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Articles published in Proc Natl Acad Sci U S A

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Single Articles


    June 2022
  1. SMALL CM, Healey HM, Currey MC, Beck EA, et al
    Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes.
    Proc Natl Acad Sci U S A. 2022;119:e2119602119.
    PubMed     Abstract available


  2. MARKOWITZ RHG, LaBella AL, Shi M, Rokas A, et al
    Microbiome-associated human genetic variants impact phenome-wide disease risk.
    Proc Natl Acad Sci U S A. 2022;119:e2200551119.
    PubMed     Abstract available


  3. LILLIE M, Hill J, Pettersson ME, Jern P, et al
    Expansion of a retrovirus lineage in the koala genome.
    Proc Natl Acad Sci U S A. 2022;119:e2201844119.
    PubMed     Abstract available


  4. GILBERT E, Shanmugam A, Cavalleri GL
    Revealing the recent demographic history of Europe via haplotype sharing in the UK Biobank.
    Proc Natl Acad Sci U S A. 2022;119:e2119281119.
    PubMed     Abstract available


  5. SIMONETTI B, Daly JL, Simon-Gracia L, Klein K, et al
    ESCPE-1 mediates retrograde endosomal sorting of the SARS-CoV-2 host factor Neuropilin-1.
    Proc Natl Acad Sci U S A. 2022;119:e2201980119.
    PubMed     Abstract available


  6. CAI R, Ren J, Guo M, Wei T, et al
    Dynamic intracellular exchange of nanomaterials' protein corona perturbs proteostasis and remodels cell metabolism.
    Proc Natl Acad Sci U S A. 2022;119:e2200363119.
    PubMed     Abstract available


    May 2022
  7. HORVATH S, Lu AT, Haghani A, Zoller JA, et al
    DNA methylation clocks for dogs and humans.
    Proc Natl Acad Sci U S A. 2022;119:e2120887119.
    PubMed     Abstract available


  8. MCHARG S, Booth L, Perveen R, Riba Garcia I, et al
    Mast cell infiltration of the choroid and protease release are early events in age-related macular degeneration associated with genetic risk at both chromosomes 1q32 and 10q26.
    Proc Natl Acad Sci U S A. 2022;119:e2118510119.
    PubMed     Abstract available


  9. LIU X, Zhang S, Cai Z, Kuang Z, et al
    Genomic insights into zokors' phylogeny and speciation in China.
    Proc Natl Acad Sci U S A. 2022;119:e2121819119.
    PubMed     Abstract available


  10. SINGH A, Spitzer MH, Joy JP, Kaileh M, et al
    Postmitotic G1 phase survivin drives mitogen-independent cell division of B lymphocytes.
    Proc Natl Acad Sci U S A. 2022;119:e2115567119.
    PubMed     Abstract available


  11. RIVOLLAT M, Thomas A, Ghesquiere E, Rohrlach AB, et al
    Ancient DNA gives new insights into a Norman Neolithic monumental cemetery dedicated to male elites.
    Proc Natl Acad Sci U S A. 2022;119:e2120786119.
    PubMed     Abstract available


    April 2022
  12. ROSE TD, Bechtler T, Ciora OA, Anh Lilian Le K, et al
    MoSBi: Automated signature mining for molecular stratification and subtyping.
    Proc Natl Acad Sci U S A. 2022;119:e2118210119.
    PubMed     Abstract available


  13. MILLS MC, Mathieson I
    The challenge of detecting recent natural selection in human populations.
    Proc Natl Acad Sci U S A. 2022;119:e2203237119.
    PubMed    


  14. MARCINIAK S, Bergey CM, Silva AM, Haluszko A, et al
    An integrative skeletal and paleogenomic analysis of stature variation suggests relatively reduced health for early European farmers.
    Proc Natl Acad Sci U S A. 2022;119:e2106743119.
    PubMed     Abstract available


  15. BREUSING C, Genetti M, Russell SL, Corbett-Detig RB, et al
    Horizontal transmission enables flexible associations with locally adapted symbiont strains in deep-sea hydrothermal vent symbioses.
    Proc Natl Acad Sci U S A. 2022;119:e2115608119.
    PubMed     Abstract available


    March 2022
  16. LANDIS MJ, Quintero I, Munoz MM, Zapata F, et al
    Phylogenetic inference of where species spread or split across barriers.
    Proc Natl Acad Sci U S A. 2022;119:e2116948119.
    PubMed     Abstract available


  17. RAO R, Leibler S
    Evolutionary dynamics, evolutionary forces, and robustness: A nonequilibrium statistical mechanics perspective.
    Proc Natl Acad Sci U S A. 2022;119:e2112083119.
    PubMed     Abstract available


  18. SEVERSON AL, Byrd BF, Mallott EK, Owings AC, et al
    Ancient and modern genomics of the Ohlone Indigenous population of California.
    Proc Natl Acad Sci U S A. 2022;119:e2111533119.
    PubMed     Abstract available


  19. WU W, Gao YD, Jiang DC, Lei J, et al
    Genomic adaptations for arboreal locomotion in Asian flying treefrogs.
    Proc Natl Acad Sci U S A. 2022;119:e2116342119.
    PubMed     Abstract available


  20. KRAINC T, Fuentes A
    Genetic ancestry in precision medicine is reshaping the race debate.
    Proc Natl Acad Sci U S A. 2022;119:e2203033119.
    PubMed    


  21. KOLDAEVA A, Tsai HF, Shen AQ, Pigolotti S, et al
    Population genetics in microchannels.
    Proc Natl Acad Sci U S A. 2022;119:e2120821119.
    PubMed     Abstract available


  22. ZHANG S, Nelson OD, Price IR, Zhu C, et al
    Long-chain fatty acyl coenzyme A inhibits NME1/2 and regulates cancer metastasis.
    Proc Natl Acad Sci U S A. 2022;119:e2117013119.
    PubMed     Abstract available


  23. BARBIERI S, Nurni Ravi A, Griffin EE, Gotta M, et al
    Modeling protein dynamics in Caenorhabditis elegans embryos reveals that the PLK-1 gradient relies on weakly coupled reaction-diffusion mechanisms.
    Proc Natl Acad Sci U S A. 2022;119:e2114205119.
    PubMed     Abstract available


