glycomic analyses reveal unique oligosaccharide profiles of canine and feline milk samples.
PLoS One. 2020;15:e0243323.
PubMed Abstract available

EKMAN L, Bagge E, Nyman A, Persson Waller K, et al
A shotgun metagenomic investigation of the microbiota of udder cleft dermatitis in comparison to healthy skin in dairy cows.
PLoS One. 2020;15:e0242880.
PubMed Abstract available

YU G, Zhao W, Shen Y, Zhu P, et al
Metagenomic next generation sequencing for the diagnosis of tuberculosis meningitis: A systematic review and meta-analysis.
PLoS One. 2020;15:e0243161.
PubMed Abstract available

LI Q, Ma C, Tai H, Qiu H, et al
Comparative transcriptome analysis of two rice genotypes differing in their tolerance to saline-alkaline stress.
PLoS One. 2020;15:e0243112.
PubMed Abstract available

NIRAULA PM, Sharma K, McNeece BT, Troell HA, et al
Mitogen activated protein kinase (MAPK)-regulated genes with predicted signal peptides function in the Glycine max defense response to the root pathogenic nematode Heterodera glycines.
PLoS One. 2020;15:e0241678.
PubMed Abstract available

WU Z, Hai E, Di Z, Ma R, et al
Using WGCNA (weighted gene co-expression network analysis) to identify the hub genes of skin hair follicle development in fetus stage of Inner Mongolia cashmere goat.
PLoS One. 2020;15:e0243507.
PubMed Abstract available

DE LEMOS APS, Sacchi CT, Goncalves CR, Camargo CH, et al
Genomic surveillance of Neisseria meningitidis serogroup B invasive strains: Diversity of vaccine antigen types, Brazil, 2016-2018.
PLoS One. 2020;15:e0243375.
PubMed Abstract available

YE J, Li J
First proteomic analysis of the role of lysine acetylation in extensive functions in Solenopsis invicta.
PLoS One. 2020;15:e0243787.
PubMed Abstract available

MILLS C, Muruganujan A, Ebert D, Marconett CN, et al
PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence.
PLoS One. 2020;15:e0243791.
PubMed Abstract available

LENZ M, Schulz A, Koeck T, Rapp S, et al
Missing value imputation in proximity extension assay-based targeted proteomics data.
PLoS One. 2020;15:e0243487.
PubMed Abstract available

LUCIDARME J, Zhu B, Xu L, Bai X, et al
Genomic analysis of the meningococcal ST-4821 complex-Western clade, potential sexual transmission and predicted antibiotic susceptibility and vaccine coverage.
PLoS One. 2020;15:e0243426.
PubMed Abstract available

MAO Y, Zhao Y, Zhang Y, Yang H, et al
In-depth characterization and comparison of the N-glycosylated proteome of two-dimensional- and three-dimensional-cultured breast cancer cells and xenografted tumors.
PLoS One. 2020;15:e0243789.
PubMed Abstract available

ZANDONADI FS, Ferreira SP, Alexandrino AV, Carnielli CM, et al
Periplasm-enriched fractions from Xanthomonas citri subsp. citri type A and X. fuscans subsp. aurantifolii type B present distinct proteomic profiles under in vitro pathogenicity induction.
PLoS One. 2020;15:e0243867.
PubMed Abstract available

FOPA FOMEJU B, Brunel D, Berard A, Rivoal JB, et al
Quick and efficient approach to develop genomic resources in orphan species: Application in Lavandula angustifolia.
PLoS One. 2020;15:e0243853.
PubMed Abstract available

JITTIKOON J, Sangroongruangsri S, Thavorncharoensap M, Chitpim N, et al
Economic impact of medical genetic testing on clinical applications in Thailand.
PLoS One. 2020;15:e0243934.
PubMed Abstract available

BREIDENBACH N, Gailing O, Krutovsky KV
Genetic structure of coast redwood (Sequoia sempervirens [D. Don] Endl.) populations in and outside of the natural distribution range based on nuclear and chloroplast microsatellite markers.
PLoS One. 2020;15:e0243556.
PubMed Abstract available

LARSSON M, Rudqvist N, Spetz J, Shubbar E, et al
Long-term transcriptomic and proteomic effects in Sprague Dawley rat thyroid and plasma after internal low dose 131I exposure.
PLoS One. 2020;15:e0244098.
PubMed Abstract available

MENIKOU S, McArdle AJ, Li MS, Kaforou M, et al
A proteomics-based method for identifying antigens within immune complexes.
PLoS One. 2020;15:e0244157.
PubMed Abstract available

VIANA MVC, Profeta R, da Silva AL, Hurtado R, et al
Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum.
PLoS One. 2020;15:e0244210.
PubMed Abstract available

GUEVARA EK, Palo JU, Oversti S, King JL, et al
Genetic assessment reveals no population substructure and divergent regional and sex-specific histories in the Chachapoyas from northeast Peru.
PLoS One. 2020;15:e0244497.
PubMed Abstract available

WANG J, Ran LL, Li Y, Liu YH, et al
Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae).
PLoS One. 2020;15:e0244493.
PubMed Abstract available

LASO-JADART R, Ambroise C, Peterlongo P, Madoui MA, et al
metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics.
PLoS One. 2020;15:e0244637.
PubMed Abstract available

VON MAYDELL D, Lehnert H, Berner T, Klocke E, et al
On genetic diversity in caraway: Genotyping of a large germplasm collection.
PLoS One. 2020;15:e0244666.
PubMed Abstract available

HULL JJA, Qi M, Montmayeur AM, Kumar D, et al
Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States.
PLoS One. 2020;15:e0244498.
PubMed Abstract available

VILLATORO AJ, Alcoholado C, Martin-Astorga MDC, Rico G, et al
Characterization of the secretory profile and exosomes of limbal stem cells in the canine species.
PLoS One. 2020;15:e0244327.
PubMed Abstract available

OYAMA Y, Shuff S, Davizon-Castillo P, Clendenen N, et al
Intense light as anticoagulant therapy in humans.
PLoS One. 2020;15:e0244792.
PubMed Abstract available

January 2019

FERREIRA JE, Ferreira SC, Almeida-Neto C, Nishiya AS, et al
Molecular characterization of viruses associated with encephalitis in Sao Paulo, Brazil.
PLoS One. 2019;14:e0209993.
PubMed Abstract available

ARHOUNE B, Oumokhtar B, Hmami F, El Fakir S, et al
Intestinal carriage of antibiotic resistant Acinetobacter baumannii among newborns hospitalized in Moroccan neonatal intensive care unit.
PLoS One. 2019;14:e0209425.
PubMed Abstract available

MA L, Yang Y, Zhao X, Wang F, et al
Heat stress induces proteomic changes in the liver and mammary tissue of dairy cows independent of feed intake: An iTRAQ study.
PLoS One. 2019;14:e0209182.
PubMed Abstract available

VOGLER AJ, Sahl JW, Leal NC, Sobreira M, et al
A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic.
PLoS One. 2019;14:e0209478.
PubMed Abstract available

SHAO B, Bjaanaes MM, Helland A, Schutte C, et al
EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma.
PLoS One. 2019;14:e0204186.
PubMed Abstract available

DARWISH HYA, Dalirsefat SB, Dong X, Hua G, et al
Genome-wide association study and a post replication analysis revealed a promising genomic region and candidate genes for chicken eggshell blueness.
PLoS One. 2019;14:e0209181.
PubMed Abstract available

HSU WH, Shen YC, Shiao YJ, Kuo CH, et al
Combined proteomic and metabolomic analyses of cerebrospinal fluid from mice with ischemic stroke reveals the effects of a Buyang Huanwu decoction in neurodegenerative disease.
PLoS One. 2019;14:e0209184.
PubMed Abstract available

MAYDAY MY, Khan LM, Chow ED, Zinter MS, et al
Miniaturization and optimization of 384-well compatible RNA sequencing library preparation.
PLoS One. 2019;14:e0206194.
PubMed Abstract available

THORNBURY M, Sicheri J, Slaine P, Getz LJ, et al
Characterization of novel lignocellulose-degrading enzymes from the porcupine microbiome using synthetic metagenomics.
PLoS One. 2019;14:e0209221.
PubMed Abstract available

LEYNAUD-KIEFFER LMC, Curran SC, Kim I, Magnuson JK, et al
A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable.
PLoS One. 2019;14:e0210243.
PubMed Abstract available

GUERRERO-SANCHEZ VM, Maldonado-Alconada AM, Amil-Ruiz F, Verardi A, et al
Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome.
PLoS One. 2019;14:e0210356.
PubMed Abstract available

TASKOVA K, Fontaine JF, Mrowka R, Andrade-Navarro MA, et al
Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets.
PLoS One. 2019;14:e0210467.
PubMed Abstract available

CADEZ N, Bellora N, Ulloa R, Hittinger CT, et al
Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina.
PLoS One. 2019;14:e0210792.
PubMed Abstract available

GURGUL A, Jasielczuk I, Semik-Gurgul E, Pawlina-Tyszko K, et al
A genome-wide scan for diversifying selection signatures in selected horse breeds.
PLoS One. 2019;14:e0210751.
PubMed Abstract available

BUDINSKI I, Blagojevic J, Jovanovic VM, Pejic B, et al
Population genetic structure of the Mediterranean horseshoe bat Rhinolophus euryale in the central Balkans.
PLoS One. 2019;14:e0210321.
PubMed Abstract available

VALENCA-BARBOSA C, do Bomfim TCB, Teixeira BR, Gentile R, et al
Molecular epidemiology of Blastocystis isolated from animals in the state of Rio de Janeiro, Brazil.
PLoS One. 2019;14:e0210740.
PubMed Abstract available

YAO S, Tuo T, Gao X, Han C, et al
Molecular epidemiology of chicken anaemia virus in sick chickens in China from 2014 to 2015.
PLoS One. 2019;14:e0210696.
PubMed Abstract available

PANG YY, Zhang C, Xu MJ, Huang GY, et al
The transcriptome sequencing and functional analysis of eyestalk ganglions in Chinese mitten crab (Eriocheir sinensis) treated with different photoperiods.
PLoS One. 2019;14:e0210414.
PubMed Abstract available

HJELMSO MH, Mollerup S, Jensen RH, Pietroni C, et al
Metagenomic analysis of viruses in toilet waste from long distance flights-A new procedure for global infectious disease surveillance.
PLoS One. 2019;14:e0210368.
PubMed Abstract available

GAMBOA M, Muranyi D, Kanmori S, Watanabe K, et al
Molecular phylogeny and diversification timing of the Nemouridae family (Insecta, Plecoptera) in the Japanese Archipelago.
PLoS One. 2019;14:e0210269.
PubMed Abstract available

HTWE KTZ, Dapat C, Shobugawa Y, Odagiri T, et al
Phylogeographic analysis of human influenza A and B viruses in Myanmar, 2010-2015.
PLoS One. 2019;14:e0210550.
PubMed Abstract available

XU C, Huang Q, Ge X, Li Z, et al
Phenotypic, cytogenetic, and molecular marker analysis of Brassica napus introgressants derived from an intergeneric hybridization with Orychophragmus.
PLoS One. 2019;14:e0210518.
PubMed Abstract available

WIROJSIRASAK W, Kalapanulak S, Saithong T
Pan- and core- gene association networks: Integrative approaches to understanding biological regulation.
PLoS One. 2019;14:e0210481.
PubMed Abstract available

QUEIROS J, Acevedo P, Santos JPV, Barasona J, et al
Red deer in Iberia: Molecular ecological studies in a southern refugium and inferences on European postglacial colonization history.
PLoS One. 2019;14:e0210282.
PubMed Abstract available

RAKOVIC M, Neto JM, Lopes RJ, Koblik EA, et al
Geographic patterns of mtDNA and Z-linked sequence variation in the Common Chiffchaff and the 'chiffchaff complex'.
PLoS One. 2019;14:e0210268.
PubMed Abstract available

