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Articles published in Proc Natl Acad Sci U S A

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    April 2021
  1. PALACIOS-FLORES K, Garcia-Sotelo J, Castillo A, Uribe C, et al
    Perfect Match Genomic Landscape strategy: Refinement and customization of reference genomes.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available

    March 2021
  2. NADEAU SA, Vaughan TG, Scire J, Huisman JS, et al
    The origin and early spread of SARS-CoV-2 in Europe.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available

    December 2020
  3. TAOUFIQ Z, Ninov M, Villar-Briones A, Wang HY, et al
    Hidden proteome of synaptic vesicles in the mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:33586-33596.
    PubMed     Abstract available

  4. RINCON-SANDOVAL M, Duarte-Ribeiro E, Davis AM, Santaquiteria A, et al
    Evolutionary determinism and convergence associated with water-column transitions in marine fishes.
    Proc Natl Acad Sci U S A. 2020;117:33396-33403.
    PubMed     Abstract available

  5. AZAR B
    Profile of Haig H. Kazazian Jr.
    Proc Natl Acad Sci U S A. 2020;117:32185-32188.

  6. CONCILLI M, Petruzzelli R, Parisi S, Catalano F, et al
    Pharmacoproteomics pinpoints HSP70 interaction for correction of the most frequent Wilson disease-causing mutant of ATP7B.
    Proc Natl Acad Sci U S A. 2020;117:32453-32463.
    PubMed     Abstract available

  7. LANDY JA, Oschmann A, Munch SB, Walsh MR, et al
    Ancestral genetic variation in phenotypic plasticity underlies rapid evolutionary changes in resurrected populations of waterfleas.
    Proc Natl Acad Sci U S A. 2020;117:32535-32544.
    PubMed     Abstract available

  8. LI K, Zhang S, Song X, Weyrich A, et al
    Genome evolution of blind subterranean mole rats: Adaptive peripatric versus sympatric speciation.
    Proc Natl Acad Sci U S A. 2020;117:32499-32508.
    PubMed     Abstract available

  9. BORDA V, Alvim I, Mendes M, Silva-Carvalho C, et al
    The genetic structure and adaptation of Andean highlanders and Amazonians are influenced by the interplay between geography and culture.
    Proc Natl Acad Sci U S A. 2020;117:32557-32565.
    PubMed     Abstract available

  10. HELMSTETTER AJ, Bethune K, Kamdem NG, Sonke B, et al
    Individualistic evolutionary responses of Central African rain forest plants to Pleistocene climatic fluctuations.
    Proc Natl Acad Sci U S A. 2020;117:32509-32518.
    PubMed     Abstract available

  11. MARTINSON VG, Gawryluk RMR, Gowen BE, Curtis CI, et al
    Multiple origins of obligate nematode and insect symbionts by a clade of bacteria closely related to plant pathogens.
    Proc Natl Acad Sci U S A. 2020;117:31979-31986.
    PubMed     Abstract available

    Profile of Se-Jin Lee.
    Proc Natl Acad Sci U S A. 2020;117:30870-30872.

  13. YANG HC, Chen CH, Wang JH, Liao HC, et al
    Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associations.
    Proc Natl Acad Sci U S A. 2020;117:30679-30686.
    PubMed     Abstract available

  14. AUNINS TR, Erickson KE, Chatterjee A
    Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli.
    Proc Natl Acad Sci U S A. 2020;117:30699-30709.
    PubMed     Abstract available

  15. BISCHOF R, Milleret C, Dupont P, Chipperfield J, et al
    Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring.
    Proc Natl Acad Sci U S A. 2020;117:30531-30538.
    PubMed     Abstract available

    November 2020
  16. ZHANG H, Zoued A, Liu X, Sit B, et al
    Type I interferon remodels lysosome function and modifies intestinal epithelial defense.
    Proc Natl Acad Sci U S A. 2020;117:29862-29871.
    PubMed     Abstract available

  17. CHEN D, Zhang Q, Tang W, Huang Z, et al
    The evolutionary origin and domestication history of goldfish (Carassius auratus).
    Proc Natl Acad Sci U S A. 2020;117:29775-29785.
    PubMed     Abstract available

  18. CLEVES PA, Tinoco AI, Bradford J, Perrin D, et al
    Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.
    Proc Natl Acad Sci U S A. 2020;117:28899-28905.
    PubMed     Abstract available

  19. VIEGAS J
    Profile of Masayori Inouye.
    Proc Natl Acad Sci U S A. 2020;117:28543-28545.

  20. LEE J, Ha S, Kim M, Kim SW, et al
    Spatial and temporal diversity of glycome expression in mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:28743-28753.
    PubMed     Abstract available

  21. KIM J, Rosenberg NA, Palacios JA
    Distance metrics for ranked evolutionary trees.
    Proc Natl Acad Sci U S A. 2020;117:28876-28886.
    PubMed     Abstract available

  22. EPSTEIN JH, Anthony SJ, Islam A, Kilpatrick AM, et al
    Nipah virus dynamics in bats and implications for spillover to humans.
    Proc Natl Acad Sci U S A. 2020;117:29190-29201.
    PubMed     Abstract available

  23. KOZLENKOV A, Vermunt MW, Apontes P, Li J, et al
    Evolution of regulatory signatures in primate cortical neurons at cell-type resolution.
    Proc Natl Acad Sci U S A. 2020;117:28422-28432.
    PubMed     Abstract available

  24. ROMERO IC, Kong S, Fowlkes CC, Jaramillo C, et al
    Improving the taxonomy of fossil pollen using convolutional neural networks and superresolution microscopy.
    Proc Natl Acad Sci U S A. 2020;117:28496-28505.
    PubMed     Abstract available

  25. STOCKLEY P, Franco C, Claydon AJ, Davidson A, et al
    Revealing mechanisms of mating plug function under sexual selection.
    Proc Natl Acad Sci U S A. 2020;117:27465-27473.
    PubMed     Abstract available

  26. CAO K, Ugarenko M, Ozark PA, Wang J, et al
    DOT1L-controlled cell-fate determination and transcription elongation are independent of H3K79 methylation.
    Proc Natl Acad Sci U S A. 2020;117:27365-27373.
    PubMed     Abstract available

  27. SHIBL AA, Isaac A, Ochsenkuhn MA, Cardenas A, et al
    Diatom modulation of select bacteria through use of two unique secondary metabolites.
    Proc Natl Acad Sci U S A. 2020;117:27445-27455.
    PubMed     Abstract available

  28. SHENG X, Qiu C, Liu H, Gluck C, et al
    Systematic integrated analysis of genetic and epigenetic variation in diabetic kidney disease.
    Proc Natl Acad Sci U S A. 2020 Nov 3. pii: 2005905117.
    PubMed     Abstract available

    October 2020
  29. OIKONOMOU P, Salatino R, Tavazoie S
    In vivo mRNA display enables large-scale proteomics by next generation sequencing.
    Proc Natl Acad Sci U S A. 2020;117:26710-26718.
    PubMed     Abstract available

    Toward causality and improving external validity.
    Proc Natl Acad Sci U S A. 2020;117:25963-25965.