  24. LU Q, Zhang Y, Hellner J, Giannini C, et al
    Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between brassinosteroid and auxin signaling.
    Proc Natl Acad Sci U S A. 2022;119:e2118220119.
    PubMed     Abstract available


  25. MCCULLOUGH EL, Whittington E, Singh A, Pitnick S, et al
    The life history of Drosophila sperm involves molecular continuity between male and female reproductive tracts.
    Proc Natl Acad Sci U S A. 2022;119:e2119899119.
    PubMed     Abstract available


  26. BOHL JA, Lay S, Chea S, Ahyong V, et al
    Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system.
    Proc Natl Acad Sci U S A. 2022;119:e2115285119.
    PubMed     Abstract available


  27. KLEINMAN-RUIZ D, Lucena-Perez M, Villanueva B, Fernandez J, et al
    Purging of deleterious burden in the endangered Iberian lynx.
    Proc Natl Acad Sci U S A. 2022;119:e2110614119.
    PubMed     Abstract available


  28. FERDOSI S, Tangeysh B, Brown TR, Everley PA, et al
    Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions.
    Proc Natl Acad Sci U S A. 2022;119:e2106053119.
    PubMed     Abstract available


  29. WINKLER J, Liu P, Phong K, Hinrichs JH, et al
    Bisphenol A replacement chemicals, BPF and BPS, induce protumorigenic changes in human mammary gland organoid morphology and proteome.
    Proc Natl Acad Sci U S A. 2022;119:e2115308119.
    PubMed     Abstract available


  30. WEIGERT MUNOZ A, Hoyer E, Schumacher K, Grognot M, et al
    Eukaryotic catecholamine hormones influence the chemotactic control of Vibrio campbellii by binding to the coupling protein CheW.
    Proc Natl Acad Sci U S A. 2022;119:e2118227119.
    PubMed     Abstract available


  31. GOVERNA V, Talbot H, Goncalves de Oliveira K, Cerezo-Magana M, et al
    Landscape of surfaceome and endocytome in human glioma is divergent and depends on cellular spatial organization.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


    February 2022
  32. SODELAND M, Jentoft S, Jorde PE, Mattingsdal M, et al
    Stabilizing selection on Atlantic cod supergenes through a millennium of extensive exploitation.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  33. DULIAS K, Foody MGB, Justeau P, Silva M, et al
    Ancient DNA at the edge of the world: Continental immigration and the persistence of Neolithic male lineages in Bronze Age Orkney.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  34. WAN J, Browne PJ, Hershey DM, Montabana E, et al
    A protease-mediated switch regulates the growth of magnetosome organelles in Magnetospirillum magneticum.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  35. CHAVEZ MONTES RA, Haber A, Pardo J, Powell RF, et al
    A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  36. MADRIGAL JL, Schoepp NG, Xu L, Powell CS, et al
    Characterizing cell interactions at scale with made-to-order droplet ensembles (MODEs).
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


    January 2022
  37. SHERKOW JS, Barker KB, Braverman I, Cook-Deegan R, et al
    Ethical, legal, and social issues in the Earth BioGenome Project.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  38. SINGHAL S, Colli GR, Grundler MR, Costa GC, et al
    No link between population isolation and speciation rate in squamate reptiles.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  39. CONTRERAS-LOPEZ O, Vidal EA, Riveras E, Alvarez JM, et al
    Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  40. MC CARTNEY AM, Anderson J, Liggins L, Hudson ML, et al
    Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  41. STEPHAN T, Burgess SM, Cheng H, Danko CG, et al
    Darwinian genomics and diversity in the tree of life.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  42. HOGG CJ, Ottewell K, Latch P, Rossetto M, et al
    Threatened Species Initiative: Empowering conservation action using genomic resources.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available



  43. Sequence locally, think globally: The Darwin Tree of Life Project.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  44. HUDDART JEA, Crawford AJ, Luna-Tapia AL, Restrepo S, et al
    EBP-Colombia and the bioeconomy: Genomics in the service of biodiversity conservation and sustainable development.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  45. KRESS WJ, Soltis DE, Kersey PJ, Wegrzyn JL, et al
    Green plant genomes: What we know in an era of rapidly expanding opportunities.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  46. LAWNICZAK MKN, Durbin R, Flicek P, Lindblad-Toh K, et al
    Standards recommendations for the Earth BioGenome Project.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  47. BLAXTER M, Archibald JM, Childers AK, Coddington JA, et al
    Why sequence all eukaryotes?
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  48. LEWIN HA, Richards S, Lieberman Aiden E, Allende ML, et al
    The Earth BioGenome Project 2020: Starting the clock.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed    


  49. KANAGARAJ R, Mitter R, Kantidakis T, Edwards MM, et al
    Integrated genome and transcriptome analyses reveal the mechanism of genome instability in ataxia with oculomotor apraxia 2.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  50. SHIGENOBU S, Hayashi Y, Watanabe D, Tokuda G, et al
    Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus: Gene duplication facilitates social evolution.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  51. SAKAI HD, Nur N, Kato S, Yuki M, et al
    Insight into the symbiotic lifestyle of DPANN archaea revealed by cultivation and genome analyses.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  52. BELLINGER MR, Wei J, Hartmann U, Cadiou H, et al
    Conservation of magnetite biomineralization genes in all domains of life and implications for magnetic sensing.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  53. LIU Y, Vasina VV, Kraner ME, Peters WS, et al
    Proteomics of isolated sieve tubes from Nicotiana tabacum: sieve element-specific proteins reveal differentiation of the endomembrane system.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  54. WILLI Y, Kristensen TN, Sgro CM, Weeks AR, et al
    Conservation genetics as a management tool: The five best-supported paradigms to assist the management of threatened species.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