WANG X, Miao J, Chang T, Xia J, et al
Evaluation of GBLUP, BayesB and elastic net for genomic prediction in Chinese Simmental beef cattle.
PLoS One. 2019;14:e0210442.
PubMed Abstract available

VIGALONDO B, Patino J, Draper I, Mazimpaka V, et al
The long journey of Orthotrichum shevockii (Orthotrichaceae, Bryopsida): From California to Macaronesia.
PLoS One. 2019;14:e0211017.
PubMed Abstract available

MASSON T, Fabre ML, Ferrelli ML, Pidre ML, et al
Protein composition of the occlusion bodies of Epinotia aporema granulovirus.
PLoS One. 2019;14:e0207735.
PubMed Abstract available

RICCIOTTI E, Sarantopoulou D, Grant GR, Sanzari JK, et al
Distinct vascular genomic response of proton and gamma radiation-A pilot investigation.
PLoS One. 2019;14:e0207503.
PubMed Abstract available

XI Y, Wang F
Extreme pathway analysis reveals the organizing rules of metabolic regulation.
PLoS One. 2019;14:e0210539.
PubMed Abstract available

SUBRAMANIAM S, Muller VS, Hering NA, Mollenkopf H, et al
Contribution of the Cpx envelope stress system to metabolism and virulence regulation in Salmonella enterica serovar Typhimurium.
PLoS One. 2019;14:e0211584.
PubMed Abstract available

KOEPPEN K, Barnaby R, Jackson AA, Gerber SA, et al
Tobramycin reduces key virulence determinants in the proteome of Pseudomonas aeruginosa outer membrane vesicles.
PLoS One. 2019;14:e0211290.
PubMed Abstract available

TAKAHASHI Y, Konishi T, Yamaki K
Tofu and fish oil independently modulate serum lipid profiles in rats: Analyses of 10 class lipoprotein profiles and the global hepatic transcriptome.
PLoS One. 2019;14:e0210950.
PubMed Abstract available

KECHAVARZI BD, Wu H, Doman TN
Bottom-up, integrated -omics analysis identifies broadly dosage-sensitive genes in breast cancer samples from TCGA.
PLoS One. 2019;14:e0210910.
PubMed Abstract available

STEWART JAE, Butterfield HS, Richmond JQ, Germano DJ, et al
Habitat restoration opportunities, climatic niche contraction, and conservation biogeography in California's San Joaquin Desert.
PLoS One. 2019;14:e0210766.
PubMed Abstract available

CAO Y, Meng D, Chen T, Chen Y, et al
Metacaspase gene family in Rosaceae genomes: Comparative genomic analysis and their expression during pear pollen tube and fruit development.
PLoS One. 2019;14:e0211635.
PubMed Abstract available

ADESOKAN HK, Streicher EM, van Helden PD, Warren RM, et al
Genetic diversity of Mycobacterium tuberculosis complex strains isolated from livestock workers and cattle in Nigeria.
PLoS One. 2019;14:e0211637.
PubMed Abstract available

AKHWALE JK, Rohde M, Rohde C, Bunk B, et al
Comparative genomic analysis of eight novel haloalkaliphilic bacteriophages from Lake Elmenteita, Kenya.
PLoS One. 2019;14:e0212102.
PubMed Abstract available

HEINE V, Meinert-Berning C, Luck J, Mikowsky N, et al
The catabolism of 3,3'-thiodipropionic acid in Variovorax paradoxus strain TBEA6: A proteomic analysis.
PLoS One. 2019;14:e0211876.
PubMed Abstract available

LOKMER A, Cian A, Froment A, Gantois N, et al
Use of shotgun metagenomics for the identification of protozoa in the gut microbiota of healthy individuals from worldwide populations with various industrialization levels.
PLoS One. 2019;14:e0211139.
PubMed Abstract available

WEILAND-BRAUER N, Malek I, Schmitz RA
Metagenomic quorum quenching enzymes affect biofilm formation of Candida albicans and Staphylococcus epidermidis.
PLoS One. 2019;14:e0211366.
PubMed Abstract available

JOAQUIM LB, Chud TCS, Marchesi JAP, Savegnago RP, et al
Genomic structure of a crossbred Landrace pig population.
PLoS One. 2019;14:e0212266.
PubMed Abstract available

SISSUNG TM, Rajan A, Blumenthal GM, Liewehr DJ, et al
Reproducibility of pharmacogenetics findings for paclitaxel in a heterogeneous population of patients with lung cancer.
PLoS One. 2019;14:e0212097.
PubMed Abstract available

ALI F, Yilmaz A, Nadeem MA, Habyarimana E, et al
Mobile genomic element diversity in world collection of safflower (Carthamus tinctorius L.) panel using iPBS-retrotransposon markers.
PLoS One. 2019;14:e0211985.
PubMed Abstract available

DECORTE R, Polet C, Boudin M, Tilquin F, et al
An interdisciplinary study around the reliquary of the late cardinal Jacques de Vitry.
PLoS One. 2019;14:e0201424.
PubMed Abstract available

MANGIN B, Rincent R, Rabier CE, Moreau L, et al
Training set optimization of genomic prediction by means of EthAcc.
PLoS One. 2019;14:e0205629.
PubMed Abstract available

POLLOCK RA, Zaman L, Chandran V, Gladman DD, et al
Epigenome-wide analysis of sperm cells identifies IL22 as a possible germ line risk locus for psoriatic arthritis.
PLoS One. 2019;14:e0212043.
PubMed Abstract available

HERNANDEZ M, Martin MV, Herrador-Gomez PM, Jimenez S, et al
Mitocondrial COI and 16S rDNA sequences support morphological identification and biogeography of deep-sea red crabs of the genus Chaceon (Crustacea, Decapoda, Geryonidae) in the Eastern Central and South Atlantic Ocean.
PLoS One. 2019;14:e0211717.
PubMed Abstract available

ZHAO Y, Pan B, Zhang M
Phylogeography and conservation genetics of the endangered Tugarinovia mongolica (Asteraceae) from Inner Mongolia, Northwest China.
PLoS One. 2019;14:e0211696.
PubMed Abstract available

BERGERON MJ, Feau N, Stewart D, Tanguay P, et al
Genome-enhanced detection and identification of fungal pathogens responsible for pine and poplar rust diseases.
PLoS One. 2019;14:e0210952.
PubMed Abstract available

KIM B, Lee H, Jang J, Kim SJ, et al
Targeted next generation sequencing can serve as an alternative to conventional tests in myeloid neoplasms.
PLoS One. 2019;14:e0212228.
PubMed Abstract available

OTCHERE ID, van Tonder AJ, Asante-Poku A, Sanchez-Buso L, et al
Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana.
PLoS One. 2019;14:e0209395.
PubMed Abstract available

SAITO K, Koido S, Odamaki T, Kajihara M, et al
Metagenomic analyses of the gut microbiota associated with colorectal adenoma.
PLoS One. 2019;14:e0212406.
PubMed Abstract available

VILLAR COUTO CM, Cumming GS, Lacorte GA, Congrains C, et al
Avian haemosporidians in the cattle egret (Bubulcus ibis) from central-western and southern Africa: High diversity and prevalence.
PLoS One. 2019;14:e0212425.
PubMed Abstract available

MACAULAY V, Soares P, Richards MB
Rectifying long-standing misconceptions about the rho statistic for molecular dating.
PLoS One. 2019;14:e0212311.
PubMed Abstract available

BEGIC E, Hadzidedic S, Kulaglic A, Ramic-Brkic B, et al
SOMAscan-based proteomic measurements of plasma brain natriuretic peptide are decreased in mild cognitive impairment and in Alzheimer's dementia patients.
PLoS One. 2019;14:e0212261.
PubMed Abstract available

ACCIOLY T, Sousa JO, Moreau PA, Lecuru C, et al
Hidden fungal diversity from the Neotropics: Geastrum hirsutum, G. schweinitzii (Basidiomycota, Geastrales) and their allies.
PLoS One. 2019;14:e0211388.
PubMed Abstract available

CONROY GC, Shimizu-Kimura Y, Lamont RW, Ogbourne SM, et al
A multidisciplinary approach to inform assisted migration of the restricted rainforest tree, Fontainea rostrata.
PLoS One. 2019;14:e0210560.
PubMed Abstract available

SANT' ANNA IC, Cabral Ferreira RAD, Nascimento M, Silva GN, et al
Multigenerational prediction of genetic values using genome-enabled prediction.
PLoS One. 2019;14:e0210531.
PubMed Abstract available

PLATTEN JD, Cobb JN, Zantua RE
Criteria for evaluating molecular markers: Comprehensive quality metrics to improve marker-assisted selection.
PLoS One. 2019;14:e0210529.
PubMed Abstract available

MARTIN-GALIANO AJ, Lopez D
Computational characterization of the peptidome in transporter associated with antigen processing (TAP)-deficient cells.
PLoS One. 2019;14:e0210583.
PubMed Abstract available

RODRIQUES SG, Marblestone AH, Boyden ES
A theoretical analysis of single molecule protein sequencing via weak binding spectra.
PLoS One. 2019;14:e0212868.
PubMed Abstract available

RUPJI M, Dwivedi B, Kowalski J
NOJAH: NOt Just Another Heatmap for genome-wide cluster analysis.
PLoS One. 2019;14:e0204542.
PubMed Abstract available

FREGEL R, Ordonez AC, Santana-Cabrera J, Cabrera VM, et al
Mitogenomes illuminate the origin and migration patterns of the indigenous people of the Canary Islands.
PLoS One. 2019;14:e0209125.
PubMed Abstract available

URQUIA D, Gutierrez B, Pozo G, Pozo MJ, et al
Psidium guajava in the Galapagos Islands: Population genetics and history of an invasive species.
PLoS One. 2019;14:e0203737.
PubMed Abstract available

VELTMAN MA, Flowers JM, van Andel TR, Schranz ME, et al
Origins and geographic diversification of African rice (Oryza glaberrima).
PLoS One. 2019;14:e0203508.
PubMed Abstract available

ZHANG LJ, Yang L, Gu XX, Chen PX, et al
The first isolation of Clostridium difficile RT078/ST11 from pigs in China.
PLoS One. 2019;14:e0212965.
PubMed Abstract available

KIM JJ, Savas JN, Miller MT, Hu X, et al
Proteomic analyses reveal misregulation of LIN28 expression and delayed timing of glial differentiation in human iPS cells with MECP2 loss-of-function.
PLoS One. 2019;14:e0212553.
PubMed Abstract available

ROE WD, Lenting B, Kokosinska A, Hunter S, et al
Pathology and molecular epidemiology of Mycobacterium pinnipedii tuberculosis in native New Zealand marine mammals.
PLoS One. 2019;14:e0212363.
PubMed Abstract available

XU T, Gu L, Yu H, Jiang X, et al
Analysis of Anasplatyrhynchos genome resequencing data reveals genetic signatures of artificial selection.
PLoS One. 2019;14:e0211908.
PubMed Abstract available

ROEHRER S, Stork V, Ludwig C, Minceva M, et al
Analyzing bioactive effects of the minor hop compound xanthohumol C on human breast cancer cells using quantitative proteomics.
PLoS One. 2019;14:e0213469.
PubMed Abstract available

TESCHIMA MM, Garrido A, Paris A, Nunes FLD, et al
Biogeography of the endosymbiotic dinoflagellates (Symbiodiniaceae) community associated with the brooding coral Favia gravida in the Atlantic Ocean.
PLoS One. 2019;14:e0213519.
PubMed Abstract available

UJIIE Y, Kimoto K, Ishimura T
Advanced approach to analyzing calcareous protists for present and past pelagic ecology: Comprehensive analysis of 3D-morphology, stable isotopes, and genes of planktic foraminifers.
PLoS One. 2019;14:e0213282.
PubMed Abstract available

