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COVID-19: Daily Top 10 Papers


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Articles published in Proc Natl Acad Sci U S A

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    November 2021
  1. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
    Reply to Briggs et al.: Genomic integration and expression of SARS-CoV-2 sequences can explain prolonged or recurrent viral RNA detection.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


    September 2021
  2. FEUERBORN TR, Carmagnini A, Losey RJ, Nomokonova T, et al
    Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  3. SAGAR V, Kaelin CB, Natesh M, Reddy PA, et al
    High frequency of an otherwise rare phenotype in a small and isolated tiger population.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    August 2021
  4. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
    Response to Parry et al.: Strong evidence for genomic integration of SARS-CoV-2 sequences and expression in patient tissues.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


    June 2021
  5. DEVIESE T, Abrams G, Hajdinjak M, Pirson S, et al
    Reply to Van Peer: Direct radiocarbon dating and ancient genomic analysis reveal the true age of the Neanderthals at Spy Cave.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


    April 2021
  6. PALACIOS-FLORES K, Garcia-Sotelo J, Castillo A, Uribe C, et al
    Perfect Match Genomic Landscape strategy: Refinement and customization of reference genomes.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    March 2021
  7. GENG J, Ji B, Li G, Lopez-Isunza F, et al
    CODY enables quantitatively spatiotemporal predictions on in vivo gut microbial variability induced by diet intervention.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  8. LARENA M, Sanchez-Quinto F, Sjodin P, McKenna J, et al
    Multiple migrations to the Philippines during the last 50,000 years.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  9. DEVIESE T, Abrams G, Hajdinjak M, Pirson S, et al
    Reevaluating the timing of Neanderthal disappearance in Northwest Europe.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  10. KAWAKUBO S, Gao F, Li S, Tan Z, et al
    Genomic analysis of the brassica pathogen turnip mosaic potyvirus reveals its spread along the former trade routes of the Silk Road.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  11. SINGH-BABAK SD, Babak T, Fraser HB, Johnson AD, et al
    Lineage-specific selection and the evolution of virulence in the Candida clade.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  12. WEISSMAN JL, Hou S, Fuhrman JA
    Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  13. RAYO J, Gregor R, Jacob NT, Dandela R, et al
    Immunoediting role for major vault protein in apoptotic signaling induced by bacterial N-acyl homoserine lactones.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  14. XIA K, Hagan JT, Fu L, Sheetz BS, et al
    Synthetic heparan sulfate standards and machine learning facilitate the development of solid-state nanopore analysis.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  15. ANDERSEN SB, Schluter J
    A metagenomics approach to investigate microbiome sociobiology.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  16. WARD BA, Cael BB, Collins S, Young CR, et al
    Selective constraints on global plankton dispersal.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  17. TEIXEIRA JC, Huber CD
    The inflated significance of neutral genetic diversity in conservation genetics.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  18. NADEAU SA, Vaughan TG, Scire J, Huisman JS, et al
    The origin and early spread of SARS-CoV-2 in Europe.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  19. PLESS E, Saarman NP, Powell JR, Caccone A, et al
    A machine-learning approach to map landscape connectivity in Aedes aegypti with genetic and environmental data.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    February 2021
  20. VIEGAS J
    Profile of Mark Stoneking.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  21. LUND-HANSEN KK, Olito C, Morrow EH, Abbott JK, et al
    Sexually antagonistic coevolution between the sex chromosomes of Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  22. ORKIN JD, Montague MJ, Tejada-Martinez D, de Manuel M, et al
    The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  23. ZHANG W, Xie C, Ullrich K, Zhang YE, et al
    The mutational load in natural populations is significantly affected by high primary rates of retroposition.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  24. CARD KJ, Thomas MD, Graves JL Jr, Barrick JE, et al
    Genomic evolution of antibiotic resistance is contingent on genetic background following a long-term experiment with Escherichia coli.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    January 2021
  25. ENBODY ED, Pettersson ME, Sprehn CG, Palm S, et al
    Ecological adaptation in European eels is based on phenotypic plasticity.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  26. BAKHTIN Y, Katsnelson MI, Wolf YI, Koonin EV, et al
    Evolution in the weak-mutation limit: Stasis periods punctuated by fast transitions between saddle points on the fitness landscape.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  27. LEVINE ZG, Potter SC, Joiner CM, Fei GQ, et al
    Mammalian cell proliferation requires noncatalytic functions of O-GlcNAc transferase.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  28. LIU J, Jang JY, Pirooznia M, Liu S, et al
    The secretome mouse provides a genetic platform to delineate tissue-specific in vivo secretion.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  29. TENA J, Lebrilla CB
    Glycomic profiling and the mammalian brain.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed    