    December 2021
  55. GUINDON S, De Maio N
    Accounting for spatial sampling patterns in Bayesian phylogeography.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  56. HOTALING S, Kelley JL, Frandsen PB
    Toward a genome sequence for every animal: Where are we now?
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  57. SONG JHT, Grant RL, Behrens VC, Kucka M, et al
    Genetic studies of human-chimpanzee divergence using stem cell fusions.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  58. JASPERS C, Ehrlich M, Pujolar JM, Kunzel S, et al
    Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  59. MA Q, Caillier SJ, Muzic S, Wilson MR, et al
    Specific hypomethylation programs underpin B cell activation in early multiple sclerosis.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  60. CHENG Y, Miller MJ, Zhang D, Xiong Y, et al
    Parallel genomic responses to historical climate change and high elevation in East Asian songbirds.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  61. KHAN A, Patel K, Shukla H, Viswanathan A, et al
    Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  62. VANDEWOUDE S, Vousden KH
    A celebration of the life of George Vande Woude.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  63. RYBARSKI JR, Hu K, Hill AM, Wilke CO, et al
    Metagenomic discovery of CRISPR-associated transposons.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    November 2021
  64. VASHISTH M, Cho S, Irianto J, Xia Y, et al
    Scaling concepts in 'omics: Nuclear lamin-B scales with tumor growth and often predicts poor prognosis, unlike fibrosis.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  65. AHERN OM, Whittaker KA, Williams TC, Hunt DE, et al
    Host genotype structures the microbiome of a globally dispersed marine phytoplankton.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  66. KARDOS M, Armstrong EE, Fitzpatrick SW, Hauser S, et al
    The crucial role of genome-wide genetic variation in conservation.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  67. LEE J, Lim C, Han TH, Andreani T, et al
    The E3 ubiquitin ligase adaptor Tango10 links the core circadian clock to neuropeptide and behavioral rhythms.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  68. CHEN W, Wu Y, Fritschi FB, Juenger TE, et al
    The genetic basis of the root economics spectrum in a perennial grass.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  69. XU C, Fang X, Lu T, Dean C, et al
    Antagonistic cotranscriptional regulation through ARGONAUTE1 and the THO/TREX complex orchestrates FLC transcriptional output.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  70. BIRDSEYE D, de Boer LA, Bai H, Zhou P, et al
    Plant height heterosis is quantitatively associated with expression levels of plastid ribosomal proteins.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  71. LAGUNAS-ROBLES G, Purcell J, Brelsford A
    Linked supergenes underlie split sex ratio and social organization in an ant.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  72. HASEGAWA Y, Struhl K
    Different SP1 binding dynamics at individual genomic loci in human cells.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  73. DELMONT TO
    Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  74. ESHEL G, Araus V, Undurraga S, Soto DC, et al
    Plant ecological genomics at the limits of life in the Atacama Desert.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  75. MOLIMAU-SAMASONI S, Woolner VH, Foliga ST, Robichon K, et al
    Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine "matalafi".
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  76. QIAO Q, Edger PP, Xue L, Qiong, et al
    Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.).
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  77. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
    Reply to Briggs et al.: Genomic integration and expression of SARS-CoV-2 sequences can explain prolonged or recurrent viral RNA detection.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


    October 2021
  78. VIEGAS J
    Profile of Jennifer Marshall Graves.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  79. GARCIA-SASTRE A
    Genomics serology to inform therapies and vaccines for arthritogenic alphaviruses.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


    September 2021
  80. FEUERBORN TR, Carmagnini A, Losey RJ, Nomokonova T, et al
    Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  81. SAGAR V, Kaelin CB, Natesh M, Reddy PA, et al
    High frequency of an otherwise rare phenotype in a small and isolated tiger population.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  82. SIX C, Ratin M, Marie D, Corre E, et al
    Marine Synechococcus picocyanobacteria: Light utilization across latitudes.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  83. HAGEDORN M, Page CA, O'Neil KL, Flores DM, et al
    Assisted gene flow using cryopreserved sperm in critically endangered coral.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  84. COPE OL, Keefover-Ring K, Kruger EL, Lindroth RL, et al
    Growth-defense trade-offs shape population genetic composition in an iconic forest tree species.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  85. NEVES DM, Kerkhoff AJ, Echeverria-Londono S, Merow C, et al
    The adaptive challenge of extreme conditions shapes evolutionary diversity of plant assemblages at continental scales.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  86. BUTTNER H, Niehs SP, Vandelannoote K, Cseresnyes Z, et al
    Bacterial endosymbionts protect beneficial soil fungus from nematode attack.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  87. YUAN Y, Zhang Y, Zhang P, Liu C, et al
    Comparative genomics provides insights into the aquatic adaptations of mammals.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  88. CHOI JY, Dai X, Alam O, Peng JZ, et al
    Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  89. ZHU Z, Fan Y, Kong Y, Lv J, et al
    DeepLINK: Deep learning inference using knockoffs with applications to genomics.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  90. FLEISCHER V, Gonzalez-Escamilla G, Ciolac D, Albrecht P, et al
    Translational value of choroid plexus imaging for tracking neuroinflammation in mice and humans.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  91. SYNEK L, Pleskot R, Sekeres J, Serrano N, et al
    Plasma membrane phospholipid signature recruits the plant exocyst complex via the EXO70A1 subunit.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  92. BRAMANTI B, Wu Y, Yang R, Cui Y, et al
    Assessing the origins of the European Plagues following the Black Death: A synthesis of genomic, historical, and ecological information.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  93. KARS ME, Basak AN, Onat OE, Bilguvar K, et al
    The genetic structure of the Turkish population reveals high levels of variation and admixture.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    August 2021
  94. HO CM, Jih J, Lai M, Li X, et al
    Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  95. NELSON DL, Caskey CT
    Stephen T. Warren: Human geneticist who advanced understanding of mutational mechanisms and developmental disorders.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  96. BIRZU G, Hallatschek O, Korolev KS
    Genealogical structure changes as range expansions transition from pushed to pulled.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  97. TOCZYDLOWSKI RH, Liggins L, Gaither MR, Anderson TJ, et al
    Poor data stewardship will hinder global genetic diversity surveillance.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  98. TRIPODI P, Rabanus-Wallace MT, Barchi L, Kale S, et al
    Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  99. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
    Response to Parry et al.: Strong evidence for genomic integration of SARS-CoV-2 sequences and expression in patient tissues.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  100. LEE S, Sieradzki ET, Nicolas AM, Walker RL, et al
    Methane-derived carbon flows into host-virus networks at different trophic levels in soil.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  101. WHEAT A, Yu C, Wang X, Burke AM, et al
    Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  102. QI Y, Nepal KK, Blodgett JAV
    A comparative metabologenomic approach reveals mechanistic insights into Streptomyces antibiotic crypticity.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  103. ROBERTS KINGMAN GA, Lee D, Jones FC, Desmet D, et al
    Longer or shorter spines: Reciprocal trait evolution in stickleback via triallelic regulatory changes in Stanniocalcin2a.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    July 2021
  104. RAVINDRAN S
    Profile of Patrick Cramer.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  105. DAVESNE D, Friedman M, Schmitt AD, Fernandez V, et al
    Fossilized cell structures identify an ancient origin for the teleost whole-genome duplication.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  106. MITCHELL KJ
    Ancient DNA from the koala lemur puts Madagascar on the paleogenomic map.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  107. RODRIGUES JA, Hsieh PH, Ruan D, Nishimura T, et al
    Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  108. OSVATIC JT, Wilkins LGE, Leibrecht L, Leray M, et al
    Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  109. LEONARD MM, Valitutti F, Karathia H, Pujolassos M, et al
    Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  110. VIEGAS J
    Profile of Claude Desplan.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  111. ROYCROFT E, MacDonald AJ, Moritz C, Moussalli A, et al
    Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    June 2021
  112. DEVIESE T, Abrams G, Hajdinjak M, Pirson S, et al
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    Character displacement drives trait divergence in a continental fauna.
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  225. CARBALLAR-LEJARAZU R, Ogaugwu C, Tushar T, Kelsey A, et al
    Next-generation gene drive for population modification of the malaria vector mosquito, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2020 Aug 24. pii: 2010214117.
    PubMed     Abstract available