  31. CARRILLO JD, Faurby S, Silvestro D, Zizka A, et al
    Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
    Proc Natl Acad Sci U S A. 2020;117:26281-26287.
    PubMed     Abstract available

  32. CHEN J, Lu L, Robb SMC, Collin M, et al
    Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.
    Proc Natl Acad Sci U S A. 2020;117:26288-26297.
    PubMed     Abstract available

  33. HAN J, Wang S, Yeung K, Yang D, et al
    Proteome-wide effects of naphthalene-derived secondary organic aerosol in BEAS-2B cells are caused by short-lived unsaturated carbonyls.
    Proc Natl Acad Sci U S A. 2020;117:25386-25395.
    PubMed     Abstract available

  34. HEINDEL DW, Koppolu S, Zhang Y, Kasper B, et al
    Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity.
    Proc Natl Acad Sci U S A. 2020 Oct 12. pii: 2008203117.
    PubMed     Abstract available

    Bitter gourd from Africa expanded to Southeast Asia and was domesticated there: A new insight from parallel studies.
    Proc Natl Acad Sci U S A. 2020;117:24630-24631.

  36. MATSUMURA H, Hsiao MC, Lin YP, Toyoda A, et al
    Reply to Renner: Meticulous investigation, not sequencing effort, leads to robust conclusion.
    Proc Natl Acad Sci U S A. 2020;117:24632-24633.

  37. ANDERSON KM, Collins MA, Kong R, Fang K, et al
    Convergent molecular, cellular, and cortical neuroimaging signatures of major depressive disorder.
    Proc Natl Acad Sci U S A. 2020;117:25138-25149.
    PubMed     Abstract available

  38. NGO D, Wen D, Gao Y, Keyes MJ, et al
    Circulating testican-2 is a podocyte-derived marker of kidney health.
    Proc Natl Acad Sci U S A. 2020;117:25026-25035.
    PubMed     Abstract available

  39. MCWILLIAM HEG, Mak JYW, Awad W, Zorkau M, et al
    Endoplasmic reticulum chaperones stabilize ligand-receptive MR1 molecules for efficient presentation of metabolite antigens.
    Proc Natl Acad Sci U S A. 2020;117:24974-24985.
    PubMed     Abstract available

  40. TUCHOLSKI T, Cai W, Gregorich ZR, Bayne EF, et al
    Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics.
    Proc Natl Acad Sci U S A. 2020;117:24691-24700.
    PubMed     Abstract available

    September 2020
  41. ARISTIZABAL MJ, Anreiter I, Halldorsdottir T, Odgers CL, et al
    Biological embedding of experience: A primer on epigenetics.
    Proc Natl Acad Sci U S A. 2020;117:23261-23269.
    PubMed     Abstract available

  42. MCEWEN LM, O'Donnell KJ, McGill MG, Edgar RD, et al
    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells.
    Proc Natl Acad Sci U S A. 2020;117:23329-23335.
    PubMed     Abstract available

  43. VAN DEN BROECK F, Savill NJ, Imamura H, Sanders M, et al
    Ecological divergence and hybridization of Neotropical Leishmania parasites.
    Proc Natl Acad Sci U S A. 2020 Sep 21. pii: 1920136117.
    PubMed     Abstract available

  44. HECKMANN D, Campeau A, Lloyd CJ, Phaneuf PV, et al
    Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.
    Proc Natl Acad Sci U S A. 2020;117:23182-23190.
    PubMed     Abstract available

  45. ALLEN RS, Gregg CM, Okada S, Menon A, et al
    Plant expression of NifD protein variants resistant to mitochondrial degradation.
    Proc Natl Acad Sci U S A. 2020;117:23165-23173.
    PubMed     Abstract available

  46. BJORKEROTH J, Campbell K, Malina C, Yu R, et al
    Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media.
    Proc Natl Acad Sci U S A. 2020;117:21804-21812.
    PubMed     Abstract available

  47. WAINBERG M, Magis AT, Earls JC, Lovejoy JC, et al
    Multiomic blood correlates of genetic risk identify presymptomatic disease alterations.
    Proc Natl Acad Sci U S A. 2020;117:21813-21820.
    PubMed     Abstract available

  48. CAI W, Huang J, Zhu Q, Li BE, et al
    Enhancer dependence of cell-type-specific gene expression increases with developmental age.
    Proc Natl Acad Sci U S A. 2020;117:21450-21458.
    PubMed     Abstract available

    August 2020
  49. BUFFALO V, Coop G
    Estimating the genome-wide contribution of selection to temporal allele frequency change.
    Proc Natl Acad Sci U S A. 2020;117:20672-20680.
    PubMed     Abstract available

  50. KWESI-MALIEPAARD EM, Aslam MA, Alemdehy MF, van den Brand T, et al
    The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8(+) T cells.
    Proc Natl Acad Sci U S A. 2020;117:20706-20716.
    PubMed     Abstract available

  51. WILLIAMS LM, McCann FE, Cabrita MA, Layton T, et al
    Identifying collagen VI as a target of fibrotic diseases regulated by CREBBP/EP300.
    Proc Natl Acad Sci U S A. 2020;117:20753-20763.
    PubMed     Abstract available

  52. WEBER JA, Park SG, Luria V, Jeon S, et al
    The whale shark genome reveals how genomic and physiological properties scale with body size.
    Proc Natl Acad Sci U S A. 2020;117:20662-20671.
    PubMed     Abstract available

  53. CARBALLAR-LEJARAZU R, Ogaugwu C, Tushar T, Kelsey A, et al
    Next-generation gene drive for population modification of the malaria vector mosquito, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2020 Aug 24. pii: 2010214117.
    PubMed     Abstract available

  54. LA CONO V, Messina E, Rohde M, Arcadi E, et al
    Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides.
    Proc Natl Acad Sci U S A. 2020;117:20223-20234.
    PubMed     Abstract available

  55. AMSTER G, Murphy DA, Milligan WR, Sella G, et al
    Changes in life history and population size can explain the relative neutral diversity levels on X and autosomes in extant human populations.
    Proc Natl Acad Sci U S A. 2020;117:20063-20069.
    PubMed     Abstract available

  56. ABU RAYYAN A, Kamal L, Casadei S, Brownstein Z, et al
    Genomic analysis of inherited hearing loss in the Palestinian population.
    Proc Natl Acad Sci U S A. 2020;117:20070-20076.
    PubMed     Abstract available

  57. PARK A, Oh S, Jung KL, Choi UY, et al
    Global epigenomic analysis of KSHV-infected primary effusion lymphoma identifies functional MYC superenhancers and enhancer RNAs.
    Proc Natl Acad Sci U S A. 2020 Aug 18. pii: 1922216117.
    PubMed     Abstract available

  58. ULHUQ FR, Gomes MC, Duggan GM, Guo M, et al
    A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition.
    Proc Natl Acad Sci U S A. 2020 Aug 7. pii: 2006110117.
    PubMed     Abstract available

    Honey bee colony aggression and indirect genetic effects.
    Proc Natl Acad Sci U S A. 2020;117:18148-18150.