PLATE M, Bernstein R, Hoppe A, Bienefeld K, et al
Comparison of infinitesimal and finite locus models for long-term breeding simulations with direct and maternal effects at the example of honeybees.
PLoS One. 2019;14:e0213270.
PubMed Abstract available

SUNG MH, Lin CN, Chiou MT, Cheng IJ, et al
Phylogeographic investigation of 2014 porcine epidemic diarrhea virus (PEDV) transmission in Taiwan.
PLoS One. 2019;14:e0213153.
PubMed Abstract available

QIU Y, Wang S, Huang B, Zhong H, et al
Viral infection detection using metagenomics technology in six poultry farms of eastern China.
PLoS One. 2019;14:e0211553.
PubMed Abstract available

CHEN Y, Vu J, Thompson MG, Sharpless WA, et al
A rapid methods development workflow for high-throughput quantitative proteomic applications.
PLoS One. 2019;14:e0211582.
PubMed Abstract available

JAMES G, Reisberg S, Lepik K, Galwey N, et al
An exploratory phenome wide association study linking asthma and liver disease genetic variants to electronic health records from the Estonian Biobank.
PLoS One. 2019;14:e0215026.
PubMed Abstract available

BUBIER JA, Sutphin GL, Reynolds TJ, Korstanje R, et al
Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species.
PLoS One. 2019;14:e0214523.
PubMed Abstract available

IQBAL N, Liu X, Yang T, Huang Z, et al
Genomic variants identified from whole-genome resequencing of indicine cattle breeds from Pakistan.
PLoS One. 2019;14:e0215065.
PubMed Abstract available

NAKATO GV, Fuentes Rojas JL, Verniere C, Blondin L, et al
A new Multi Locus Variable Number of Tandem Repeat Analysis Scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wilt on banana and enset.
PLoS One. 2019;14:e0215090.
PubMed Abstract available

AGUADO MT, Capa M, Lago-Barcia D, Gil J, et al
Species delimitation in Amblyosyllis (Annelida, Syllidae).
PLoS One. 2019;14:e0214211.
PubMed Abstract available

MISHRA N, Fagbo SF, Alagaili AN, Nitido A, et al
A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia.
PLoS One. 2019;14:e0214227.
PubMed Abstract available

KUPLIK Z, Novak L, Shenkar N
Proteomic profiling of ascidians as a tool for biomonitoring marine environments.
PLoS One. 2019;14:e0215005.
PubMed Abstract available

NGUYEN TPH, Patrick CJ, Parry LJ, Familari M, et al
Using proteomics to advance the search for potential biomarkers for preeclampsia: A systematic review and meta-analysis.
PLoS One. 2019;14:e0214671.
PubMed Abstract available

GUTHRIE JL, Marchand-Austin A, Cronin K, Lam K, et al
Universal genotyping reveals province-level differences in the molecular epidemiology of tuberculosis.
PLoS One. 2019;14:e0214870.
PubMed Abstract available

SIDHU JS, Ramakrishnan SM, Ali S, Bernardo A, et al
Assessing the genetic diversity and characterizing genomic regions conferring Tan Spot resistance in cultivated rye.
PLoS One. 2019;14:e0214519.
PubMed Abstract available

PICHITPUNPONG C, Thongkorn S, Kanlayaprasit S, Yuwattana W, et al
Phenotypic subgrouping and multi-omics analyses reveal reduced diazepam-binding inhibitor (DBI) protein levels in autism spectrum disorder with severe language impairment.
PLoS One. 2019;14:e0214198.
PubMed Abstract available

RAVNSBORG T, Svaneklink S, Andersen LLT, Larsen MR, et al
First-trimester proteomic profiling identifies novel predictors of gestational diabetes mellitus.
PLoS One. 2019;14:e0214457.
PubMed Abstract available

STEPIEN CA, Snyder MR, Elz AE
Invasion genetics of the silver carp Hypophthalmichthys molitrix across North America: Differentiation of fronts, introgression, and eDNA metabarcode detection.
PLoS One. 2019;14:e0203012.
PubMed Abstract available

MARESOVA J, Habel JC, Neve G, Sielezniew M, et al
Cross-continental phylogeography of two Holarctic Nymphalid butterflies, Boloria eunomia and Boloria selene.
PLoS One. 2019;14:e0214483.
PubMed Abstract available

UNO Y, Nishida C, Hata A, Ishishita S, et al
Molecular cytogenetic characterization of repetitive sequences comprising centromeric heterochromatin in three Anseriformes species.
PLoS One. 2019;14:e0214028.
PubMed Abstract available

BORRELL S, Trauner A, Brites D, Rigouts L, et al
Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development.
PLoS One. 2019;14:e0214088.
PubMed Abstract available

AKAIKE T, Shinjo S, Ohmori E, Kajimura I, et al
Transcriptional profiles in the chicken ductus arteriosus during hatching.
PLoS One. 2019;14:e0214139.
PubMed Abstract available

DUCRET A, James I, Wilson S, Feilke M, et al
Translation and evaluation of a pre-clinical 5-protein response prediction signature in a breast cancer phase Ib clinical trial.
PLoS One. 2019;14:e0213892.
PubMed Abstract available

CHEUNG S, Parrella A, Rosenwaks Z, Palermo GD, et al
Genetic and epigenetic profiling of the infertile male.
PLoS One. 2019;14:e0214275.
PubMed Abstract available

MORARD R, Vollmar NM, Greco M, Kucera M, et al
Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species.
PLoS One. 2019;14:e0213936.
PubMed Abstract available

NI G, Chen S, Yuan J, Cavezza SF, et al
Comparative proteomic study reveals the enhanced immune response with the blockade of interleukin 10 with anti-IL-10 and anti-IL-10 receptor antibodies in human U937 cells.
PLoS One. 2019;14:e0213813.
PubMed Abstract available

LI Z, Meng M, Li S, Deng B, et al
The transcriptome analysis of Protaetia brevitarsis Lewis larvae.
PLoS One. 2019;14:e0214001.
PubMed Abstract available

LIMA-REZENDE CA, Rocha AV, Junior AFC, Martins ES, et al
Late Pleistocene climatic changes promoted demographic expansion and population reconnection of a Neotropical savanna-adapted bird, Neothraupis fasciata (Aves: Thraupidae).
PLoS One. 2019;14:e0212876.
PubMed Abstract available

PORTILLO A, Palomar AM, de Toro M, Santibanez S, et al
Exploring the bacteriome in anthropophilic ticks: To investigate the vectors for diagnosis.
PLoS One. 2019;14:e0213384.
PubMed Abstract available

WONG SY, Hashim OH, Hayashi N
Development of high-performance two-dimensional gel electrophoresis for human hair shaft proteome.
PLoS One. 2019;14:e0213947.
PubMed Abstract available

KUMAR G, Langa J, Montes I, Conklin D, et al
A novel transcriptome-derived SNPs array for tench (Tinca tinca L.).
PLoS One. 2019;14:e0213992.
PubMed Abstract available

ZIATS CA, Grosvenor LP, Sarasua SM, Thurm AE, et al
Functional genomics analysis of Phelan-McDermid syndrome 22q13 region during human neurodevelopment.
PLoS One. 2019;14:e0213921.
PubMed Abstract available

KARIMI K, Sargolzaei M, Plastow GS, Wang Z, et al
Opportunities for genomic selection in American mink: A simulation study.
PLoS One. 2019;14:e0213873.
PubMed Abstract available

HOBBS J, Round JM, Allison MJ, Helbing CC, et al
Expansion of the known distribution of the coastal tailed frog, Ascaphus truei, in British Columbia, Canada, using robust eDNA detection methods.
PLoS One. 2019;14:e0213849.
PubMed Abstract available

JABBARI K, Wirtz J, Rauscher M, Wiehe T, et al
A common genomic code for chromatin architecture and recombination landscape.
PLoS One. 2019;14:e0213278.
PubMed Abstract available

BAKRI M, Samuh M, Azzeh M
Molecular epidemiology survey and characterization of human influenza A viruses circulating among Palestinians in East Jerusalem and the West Bank in 2015.
PLoS One. 2019;14:e0213290.
PubMed Abstract available

VILLANDRE L, Labbe A, Brenner B, Ibanescu RI, et al
Assessing the role of transmission chains in the spread of HIV-1 among men who have sex with men in Quebec, Canada.
PLoS One. 2019;14:e0213366.
PubMed Abstract available

SANAA M, Pouillot R, Vega FG, Strain E, et al
GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization.
PLoS One. 2019;14:e0213039.
PubMed Abstract available

MAZUMDAR R, Nobauer K, Hummel K, Hess M, et al
Molecular characterization of Histomonas meleagridis exoproteome with emphasis on protease secretion and parasite-bacteria interaction.
PLoS One. 2019;14:e0212429.
PubMed Abstract available

PEDRUZZI G, Rouzine IM
Epistasis detectably alters correlations between genomic sites in a narrow parameter window.
PLoS One. 2019;14:e0214036.
PubMed Abstract available

WALDRON R, McGowan J, Gordon N, McCarthy C, et al
Proteome and allergenome of the European house dust mite Dermatophagoides pteronyssinus.
PLoS One. 2019;14:e0216171.
PubMed Abstract available

LOPEZ-ORTIZ C, Dutta SK, Natarajan P, Pena-Garcia Y, et al
Genome-wide identification and gene expression pattern of ABC transporter gene family in Capsicum spp.
PLoS One. 2019;14:e0215901.
PubMed Abstract available

DE LA TORRE U, Henderson JD, Furtado KL, Pedroja M, et al
Utilizing the fecal microbiota to understand foal gut transitions from birth to weaning.
PLoS One. 2019;14:e0216211.
PubMed Abstract available

LETSINGER AC, Granados JZ, Little SE, Lightfoot JT, et al
Alleles associated with physical activity levels are estimated to be older than anatomically modern humans.
PLoS One. 2019;14:e0216155.
PubMed Abstract available

KONG Y, Rastogi D, Seoighe C, Greally JM, et al
Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data.
PLoS One. 2019;14:e0215987.
PubMed Abstract available

LIU S, Zheng X, Pan J, Peng L, et al
RNA-sequencing analysis reveals betalains metabolism in the leaf of Amaranthus tricolor L.
PLoS One. 2019;14:e0216001.
PubMed Abstract available

COX K, McKeown N, Antonini G, Harvey D, et al
Phylogeographic structure and ecological niche modelling reveal signals of isolation and postglacial colonisation in the European stag beetle.
PLoS One. 2019;14:e0215860.
PubMed Abstract available

LEE WK, Kim SJ, Hou BK, Van Dover CL, et al
Population genetic differentiation of the hydrothermal vent crab Austinograea alayseae (Crustacea: Bythograeidae) in the Southwest Pacific Ocean.
PLoS One. 2019;14:e0215829.
PubMed Abstract available

TAREKEGN GM, Wouobeng P, Jaures KS, Mrode R, et al
Genome-wide diversity and demographic dynamics of Cameroon goats and their divergence from east African, north African, and Asian conspecifics.
PLoS One. 2019;14:e0214843.
PubMed Abstract available

SHARMA LK, Mukherjee T, Saren PC, Chandra K, et al
Identifying suitable habitat and corridors for Indian Grey Wolf (Canis lupus pallipes) in Chotta Nagpur Plateau and Lower Gangetic Planes: A species with differential management needs.
PLoS One. 2019;14:e0215019.
PubMed Abstract available

LI S, Cao Y, Li L, Zhang H, et al
Building the drug-GO function network to screen significant candidate drugs for myasthenia gravis.
PLoS One. 2019;14:e0214857.
PubMed Abstract available