  226. LA CONO V, Messina E, Rohde M, Arcadi E, et al
    Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides.
    Proc Natl Acad Sci U S A. 2020;117:20223-20234.
    PubMed     Abstract available


  227. AMSTER G, Murphy DA, Milligan WR, Sella G, et al
    Changes in life history and population size can explain the relative neutral diversity levels on X and autosomes in extant human populations.
    Proc Natl Acad Sci U S A. 2020;117:20063-20069.
    PubMed     Abstract available


  228. ABU RAYYAN A, Kamal L, Casadei S, Brownstein Z, et al
    Genomic analysis of inherited hearing loss in the Palestinian population.
    Proc Natl Acad Sci U S A. 2020;117:20070-20076.
    PubMed     Abstract available


  229. PARK A, Oh S, Jung KL, Choi UY, et al
    Global epigenomic analysis of KSHV-infected primary effusion lymphoma identifies functional MYC superenhancers and enhancer RNAs.
    Proc Natl Acad Sci U S A. 2020 Aug 18. pii: 1922216117.
    PubMed     Abstract available


  230. ULHUQ FR, Gomes MC, Duggan GM, Guo M, et al
    A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition.
    Proc Natl Acad Sci U S A. 2020 Aug 7. pii: 2006110117.
    PubMed     Abstract available


  231. SOKOLOWSKI MB
    Honey bee colony aggression and indirect genetic effects.
    Proc Natl Acad Sci U S A. 2020;117:18148-18150.
    PubMed    


    July 2020
  232. PARASKEVOPOULOU S, Pirzer F, Goldmann N, Schmid J, et al
    Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus.
    Proc Natl Acad Sci U S A. 2020;117:17977-17983.
    PubMed     Abstract available


  233. SANDOVAL-CASTILLO J, Gates K, Brauer CJ, Smith S, et al
    Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions.
    Proc Natl Acad Sci U S A. 2020;117:17112-17121.
    PubMed     Abstract available


  234. PEREDO EL, Cardon ZG
    Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae.
    Proc Natl Acad Sci U S A. 2020;117:17438-17445.
    PubMed     Abstract available


  235. HAWCO NJ, McIlvin MM, Bundy RM, Tagliabue A, et al
    Minimal cobalt metabolism in the marine cyanobacterium Prochlorococcus.
    Proc Natl Acad Sci U S A. 2020;117:15740-15747.
    PubMed     Abstract available


  236. HE C, Song W, Weston TA, Tran C, et al
    Peroxidasin-mediated bromine enrichment of basement membranes.
    Proc Natl Acad Sci U S A. 2020;117:15827-15836.
    PubMed     Abstract available


  237. LAY AC, Barrington AF, Hurcombe JA, Ramnath RD, et al
    A role for NPY-NPY2R signaling in albuminuric kidney disease.
    Proc Natl Acad Sci U S A. 2020;117:15862-15873.
    PubMed     Abstract available


    June 2020
  238. RAVINDRAN S
    QnAs with Zachary B. Lippman.
    Proc Natl Acad Sci U S A. 2020;117:14624-14625.
    PubMed    


  239. SU QP, Zhao ZW, Meng L, Ding M, et al
    Superresolution imaging reveals spatiotemporal propagation of human replication foci mediated by CTCF-organized chromatin structures.
    Proc Natl Acad Sci U S A. 2020;117:15036-15046.
    PubMed     Abstract available


  240. VENO MT, Reschke CR, Morris G, Connolly NMC, et al
    A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy.
    Proc Natl Acad Sci U S A. 2020 Jun 24. pii: 1919313117.
    PubMed     Abstract available


  241. ZHANG J, Peters RJ
    Why are momilactones always associated with biosynthetic gene clusters in plants?
    Proc Natl Acad Sci U S A. 2020;117:13867-13869.
    PubMed    


  242. RAVINDRAN S
    Profile of Christopher A. Walsh.
    Proc Natl Acad Sci U S A. 2020;117:13861-13863.
    PubMed    


  243. BOULARD M, Rucli S, Edwards JR, Bestor TH, et al
    Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters.
    Proc Natl Acad Sci U S A. 2020;117:14292-14298.
    PubMed     Abstract available


  244. WU X, Cao B, Aquino P, Chiu TP, et al
    Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria.
    Proc Natl Acad Sci U S A. 2020;117:14322-14330.
    PubMed     Abstract available


  245. HEALTON SE, Pinto HD, Mishra LN, Hamilton GA, et al
    H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction.
    Proc Natl Acad Sci U S A. 2020;117:14251-14258.
    PubMed     Abstract available