    July 2020
  60. PARASKEVOPOULOU S, Pirzer F, Goldmann N, Schmid J, et al
    Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus.
    Proc Natl Acad Sci U S A. 2020;117:17977-17983.
    PubMed     Abstract available

  61. SANDOVAL-CASTILLO J, Gates K, Brauer CJ, Smith S, et al
    Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions.
    Proc Natl Acad Sci U S A. 2020;117:17112-17121.
    PubMed     Abstract available

  62. PEREDO EL, Cardon ZG
    Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae.
    Proc Natl Acad Sci U S A. 2020;117:17438-17445.
    PubMed     Abstract available

  63. HAWCO NJ, McIlvin MM, Bundy RM, Tagliabue A, et al
    Minimal cobalt metabolism in the marine cyanobacterium Prochlorococcus.
    Proc Natl Acad Sci U S A. 2020;117:15740-15747.
    PubMed     Abstract available

  64. HE C, Song W, Weston TA, Tran C, et al
    Peroxidasin-mediated bromine enrichment of basement membranes.
    Proc Natl Acad Sci U S A. 2020;117:15827-15836.
    PubMed     Abstract available

  65. LAY AC, Barrington AF, Hurcombe JA, Ramnath RD, et al
    A role for NPY-NPY2R signaling in albuminuric kidney disease.
    Proc Natl Acad Sci U S A. 2020;117:15862-15873.
    PubMed     Abstract available

    June 2020
    QnAs with Zachary B. Lippman.
    Proc Natl Acad Sci U S A. 2020;117:14624-14625.

  67. SU QP, Zhao ZW, Meng L, Ding M, et al
    Superresolution imaging reveals spatiotemporal propagation of human replication foci mediated by CTCF-organized chromatin structures.
    Proc Natl Acad Sci U S A. 2020;117:15036-15046.
    PubMed     Abstract available

  68. VENO MT, Reschke CR, Morris G, Connolly NMC, et al
    A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy.
    Proc Natl Acad Sci U S A. 2020 Jun 24. pii: 1919313117.
    PubMed     Abstract available

  69. ZHANG J, Peters RJ
    Why are momilactones always associated with biosynthetic gene clusters in plants?
    Proc Natl Acad Sci U S A. 2020;117:13867-13869.

    Profile of Christopher A. Walsh.
    Proc Natl Acad Sci U S A. 2020;117:13861-13863.

  71. BOULARD M, Rucli S, Edwards JR, Bestor TH, et al
    Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters.
    Proc Natl Acad Sci U S A. 2020;117:14292-14298.
    PubMed     Abstract available

  72. WU X, Cao B, Aquino P, Chiu TP, et al
    Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria.
    Proc Natl Acad Sci U S A. 2020;117:14322-14330.
    PubMed     Abstract available

  73. HEALTON SE, Pinto HD, Mishra LN, Hamilton GA, et al
    H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction.
    Proc Natl Acad Sci U S A. 2020;117:14251-14258.
    PubMed     Abstract available

  74. KRESS WJ, Mazet JAK, Hebert PDN
    Opinion: Intercepting pandemics through genomics.
    Proc Natl Acad Sci U S A. 2020;117:13852-13855.

  75. RAUSELL A, Luo Y, Lopez M, Seeleuthner Y, et al
    Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes.
    Proc Natl Acad Sci U S A. 2020;117:13626-13636.
    PubMed     Abstract available

  76. ROACH TNF, Little M, Arts MGI, Huckeba J, et al
    A multiomic analysis of in situ coral-turf algal interactions.
    Proc Natl Acad Sci U S A. 2020;117:13588-13595.
    PubMed     Abstract available

  77. MAHAMKALI V, Valgepea K, de Souza Pinto Lemgruber R, Plan M, et al
    Redox controls metabolic robustness in the gas-fermenting acetogen Clostridium autoethanogenum.
    Proc Natl Acad Sci U S A. 2020;117:13168-13175.
    PubMed     Abstract available

  78. DEGRANDMAISON J, Abdallah K, Blais V, Genier S, et al
    In vivo mapping of a GPCR interactome using knockin mice.
    Proc Natl Acad Sci U S A. 2020;117:13105-13116.
    PubMed     Abstract available

    May 2020
  79. BLATT M, Gusev A, Polyakov Y, Goldwasser S, et al
    Secure large-scale genome-wide association studies using homomorphic encryption.
    Proc Natl Acad Sci U S A. 2020;117:11608-11613.
    PubMed     Abstract available

  80. HUANG J, Khademi M, Fugger L, Lindhe O, et al
    Inflammation-related plasma and CSF biomarkers for multiple sclerosis.
    Proc Natl Acad Sci U S A. 2020 May 26. pii: 1912839117.
    PubMed     Abstract available

  81. PINEDA SS, Chin YK, Undheim EAB, Senff S, et al
    Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.
    Proc Natl Acad Sci U S A. 2020;117:11399-11408.
    PubMed     Abstract available

  82. RATHMANN H, Reyes-Centeno H
    Testing the utility of dental morphological trait combinations for inferring human neutral genetic variation.
    Proc Natl Acad Sci U S A. 2020;117:10769-10777.
    PubMed     Abstract available

  83. MOURKAS E, Taylor AJ, Meric G, Bayliss SC, et al
    Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni.
    Proc Natl Acad Sci U S A. 2020;117:11018-11028.
    PubMed     Abstract available

  84. DE MANUEL M, Barnett R, Sandoval-Velasco M, Yamaguchi N, et al
    The evolutionary history of extinct and living lions.
    Proc Natl Acad Sci U S A. 2020;117:10927-10934.
    PubMed     Abstract available

  85. CHAKRABORTY A, Ruff SE, Dong X, Ellefson ED, et al
    Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres.
    Proc Natl Acad Sci U S A. 2020;117:11029-11037.
    PubMed     Abstract available

  86. LONG JZ
    Proteomics illuminates fat as key tissue in aging.
    Proc Natl Acad Sci U S A. 2020;117:10111-10112.

  87. PETIT CS, Lee JJ, Boland S, Swarup S, et al
    Inhibition of sphingolipid synthesis improves outcomes and survival in GARP mutant wobbler mice, a model of motor neuron degeneration.
    Proc Natl Acad Sci U S A. 2020;117:10565-10574.
    PubMed     Abstract available

  88. LYNCH M
    The evolutionary scaling of cellular traits imposed by the drift barrier.
    Proc Natl Acad Sci U S A. 2020;117:10435-10444.
    PubMed     Abstract available

  89. DEBOUTTE W, Beller L, Yinda CK, Maes P, et al
    Honey-bee-associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential.
    Proc Natl Acad Sci U S A. 2020;117:10511-10519.
    PubMed     Abstract available

  90. DONIHUE CM, Kowaleski AM, Losos JB, Algar AC, et al
    Hurricane effects on Neotropical lizards span geographic and phylogenetic scales.
    Proc Natl Acad Sci U S A. 2020;117:10429-10434.
    PubMed     Abstract available

    Inner Workings: Molecular biologists offer "wartime service" in the effort to test for COVID-19.
    Proc Natl Acad Sci U S A. 2020;117:9656-9659.

  92. CRANE PR, Friis EM
    Water lilies, loss of woodiness, and model systems.
    Proc Natl Acad Sci U S A. 2020;117:9674-9676.