  30. WHITE MA, Bonfini A, Wolfner MF, Buchon N, et al
    Drosophila melanogaster sex peptide regulates mated female midgut morphology and physiology.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  31. ZHOU L, Miller C, Miraglia LJ, Romero A, et al
    A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  32. SARBANES SL, Blomen VA, Lam E, Heissel S, et al
    E3 ubiquitin ligase Mindbomb 1 facilitates nuclear delivery of adenovirus genomes.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    December 2020
  33. TAOUFIQ Z, Ninov M, Villar-Briones A, Wang HY, et al
    Hidden proteome of synaptic vesicles in the mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:33586-33596.
    PubMed     Abstract available


  34. RINCON-SANDOVAL M, Duarte-Ribeiro E, Davis AM, Santaquiteria A, et al
    Evolutionary determinism and convergence associated with water-column transitions in marine fishes.
    Proc Natl Acad Sci U S A. 2020;117:33396-33403.
    PubMed     Abstract available


  35. AZAR B
    Profile of Haig H. Kazazian Jr.
    Proc Natl Acad Sci U S A. 2020;117:32185-32188.
    PubMed    


  36. CONCILLI M, Petruzzelli R, Parisi S, Catalano F, et al
    Pharmacoproteomics pinpoints HSP70 interaction for correction of the most frequent Wilson disease-causing mutant of ATP7B.
    Proc Natl Acad Sci U S A. 2020;117:32453-32463.
    PubMed     Abstract available


  37. LANDY JA, Oschmann A, Munch SB, Walsh MR, et al
    Ancestral genetic variation in phenotypic plasticity underlies rapid evolutionary changes in resurrected populations of waterfleas.
    Proc Natl Acad Sci U S A. 2020;117:32535-32544.
    PubMed     Abstract available


  38. LI K, Zhang S, Song X, Weyrich A, et al
    Genome evolution of blind subterranean mole rats: Adaptive peripatric versus sympatric speciation.
    Proc Natl Acad Sci U S A. 2020;117:32499-32508.
    PubMed     Abstract available


  39. BORDA V, Alvim I, Mendes M, Silva-Carvalho C, et al
    The genetic structure and adaptation of Andean highlanders and Amazonians are influenced by the interplay between geography and culture.
    Proc Natl Acad Sci U S A. 2020;117:32557-32565.
    PubMed     Abstract available


  40. HELMSTETTER AJ, Bethune K, Kamdem NG, Sonke B, et al
    Individualistic evolutionary responses of Central African rain forest plants to Pleistocene climatic fluctuations.
    Proc Natl Acad Sci U S A. 2020;117:32509-32518.
    PubMed     Abstract available


  41. MARTINSON VG, Gawryluk RMR, Gowen BE, Curtis CI, et al
    Multiple origins of obligate nematode and insect symbionts by a clade of bacteria closely related to plant pathogens.
    Proc Natl Acad Sci U S A. 2020;117:31979-31986.
    PubMed     Abstract available


  42. RAVINDRAN S
    Profile of Se-Jin Lee.
    Proc Natl Acad Sci U S A. 2020;117:30870-30872.
    PubMed    


  43. YANG HC, Chen CH, Wang JH, Liao HC, et al
    Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associations.
    Proc Natl Acad Sci U S A. 2020;117:30679-30686.
    PubMed     Abstract available


  44. AUNINS TR, Erickson KE, Chatterjee A
    Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli.
    Proc Natl Acad Sci U S A. 2020;117:30699-30709.
    PubMed     Abstract available


  45. BISCHOF R, Milleret C, Dupont P, Chipperfield J, et al
    Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring.
    Proc Natl Acad Sci U S A. 2020;117:30531-30538.
    PubMed     Abstract available