TRACHSEL S, Dhliwayo T, Gonzalez Perez L, Mendoza Lugo JA, et al
Estimation of physiological genomic estimated breeding values (PGEBV) combining full hyperspectral and marker data across environments for grain yield under combined heat and drought stress in tropical maize (Zea mays L.).
PLoS One. 2019;14:e0212200.
PubMed Abstract available

GANOVA-RAEVA L, Dimitrova Z, Alexiev I, Punkova L, et al
HCV transmission in high-risk communities in Bulgaria.
PLoS One. 2019;14:e0212350.
PubMed Abstract available

TIMOFEEV V, Bahtejeva I, Mironova R, Titareva G, et al
Insights from Bacillus anthracis strains isolated from permafrost in the tundra zone of Russia.
PLoS One. 2019;14:e0209140.
PubMed Abstract available

WAGNER ER, Myers KS, Riley NM, Coon JJ, et al
PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production.
PLoS One. 2019;14:e0212389.
PubMed Abstract available

SUGUIYAMA VF, Vasconcelos LAB, Rossi MM, Biondo C, et al
The population genetic structure approach adds new insights into the evolution of plant LTR retrotransposon lineages.
PLoS One. 2019;14:e0214542.
PubMed Abstract available

GRANT ET, Kyes RC, Kyes P, Trinh P, et al
Fecal microbiota dysbiosis in macaques and humans within a shared environment.
PLoS One. 2019;14:e0210679.
PubMed Abstract available

VAN NIEUWENHOVE AHM, Ratsimbazafy HA, Kochzius M
Cryptic diversity and limited connectivity in octopuses: Recommendations for fisheries management.
PLoS One. 2019;14:e0214748.
PubMed Abstract available

DANTAS GPM, Oliveira LR, Santos AM, Flores MD, et al
Uncovering population structure in the Humboldt penguin (Spheniscus humboldti) along the Pacific coast at South America.
PLoS One. 2019;14:e0215293.
PubMed Abstract available

YE P, Li M, Liao W, Ge K, et al
Hypothalamic transcriptome analysis reveals the neuroendocrine mechanisms in controlling broodiness of Muscovy duck (Cairina moschata).
PLoS One. 2019;14:e0207050.
PubMed Abstract available

SAKURAI K, Shioda K, Eguchi A, Watanabe M, et al
DNA methylome of human neonatal umbilical cord: Enrichment of differentially methylated regions compared to umbilical cord blood DNA at transcription factor genes involved in body patterning and effects of maternal folate deficiency or children's sex.
PLoS One. 2019;14:e0214307.
PubMed Abstract available

BHANDARI A, Bartholome J, Cao-Hamadoun TV, Kumari N, et al
Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice.
PLoS One. 2019;14:e0208871.
PubMed Abstract available

TVEITARAS MK, Selheim F, Sortland K, Reed RK, et al
Protein expression profiling of plasma and lungs at different stages of metastatic development in a human triple negative breast cancer xenograft model.
PLoS One. 2019;14:e0215909.
PubMed Abstract available

SCHMEDES SE, Patel D, Kelley J, Udhayakumar V, et al
Using the Plasmodium mitochondrial genome for classifying mixed-species infections and inferring the geographical origin of P. falciparum parasites imported to the U.S.
PLoS One. 2019;14:e0215754.
PubMed Abstract available

ZAKERI Z, Otte V, Sipman H, Malicek J, et al
Discovering cryptic species in the Aspiciliella intermutans complex (Megasporaceae, Ascomycota) - First results using gene concatenation and coalescent-based species tree approaches.
PLoS One. 2019;14:e0216675.
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MITRA S, Saha S
A multiobjective multi-view cluster ensemble technique: Application in patient subclassification.
PLoS One. 2019;14:e0216904.
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PELLIZZARO M, Martins CM, Yamakawa AC, Ferraz DDC, et al
Molecular detection of Leptospira spp. in rats as early spatial predictor for human disease in an endemic urban area.
PLoS One. 2019;14:e0216830.
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VAN DAM TJP, Kennedy J, van der Lee R, de Vrieze E, et al
CiliaCarta: An integrated and validated compendium of ciliary genes.
PLoS One. 2019;14:e0216705.
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PATIL K, Yelamanchi S, Kumar M, Hinduja I, et al
Quantitative mass spectrometric analysis to unravel glycoproteomic signature of follicular fluid in women with polycystic ovary syndrome.
PLoS One. 2019;14:e0214742.
PubMed Abstract available

ROSE I, Yoshimizu MH, Bonilla DL, Fedorova N, et al
Phylogeography of Borrelia spirochetes in Ixodes pacificus and Ixodes spinipalpis ticks highlights differential acarological risk of tick-borne disease transmission in northern versus southern California.
PLoS One. 2019;14:e0214726.
PubMed Abstract available

NAKAMURA H, Fujii K, Gupta V, Hata H, et al
Identification of key modules and hub genes for small-cell lung carcinoma and large-cell neuroendocrine lung carcinoma by weighted gene co-expression network analysis of clinical tissue-proteomes.
PLoS One. 2019;14:e0217105.
PubMed Abstract available

HAUN CT, Vann CG, Osburn SC, Mumford PW, et al
Muscle fiber hypertrophy in response to 6 weeks of high-volume resistance training in trained young men is largely attributed to sarcoplasmic hypertrophy.
PLoS One. 2019;14:e0215267.
PubMed Abstract available

CURRY CJ, White PA, Derr JN
Genetic analysis of African lions (Panthera leo) in Zambia support movement across anthropogenic and geographical barriers.
PLoS One. 2019;14:e0217179.
PubMed Abstract available

BEDRI SK, Nilsson OB, Fink K, Manberg A, et al
Plasma protein profiling reveals candidate biomarkers for multiple sclerosis treatment.
PLoS One. 2019;14:e0217208.
PubMed Abstract available

ZACHARIOUDAKIS IM, Zervou FN, Shehadeh F, Mylonakis E, et al
Cost-effectiveness of molecular diagnostic assays for the therapy of severe sepsis and septic shock in the emergency department.
PLoS One. 2019;14:e0217508.
PubMed Abstract available

CLUCAS GV, Kerr LA, Cadrin SX, Zemeckis DR, et al
Adaptive genetic variation underlies biocomplexity of Atlantic Cod in the Gulf of Maine and on Georges Bank.
PLoS One. 2019;14:e0216992.
PubMed Abstract available

CZARNOMSKA SD, Niedzialkowska M, Borowik T, Jedrzejewska B, et al
Winter temperature correlates with mtDNA genetic structure of yellow-necked mouse population in NE Poland.
PLoS One. 2019;14:e0216361.
PubMed Abstract available

MUDERSBACH T, Siuda D, Kohlstedt K, Fleming I, et al
Epigenetic control of the angiotensin-converting enzyme in endothelial cells during inflammation.
PLoS One. 2019;14:e0216218.
PubMed Abstract available

PAROLIN ML, Toscanini UF, Velazquez IF, Llull C, et al
Genetic admixture patterns in Argentinian Patagonia.
PLoS One. 2019;14:e0214830.
PubMed Abstract available

PEES M, Schmidt V, Papp T, Gellert A, et al
Three genetically distinct ferlaviruses have varying effects on infected corn snakes (Pantherophis guttatus).
PLoS One. 2019;14:e0217164.
PubMed Abstract available

ZHANG Q, Du Y
Model-free feature screening for categorical outcomes: Nonlinear effect detection and false discovery rate control.
PLoS One. 2019;14:e0217463.
PubMed Abstract available

BILLINGS E, Heipertz RA, Varleva T, Sanders-Buell E, et al
HIV-1 genetic diversity and demographic characteristics in Bulgaria.
PLoS One. 2019;14:e0217063.
PubMed Abstract available

CZECH L, Stamatakis A
Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples.
PLoS One. 2019;14:e0217050.
PubMed Abstract available

KAMALIDDIN C, Rombaut D, Guillochon E, Royo J, et al
From genomic to LC-MS/MS evidence: Analysis of PfEMP1 in Benin malaria cases.
PLoS One. 2019;14:e0218012.
PubMed Abstract available

YANG W, Yu M, Zou C, Lu C, et al
Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii.
PLoS One. 2019;14:e0218938.
PubMed Abstract available

NAVARRO QUIROZ E, Navarro Quiroz R, Pacheco Lugo L, Aroca Martinez G, et al
Integrated analysis of microRNA regulation and its interaction with mechanisms of epigenetic regulation in the etiology of systemic lupus erythematosus.
PLoS One. 2019;14:e0218116.
PubMed Abstract available

HAMID R, Marashi H, Tomar RS, Malekzadeh Shafaroudi S, et al
Transcriptome analysis identified aberrant gene expression in pollen developmental pathways leading to CGMS in cotton (Gossypium hirsutum L.).
PLoS One. 2019;14:e0218381.
PubMed Abstract available

ZONG D, Gan P, Zhou A, Li J, et al
Comparative analysis of the complete chloroplast genomes of seven Populus species: Insights into alternative female parents of Populus tomentosa.
PLoS One. 2019;14:e0218455.
PubMed Abstract available

WREN CD, Burke A
Habitat suitability and the genetic structure of human populations during the Last Glacial Maximum (LGM) in Western Europe.
PLoS One. 2019;14:e0217996.
PubMed Abstract available

DAMANKA SA, Kwofie S, Dennis FE, Lartey BL, et al
Whole genome characterization and evolutionary analysis of OP354-like P[8] Rotavirus A strains isolated from Ghanaian children with diarrhoea.
PLoS One. 2019;14:e0218348.
PubMed Abstract available

ROZENFELD C, Blanca J, Gallego V, Garcia-Carpintero V, et al
De novo European eel transcriptome provides insights into the evolutionary history of duplicated genes in teleost lineages.
PLoS One. 2019;14:e0218085.
PubMed Abstract available

VIDOTTI MS, Matias FI, Alves FC, Perez-Rodriguez P, et al
Maize responsiveness to Azospirillum brasilense: Insights into genetic control, heterosis and genomic prediction.
PLoS One. 2019;14:e0217571.
PubMed Abstract available

HE M, Yao Y, Li Y, Yang M, et al
Comprehensive transcriptome analysis reveals genes potentially involved in isoflavone biosynthesis in Pueraria thomsonii Benth.
PLoS One. 2019;14:e0217593.
PubMed Abstract available

FREDRICH B, Schmohl M, Junge O, Gundlach S, et al
VarWatch-A stand-alone software tool for variant matching.
PLoS One. 2019;14:e0215618.
PubMed Abstract available

NEWTON R, Wernisch L
A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes.
PLoS One. 2019;14:e0213221.
PubMed Abstract available

FAMILARI M, Naav A, Erlandsson L, de Iongh RU, et al
Exposure of trophoblast cells to fine particulate matter air pollution leads to growth inhibition, inflammation and ER stress.
PLoS One. 2019;14:e0218799.
PubMed Abstract available

REDDY RB, Khora SS, Suresh A
Molecular prognosticators in clinically and pathologically distinct cohorts of head and neck squamous cell carcinoma-A meta-analysis approach.
PLoS One. 2019;14:e0218989.
PubMed Abstract available

ZHOU Z, Li K, Sun Y, Shi J, et al
Molecular epidemiology and risk factors of Anaplasma spp., Babesia spp. and Theileria spp. infection in cattle in Chongqing, China.
PLoS One. 2019;14:e0215585.
PubMed Abstract available

MCGIRR JA, Martin CH
Hybrid gene misregulation in multiple developing tissues within a recent adaptive radiation of Cyprinodon pupfishes.
PLoS One. 2019;14:e0218899.
PubMed Abstract available

ZIMMERMANN HH, Harms L, Epp LS, Mewes N, et al
Chloroplast and mitochondrial genetic variation of larches at the Siberian tundra-taiga ecotone revealed by de novo assembly.
PLoS One. 2019;14:e0216966.
PubMed Abstract available