  93. YU Q, Xiao H, Jedrychowski MP, Schweppe DK, et al
    Sample multiplexing for targeted pathway proteomics in aging mice.
    Proc Natl Acad Sci U S A. 2020;117:9723-9732.
    PubMed     Abstract available

  94. PARDO J, Man Wai C, Chay H, Madden CF, et al
    Intertwined signatures of desiccation and drought tolerance in grasses.
    Proc Natl Acad Sci U S A. 2020;117:10079-10088.
    PubMed     Abstract available

  95. CAMMACK AJ, Moudgil A, Chen J, Vasek MJ, et al
    A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues.
    Proc Natl Acad Sci U S A. 2020;117:10003-10014.
    PubMed     Abstract available

    April 2020
  96. FLYNN JM, Hubley R, Goubert C, Rosen J, et al
    RepeatModeler2 for automated genomic discovery of transposable element families.
    Proc Natl Acad Sci U S A. 2020;117:9451-9457.
    PubMed     Abstract available

  97. LEE S, Hu Y, Loo SK, Tan Y, et al
    Landscape analysis of adjacent gene rearrangements reveals BCL2L14-ETV6 gene fusions in more aggressive triple-negative breast cancer.
    Proc Natl Acad Sci U S A. 2020 Apr 22. pii: 1921333117.
    PubMed     Abstract available

  98. CHERRY TJ, Yang MG, Harmin DA, Tao P, et al
    Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease.
    Proc Natl Acad Sci U S A. 2020;117:9001-9012.
    PubMed     Abstract available

  99. OBERHOFER G, Ivy T, Hay BA
    Gene drive and resilience through renewal with next generation Cleave and Rescue selfish genetic elements.
    Proc Natl Acad Sci U S A. 2020;117:9013-9021.
    PubMed     Abstract available

  100. CAMPBELL K, Westholm J, Kasvandik S, Di Bartolomeo F, et al
    Building blocks are synthesized on demand during the yeast cell cycle.
    Proc Natl Acad Sci U S A. 2020;117:7575-7583.
    PubMed     Abstract available

  101. LEUNG KK, Wilson GM, Kirkemo LL, Riley NM, et al
    Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes.
    Proc Natl Acad Sci U S A. 2020;117:7764-7775.
    PubMed     Abstract available

  102. DAVIS TH
    QnAs with Jens Nielsen.
    Proc Natl Acad Sci U S A. 2020;117:7548-7549.

  103. YE M, Goudot C, Hoyler T, Lemoine B, et al
    Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers.
    Proc Natl Acad Sci U S A. 2020;117:7905-7916.
    PubMed     Abstract available

  104. YADAV V, Sun S, Coelho MA, Heitman J, et al
    Centromere scission drives chromosome shuffling and reproductive isolation.
    Proc Natl Acad Sci U S A. 2020;117:7917-7928.
    PubMed     Abstract available

    March 2020
  105. OYAS O, Borrell S, Trauner A, Zimmermann M, et al
    Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis.
    Proc Natl Acad Sci U S A. 2020 Mar 30. pii: 1915551117.
    PubMed     Abstract available

  106. ALLEN JP, Ozer EA, Minasov G, Shuvalova L, et al
    A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant.
    Proc Natl Acad Sci U S A. 2020;117:6811-6821.
    PubMed     Abstract available

  107. SLODKOWICZ G, Goldman N
    Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals.
    Proc Natl Acad Sci U S A. 2020;117:5977-5986.
    PubMed     Abstract available

  108. SEIF Y, Choudhary KS, Hefner Y, Anand A, et al
    Metabolic and genetic basis for auxotrophies in Gram-negative species.
    Proc Natl Acad Sci U S A. 2020;117:6264-6273.
    PubMed     Abstract available

  109. LIN Y, Wozniak JM, Grimsey NJ, Girada S, et al
    Phosphoproteomic analysis of protease-activated receptor-1 biased signaling reveals unique modulators of endothelial barrier function.
    Proc Natl Acad Sci U S A. 2020;117:5039-5048.
    PubMed     Abstract available

  110. HARRISON S, Spasojevic MJ, Li D
    Climate and plant community diversity in space and time.
    Proc Natl Acad Sci U S A. 2020;117:4464-4470.
    PubMed     Abstract available

  111. ZHANG Y, Wendte JM, Ji L, Schmitz RJ, et al
    Natural variation in DNA methylation homeostasis and the emergence of epialleles.
    Proc Natl Acad Sci U S A. 2020;117:4874-4884.
    PubMed     Abstract available

  112. ZHANG X, Hong D, Ma S, Ward T, et al
    Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage.
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  113. KESAVAN R, Fromel T, Zukunft S, Laban H, et al
    Cyp2c44 regulates prostaglandin synthesis, lymphangiogenesis, and metastasis in a mouse model of breast cancer.
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  114. YANG Q, Zhao X, Lemey P, Suchard MA, et al
    Assessing the role of live poultry trade in community-structured transmission of avian influenza in China.
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    Genomics of sorghum local adaptation to a parasitic plant.
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    Impact of past climate warming on genomic diversity and demographic history of collared lemmings across the Eurasian Arctic.
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    Genome-scale transcriptional dynamics and environmental biosensing.
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    Inner Workings: A microscopic mystery at the heart of mass-coral bleaching.
    Proc Natl Acad Sci U S A. 2020;117:2232-2235.

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    Genomic insight into the origins and dispersal of the Brazilian coastal natives.
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  120. KESSLER MD, Loesch DP, Perry JA, Heard-Costa NL, et al
    De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population.
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    Finding the tail end: The discovery of RNA splicing.
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    Cystic fibrosis carriers are at increased risk for a wide range of cystic fibrosis-related conditions.
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    Geographically divergent evolutionary and ecological legacies shape mammal biodiversity in the global tropics and subtropics.
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    Functional testing of ASD-associated genes.
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    Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination.
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    Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.
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    DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products.
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    Functional genetic validation of key genes conferring insecticide resistance in the major African malaria vector, Anopheles gambiae.
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    Early epigenomic and transcriptional changes reveal Elk-1 transcription factor as a therapeutic target in Huntington's disease.
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    Phylogenetic dispersion and diversity in regional assemblages of seed plants in China.
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    Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa.
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    Genetic contributions to variation in human stature in prehistoric Europe.
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    Ultrasensitive, multiplexed chemoproteomic profiling with soluble activity-dependent proximity ligation.
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    A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales.
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    The beginning of an era of functional genomics in Rickettsiology is steeped in history.
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    A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.
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    Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster.
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  138. RYAN SF, Lombaert E, Espeset A, Vila R, et al
    Global invasion history of the agricultural pest butterfly Pieris rapae revealed with genomics and citizen science.
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    September 2019
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    Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine.
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    GeneFishing to reconstruct context specific portraits of biological processes.
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  141. KUMAR S, Clarke D, Gerstein MB
    Leveraging protein dynamics to identify cancer mutational hotspots using 3D structures.
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    Selection on VPS13A linked to migration in a songbird.
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  143. TIAN C, Clauser KR, Ohlund D, Rickelt S, et al
    Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells.
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    Reply to Ruprecht and Mayer: Unearthing genomic fossils in the pathogenesis of multiple sclerosis.
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  150. SOTOUDEH R, Harris KM, Conley D
    Effects of the peer metagenomic environment on smoking behavior.
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    Genomics reveals alga-associated cyanobacteria hiding in plain sight.
    Proc Natl Acad Sci U S A. 2019;116:15757-15759.