    November 2020
  46. ZHANG H, Zoued A, Liu X, Sit B, et al
    Type I interferon remodels lysosome function and modifies intestinal epithelial defense.
    Proc Natl Acad Sci U S A. 2020;117:29862-29871.
    PubMed     Abstract available


  47. CHEN D, Zhang Q, Tang W, Huang Z, et al
    The evolutionary origin and domestication history of goldfish (Carassius auratus).
    Proc Natl Acad Sci U S A. 2020;117:29775-29785.
    PubMed     Abstract available


  48. CLEVES PA, Tinoco AI, Bradford J, Perrin D, et al
    Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.
    Proc Natl Acad Sci U S A. 2020;117:28899-28905.
    PubMed     Abstract available


  49. VIEGAS J
    Profile of Masayori Inouye.
    Proc Natl Acad Sci U S A. 2020;117:28543-28545.
    PubMed    


  50. LEE J, Ha S, Kim M, Kim SW, et al
    Spatial and temporal diversity of glycome expression in mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:28743-28753.
    PubMed     Abstract available


  51. KIM J, Rosenberg NA, Palacios JA
    Distance metrics for ranked evolutionary trees.
    Proc Natl Acad Sci U S A. 2020;117:28876-28886.
    PubMed     Abstract available


  52. EPSTEIN JH, Anthony SJ, Islam A, Kilpatrick AM, et al
    Nipah virus dynamics in bats and implications for spillover to humans.
    Proc Natl Acad Sci U S A. 2020;117:29190-29201.
    PubMed     Abstract available


  53. KOZLENKOV A, Vermunt MW, Apontes P, Li J, et al
    Evolution of regulatory signatures in primate cortical neurons at cell-type resolution.
    Proc Natl Acad Sci U S A. 2020;117:28422-28432.
    PubMed     Abstract available


  54. ROMERO IC, Kong S, Fowlkes CC, Jaramillo C, et al
    Improving the taxonomy of fossil pollen using convolutional neural networks and superresolution microscopy.
    Proc Natl Acad Sci U S A. 2020;117:28496-28505.
    PubMed     Abstract available


  55. STOCKLEY P, Franco C, Claydon AJ, Davidson A, et al
    Revealing mechanisms of mating plug function under sexual selection.
    Proc Natl Acad Sci U S A. 2020;117:27465-27473.
    PubMed     Abstract available


  56. CAO K, Ugarenko M, Ozark PA, Wang J, et al
    DOT1L-controlled cell-fate determination and transcription elongation are independent of H3K79 methylation.
    Proc Natl Acad Sci U S A. 2020;117:27365-27373.
    PubMed     Abstract available


  57. SHIBL AA, Isaac A, Ochsenkuhn MA, Cardenas A, et al
    Diatom modulation of select bacteria through use of two unique secondary metabolites.
    Proc Natl Acad Sci U S A. 2020;117:27445-27455.
    PubMed     Abstract available


  58. SHENG X, Qiu C, Liu H, Gluck C, et al
    Systematic integrated analysis of genetic and epigenetic variation in diabetic kidney disease.
    Proc Natl Acad Sci U S A. 2020 Nov 3. pii: 2005905117.
    PubMed     Abstract available


    October 2020
  59. OIKONOMOU P, Salatino R, Tavazoie S
    In vivo mRNA display enables large-scale proteomics by next generation sequencing.
    Proc Natl Acad Sci U S A. 2020;117:26710-26718.
    PubMed     Abstract available


  60. BUHLMANN P
    Toward causality and improving external validity.
    Proc Natl Acad Sci U S A. 2020;117:25963-25965.
    PubMed    


  61. CARRILLO JD, Faurby S, Silvestro D, Zizka A, et al
    Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
    Proc Natl Acad Sci U S A. 2020;117:26281-26287.
    PubMed     Abstract available


  62. CHEN J, Lu L, Robb SMC, Collin M, et al
    Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.
    Proc Natl Acad Sci U S A. 2020;117:26288-26297.
    PubMed     Abstract available


  63. HAN J, Wang S, Yeung K, Yang D, et al
    Proteome-wide effects of naphthalene-derived secondary organic aerosol in BEAS-2B cells are caused by short-lived unsaturated carbonyls.
    Proc Natl Acad Sci U S A. 2020;117:25386-25395.
    PubMed     Abstract available