  246. KRESS WJ, Mazet JAK, Hebert PDN
    Opinion: Intercepting pandemics through genomics.
    Proc Natl Acad Sci U S A. 2020;117:13852-13855.
    PubMed    


  247. RAUSELL A, Luo Y, Lopez M, Seeleuthner Y, et al
    Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes.
    Proc Natl Acad Sci U S A. 2020;117:13626-13636.
    PubMed     Abstract available


  248. ROACH TNF, Little M, Arts MGI, Huckeba J, et al
    A multiomic analysis of in situ coral-turf algal interactions.
    Proc Natl Acad Sci U S A. 2020;117:13588-13595.
    PubMed     Abstract available


  249. MAHAMKALI V, Valgepea K, de Souza Pinto Lemgruber R, Plan M, et al
    Redox controls metabolic robustness in the gas-fermenting acetogen Clostridium autoethanogenum.
    Proc Natl Acad Sci U S A. 2020;117:13168-13175.
    PubMed     Abstract available


  250. DEGRANDMAISON J, Abdallah K, Blais V, Genier S, et al
    In vivo mapping of a GPCR interactome using knockin mice.
    Proc Natl Acad Sci U S A. 2020;117:13105-13116.
    PubMed     Abstract available


    May 2020
  251. BLATT M, Gusev A, Polyakov Y, Goldwasser S, et al
    Secure large-scale genome-wide association studies using homomorphic encryption.
    Proc Natl Acad Sci U S A. 2020;117:11608-11613.
    PubMed     Abstract available


  252. HUANG J, Khademi M, Fugger L, Lindhe O, et al
    Inflammation-related plasma and CSF biomarkers for multiple sclerosis.
    Proc Natl Acad Sci U S A. 2020 May 26. pii: 1912839117.
    PubMed     Abstract available


  253. PINEDA SS, Chin YK, Undheim EAB, Senff S, et al
    Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.
    Proc Natl Acad Sci U S A. 2020;117:11399-11408.
    PubMed     Abstract available


  254. RATHMANN H, Reyes-Centeno H
    Testing the utility of dental morphological trait combinations for inferring human neutral genetic variation.
    Proc Natl Acad Sci U S A. 2020;117:10769-10777.
    PubMed     Abstract available


  255. MOURKAS E, Taylor AJ, Meric G, Bayliss SC, et al
    Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni.
    Proc Natl Acad Sci U S A. 2020;117:11018-11028.
    PubMed     Abstract available


  256. DE MANUEL M, Barnett R, Sandoval-Velasco M, Yamaguchi N, et al
    The evolutionary history of extinct and living lions.
    Proc Natl Acad Sci U S A. 2020;117:10927-10934.
    PubMed     Abstract available


  257. CHAKRABORTY A, Ruff SE, Dong X, Ellefson ED, et al
    Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres.
    Proc Natl Acad Sci U S A. 2020;117:11029-11037.
    PubMed     Abstract available


  258. LONG JZ
    Proteomics illuminates fat as key tissue in aging.
    Proc Natl Acad Sci U S A. 2020;117:10111-10112.
    PubMed    


  259. PETIT CS, Lee JJ, Boland S, Swarup S, et al
    Inhibition of sphingolipid synthesis improves outcomes and survival in GARP mutant wobbler mice, a model of motor neuron degeneration.
    Proc Natl Acad Sci U S A. 2020;117:10565-10574.
    PubMed     Abstract available


  260. LYNCH M
    The evolutionary scaling of cellular traits imposed by the drift barrier.
    Proc Natl Acad Sci U S A. 2020;117:10435-10444.
    PubMed     Abstract available


  261. DEBOUTTE W, Beller L, Yinda CK, Maes P, et al
    Honey-bee-associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential.
    Proc Natl Acad Sci U S A. 2020;117:10511-10519.
    PubMed     Abstract available


  262. DONIHUE CM, Kowaleski AM, Losos JB, Algar AC, et al
    Hurricane effects on Neotropical lizards span geographic and phylogenetic scales.
    Proc Natl Acad Sci U S A. 2020;117:10429-10434.
    PubMed     Abstract available


  263. MCDERMOTT A
    Inner Workings: Molecular biologists offer "wartime service" in the effort to test for COVID-19.
    Proc Natl Acad Sci U S A. 2020;117:9656-9659.
    PubMed    


  264. CRANE PR, Friis EM
    Water lilies, loss of woodiness, and model systems.
    Proc Natl Acad Sci U S A. 2020;117:9674-9676.
    PubMed    


  265. YU Q, Xiao H, Jedrychowski MP, Schweppe DK, et al
    Sample multiplexing for targeted pathway proteomics in aging mice.
    Proc Natl Acad Sci U S A. 2020;117:9723-9732.
    PubMed     Abstract available


  266. PARDO J, Man Wai C, Chay H, Madden CF, et al
    Intertwined signatures of desiccation and drought tolerance in grasses.
    Proc Natl Acad Sci U S A. 2020;117:10079-10088.
    PubMed     Abstract available


  267. CAMMACK AJ, Moudgil A, Chen J, Vasek MJ, et al
    A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues.
    Proc Natl Acad Sci U S A. 2020;117:10003-10014.
    PubMed     Abstract available


    April 2020
  268. FLYNN JM, Hubley R, Goubert C, Rosen J, et al
    RepeatModeler2 for automated genomic discovery of transposable element families.
    Proc Natl Acad Sci U S A. 2020;117:9451-9457.
    PubMed     Abstract available


  269. LEE S, Hu Y, Loo SK, Tan Y, et al
    Landscape analysis of adjacent gene rearrangements reveals BCL2L14-ETV6 gene fusions in more aggressive triple-negative breast cancer.
    Proc Natl Acad Sci U S A. 2020 Apr 22. pii: 1921333117.
    PubMed     Abstract available


  270. CHERRY TJ, Yang MG, Harmin DA, Tao P, et al
    Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease.
    Proc Natl Acad Sci U S A. 2020;117:9001-9012.
    PubMed     Abstract available