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    Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host.
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    Universal amplification-free molecular diagnostics by billion-fold hierarchical nanofluidic concentration.
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    Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.
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    Deep evolutionary origin of limb and fin regeneration.
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    Unexpected host dependency of Antarctic Nanohaloarchaeota.
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    Polar bear evolution is marked by rapid changes in gene copy number in response to dietary shift.
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    Historical and genomic data reveal the influencing factors on global transmission velocity of plague during the Third Pandemic.
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    Activation of unliganded FGF receptor by extracellular phosphate potentiates proteolytic protection of FGF23 by its O-glycosylation.
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    Predicting clinical outcome of therapy-resistant prostate cancer.
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    Inner Workings: Genomics blazes a trail to improved cannabis cultivation.
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    Cancer stemness, intratumoral heterogeneity, and immune response across cancers.
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    A diecast mineralization process forms the tough mantis shrimp dactyl club.
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    Prediction and identification of recurrent genomic rearrangements that generate chimeric chromosomes in Saccharomyces cerevisiae.
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    Genomic evidence of survival near ice sheet margins for some, but not all, North American trees.
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    MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis.
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    Chemical synthesis rewriting of a bacterial genome to achieve design flexibility and biological functionality.
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    Predictability of human differential gene expression.
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    Cleave and Rescue, a novel selfish genetic element and general strategy for gene drive.
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    Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space.
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    Risk variants disrupting enhancers of TH1 and TREG cells in type 1 diabetes.
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    Cellular senescence in progenitor cells contributes to diminished remyelination potential in progressive multiple sclerosis.
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    Genomic and molecular characterization of preterm birth.
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    The genetic architecture of teosinte catalyzed and constrained maize domestication.
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    Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis.
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    Early onset preeclampsia in a model for human placental trophoblast.
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    Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes.
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    Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook-Like10 phosphorylation required for stress growth regulation.
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    Chromatin features constrain structural variation across evolutionary timescales.
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    Multiomics resolution of molecular events during a day in the life of Chlamydomonas.
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    More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells.
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    Allele frequency dynamics in a pedigreed natural population.
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    The methyltransferase SETD6 regulates Mitotic progression through PLK1 methylation.
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    Signatures of selection in the human antibody repertoire: Selective sweeps, competing subclones, and neutral drift.
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    Multiomics of azacitidine-treated AML cells reveals variable and convergent targets that remodel the cell-surface proteome.
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  221. SONG H, Ou W, Feng Y, Zhang J, et al
    Disparate impact on CD4 T cell count by two distinct HIV-1 phylogenetic clusters from the same clade.
    Proc Natl Acad Sci U S A. 2018 Dec 17. pii: 1814714116.
    PubMed     Abstract available

  222. HAMDAN FH, Johnsen SA
    DeltaNp63-dependent super enhancers define molecular identity in pancreatic cancer by an interconnected transcription factor network.
    Proc Natl Acad Sci U S A. 2018 Dec 12. pii: 1812915116.
    PubMed     Abstract available

  223. MILLER NT, Burnap RL
    Navigating the fitness landscape using multiallele genome editing.
    Proc Natl Acad Sci U S A. 2018;115:12547-12549.

  224. UNGERER J, Wendt KE, Hendry JI, Maranas CD, et al
    Comparative genomics reveals the molecular determinants of rapid growth of the cyanobacterium Synechococcus elongatus UTEX 2973.
    Proc Natl Acad Sci U S A. 2018;115:E11761-E11770.
    PubMed     Abstract available

    November 2018
  225. MATSUNUMA R, Chan DW, Kim BJ, Singh P, et al
    DPYSL3 modulates mitosis, migration, and epithelial-to-mesenchymal transition in claudin-low breast cancer.
    Proc Natl Acad Sci U S A. 2018 Nov 29. pii: 1810598115.
    PubMed     Abstract available

  226. BERGEY CM, Lopez M, Harrison GF, Patin E, et al
    Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers.
    Proc Natl Acad Sci U S A. 2018;115:E11256-E11263.
    PubMed     Abstract available

  227. LOELL K, Nanda V
    Marginal protein stability drives subcellular proteome isoelectric point.
    Proc Natl Acad Sci U S A. 2018;115:11778-11783.
    PubMed     Abstract available

  228. KERSTEN RD, Weng JK
    Gene-guided discovery and engineering of branched cyclic peptides in plants.
    Proc Natl Acad Sci U S A. 2018;115:E10961-E10969.
    PubMed     Abstract available

  229. LIN YC, Wang J, Delhomme N, Schiffthaler B, et al
    Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen.
    Proc Natl Acad Sci U S A. 2018;115:E10970-E10978.
    PubMed     Abstract available

  230. BAUSCH-FLUCK D, Goldmann U, Muller S, van Oostrum M, et al
    The in silico human surfaceome.
    Proc Natl Acad Sci U S A. 2018;115:E10988-E10997.
    PubMed     Abstract available

    October 2018
  231. COSTA DL, Yetter N, DeSomer H
    Intergenerational transmission of paternal trauma among US Civil War ex-POWs.
    Proc Natl Acad Sci U S A. 2018;115:11215-11220.
    PubMed     Abstract available

  232. MARIE R, Pedersen JN, Baerlocher L, Koprowska K, et al
    Single-molecule DNA-mapping and whole-genome sequencing of individual cells.
    Proc Natl Acad Sci U S A. 2018;115:11192-11197.
    PubMed     Abstract available

  233. PAERL RW, Sundh J, Tan D, Svenningsen SL, et al
    Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability.
    Proc Natl Acad Sci U S A. 2018;115:E10447-E10456.
    PubMed     Abstract available

  234. KOKOTOS AC, Peltier J, Davenport EC, Trost M, et al
    Activity-dependent bulk endocytosis proteome reveals a key presynaptic role for the monomeric GTPase Rab11.
    Proc Natl Acad Sci U S A. 2018;115:E10177-E10186.
    PubMed     Abstract available

  235. RIVAS-CARRILLO SD, Pettersson ME, Rubin CJ, Jern P, et al
    Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations.
    Proc Natl Acad Sci U S A. 2018;115:11012-11017.
    PubMed     Abstract available

  236. WANG K, Yang Z, Qing D, Ren F, et al
    Quantitative and functional posttranslational modification proteomics reveals that TREPH1 plays a role in plant touch-delayed bolting.
    Proc Natl Acad Sci U S A. 2018;115:E10265-E10274.
    PubMed     Abstract available

  237. PUENTE-SANCHEZ F, Arce-Rodriguez A, Oggerin M, Garcia-Villadangos M, et al
    Viable cyanobacteria in the deep continental subsurface.
    Proc Natl Acad Sci U S A. 2018;115:10702-10707.
    PubMed     Abstract available

  238. ROHRBACK S, April C, Kaper F, Rivera RR, et al
    Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing.
    Proc Natl Acad Sci U S A. 2018;115:10804-10809.
    PubMed     Abstract available

  239. DOW M, Pyke RM, Tsui BY, Alexandrov LB, et al
    Integrative genomic analysis of mouse and human hepatocellular carcinoma.
    Proc Natl Acad Sci U S A. 2018;115:E9879-E9888.
    PubMed     Abstract available