AHMED AE, Heldenbrand J, Asmann Y, Fadlelmola FM, et al
Managing genomic variant calling workflows with Swift/T.
PLoS One. 2019;14:e0211608.
PubMed Abstract available

PETRETTO A, Bruschi M, Pratesi F, Croia C, et al
Neutrophil extracellular traps (NET) induced by different stimuli: A comparative proteomic analysis.
PLoS One. 2019;14:e0218946.
PubMed Abstract available

RATHINAM M, Mishra P, Vasudevan M, Budhwar R, et al
Comparative transcriptome analysis of pigeonpea, Cajanus cajan (L.) and one of its wild relatives Cajanus platycarpus (Benth.) Maesen.
PLoS One. 2019;14:e0218731.
PubMed Abstract available

HUA Z, Early MJ
Closing target trimming and CTTdocker programs for discovering hidden superfamily loci in genomes.
PLoS One. 2019;14:e0209468.
PubMed Abstract available

RONCALLO PF, Beaufort V, Larsen AO, Dreisigacker S, et al
Genetic diversity and linkage disequilibrium using SNP (KASP) and AFLP markers in a worldwide durum wheat (Triticum turgidum L. var durum) collection.
PLoS One. 2019;14:e0218562.
PubMed Abstract available

CRESPO-PIAZUELO D, Criado-Mesas L, Revilla M, Castello A, et al
Indel detection from Whole Genome Sequencing data and association with lipid metabolism in pigs.
PLoS One. 2019;14:e0218862.
PubMed Abstract available

HEISSEL S, Frederiksen SJ, Bunkenborg J, Hojrup P, et al
Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications.
PLoS One. 2019;14:e0218374.
PubMed Abstract available

MAY M, Beauchemin M, Vary C, Barlow D, et al
The antipsychotic medication, risperidone, causes global immunosuppression in healthy mice.
PLoS One. 2019;14:e0218937.
PubMed Abstract available

GAUCH HG JR, Qian S, Piepho HP, Zhou L, et al
Consequences of PCA graphs, SNP codings, and PCA variants for elucidating population structure.
PLoS One. 2019;14:e0218306.
PubMed Abstract available

NUNES QM, Su D, Brownridge PJ, Simpson DM, et al
The heparin-binding proteome in normal pancreas and murine experimental acute pancreatitis.
PLoS One. 2019;14:e0217633.
PubMed Abstract available

TUMENDEMBEREL O, Zedrosser A, Proctor MF, Reynolds HV, et al
Phylogeography, genetic diversity, and connectivity of brown bear populations in Central Asia.
PLoS One. 2019;14:e0220746.
PubMed Abstract available

PALANIAPPAN M, Nguyen L, Grimm SL, Xi Y, et al
The genomic landscape of estrogen receptor alpha binding sites in mouse mammary gland.
PLoS One. 2019;14:e0220311.
PubMed Abstract available

KUO PJ, Rau CS, Wu SC, Lu TH, et al
Metagenomic analysis of the effects of toll-like receptors on bacterial infection in the peritoneal cavity following cecum ligation and puncture in mice.
PLoS One. 2019;14:e0220398.
PubMed Abstract available

PLATZER A, Nussbaumer T, Karonitsch T, Smolen JS, et al
Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns.
PLoS One. 2019;14:e0219698.
PubMed Abstract available

ALLEVA R, Tognu A, Tomasetti M, Benassi MS, et al
Effect of different anaesthetic techniques on gene expression profiles in patients who underwent hip arthroplasty.
PLoS One. 2019;14:e0219113.
PubMed Abstract available

ALDASORO M, Garin I, Vallejo N, Baroja U, et al
Gaining ecological insight on dietary allocation among horseshoe bats through molecular primer combination.
PLoS One. 2019;14:e0220081.
PubMed Abstract available

SHEAHAN T, Hakstol R, Kailasam S, Glaister GD, et al
Rapid metagenomics analysis of EMS vehicles for monitoring pathogen load using nanopore DNA sequencing.
PLoS One. 2019;14:e0219961.
PubMed Abstract available

LIND AP, Anderson PC
Predicting drug activity against cancer cells by random forest models based on minimal genomic information and chemical properties.
PLoS One. 2019;14:e0219774.
PubMed Abstract available

KRIZOVA P, Honskus M
Genomic surveillance of invasive meningococcal disease in the Czech Republic, 2015-2017.
PLoS One. 2019;14:e0219477.
PubMed Abstract available

NARAYAN R, Olsson N, Wagar LE, Medeiros BC, et al
Acute myeloid leukemia immunopeptidome reveals HLA presentation of mutated nucleophosmin.
PLoS One. 2019;14:e0219547.
PubMed Abstract available

RODY WJ JR, Chamberlain CA, Emory-Carter AK, McHugh KP, et al
The proteome of extracellular vesicles released by clastic cells differs based on their substrate.
PLoS One. 2019;14:e0219602.
PubMed Abstract available

WANG W, Cao L, Sun W, Xin J, et al
Sequence and phylogenetic analysis of novel porcine parvovirus 7 isolates from pigs in Guangxi, China.
PLoS One. 2019;14:e0219560.
PubMed Abstract available

ERLANDSON MA, Mori BA, Coutu C, Holowachuk J, et al
Examining population structure of a bertha armyworm, Mamestra configurata (Lepidoptera: Noctuidae), outbreak in western North America: Implications for gene flow and dispersal.
PLoS One. 2019;14:e0218993.
PubMed Abstract available

DAMANKA SA, Agbemabiese CA, Dennis FE, Lartey BL, et al
Genetic analysis of Ghanaian G1P[8] and G9P[8] rotavirus A strains reveals the impact of P[8] VP4 gene polymorphism on P-genotyping.
PLoS One. 2019;14:e0218790.
PubMed Abstract available

MINE J, Uchida Y, Sharshov K, Sobolev I, et al
Phylogeographic evidence for the inter- and intracontinental dissemination of avian influenza viruses via migration flyways.
PLoS One. 2019;14:e0218506.
PubMed Abstract available

LYKE MM, Di Fiore A, Fierer N, Madden AA, et al
Metagenomic analyses reveal previously unrecognized variation in the diets of sympatric Old World monkey species.
PLoS One. 2019;14:e0218245.
PubMed Abstract available

TARCA AL, Romero R, Benshalom-Tirosh N, Than NG, et al
The prediction of early preeclampsia: Results from a longitudinal proteomics study.
PLoS One. 2019;14:e0217273.
PubMed Abstract available

REN A, Du K, Jia X, Yang R, et al
Genetic diversity and population structure of four Chinese rabbit breeds.
PLoS One. 2019;14:e0222503.
PubMed Abstract available

KIM YH, Song Y, Kim JK, Kim TM, et al
False-negative errors in next-generation sequencing contribute substantially to inconsistency of mutation databases.
PLoS One. 2019;14:e0222535.
PubMed Abstract available

ALLEN KD, McKernan K, Pauli C, Roe J, et al
Genomic characterization of the complete terpene synthase gene family from Cannabis sativa.
PLoS One. 2019;14:e0222363.
PubMed Abstract available

SCHEIFLER M, Ruiz-Rodriguez M, Sanchez-Brosseau S, Magnanou E, et al
Characterization of ecto- and endoparasite communities of wild Mediterranean teleosts by a metabarcoding approach.
PLoS One. 2019;14:e0221475.
PubMed Abstract available

NOMOTO Y, Kubota Y, Ohnishi Y, Kasahara K, et al
Gene Cascade Finder: A tool for identification of gene cascades and its application in Caenorhabditis elegans.
PLoS One. 2019;14:e0215187.
PubMed Abstract available

HUTCHISON JR, Brooks SM, Kennedy ZC, Pope TR, et al
Polysaccharide-based liquid storage and transport media for non-refrigerated preservation of bacterial pathogens.
PLoS One. 2019;14:e0221831.
PubMed Abstract available

PAULL ML, Johnston T, Ibsen KN, Bozekowski JD, et al
A general approach for predicting protein epitopes targeted by antibody repertoires using whole proteomes.
PLoS One. 2019;14:e0217668.
PubMed Abstract available

TEKEDAR HC, Kumru S, Blom J, Perkins AD, et al
Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally.
PLoS One. 2019;14:e0221018.
PubMed Abstract available

LIU Y, Li L, Huang T, Wang R, et al
Comparative multi-omics systems analysis reveal the glycolysis / gluconeogenesis signal pathway play an important role in virulence attenuation in fish-derived GBS YM001.
PLoS One. 2019;14:e0221634.
PubMed Abstract available

CALDERON-RODRIGUEZ SI, Sanabria-Salas MC, Umana-Perez A
A comparative proteomic study of plasma in Colombian childhood acute lymphoblastic leukemia.
PLoS One. 2019;14:e0221509.
PubMed Abstract available

CARBONE F, Bruno L, Perrotta G, Bitonti MB, et al
Identification of miRNAs involved in fruit ripening by deep sequencing of Olea europaea L. transcriptome.
PLoS One. 2019;14:e0221460.
PubMed Abstract available

CHEN X, Chen Z, Huang W, Fu H, et al
Proteomic analysis of gametophytic sex expression in the fern Ceratopteris thalictroides.
PLoS One. 2019;14:e0221470.
PubMed Abstract available

LAU BYC, Othman A
Evaluation of sodium deoxycholate as solubilization buffer for oil palm proteomics analysis.
PLoS One. 2019;14:e0221052.
PubMed Abstract available

GONZALEZ C, Gallagher AJ, Caballero S
Conservation genetics of the bonnethead shark Sphyrna tiburo in Bocas del Toro, Panama: Preliminary evidence of a unique stock.
PLoS One. 2019;14:e0220737.
PubMed Abstract available

HINDERER EW 3RD, Flight RM, Dubey R, MacLeod JN, et al
Advances in gene ontology utilization improve statistical power of annotation enrichment.
PLoS One. 2019;14:e0220728.
PubMed Abstract available

AL-SNAN NR, Messaoudi S, R Babu S, Bakhiet M, et al
Population genetic data of the 21 autosomal STRs included in GlobalFiler kit of a population sample from the Kingdom of Bahrain.
PLoS One. 2019;14:e0220620.
PubMed Abstract available

MULTINI LC, de Souza ALDS, Marrelli MT, Wilke ABB, et al
Population structuring of the invasive mosquito Aedes albopictus (Diptera: Culicidae) on a microgeographic scale.
PLoS One. 2019;14:e0220773.
PubMed Abstract available

KUMTHIP K, Khamrin P, Ushijima H, Maneekarn N, et al
Enteric and non-enteric adenoviruses associated with acute gastroenteritis in pediatric patients in Thailand, 2011 to 2017.
PLoS One. 2019;14:e0220263.
PubMed Abstract available

PANTANO E, Marchi S, Biagini M, Di Fede M, et al
NHBA is processed by kallikrein from human saliva.
PLoS One. 2019;14:e0203234.
PubMed Abstract available

KOTZE A, Smith RM, Moodley Y, Luikart G, et al
Lessons for conservation management: Monitoring temporal changes in genetic diversity of Cape mountain zebra (Equus zebra zebra).
PLoS One. 2019;14:e0220331.
PubMed Abstract available

IMRIE L, Le Bihan T, O'Toole A, Hickner PV, et al
Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics.
PLoS One. 2019;14:e0220225.
PubMed Abstract available

MALHOTRA S, Alsulami AF, Heiyun Y, Ochoa BM, et al
Understanding the impacts of missense mutations on structures and functions of human cancer-related genes: A preliminary computational analysis of the COSMIC Cancer Gene Census.
PLoS One. 2019;14:e0219935.
PubMed Abstract available

CHUNG SW, Yu DJ, Oh HD, Ahn JH, et al
Transcriptional regulation of abscisic acid biosynthesis and signal transduction, and anthocyanin biosynthesis in 'Bluecrop' highbush blueberry fruit during ripening.
PLoS One. 2019;14:e0220015.
PubMed Abstract available