  271. OBERHOFER G, Ivy T, Hay BA
    Gene drive and resilience through renewal with next generation Cleave and Rescue selfish genetic elements.
    Proc Natl Acad Sci U S A. 2020;117:9013-9021.
    PubMed     Abstract available


  272. CAMPBELL K, Westholm J, Kasvandik S, Di Bartolomeo F, et al
    Building blocks are synthesized on demand during the yeast cell cycle.
    Proc Natl Acad Sci U S A. 2020;117:7575-7583.
    PubMed     Abstract available


  273. LEUNG KK, Wilson GM, Kirkemo LL, Riley NM, et al
    Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes.
    Proc Natl Acad Sci U S A. 2020;117:7764-7775.
    PubMed     Abstract available


  274. DAVIS TH
    QnAs with Jens Nielsen.
    Proc Natl Acad Sci U S A. 2020;117:7548-7549.
    PubMed    


  275. YE M, Goudot C, Hoyler T, Lemoine B, et al
    Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers.
    Proc Natl Acad Sci U S A. 2020;117:7905-7916.
    PubMed     Abstract available


  276. YADAV V, Sun S, Coelho MA, Heitman J, et al
    Centromere scission drives chromosome shuffling and reproductive isolation.
    Proc Natl Acad Sci U S A. 2020;117:7917-7928.
    PubMed     Abstract available


    March 2020
  277. OYAS O, Borrell S, Trauner A, Zimmermann M, et al
    Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis.
    Proc Natl Acad Sci U S A. 2020 Mar 30. pii: 1915551117.
    PubMed     Abstract available


  278. ALLEN JP, Ozer EA, Minasov G, Shuvalova L, et al
    A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant.
    Proc Natl Acad Sci U S A. 2020;117:6811-6821.
    PubMed     Abstract available


  279. SLODKOWICZ G, Goldman N
    Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals.
    Proc Natl Acad Sci U S A. 2020;117:5977-5986.
    PubMed     Abstract available


  280. SEIF Y, Choudhary KS, Hefner Y, Anand A, et al
    Metabolic and genetic basis for auxotrophies in Gram-negative species.
    Proc Natl Acad Sci U S A. 2020;117:6264-6273.
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  281. LIN Y, Wozniak JM, Grimsey NJ, Girada S, et al
    Phosphoproteomic analysis of protease-activated receptor-1 biased signaling reveals unique modulators of endothelial barrier function.
    Proc Natl Acad Sci U S A. 2020;117:5039-5048.
    PubMed     Abstract available


  282. HARRISON S, Spasojevic MJ, Li D
    Climate and plant community diversity in space and time.
    Proc Natl Acad Sci U S A. 2020;117:4464-4470.
    PubMed     Abstract available


  283. ZHANG Y, Wendte JM, Ji L, Schmitz RJ, et al
    Natural variation in DNA methylation homeostasis and the emergence of epialleles.
    Proc Natl Acad Sci U S A. 2020;117:4874-4884.
    PubMed     Abstract available


  284. ZHANG X, Hong D, Ma S, Ward T, et al
    Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage.
    Proc Natl Acad Sci U S A. 2020;117:4864-4873.
    PubMed     Abstract available


  285. KESAVAN R, Fromel T, Zukunft S, Laban H, et al
    Cyp2c44 regulates prostaglandin synthesis, lymphangiogenesis, and metastasis in a mouse model of breast cancer.
    Proc Natl Acad Sci U S A. 2020 Mar 2. pii: 1921381117.
    PubMed     Abstract available


  286. YANG Q, Zhao X, Lemey P, Suchard MA, et al
    Assessing the role of live poultry trade in community-structured transmission of avian influenza in China.
    Proc Natl Acad Sci U S A. 2020 Mar 2. pii: 1906954117.
    PubMed     Abstract available


    February 2020
  287. BELLIS ES, Kelly EA, Lorts CM, Gao H, et al
    Genomics of sorghum local adaptation to a parasitic plant.
    Proc Natl Acad Sci U S A. 2020;117:4243-4251.
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  288. FEDOROV VB, Trucchi E, Goropashnaya AV, Waltari E, et al
    Impact of past climate warming on genomic diversity and demographic history of collared lemmings across the Eurasian Arctic.
    Proc Natl Acad Sci U S A. 2020;117:3026-3033.
    PubMed     Abstract available


  289. GRAHAM G, Csicsery N, Stasiowski E, Thouvenin G, et al
    Genome-scale transcriptional dynamics and environmental biosensing.
    Proc Natl Acad Sci U S A. 2020;117:3301-3306.
    PubMed     Abstract available


  290. MCDERMOTT A
    Inner Workings: A microscopic mystery at the heart of mass-coral bleaching.
    Proc Natl Acad Sci U S A. 2020;117:2232-2235.
    PubMed    


  291. CASTRO E SILVA MA, Nunes K, Lemes RB, Mas-Sandoval A, et al
    Genomic insight into the origins and dispersal of the Brazilian coastal natives.
    Proc Natl Acad Sci U S A. 2020;117:2372-2377.
    PubMed     Abstract available


  292. KESSLER MD, Loesch DP, Perry JA, Heard-Costa NL, et al
    De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population.
    Proc Natl Acad Sci U S A. 2020;117:2560-2569.
    PubMed     Abstract available


    January 2020
  293. SURAN M
    Finding the tail end: The discovery of RNA splicing.
    Proc Natl Acad Sci U S A. 2020;117:1829-1832.
    PubMed    


  294. MILLER AC, Comellas AP, Hornick DB, Stoltz DA, et al
    Cystic fibrosis carriers are at increased risk for a wide range of cystic fibrosis-related conditions.
    Proc Natl Acad Sci U S A. 2020;117:1621-1627.
    PubMed     Abstract available


  295. ROWAN J, Beaudrot L, Franklin J, Reed KE, et al
    Geographically divergent evolutionary and ecological legacies shape mammal biodiversity in the global tropics and subtropics.
    Proc Natl Acad Sci U S A. 2020;117:1559-1565.
    PubMed     Abstract available


  296. SOKOLOWSKI MB
    Functional testing of ASD-associated genes.
    Proc Natl Acad Sci U S A. 2020;117:26-28.
    PubMed    