  240. GUELLIL M, Kersten O, Namouchi A, Bauer EL, et al
    Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia.
    Proc Natl Acad Sci U S A. 2018;115:10422-10427.
    PubMed     Abstract available

  241. WANG X, Pipes L, Trut LN, Herbeck Y, et al
    Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes).
    Proc Natl Acad Sci U S A. 2018;115:10398-10403.
    PubMed     Abstract available

    September 2018
  242. YARRINGTON RM, Verma S, Schwartz S, Trautman JK, et al
    Nucleosomes inhibit target cleavage by CRISPR-Cas9 in vivo.
    Proc Natl Acad Sci U S A. 2018;115:9351-9358.
    PubMed     Abstract available

  243. CHU B, He A, Tian Y, He W, et al
    Photoaffinity-engineered protein scaffold for systematically exploring native phosphotyrosine signaling complexes in tumor samples.
    Proc Natl Acad Sci U S A. 2018;115:E8863-E8872.
    PubMed     Abstract available

  244. GASSAWAY BM, Petersen MC, Surovtseva YV, Barber KW, et al
    PKCepsilon contributes to lipid-induced insulin resistance through cross talk with p70S6K and through previously unknown regulators of insulin signaling.
    Proc Natl Acad Sci U S A. 2018;115:E8996-E9005.
    PubMed     Abstract available

  245. TEREKHOV SS, Smirnov IV, Malakhova MV, Samoilov AE, et al
    Ultrahigh-throughput functional profiling of microbiota communities.
    Proc Natl Acad Sci U S A. 2018;115:9551-9556.
    PubMed     Abstract available

    August 2018
  246. GEORGE RJ, Plog S, Watson AS, Schmidt KL, et al
    Archaeogenomic evidence from the southwestern US points to a pre-Hispanic scarlet macaw breeding colony.
    Proc Natl Acad Sci U S A. 2018;115:8740-8745.
    PubMed     Abstract available

  247. PATAKI CI, Rodrigues J, Zhang L, Qian J, et al
    Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial alpha-helical membrane anchors.
    Proc Natl Acad Sci U S A. 2018;115:E8172-E8180.
    PubMed     Abstract available

  248. SHIN JW
    Squeezing cells through the epigenetic machinery.
    Proc Natl Acad Sci U S A. 2018;115:8472-8474.

  249. SEVERO MS, Landry JJM, Lindquist RL, Goosmann C, et al
    Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging.
    Proc Natl Acad Sci U S A. 2018;115:E7568-E7577.
    PubMed     Abstract available

    July 2018
  250. HAZZI NA, Moreno JS, Ortiz-Movliav C, Palacio RD, et al
    Biogeographic regions and events of isolation and diversification of the endemic biota of the tropical Andes.
    Proc Natl Acad Sci U S A. 2018;115:7985-7990.
    PubMed     Abstract available

    June 2018
  251. SCAIEWICZ A, Levitt M
    Unique function words characterize genomic proteins.
    Proc Natl Acad Sci U S A. 2018;115:6703-6708.
    PubMed     Abstract available

  252. FREGEL R, Mendez FL, Bokbot Y, Martin-Socas D, et al
    Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe.
    Proc Natl Acad Sci U S A. 2018;115:6774-6779.
    PubMed     Abstract available

    Pharmacogenomics of antioxidant supplementation to prevent age-related macular degeneration.
    Proc Natl Acad Sci U S A. 2018;115:E5639.

  254. VAVVAS DG, Small KW, Awh C, Zanke BW, et al
    Reply to Vickers: Pharmacogenetics and progression to neovascular age-related macular degeneration-Evidence supporting practice change.
    Proc Natl Acad Sci U S A. 2018;115:E5640-E5641.

  255. NYERGES A, Csorgo B, Draskovits G, Kintses B, et al
    Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance.
    Proc Natl Acad Sci U S A. 2018;115:E5726-E5735.
    PubMed     Abstract available

  256. KLEINER M, Dong X, Hinzke T, Wippler J, et al
    Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities.
    Proc Natl Acad Sci U S A. 2018;115:E5576-E5584.
    PubMed     Abstract available

  257. GYORFFY BA, Kun J, Torok G, Bulyaki E, et al
    Local apoptotic-like mechanisms underlie complement-mediated synaptic pruning.
    Proc Natl Acad Sci U S A. 2018;115:6303-6308.
    PubMed     Abstract available

  258. HUGHES LC, Orti G, Huang Y, Sun Y, et al
    Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data.
    Proc Natl Acad Sci U S A. 2018;115:6249-6254.
    PubMed     Abstract available

    QnAs with Joanne Chory.
    Proc Natl Acad Sci U S A. 2018;115:6102-6103.

  260. DAI J, Liang K, Zhao S, Jia W, et al
    Chemoproteomics reveals baicalin activates hepatic CPT1 to ameliorate diet-induced obesity and hepatic steatosis.
    Proc Natl Acad Sci U S A. 2018 Jun 11. pii: 1801745115.
    PubMed     Abstract available

  261. NAIR P
    QnAs with Caroline Dean.
    Proc Natl Acad Sci U S A. 2018;115:5824-5826.

  262. RADI R
    Oxygen radicals, nitric oxide, and peroxynitrite: Redox pathways in molecular medicine.
    Proc Natl Acad Sci U S A. 2018;115:5839-5848.
    PubMed     Abstract available

  263. TOLEMAN CA, Schumacher MA, Yu SH, Zeng W, et al
    Structural basis of O-GlcNAc recognition by mammalian 14-3-3 proteins.
    Proc Natl Acad Sci U S A. 2018;115:5956-5961.
    PubMed     Abstract available

  264. PARK J, Lim CJ, Shen M, Park HJ, et al
    Epigenetic switch from repressive to permissive chromatin in response to cold stress.
    Proc Natl Acad Sci U S A. 2018;115:E5400-E5409.
    PubMed     Abstract available

  265. SRIVASTAVA G, Mehrotra RC, Dilcher DL
    Paleocene Ipomoea (Convolvulaceae) from India with implications for an East Gondwana origin of Convolvulaceae.
    Proc Natl Acad Sci U S A. 2018;115:6028-6033.
    PubMed     Abstract available

  266. PORTER LL, Looger LL
    Extant fold-switching proteins are widespread.
    Proc Natl Acad Sci U S A. 2018;115:5968-5973.
    PubMed     Abstract available

  267. ANTONELLI A, Zizka A, Carvalho FA, Scharn R, et al
    Amazonia is the primary source of Neotropical biodiversity.
    Proc Natl Acad Sci U S A. 2018;115:6034-6039.
    PubMed     Abstract available

    May 2018
  268. WANG GD, Zhang BL, Zhou WW, Li YX, et al
    Selection and environmental adaptation along a path to speciation in the Tibetan frog Nanorana parkeri.
    Proc Natl Acad Sci U S A. 2018;115:E5056-E5065.
    PubMed     Abstract available

  269. SHEN X, Shen S, Li J, Hu Q, et al
    IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts.
    Proc Natl Acad Sci U S A. 2018;115:E4767-E4776.
    PubMed     Abstract available