BOSE ME, Shrivastava S, He J, Nelson MI, et al
Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes.
PLoS One. 2019;14:e0220057.
PubMed Abstract available

GAONA O, Gomez-Acata ES, Cerqueda-Garcia D, Neri-Barrios CX, et al
Fecal microbiota of different reproductive stages of the central population of the lesser-long nosed bat, Leptonycteris yerbabuenae.
PLoS One. 2019;14:e0219982.
PubMed Abstract available

CHEN Y, Zhang B, Li C, Lei C, et al
A comprehensive expression analysis of the expansin gene family in potato (Solanum tuberosum) discloses stress-responsive expansin-like B genes for drought and heat tolerances.
PLoS One. 2019;14:e0219837.
PubMed Abstract available

BARRETO FZ, Rosa JRBF, Balsalobre TWA, Pastina MM, et al
A genome-wide association study identified loci for yield component traits in sugarcane (Saccharum spp.).
PLoS One. 2019;14:e0219843.
PubMed Abstract available

GARITA-CAMBRONERO J, Sena-Velez M, Ferragud E, Sabuquillo P, et al
Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants.
PLoS One. 2019;14:e0219797.
PubMed Abstract available

PLOYPETCH S, Roytrakul S, Jaresitthikunchai J, Phaonakrop N, et al
Salivary proteomics of canine oral tumors using MALDI-TOF mass spectrometry and LC-tandem mass spectrometry.
PLoS One. 2019;14:e0219390.
PubMed Abstract available

TAN Z, Dong W, Ding Y, Ding X, et al
Changes in cecal microbiota community of suckling piglets infected with porcine epidemic diarrhea virus.
PLoS One. 2019;14:e0219868.
PubMed Abstract available

RUFO R, Alvaro F, Royo C, Soriano JM, et al
From landraces to improved cultivars: Assessment of genetic diversity and population structure of Mediterranean wheat using SNP markers.
PLoS One. 2019;14:e0219867.
PubMed Abstract available

PAN L, Yu X, Shao J, Liu Z, et al
Transcriptomic profiling and analysis of differentially expressed genes in asparagus bean (Vigna unguiculata ssp. sesquipedalis) under salt stress.
PLoS One. 2019;14:e0219799.
PubMed Abstract available

WIEBEN ED, Aleff RA, Basu S, Sarangi V, et al
Amplification-free long-read sequencing of TCF4 expanded trinucleotide repeats in Fuchs Endothelial Corneal Dystrophy.
PLoS One. 2019;14:e0219446.
PubMed Abstract available

MATHEW R, Opperman CH
The genome of the migratory nematode, Radopholus similis, reveals signatures of close association to the sedentary cyst nematodes.
PLoS One. 2019;14:e0224391.
PubMed Abstract available

MOURA EG, Pamplona AKA, Balestre M
Functional models in genome-wide selection.
PLoS One. 2019;14:e0222699.
PubMed Abstract available

BLETZ MC, Bunk B, Sproer C, Biwer P, et al
Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts.
PLoS One. 2019;14:e0223747.
PubMed Abstract available

GUZMAN-FLORES JE, Steinemann-Hernandez L, Gonzalez de la Vara LE, Gavilanes-Ruiz M, et al
Proteomic analysis of Escherichia coli detergent-resistant membranes (DRM).
PLoS One. 2019;14:e0223794.
PubMed Abstract available

VAN DER MEEREN LE, Kluiver J, Rutgers B, Alsagoor Y, et al
A super-SILAC based proteomics analysis of diffuse large B-cell lymphoma-NOS patient samples to identify new proteins that discriminate GCB and non-GCB lymphomas.
PLoS One. 2019;14:e0223260.
PubMed Abstract available

ANDREEV VP, Liu G, Zee J, Henn L, et al
Clustering of the structures by using "snakes-&-dragons" approach, or correlation matrix as a signal.
PLoS One. 2019;14:e0223267.
PubMed Abstract available

JANGTARWAN K, Koomgun T, Prasongmaneerut T, Thongchum R, et al
Take one step backward to move forward: Assessment of genetic diversity and population structure of captive Asian woolly-necked storks (Ciconia episcopus).
PLoS One. 2019;14:e0223726.
PubMed Abstract available

ZHENG L, Zhang Y, Hao S, Chen L, et al
A proteomic clock for malignant gliomas: The role of the environment in tumorigenesis at the presymptomatic stage.
PLoS One. 2019;14:e0223558.
PubMed Abstract available

SHRESTHA A, Champagne DE, Culbreath AK, Abney MR, et al
Comparison of transcriptomes of an orthotospovirus vector and non-vector thrips species.
PLoS One. 2019;14:e0223438.
PubMed Abstract available

CHEN S, Soehnlen M, Blom J, Terrapon N, et al
Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains.
PLoS One. 2019;14:e0222648.
PubMed Abstract available

ABDELATTY AM, Mohamed SA, Moustafa MMA, Al-Mokaddem AK, et al
Nutrigenomic effect of conjugated linoleic acid on growth and meat quality indices of growing rabbit.
PLoS One. 2019;14:e0222404.
PubMed Abstract available

PILAAR BIRCH SE, Atici L, Erdogu B
Spread of domestic animals across Neolithic western Anatolia: New stable isotope evidence from Ugurlu Hoyuk, the island of Gokceada, Turkey.
PLoS One. 2019;14:e0222319.
PubMed Abstract available

HENDRIKSEN RS, Lukjancenko O, Munk P, Hjelmso MH, et al
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach.
PLoS One. 2019;14:e0222531.
PubMed Abstract available

SAKUMA K, Ishida R, Kodama T, Takada Y, et al
Reconstructing the population history of the sandy beach amphipod Haustorioides japonicus using the calibration of demographic transition (CDT) approach.
PLoS One. 2019;14:e0223624.
PubMed Abstract available

ALLEGRINI M, Gomez EDV, Smalla K, Zabaloy MC, et al
Suppression treatment differentially influences the microbial community and the occurrence of broad host range plasmids in the rhizosphere of the model cover crop Avena sativa L.
PLoS One. 2019;14:e0223600.
PubMed Abstract available

ANAGNOSTOU P, Dominici V, Battaggia C, Lisi A, et al
Inter-individual genomic heterogeneity within European population isolates.
PLoS One. 2019;14:e0214564.
PubMed Abstract available

ALVAREZ-VARAS R, Veliz D, Velez-Rubio GM, Fallabrino A, et al
Identifying genetic lineages through shape: An example in a cosmopolitan marine turtle species using geometric morphometrics.
PLoS One. 2019;14:e0223587.
PubMed Abstract available

KOTSIAS M, Blanas A, van Vliet SJ, Pirro M, et al
Method comparison for N-glycan profiling: Towards the standardization of glycoanalytical technologies for cell line analysis.
PLoS One. 2019;14:e0223270.
PubMed Abstract available

VIJAYVARGIYA P, Jeraldo PR, Thoendel MJ, Greenwood-Quaintance KE, et al
Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples.
PLoS One. 2019;14:e0222915.
PubMed Abstract available

LABASTIDA-ESTRADA E, Machkour-M'Rabet S, Carrillo L, Henaut Y, et al
Genetic structure of Mexican lionfish populations in the southwest Gulf of Mexico and the Caribbean Sea.
PLoS One. 2019;14:e0222997.
PubMed Abstract available

HAYASHI N, Yamaguchi S, Rodenburg F, Ying Wong S, et al
Multiple biomarkers of sepsis identified by novel time-lapse proteomics of patient serum.
PLoS One. 2019;14:e0222403.
PubMed Abstract available

TELFER E, Graham N, Macdonald L, Li Y, et al
A high-density exome capture genotype-by-sequencing panel for forestry breeding in Pinus radiata.
PLoS One. 2019;14:e0222640.
PubMed Abstract available

DOIDY J, Vidal U, Lemoine R
Sugar transporters in Fabaceae, featuring SUT MST and SWEET families of the model plant Medicago truncatula and the agricultural crop Pisum sativum.
PLoS One. 2019;14:e0223173.
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JARMAN R, Mattioni C, Russell K, Chambers FM, et al
DNA analysis of Castanea sativa (sweet chestnut) in Britain and Ireland: Elucidating European origins and genepool diversity.
PLoS One. 2019;14:e0222936.
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WESTBURY MV, Petersen B, Lorenzen ED
Genomic analyses reveal an absence of contemporary introgressive admixture between fin whales and blue whales, despite known hybrids.
PLoS One. 2019;14:e0222004.
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BALDO D, Araujo-Vieira K, Cardozo D, Borteiro C, et al
A review of the elusive bicolored iris Snouted Treefrogs (Anura: Hylidae:Scinax uruguayus group).
PLoS One. 2019;14:e0222131.
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ADETUNJI MO, Lamont SJ, Abasht B, Schmidt CJ, et al
Variant analysis pipeline for accurate detection of genomic variants from transcriptome sequencing data.
PLoS One. 2019;14:e0216838.
PubMed Abstract available

GUIRRO M, Costa A, Gual-Grau A, Herrero P, et al
Effects from diet-induced gut microbiota dysbiosis and obesity can be ameliorated by fecal microbiota transplantation: A multiomics approach.
PLoS One. 2019;14:e0218143.
PubMed Abstract available

YANG M, Gong L, Sui J, Li X, et al
The complete mitochondrial genome of Calyptogena marissinica (Heterodonta: Veneroida: Vesicomyidae): Insight into the deep-sea adaptive evolution of vesicomyids.
PLoS One. 2019;14:e0217952.
PubMed Abstract available

YAMAGUCHI MS, Ganz HH, Cho AW, Zaw TH, et al
Bacteria isolated from Bengal cat (Felis catus x Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling.
PLoS One. 2019;14:e0216846.
PubMed Abstract available

MALDONADO MBC, de Rezende Neto NB, Nagamatsu ST, Carazzolle MF, et al
Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation.
PLoS One. 2019;14:e0222329.
PubMed Abstract available

IKUNO A, Akeda K, Takebayashi SI, Shimaoka M, et al
Genome-wide analysis of DNA methylation profile identifies differentially methylated loci associated with human intervertebral disc degeneration.
PLoS One. 2019;14:e0222188.
PubMed Abstract available

MERSHA FB, Cortes LK, Luck AN, McClung CM, et al
Computational and experimental analysis of the glycophosphatidylinositol-anchored proteome of the human parasitic nematode Brugia malayi.
PLoS One. 2019;14:e0216849.
PubMed Abstract available

EVANS BJ, Gansauge MT, Stanley EL, Furman BLS, et al
Xenopus fraseri: Mr. Fraser, where did your frog come from?
PLoS One. 2019;14:e0220892.
PubMed Abstract available

KING CH, Desai H, Sylvetsky AC, LoTempio J, et al
Baseline human gut microbiota profile in healthy people and standard reporting template.
PLoS One. 2019;14:e0206484.
PubMed Abstract available

PLON S, Thakur V, Parr L, Lavery SD, et al
Phylogeography of the dugong (Dugong dugon) based on historical samples identifies vulnerable Indian Ocean populations.
PLoS One. 2019;14:e0219350.
PubMed Abstract available

KAMMONEN JI, Smolander OP, Paulin L, Pereira PAB, et al
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output.
PLoS One. 2019;14:e0216885.
PubMed Abstract available

SCHAFFAR R, Bouchardy C, Chappuis PO, Bodmer A, et al
A population-based cohort of young women diagnosed with breast cancer in Geneva, Switzerland.
PLoS One. 2019;14:e0222136.
PubMed Abstract available

MORACH M, Kappeli N, Hochreutener M, Johler S, et al
Microarray based genetic profiling of Staphylococcus aureus isolated from abattoir byproducts of pork origin.
PLoS One. 2019;14:e0222036.
PubMed Abstract available