  297. NIETZEL T, Mostertz J, Ruberti C, Nee G, et al
    Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination.
    Proc Natl Acad Sci U S A. 2020;117:741-751.
    PubMed     Abstract available


  298. MCDIARMID TA, Belmadani M, Liang J, Meili F, et al
    Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.
    Proc Natl Acad Sci U S A. 2020;117:656-667.
    PubMed     Abstract available


  299. MERWIN NJ, Mousa WK, Dejong CA, Skinnider MA, et al
    DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products.
    Proc Natl Acad Sci U S A. 2020;117:371-380.
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    December 2019
  300. ADOLFI A, Poulton B, Anthousi A, Macilwee S, et al
    Functional genetic validation of key genes conferring insecticide resistance in the major African malaria vector, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2019 Dec 4. pii: 1914633116.
    PubMed     Abstract available


  301. YILDIRIM F, Ng CW, Kappes V, Ehrenberger T, et al
    Early epigenomic and transcriptional changes reveal Elk-1 transcription factor as a therapeutic target in Huntington's disease.
    Proc Natl Acad Sci U S A. 2019;116:24840-24851.
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    November 2019
  302. QIAN H, Deng T, Jin Y, Mao L, et al
    Phylogenetic dispersion and diversity in regional assemblages of seed plants in China.
    Proc Natl Acad Sci U S A. 2019;116:23192-23201.
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    October 2019
  303. BROWN TS, Challagundla L, Baugh EH, Omar SV, et al
    Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa.
    Proc Natl Acad Sci U S A. 2019 Oct 28. pii: 1906636116.
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  304. COX SL, Ruff CB, Maier RM, Mathieson I, et al
    Genetic contributions to variation in human stature in prehistoric Europe.
    Proc Natl Acad Sci U S A. 2019;116:21484-21492.
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  305. LI G, Eckert MA, Chang JW, Montgomery JE, et al
    Ultrasensitive, multiplexed chemoproteomic profiling with soluble activity-dependent proximity ligation.
    Proc Natl Acad Sci U S A. 2019;116:21493-21500.
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  306. MARCOVITZ A, Turakhia Y, Chen HI, Gloudemans M, et al
    A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales.
    Proc Natl Acad Sci U S A. 2019;116:21094-21103.
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  307. MUNDERLOH UG
    The beginning of an era of functional genomics in Rickettsiology is steeped in history.
    Proc Natl Acad Sci U S A. 2019;116:20252-20253.
    PubMed    


  308. NEEDHAM DM, Yoshizawa S, Hosaka T, Poirier C, et al
    A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.
    Proc Natl Acad Sci U S A. 2019;116:20574-20583.
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  309. RUDMAN SM, Greenblum S, Hughes RC, Rajpurohit S, et al
    Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2019;116:20025-20032.
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  310. RYAN SF, Lombaert E, Espeset A, Vila R, et al
    Global invasion history of the agricultural pest butterfly Pieris rapae revealed with genomics and citizen science.
    Proc Natl Acad Sci U S A. 2019;116:20015-20024.
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    September 2019
  311. GEBER J, Tromp M, Scott A, Bouwman A, et al
    Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine.
    Proc Natl Acad Sci U S A. 2019;116:19380-19385.
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  312. LIU K, Theusch E, Zhou Y, Ashuach T, et al
    GeneFishing to reconstruct context specific portraits of biological processes.
    Proc Natl Acad Sci U S A. 2019;116:18943-18950.
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  313. KUMAR S, Clarke D, Gerstein MB
    Leveraging protein dynamics to identify cancer mutational hotspots using 3D structures.
    Proc Natl Acad Sci U S A. 2019;116:18962-18970.
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  314. TOEWS DPL, Taylor SA, Streby HM, Kramer GR, et al
    Selection on VPS13A linked to migration in a songbird.
    Proc Natl Acad Sci U S A. 2019;116:18272-18274.
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  315. TIAN C, Clauser KR, Ohlund D, Rickelt S, et al
    Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells.
    Proc Natl Acad Sci U S A. 2019 Sep 4. pii: 1908626116.
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  316. HOPKINS BR, Sepil I, Thezenas ML, Craig JF, et al
    Divergent allocation of sperm and the seminal proteome along a competition gradient in Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2019;116:17925-17933.
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  317. FRAZAO N, Sousa A, Lassig M, Gordo I, et al
    Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut.
    Proc Natl Acad Sci U S A. 2019;116:17906-17915.
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    August 2019
  318. SHEN Y, Grisdale CJ, Islam SA, Bose P, et al
    Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments.
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  319. KREMER D, Perron H, Kury P
    Reply to Ruprecht and Mayer: Unearthing genomic fossils in the pathogenesis of multiple sclerosis.
    Proc Natl Acad Sci U S A. 2019 Aug 27. pii: 1912315116.
    PubMed    


  320. PERSI E, Prandi D, Wolf YI, Pozniak Y, et al
    Proteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues.
    Proc Natl Acad Sci U S A. 2019;116:16987-16996.
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  321. STEINRUCKEN M, Kamm J, Spence JP, Song YS, et al
    Inference of complex population histories using whole-genome sequences from multiple populations.
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  322. SOTOUDEH R, Harris KM, Conley D
    Effects of the peer metagenomic environment on smoking behavior.
    Proc Natl Acad Sci U S A. 2019;116:16302-16307.
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  323. ARCHIBALD JM
    Genomics reveals alga-associated cyanobacteria hiding in plain sight.
    Proc Natl Acad Sci U S A. 2019;116:15757-15759.
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  324. AZAR B
    QnAs with David Reich.
    Proc Natl Acad Sci U S A. 2019;116:15752-15753.
    PubMed    