  270. ZHAO J, Lupino K, Wilkins BJ, Qiu C, et al
    Genomic integration of ERRgamma-HNF1beta regulates renal bioenergetics and prevents chronic kidney disease.
    Proc Natl Acad Sci U S A. 2018;115:E4910-E4919.
    PubMed     Abstract available

  271. CHAMPER J, Liu J, Oh SY, Reeves R, et al
    Reducing resistance allele formation in CRISPR gene drive.
    Proc Natl Acad Sci U S A. 2018;115:5522-5527.
    PubMed     Abstract available

  272. VAN VELZEN R, Holmer R, Bu F, Rutten L, et al
    Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses.
    Proc Natl Acad Sci U S A. 2018;115:E4700-E4709.
    PubMed     Abstract available

  273. WANG J, Schultz PG, Johnson KA
    Mechanistic studies of a small-molecule modulator of SMN2 splicing.
    Proc Natl Acad Sci U S A. 2018;115:E4604-E4612.
    PubMed     Abstract available

  274. WANG X, Chen ZH, Yang C, Zhang X, et al
    Genomic adaptation to drought in wild barley is driven by edaphic natural selection at the Tabigha Evolution Slope.
    Proc Natl Acad Sci U S A. 2018;115:5223-5228.
    PubMed     Abstract available

  275. CLEVES PA, Strader ME, Bay LK, Pringle JR, et al
    CRISPR/Cas9-mediated genome editing in a reef-building coral.
    Proc Natl Acad Sci U S A. 2018;115:5235-5240.
    PubMed     Abstract available

  276. DOCTROW B
    QnAs with Howard Y. Chang.
    Proc Natl Acad Sci U S A. 2018;115:4805-4806.

  277. AHMED F
    QnAs with Donald Geman.
    Proc Natl Acad Sci U S A. 2018;115:4528-4529.

  278. DINALANKARA W, Ke Q, Xu Y, Ji L, et al
    Digitizing omics profiles by divergence from a baseline.
    Proc Natl Acad Sci U S A. 2018;115:4545-4552.
    PubMed     Abstract available

    April 2018
  279. HEO S, Diering GH, Na CH, Nirujogi RS, et al
    Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover.
    Proc Natl Acad Sci U S A. 2018;115:E3827-E3836.
    PubMed     Abstract available

  280. PONCE DE LEON MS, Koesbardiati T, Weissmann JD, Milella M, et al
    Human bony labyrinth is an indicator of population history and dispersal from Africa.
    Proc Natl Acad Sci U S A. 2018;115:4128-4133.
    PubMed     Abstract available

  281. NTAI I, Fornelli L, DeHart CJ, Hutton JE, et al
    Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk.
    Proc Natl Acad Sci U S A. 2018;115:4140-4145.
    PubMed     Abstract available

  282. DOOLITTLE WF, Inkpen SA
    Processes and patterns of interaction as units of selection: An introduction to ITSNTS thinking.
    Proc Natl Acad Sci U S A. 2018;115:4006-4014.
    PubMed     Abstract available

  283. BIRZU G, Hallatschek O, Korolev KS
    Fluctuations uncover a distinct class of traveling waves.
    Proc Natl Acad Sci U S A. 2018;115:E3645-E3654.
    PubMed     Abstract available

  284. MOLLER S, du Plessis L, Stadler T
    Impact of the tree prior on estimating clock rates during epidemic outbreaks.
    Proc Natl Acad Sci U S A. 2018;115:4200-4205.
    PubMed     Abstract available

  285. GRUBER A, Hornburg D, Antonin M, Krahmer N, et al
    Molecular and structural architecture of polyQ aggregates in yeast.
    Proc Natl Acad Sci U S A. 2018;115:E3446-E3453.
    PubMed     Abstract available

  286. IMAMURA K, Yoshitane H, Hattori K, Yamaguchi M, et al
    ASK family kinases mediate cellular stress and redox signaling to circadian clock.
    Proc Natl Acad Sci U S A. 2018;115:3646-3651.
    PubMed     Abstract available

  287. CHAVEZ A, Pruitt BW, Tuttle M, Shapiro RS, et al
    Precise Cas9 targeting enables genomic mutation prevention.
    Proc Natl Acad Sci U S A. 2018;115:3669-3673.
    PubMed     Abstract available

  288. OROZCO CA, Martinez-Bosch N, Guerrero PE, Vinaixa J, et al
    Targeting galectin-1 inhibits pancreatic cancer progression by modulating tumor-stroma crosstalk.
    Proc Natl Acad Sci U S A. 2018 Apr 3. pii: 1722434115.
    PubMed     Abstract available

    March 2018
  289. MOBADERSANY P, Yousefi S, Amgad M, Gutman DA, et al
    Predicting cancer outcomes from histology and genomics using convolutional networks.
    Proc Natl Acad Sci U S A. 2018;115:E2970-E2979.
    PubMed     Abstract available

  290. TONG T, Chen S, Wang L, Tang Y, et al
    Occurrence, evolution, and functions of DNA phosphorothioate epigenetics in bacteria.
    Proc Natl Acad Sci U S A. 2018;115:E2988-E2996.
    PubMed     Abstract available

  291. DISSELHORST JA, Krueger MA, Ud-Dean SMM, Bezrukov I, et al
    Linking imaging to omics utilizing image-guided tissue extraction.
    Proc Natl Acad Sci U S A. 2018;115:E2980-E2987.
    PubMed     Abstract available

  292. VAN GINKEL J, Filius M, Szczepaniak M, Tulinski P, et al
    Single-molecule peptide fingerprinting.
    Proc Natl Acad Sci U S A. 2018;115:3338-3343.
    PubMed     Abstract available

  293. VALDIOSERA C, Gunther T, Vera-Rodriguez JC, Urena I, et al
    Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia.
    Proc Natl Acad Sci U S A. 2018;115:3428-3433.
    PubMed     Abstract available

  294. VEERAMAH KR, Rott A, Gross M, van Dorp L, et al
    Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria.
    Proc Natl Acad Sci U S A. 2018;115:3494-3499.
    PubMed     Abstract available

  295. ARREGUI S, Iglesias MJ, Samper S, Marinova D, et al
    Data-driven model for the assessment of Mycobacterium tuberculosis transmission in evolving demographic structures.
    Proc Natl Acad Sci U S A. 2018 Mar 21. pii: 1720606115.
    PubMed     Abstract available

  296. WOO M
    Inner Workings: Better sequencing tech may help keep planets clean.
    Proc Natl Acad Sci U S A. 2018;115:2542-2544.