KAUR H, Bhalla S, Raghava GPS
Classification of early and late stage liver hepatocellular carcinoma patients from their genomics and epigenomics profiles.
PLoS One. 2019;14:e0221476.
PubMed Abstract available

DANCZAK RE, Johnston MD, Kenah C, Slattery M, et al
Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages.
PLoS One. 2019;14:e0221694.
PubMed Abstract available

MARTINEZ-VILLEGAS L, Assis-Geraldo J, Koerich LB, Collier TC, et al
Characterization of the complete mitogenome of Anopheles aquasalis, and phylogenetic divergences among Anopheles from diverse geographic zones.
PLoS One. 2019;14:e0219523.
PubMed Abstract available

TRUNG NV, Hoi LT, Cuong DD, Ha DT, et al
Analysis of the 56-kDa type specific antigen gene of Orientia tsutsugamushi from northern Vietnam.
PLoS One. 2019;14:e0221588.
PubMed Abstract available

RODRIGUEZ-CASTRO L, Mendez V, Duran RE, Seeger M, et al
Long-chain flavodoxin FldX1 improves Paraburkholderia xenovorans LB400 tolerance to oxidative stress caused by paraquat and H2O2.
PLoS One. 2019;14:e0221881.
PubMed Abstract available

KARMACHARYA D, Manandhar P, Manandhar S, Sherchan AM, et al
Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal.
PLoS One. 2019;14:e0221868.
PubMed Abstract available

NAM O, Park JM, Lee H, Jin E, et al
De novo transcriptome profile of coccolithophorid alga Emiliania huxleyi CCMP371 at different calcium concentrations with proteome analysis.
PLoS One. 2019;14:e0221938.
PubMed Abstract available

IMAI A, Kuniga T, Yoshioka T, Nonaka K, et al
Single-step genomic prediction of fruit-quality traits using phenotypic records of non-genotyped relatives in citrus.
PLoS One. 2019;14:e0221880.
PubMed Abstract available

PICARD C, Poirier A, Belanger S, Labonte A, et al
Proprotein convertase subtilisin/kexin type 9 (PCSK9) in Alzheimer's disease: A genetic and proteomic multi-cohort study.
PLoS One. 2019;14:e0220254.
PubMed Abstract available

MESZAROS VA, Miller-Dickson MD, Ogbunugafor CB
Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes.
PLoS One. 2019;14:e0220891.
PubMed Abstract available

RICHTER J, Tryfonos C, Christodoulou C
Molecular epidemiology of enteroviruses in Cyprus 2008-2017.
PLoS One. 2019;14:e0220938.
PubMed Abstract available

YAMASHITA H, Katai H, Kawaguchi L, Nagano AJ, et al
Analyses of single nucleotide polymorphisms identified by ddRAD-seq reveal genetic structure of tea germplasm and Japanese landraces for tea breeding.
PLoS One. 2019;14:e0220981.
PubMed Abstract available

FRADERA-SOLA A, Thomas A, Gasior D, Harper J, et al
Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne).
PLoS One. 2019;14:e0220518.
PubMed Abstract available

LIAO Z, Jiang YT, Sun Q, Fan MH, et al
Microstructure and in-depth proteomic analysis of Perna viridis shell.
PLoS One. 2019;14:e0219699.
PubMed Abstract available

COUVIN D, Reynaud Y, Rastogi N
Two tales: Worldwide distribution of Central Asian (CAS) versus ancestral East-African Indian (EAI) lineages of Mycobacterium tuberculosis underlines a remarkable cleavage for phylogeographical, epidemiological and demographical characteristics.
PLoS One. 2019;14:e0219706.
PubMed Abstract available

YAKKALA H, Samantarrai D, Gribskov M, Siddavattam D, et al
Comparative genome analysis reveals niche-specific genome expansion in Acinetobacter baumannii strains.
PLoS One. 2019;14:e0218204.
PubMed Abstract available

DILLON EL, Soman KV, Wiktorowicz JE, Sur R, et al
Proteomic investigation of human skeletal muscle before and after 70 days of head down bed rest with or without exercise and testosterone countermeasures.
PLoS One. 2019;14:e0217690.
PubMed Abstract available

XUE H, Tian X, Zhang K, Li W, et al
Mapping developmental QTL for plant height in soybean [Glycine max (L.) Merr.] using a four-way recombinant inbred line population.
PLoS One. 2019;14:e0224897.
PubMed Abstract available

WU Z, Zhang X, He Z, Hou L, et al
Identifying candidate diagnostic markers for early stage of non-small cell lung cancer.
PLoS One. 2019;14:e0225080.
PubMed Abstract available

PRUSSING C, Emerson KJ, Bickersmith SA, Sallum MAM, et al
Minimal genetic differentiation of the malaria vector Nyssorhynchus darlingi associated with forest cover level in Amazonian Brazil.
PLoS One. 2019;14:e0225005.
PubMed Abstract available

ANDRADE LRB, Sousa MBE, Oliveira EJ, Resende MDV, et al
Cassava yield traits predicted by genomic selection methods.
PLoS One. 2019;14:e0224920.
PubMed Abstract available

LIAO F, Chen H, Xie J, Zhan S, et al
Molecular epidemiological characteristics of dengue virus carried by 34 patients in Guangzhou in 2018.
PLoS One. 2019;14:e0224676.
PubMed Abstract available

DALMOLIN DA, Tozetti AM, Ramos Pereira MJ
Taxonomic and functional anuran beta diversity of a subtropical metacommunity respond differentially to environmental and spatial predictors.
PLoS One. 2019;14:e0214902.
PubMed Abstract available

BUGLIONE M, Petrelli S, Maselli V, Trapanese M, et al
Fixation of genetic variation and optimization of gene expression: The speed of evolution in isolated lizard populations undergoing Reverse Island Syndrome.
PLoS One. 2019;14:e0224607.
PubMed Abstract available

WHITT CE, Tauer LW, Huson H
Bull efficiency using dairy genetic traits.
PLoS One. 2019;14:e0223436.
PubMed Abstract available

PANGA V, Kallor AA, Nair A, Harshan S, et al
Mitochondrial dysfunction in rheumatoid arthritis: A comprehensive analysis by integrating gene expression, protein-protein interactions and gene ontology data.
PLoS One. 2019;14:e0224632.
PubMed Abstract available

LUO Y, Wu Y, Qian E, Wang Q, et al
Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei.
PLoS One. 2019;14:e0224601.
PubMed Abstract available

MOREYRA NN, Mensch J, Hurtado J, Almeida F, et al
What does mitogenomics tell us about the evolutionary history of the Drosophila buzzatii cluster (repleta group)?
PLoS One. 2019;14:e0220676.
PubMed Abstract available

MANSOOR S, Ahmed N, Sharma V, Jan S, et al
Elucidating genetic variability and population structure in Venturia inaequalis associated with apple scab diseaseusing SSR markers.
PLoS One. 2019;14:e0224300.
PubMed Abstract available

KATSOGIANNOU M, Boyer JB, Valdeolivas A, Remy E, et al
Integrative proteomic and phosphoproteomic profiling of prostate cell lines.
PLoS One. 2019;14:e0224148.
PubMed Abstract available

WANG X, Cheng Y, Yang C, Yang C, et al
QTL mapping for aluminum tolerance in RIL population of soybean (Glycine max L.) by RAD sequencing.
PLoS One. 2019;14:e0223674.
PubMed Abstract available

TAKEDA S, Yoza M, Amano T, Ohshima I, et al
Comparative transcriptome analysis of galls from four different host plants suggests the molecular mechanism of gall development.
PLoS One. 2019;14:e0223686.
PubMed Abstract available

VAN RIJN AL, van Boheemen S, Sidorov I, Carbo EC, et al
The respiratory virome and exacerbations in patients with chronic obstructive pulmonary disease.
PLoS One. 2019;14:e0223952.
PubMed Abstract available

CRATES R, Olah G, Adamski M, Aitken N, et al
Genomic impact of severe population decline in a nomadic songbird.
PLoS One. 2019;14:e0223953.
PubMed Abstract available

AMARAL CRL, Chaves ACS, Borges Junior VNT, Pereira F, et al
Amphibians on the hotspot: Molecular biology and conservation in the South American Atlantic Rainforest.
PLoS One. 2019;14:e0224320.
PubMed Abstract available

PEREZ-MUNOZ ME, McKnite AM, Williams EG, Auwerx J, et al
Diet modulates cecum bacterial diversity and physiological phenotypes across the BXD mouse genetic reference population.
PLoS One. 2019;14:e0224100.
PubMed Abstract available

MANDEL JR, Major CK, Bayer RJ, Moore JE, et al
Clonal diversity and spatial genetic structure in the long-lived herb, Prairie trillium.
PLoS One. 2019;14:e0224123.
PubMed Abstract available

CLAVIJO MJ, Sreevatsan S, Johnson TJ, Rovira A, et al
Molecular epidemiology of Mycoplasma hyorhinis porcine field isolates in the United States.
PLoS One. 2019;14:e0223653.
PubMed Abstract available

DIAKITE A, Dubourg G, Dione N, Afouda P, et al
Extensive culturomics of 8 healthy samples enhances metagenomics efficiency.
PLoS One. 2019;14:e0223543.
PubMed Abstract available

SILVA C, Calva E, Fernandez-Mora M, Puente JL, et al
Population analysis of D6-like plasmid prophage variants associated with specific IncC plasmid types in the emerging Salmonella Typhimurium ST213 genotype.
PLoS One. 2019;14:e0223975.
PubMed Abstract available

BACHTIAR M, Jin Y, Wang J, Tan TW, et al
Architecture of population-differentiated polymorphisms in the human genome.
PLoS One. 2019;14:e0224089.
PubMed Abstract available

CAICEDO-GARZON V, Salgado-Roa FC, Sanchez-Herrera M, Hernandez C, et al
Genetic diversification of Panstrongylus geniculatus (Reduviidae: Triatominae) in northern South America.
PLoS One. 2019;14:e0223963.
PubMed Abstract available

BEST LG, Balakrishnan P, Cole SA, Haack K, et al
Genetic analysis of hsCRP in American Indians: The Strong Heart Family Study.
PLoS One. 2019;14:e0223574.
PubMed Abstract available

GUO B, Li D, Lin S, Li Y, et al
Regulation of nitrogen availability results in changes in grain protein content and grain storage subproteomes in barley (Hordeum vulgare L.).
PLoS One. 2019;14:e0223831.
PubMed Abstract available

MEHRBAN H, Lee DH, Naserkheil M, Moradi MH, et al
Comparison of conventional BLUP and single-step genomic BLUP evaluations for yearling weight and carcass traits in Hanwoo beef cattle using single trait and multi-trait models.
PLoS One. 2019;14:e0223352.
PubMed Abstract available

ORLOWSKA K, Swigonska S, Sadowska A, Ruszkowska M, et al
Proteomic changes of aryl hydrocarbon receptor (AhR)-silenced porcine granulosa cells exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD).
PLoS One. 2019;14:e0223420.
PubMed Abstract available

CASARIL AE, Alonso DP, Franco KG, Alvarez MVN, et al
Macrogeographic genetic structure of Lutzomyia longipalpis complex populations using Next Generation Sequencing.
PLoS One. 2019;14:e0223277.
PubMed Abstract available

LOPES LD, Weisberg AJ, Davis EW 2nd, Varize CS, et al
Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil.
PLoS One. 2019;14:e0223269.
PubMed Abstract available

REIS-CUNHA JL, Bartholomeu DC, Manson AL, Earl AM, et al
ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database.
PLoS One. 2019;14:e0223364.
PubMed Abstract available

WEI X, You L, Wang D, Huang H, et al
Antimicrobial resistance and molecular genotyping of Salmonella enterica serovar Enteritidis clinical isolates from Guizhou province of Southwestern China.
PLoS One. 2019;14:e0221492.
PubMed Abstract available