  325. NAKAYAMA T, Nomura M, Takano Y, Tanifuji G, et al
    Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host.
    Proc Natl Acad Sci U S A. 2019;116:15973-15978.
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    July 2019
  326. OUYANG W, Han J
    Universal amplification-free molecular diagnostics by billion-fold hierarchical nanofluidic concentration.
    Proc Natl Acad Sci U S A. 2019 Jul 29. pii: 1904513116.
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  327. GREENLON A, Chang PL, Damtew ZM, Muleta A, et al
    Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.
    Proc Natl Acad Sci U S A. 2019;116:15200-15209.
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  328. DARNET S, Dragalzew AC, Amaral DB, Sousa JF, et al
    Deep evolutionary origin of limb and fin regeneration.
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  329. HAMM JN, Erdmann S, Eloe-Fadrosh EA, Angeloni A, et al
    Unexpected host dependency of Antarctic Nanohaloarchaeota.
    Proc Natl Acad Sci U S A. 2019;116:14661-14670.
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  330. CALLIER V
    Core Concept: Gene transfers from bacteria and viruses may be shaping complex organisms.
    Proc Natl Acad Sci U S A. 2019;116:13714-13716.
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  331. LOBKOVSKY AE, Levi L, Wolf YI, Maiers M, et al
    Multiplicative fitness, rapid haplotype discovery, and fitness decay explain evolution of human MHC.
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  332. RINKER DC, Specian NK, Zhao S, Gibbons JG, et al
    Polar bear evolution is marked by rapid changes in gene copy number in response to dietary shift.
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    June 2019
  333. CACERES PS, Gravotta D, Zager PJ, Dephoure N, et al
    Quantitative proteomics of MDCK cells identify unrecognized roles of clathrin adaptor AP-1 in polarized distribution of surface proteins.
    Proc Natl Acad Sci U S A. 2019;116:11796-11805.
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  334. LEWIS VM, Saunders LM, Larson TA, Bain EJ, et al
    Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores.
    Proc Natl Acad Sci U S A. 2019;116:11806-11811.
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  335. XU L, Stige LC, Leirs H, Neerinckx S, et al
    Historical and genomic data reveal the influencing factors on global transmission velocity of plague during the Third Pandemic.
    Proc Natl Acad Sci U S A. 2019;116:11833-11838.
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  336. KANG L, Rashkovetsky E, Michalak K, Garner HR, et al
    Genomic divergence and adaptive convergence in Drosophila simulans from Evolution Canyon, Israel.
    Proc Natl Acad Sci U S A. 2019;116:11839-11844.
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  337. TORGASHEVA AA, Malinovskaya LP, Zadesenets KS, Karamysheva TV, et al
    Germline-restricted chromosome (GRC) is widespread among songbirds.
    Proc Natl Acad Sci U S A. 2019;116:11845-11850.
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  338. TAKASHI Y, Kosako H, Sawatsubashi S, Kinoshita Y, et al
    Activation of unliganded FGF receptor by extracellular phosphate potentiates proteolytic protection of FGF23 by its O-glycosylation.
    Proc Natl Acad Sci U S A. 2019;116:11418-11427.
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    May 2019
  339. MA X, Huang J
    Predicting clinical outcome of therapy-resistant prostate cancer.
    Proc Natl Acad Sci U S A. 2019 May 21. pii: 1906812116.
    PubMed    


  340. BRIGHAM BS, Kitzrow JP, Reyes JC, Musier-Forsyth K, et al
    Intrinsic conformational dynamics of the HIV-1 genomic RNA 5'UTR.
    Proc Natl Acad Sci U S A. 2019 May 8. pii: 1902271116.
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  341. REYNOLDS AW, Mata-Miguez J, Miro-Herrans A, Briggs-Cloud M, et al
    Comparing signals of natural selection between three Indigenous North American populations.
    Proc Natl Acad Sci U S A. 2019;116:9312-9317.
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  342. ABIDA W, Cyrta J, Heller G, Prandi D, et al
    Genomic correlates of clinical outcome in advanced prostate cancer.
    Proc Natl Acad Sci U S A. 2019 May 6. pii: 1902651116.
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    April 2019
  343. DOLGIN E
    Inner Workings: Genomics blazes a trail to improved cannabis cultivation.
    Proc Natl Acad Sci U S A. 2019;116:8638-8640.
    PubMed    


  344. MIRANDA A, Hamilton PT, Zhang AW, Pattnaik S, et al
    Cancer stemness, intratumoral heterogeneity, and immune response across cancers.
    Proc Natl Acad Sci U S A. 2019;116:9020-9029.
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  345. AMINI S, Tadayon M, Loke JJ, Kumar A, et al
    A diecast mineralization process forms the tough mantis shrimp dactyl club.
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  346. PALACIOS-FLORES K, Castillo A, Uribe C, Garcia Sotelo J, et al
    Prediction and identification of recurrent genomic rearrangements that generate chimeric chromosomes in Saccharomyces cerevisiae.
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  347. BEMMELS JB, Knowles LL, Dick CW
    Genomic evidence of survival near ice sheet margins for some, but not all, North American trees.
    Proc Natl Acad Sci U S A. 2019;116:8431-8436.
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  348. KOTELNIKOVA E, Kiani NA, Messinis D, Pertsovskaya I, et al
    MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis.
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  349. VENETZ JE, Del Medico L, Wolfle A, Schachle P, et al
    Chemical synthesis rewriting of a bacterial genome to achieve design flexibility and biological functionality.
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    March 2019
  350. NICAISE AM, Wagstaff LJ, Willis CM, Paisie C, et al
    Cellular senescence in progenitor cells contributes to diminished remyelination potential in progressive multiple sclerosis.
    Proc Natl Acad Sci U S A. 2019 Mar 25. pii: 1818348116.
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  351. ZHOU J, Li Y
    SNPs deciding the rapid growth of cyanobacteria are alterable.
    Proc Natl Acad Sci U S A. 2019;116:3945.
    PubMed    


  352. UNGERER J, Wendt KE, Hendry JI, Maranas CD, et al
    Reply to Zhou and Li: Plasticity of the genomic haplotype of Synechococcus elongatus leads to rapid strain adaptation under laboratory conditions.
    Proc Natl Acad Sci U S A. 2019;116:3946-3947.
    PubMed    


  353. SHERIDAN MA, Yang Y, Jain A, Lyons AS, et al
    Early onset preeclampsia in a model for human placental trophoblast.
    Proc Natl Acad Sci U S A. 2019;116:4336-4345.
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  354. KUNOVA BOSAKOVA M, Nita A, Gregor T, Varecha M, et al
    Fibroblast growth factor receptor influences primary cilium length through an interaction with intestinal cell kinase.
    Proc Natl Acad Sci U S A. 2019;116:4316-4325.
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