  297. PALKOPOULOU E, Lipson M, Mallick S, Nielsen S, et al
    A comprehensive genomic history of extinct and living elephants.
    Proc Natl Acad Sci U S A. 2018;115:E2566-E2574.
    PubMed     Abstract available

  298. XIAO Q, Ludwig AK, Romano C, Buzzacchera I, et al
    Exploring functional pairing between surface glycoconjugates and human galectins using programmable glycodendrimersomes.
    Proc Natl Acad Sci U S A. 2018;115:E2509-E2518.
    PubMed     Abstract available

  299. POLLOCK SB, Hu A, Mou Y, Martinko AJ, et al
    Highly multiplexed and quantitative cell-surface protein profiling using genetically barcoded antibodies.
    Proc Natl Acad Sci U S A. 2018;115:2836-2841.
    PubMed     Abstract available

  300. FORESTER CM, Zhao Q, Phillips NJ, Urisman A, et al
    Revealing nascent proteomics in signaling pathways and cell differentiation.
    Proc Natl Acad Sci U S A. 2018;115:2353-2358.
    PubMed     Abstract available

  301. SCHROEDER H, Sikora M, Gopalakrishnan S, Cassidy LM, et al
    Origins and genetic legacies of the Caribbean Taino.
    Proc Natl Acad Sci U S A. 2018;115:2341-2346.
    PubMed     Abstract available

  302. BELIVEAU BJ, Kishi JY, Nir G, Sasaki HM, et al
    OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.
    Proc Natl Acad Sci U S A. 2018;115:E2183-E2192.
    PubMed     Abstract available

  303. RYAN SF, Deines JM, Scriber JM, Pfrender ME, et al
    Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling.
    Proc Natl Acad Sci U S A. 2018;115:E2284-E2291.
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    February 2018
  304. KARDOS M, Nietlisbach P, Hedrick PW
    How should we compare different genomic estimates of the strength of inbreeding depression?
    Proc Natl Acad Sci U S A. 2018 Feb 21. pii: 1714475115.

  305. MORI T, Cahn JKB, Wilson MC, Meoded RA, et al
    Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.
    Proc Natl Acad Sci U S A. 2018;115:1718-1723.
    PubMed     Abstract available

  306. PHILLIPS KP, Cable J, Mohammed RS, Herdegen-Radwan M, et al
    Immunogenetic novelty confers a selective advantage in host-pathogen coevolution.
    Proc Natl Acad Sci U S A. 2018;115:1552-1557.
    PubMed     Abstract available

  307. DUCATI RG, Namanja-Magliano HA, Harijan RK, Fajardo JE, et al
    Genetic resistance to purine nucleoside phosphorylase inhibition in Plasmodium falciparum.
    Proc Natl Acad Sci U S A. 2018 Feb 12. pii: 1525670115.
    PubMed     Abstract available

  308. RAM Y, Liberman U, Feldman MW
    Evolution of vertical and oblique transmission under fluctuating selection.
    Proc Natl Acad Sci U S A. 2018;115:E1174-E1183.
    PubMed     Abstract available

    January 2018
  309. PALIOU C, Andrey G
    Large genomic insertion at the Shh locus results in hammer toes through enhancer adoption.
    Proc Natl Acad Sci U S A. 2018;115:839-841.

  310. BRADSHAW WE, Burkhart J, Colbourne JK, Borowczak R, et al
    Evolutionary transition from blood feeding to obligate nonbiting in a mosquito.
    Proc Natl Acad Sci U S A. 2018;115:1009-1014.
    PubMed     Abstract available

  311. LAENCINA L, Dubois V, Le Moigne V, Viljoen A, et al
    Identification of genes required for Mycobacterium abscessus growth in vivo with a prominent role of the ESX-4 locus.
    Proc Natl Acad Sci U S A. 2018;115:E1002-E1011.
    PubMed     Abstract available

  312. ZHANG Y, Harris CJ, Liu Q, Liu W, et al
    Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis.
    Proc Natl Acad Sci U S A. 2018;115:E1069-E1074.
    PubMed     Abstract available

  313. JALILI R, Horecka J, Swartz JR, Davis RW, et al
    Streamlined circular proximity ligation assay provides high stringency and compatibility with low-affinity antibodies.
    Proc Natl Acad Sci U S A. 2018;115:E925-E933.
    PubMed     Abstract available

  314. JENNESS C, Giunta S, Muller MM, Kimura H, et al
    HELLS and CDCA7 comprise a bipartite nucleosome remodeling complex defective in ICF syndrome.
    Proc Natl Acad Sci U S A. 2018;115:E876-E885.
    PubMed     Abstract available

    Profile of Scott W. Lowe.
    Proc Natl Acad Sci U S A. 2018;115:630-632.

  316. EDIE SM, Jablonski D, Valentine JW
    Contrasting responses of functional diversity to major losses in taxonomic diversity.
    Proc Natl Acad Sci U S A. 2018;115:732-737.
    PubMed     Abstract available

  317. DUNN CW, Zapata F, Munro C, Siebert S, et al
    Pairwise comparisons across species are problematic when analyzing functional genomic data.
    Proc Natl Acad Sci U S A. 2018;115:E409-E417.
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  318. BERGAUER K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, et al
    Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics.
    Proc Natl Acad Sci U S A. 2018;115:E400-E408.
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  319. MENACHERY VD, Schafer A, Burnum-Johnson KE, Mitchell HD, et al
    MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape.
    Proc Natl Acad Sci U S A. 2018 Jan 16. pii: 1706928115.
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  320. VASYLYEVA TI, Liulchuk M, Friedman SR, Sazonova I, et al
    Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.
    Proc Natl Acad Sci U S A. 2018 Jan 16. pii: 1701447115.
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  321. FIGUEROA IA, Barnum TP, Somasekhar PY, Carlstrom CI, et al
    Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway.
    Proc Natl Acad Sci U S A. 2018;115:E92-E101.
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    December 2017
  322. CHEN B, Jiang L, Zhong ML, Li JF, et al
    Identification of fusion genes and characterization of transcriptome features in T-cell acute lymphoblastic leukemia.
    Proc Natl Acad Sci U S A. 2017 Dec 26. pii: 1717125115.
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  323. SU Y, Wei W, Robert L, Xue M, et al
    Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance.
    Proc Natl Acad Sci U S A. 2017 Dec 11. pii: 1712064115.
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    November 2017
  324. STRAUSS L, Stegger M, Akpaka PE, Alabi A, et al
    Origin, evolution, and global transmission of community-acquired Staphylococcus aureus ST8.
    Proc Natl Acad Sci U S A. 2017 Nov 20. pii: 201702472.
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    October 2017
  325. KANJEE U, Gruring C, Chaand M, Lin KM, et al
    CRISPR/Cas9 knockouts reveal genetic interaction between strain-transcendent erythrocyte determinants of Plasmodium falciparum invasion.
    Proc Natl Acad Sci U S A. 2017;114:E9356-E9365.
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  326. XUE X, Bredell BX, Anderson ER, Martin A, et al
    Quantitative proteomics identifies STEAP4 as a critical regulator of mitochondrial dysfunction linking inflammation and colon cancer.
    Proc Natl Acad Sci U S A. 2017 Oct 23. pii: 201712946.
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    September 2017
  327. OLDFIELD LM, Grzesik P, Voorhies AA, Alperovich N, et al
    Genome-wide engineering of an infectious clone of herpes simplex virus type 1 using synthetic genomics assembly methods.
    Proc Natl Acad Sci U S A. 2017 Sep 19. pii: 201700534.
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  328. BERER K, Gerdes LA, Cekanaviciute E, Jia X, et al
    Gut microbiota from multiple sclerosis patients enables spontaneous autoimmune encephalomyelitis in mice.
    Proc Natl Acad Sci U S A. 2017 Sep 11. pii: 201711233.
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    July 2017
  329. DEFRANCESCO AS, Masloboeva N, Syed AK, DeLoughery A, et al
    Genome-wide screen for genes involved in eDNA release during biofilm formation by Staphylococcus aureus.
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