DIRAY-ARCE J, Knowles A, Suvorov A, O'Brien J, et al
Identification and evolutionary characterization of salt-responsive transcription factors in the succulent halophyte Suaeda fruticosa.
PLoS One. 2019;14:e0222940.
PubMed Abstract available

WEINSTEIN SY, Thrower FP, Nichols KM, Hale MC, et al
A large-scale chromosomal inversion is not associated with life history development in rainbow trout from Southeast Alaska.
PLoS One. 2019;14:e0223018.
PubMed Abstract available

ZHANG W, Hu C, Wang X, Bai S, et al
Role of GDF15 in methylseleninic acid-mediated inhibition of cell proliferation and induction of apoptosis in prostate cancer cells.
PLoS One. 2019;14:e0222812.
PubMed Abstract available

GARIBOLDI MC, Inserra PIF, Lucero S, Failla M, et al
Unexpected low genetic variation in the South American hystricognath rodent Lagostomus maximus (Rodentia: Chinchillidae).
PLoS One. 2019;14:e0221559.
PubMed Abstract available

ZUYKOVA EI, Bochkarev NA, Taylor DJ, Kotov AA, et al
Unexpected endemism in the Daphnia longispina complex (Crustacea: Cladocera) in Southern Siberia.
PLoS One. 2019;14:e0221527.
PubMed Abstract available

RUJIMONGKON K, Mungthin M, Tummatorn J, Ampawong S, et al
Proteomic analysis of Plasmodium falciparum response to isocryptolepine derivative.
PLoS One. 2019;14:e0220871.
PubMed Abstract available

ROCHA LS, Silva DM, Silva MP, Vidigal PMP, et al
Comparative genomics of Staphylococcus aureus associated with subclinical and clinical bovine mastitis.
PLoS One. 2019;14:e0220804.
PubMed Abstract available

SUNG JY, Shin HT, Sohn KA, Shin SY, et al
Assessment of intratumoral heterogeneity with mutations and gene expression profiles.
PLoS One. 2019;14:e0219682.
PubMed Abstract available

FROUIN J, Labeyrie A, Boisnard A, Sacchi GA, et al
Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains.
PLoS One. 2019;14:e0217516.
PubMed Abstract available

HUISMAN JLA, Majid A, van Hout R
The geographical configuration of a language area influences linguistic diversity.
PLoS One. 2019;14:e0217363.
PubMed Abstract available

REVECO-URZUA FE, Hofossaeter M, Rao Kovi M, Mydland LT, et al
Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses.
PLoS One. 2019;14:e0218360.
PubMed Abstract available

BERENS ME, Sood A, Barnholtz-Sloan JS, Graf JF, et al
Multiscale, multimodal analysis of tumor heterogeneity in IDH1 mutant vs wild-type diffuse gliomas.
PLoS One. 2019;14:e0219724.
PubMed Abstract available

COWAN K, Macluskie G, Finch M, Palmer CNA, et al
Application of pharmacogenomics and bioinformatics to exemplify the utility of human ex vivo organoculture models in the field of precision medicine.
PLoS One. 2019;14:e0226564.
PubMed Abstract available

HERVAS-MARIN D, Higgins F, Sanmartin O, Lopez-Guerrero JA, et al
Genome wide DNA methylation profiling identifies specific epigenetic features in high-risk cutaneous squamous cell carcinoma.
PLoS One. 2019;14:e0223341.
PubMed Abstract available

SILVA BSML, Heringer P, Dias GB, Svartman M, et al
De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines.
PLoS One. 2019;14:e0223466.
PubMed Abstract available

PAL A, Saha BK, Saha J
Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination.
PLoS One. 2019;14:e0219231.
PubMed Abstract available

SHAMS F, Dyer F, Thompson R, Duncan RP, et al
Application of DArT seq derived SNP tags for comparative genome analysis in fishes; An alternative pipeline using sequence data from a non-traditional model species, Macquaria ambigua.
PLoS One. 2019;14:e0226365.
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MICHAILIDOU S, Tsangaris GT, Tzora A, Skoufos I, et al
Analysis of genome-wide DNA arrays reveals the genomic population structure and diversity in autochthonous Greek goat breeds.
PLoS One. 2019;14:e0226179.
PubMed Abstract available

WOLOSZYNEK S, Mell JC, Zhao Z, Simpson G, et al
Exploring thematic structure and predicted functionality of 16S rRNA amplicon data.
PLoS One. 2019;14:e0219235.
PubMed Abstract available

MUSHTAQ H, Ahmed N, Al-Ars Z
SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework.
PLoS One. 2019;14:e0224784.
PubMed Abstract available

VIDMAN L, Kallberg D, Ryden P
Cluster analysis on high dimensional RNA-seq data with applications to cancer research - An evaluation study.
PLoS One. 2019;14:e0219102.
PubMed Abstract available

YOON JY, Sy K, Brezden-Masley C, Streutker CJ, et al
Histo- and immunohistochemistry-based estimation of the TCGA and ACRG molecular subtypes for gastric carcinoma and their prognostic significance: A single-institution study.
PLoS One. 2019;14:e0224812.
PubMed Abstract available

ASAF S, Khan A, Khan AL, Al-Harrasi A, et al
Complete Chloroplast Genomes of Vachellia nilotica and Senegalia senegal: Comparative Genomics and Phylogenomic Placement in a New Generic System.
PLoS One. 2019;14:e0225469.
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BANOS G, Clark EL, Bush SJ, Dutta P, et al
Genetic and genomic analyses underpin the feasibility of concomitant genetic improvement of milk yield and mastitis resistance in dairy sheep.
PLoS One. 2019;14:e0214346.
PubMed Abstract available

LIN Z, Xiong Y, Xue Y, Mao M, et al
Screening and characterization of long noncoding RNAs involved in the albinism of Ananas comosus var. bracteatus leaves.
PLoS One. 2019;14:e0225602.
PubMed Abstract available

ABBAS M, Matta J, Le T, Bensmail H, et al
Biomarker discovery in inflammatory bowel diseases using network-based feature selection.
PLoS One. 2019;14:e0225382.
PubMed Abstract available

MANDACARU SC, Queiroz RML, Alborghetti MR, de Oliveira LS, et al
Exoproteome profiling of Trypanosoma cruzi during amastigogenesis early stages.
PLoS One. 2019;14:e0225386.
PubMed Abstract available

WANG W, Liu Q, Wang Y, Piao H, et al
Verification of hub genes in the expression profile of aortic dissection.
PLoS One. 2019;14:e0224922.
PubMed Abstract available

BIAN J, Liang M, Ding S, Wang L, et al
iTRAQ-based high-throughput proteomics analysis reveals alterations of plasma proteins in patients infected with human bocavirus.
PLoS One. 2019;14:e0225261.
PubMed Abstract available

ECKSTROM K, Barlow JW
Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm.
PLoS One. 2019;14:e0219807.
PubMed Abstract available

BABA H, Kanamori H, Kudo H, Kuroki Y, et al
Genomic analysis of Shiga toxin-producing Escherichia coli from patients and asymptomatic food handlers in Japan.
PLoS One. 2019;14:e0225340.
PubMed Abstract available

AZEEZ OI, Myburgh JG, Bosman AM, Featherston J, et al
Next generation sequencing and RNA-seq characterization of adipose tissue in the Nile crocodile (Crocodylus niloticus) in South Africa: Possible mechanism(s) of pathogenesis and pathophysiology of pansteatitis.
PLoS One. 2019;14:e0225073.
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ROZOVA ON, Mustakhimov II, But SY, Reshetnikov AS, et al
Role of the malic enzyme in metabolism of the halotolerant methanotroph Methylotuvimicrobium alcaliphilum 20Z.
PLoS One. 2019;14:e0225054.
PubMed Abstract available

CREMER SE, Catalfamo JL, Goggs R, Seemann SE, et al
Proteomic profiling of the thrombin-activated canine platelet secretome (CAPS).
PLoS One. 2019;14:e0224891.
PubMed Abstract available

QIANG J, Khamis OAM, Jiang HJ, Cao ZM, et al
Effects of dietary supplementation with apple peel powder on the growth, blood and liver parameters, and transcriptome of genetically improved farmed tilapia (GIFT, Oreochromis niloticus).
PLoS One. 2019;14:e0224995.
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LI L, Wang F, Li X, Peng Y, et al
Comparative analysis of the accelerated aged seed transcriptome profiles of two maize chromosome segment substitution lines.
PLoS One. 2019;14:e0216977.
PubMed Abstract available

STEFANOVIC M, Djan M, Velickovic N, Beukovic D, et al
Positive selection and precipitation effects on the mitochondrial NADH dehydrogenase subunit 6 gene in brown hares (Lepus europaeus) under a phylogeographic perspective.
PLoS One. 2019;14:e0224902.
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KATO S, Hirai M, Ohkuma M, Suzuki K, et al
Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics.
PLoS One. 2019;14:e0224888.
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WANG X, Li D, Song S, Zhang Y, et al
Combined transcriptomics and proteomics forecast analysis for potential genes regulating the Columbian plumage color in chickens.
PLoS One. 2019;14:e0210850.
PubMed Abstract available

YANG J, Pak JH, Maki M, Kim SC, et al
Multiple origins and the population genetic structure of Rubus takesimensis (Rosaceae) on Ulleung Island: Implications for the genetic consequences of anagenetic speciation.
PLoS One. 2019;14:e0222707.
PubMed Abstract available

HEYDEL JM, Menetrier F, Belloir C, Canon F, et al
Characterization of rat glutathione transferases in olfactory epithelium and mucus.
PLoS One. 2019;14:e0220259.
PubMed Abstract available

VIJZELAAR R, Snetselaar R, Clausen M, Mason AG, et al
The frequency of SMN gene variants lacking exon 7 and 8 is highly population dependent.
PLoS One. 2019;14:e0220211.
PubMed Abstract available

MOODLEY V, Gubba A, Mafongoya PL
Prevalence, epidemiology and molecular studies of Tomato chlorosis virus (ToCV) in South Africa.
PLoS One. 2019;14:e0220298.
PubMed Abstract available

TAMAKI S, Nishino K, Ogawa T, Maruta T, et al
Comparative proteomic analysis of mitochondria isolated from Euglena gracilis under aerobic and hypoxic conditions.
PLoS One. 2019;14:e0227226.
PubMed Abstract available

RISPOLI LA, Edwards JL, Pohler KG, Russell S, et al
Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows.
PLoS One. 2019;14:e0227095.
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RUSMILI MRA, Othman I, Abidin SAZ, Yusof FA, et al
Variations in neurotoxicity and proteome profile of Malayan krait (Bungarus candidus) venoms.
PLoS One. 2019;14:e0227122.
PubMed Abstract available

BRUYNEEL AAN, Colas AR, Karakikes I, Mercola M, et al
AlleleProfileR: A versatile tool to identify and profile sequence variants in edited genomes.
PLoS One. 2019;14:e0226694.
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KUMARI R, Wankhede DP, Bajpai A, Maurya A, et al
Genome wide identification and characterization of microsatellite markers in black pepper (Piper nigrum): A valuable resource for boosting genomics applications.
PLoS One. 2019;14:e0226002.
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KHILYAS IV, Sorokina AV, Elistratova AA, Markelova MI, et al
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OSIMANI A, Milanovic V, Roncolini A, Riolo P, et al
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DIETL A, Winkel I, Pietrzyk G, Paulus M, et al
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TAMPUU A, Bzhalava Z, Dillner J, Vicente R, et al
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DUANGKUMPHA K, Stoll T, Phetcharaburanin J, Yongvanit P, et al
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PARK Y, Nam HY, Baek S, Lee SH, et al
Population genetic structure of Bemisia tabaci MED (Hemiptera: Aleyrodidae) in Korea.
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SPITZ N, Mello FCA, Moreira AS, Gusatti CS, et al
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