  64. HEINDEL DW, Koppolu S, Zhang Y, Kasper B, et al
    Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity.
    Proc Natl Acad Sci U S A. 2020 Oct 12. pii: 2008203117.
    PubMed     Abstract available


  65. RENNER SS
    Bitter gourd from Africa expanded to Southeast Asia and was domesticated there: A new insight from parallel studies.
    Proc Natl Acad Sci U S A. 2020;117:24630-24631.
    PubMed    


  66. MATSUMURA H, Hsiao MC, Lin YP, Toyoda A, et al
    Reply to Renner: Meticulous investigation, not sequencing effort, leads to robust conclusion.
    Proc Natl Acad Sci U S A. 2020;117:24632-24633.
    PubMed    


  67. ANDERSON KM, Collins MA, Kong R, Fang K, et al
    Convergent molecular, cellular, and cortical neuroimaging signatures of major depressive disorder.
    Proc Natl Acad Sci U S A. 2020;117:25138-25149.
    PubMed     Abstract available


  68. NGO D, Wen D, Gao Y, Keyes MJ, et al
    Circulating testican-2 is a podocyte-derived marker of kidney health.
    Proc Natl Acad Sci U S A. 2020;117:25026-25035.
    PubMed     Abstract available


  69. MCWILLIAM HEG, Mak JYW, Awad W, Zorkau M, et al
    Endoplasmic reticulum chaperones stabilize ligand-receptive MR1 molecules for efficient presentation of metabolite antigens.
    Proc Natl Acad Sci U S A. 2020;117:24974-24985.
    PubMed     Abstract available


  70. TUCHOLSKI T, Cai W, Gregorich ZR, Bayne EF, et al
    Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics.
    Proc Natl Acad Sci U S A. 2020;117:24691-24700.
    PubMed     Abstract available


    September 2020
  71. ARISTIZABAL MJ, Anreiter I, Halldorsdottir T, Odgers CL, et al
    Biological embedding of experience: A primer on epigenetics.
    Proc Natl Acad Sci U S A. 2020;117:23261-23269.
    PubMed     Abstract available


  72. MCEWEN LM, O'Donnell KJ, McGill MG, Edgar RD, et al
    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells.
    Proc Natl Acad Sci U S A. 2020;117:23329-23335.
    PubMed     Abstract available


  73. VAN DEN BROECK F, Savill NJ, Imamura H, Sanders M, et al
    Ecological divergence and hybridization of Neotropical Leishmania parasites.
    Proc Natl Acad Sci U S A. 2020 Sep 21. pii: 1920136117.
    PubMed     Abstract available


  74. HECKMANN D, Campeau A, Lloyd CJ, Phaneuf PV, et al
    Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.
    Proc Natl Acad Sci U S A. 2020;117:23182-23190.
    PubMed     Abstract available


  75. ALLEN RS, Gregg CM, Okada S, Menon A, et al
    Plant expression of NifD protein variants resistant to mitochondrial degradation.
    Proc Natl Acad Sci U S A. 2020;117:23165-23173.
    PubMed     Abstract available


  76. BJORKEROTH J, Campbell K, Malina C, Yu R, et al
    Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media.
    Proc Natl Acad Sci U S A. 2020;117:21804-21812.
    PubMed     Abstract available


  77. WAINBERG M, Magis AT, Earls JC, Lovejoy JC, et al
    Multiomic blood correlates of genetic risk identify presymptomatic disease alterations.
    Proc Natl Acad Sci U S A. 2020;117:21813-21820.
    PubMed     Abstract available


  78. CAI W, Huang J, Zhu Q, Li BE, et al
    Enhancer dependence of cell-type-specific gene expression increases with developmental age.
    Proc Natl Acad Sci U S A. 2020;117:21450-21458.
    PubMed     Abstract available


    August 2020
  79. BUFFALO V, Coop G
    Estimating the genome-wide contribution of selection to temporal allele frequency change.
    Proc Natl Acad Sci U S A. 2020;117:20672-20680.
    PubMed     Abstract available


  80. KWESI-MALIEPAARD EM, Aslam MA, Alemdehy MF, van den Brand T, et al
    The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8(+) T cells.
    Proc Natl Acad Sci U S A. 2020;117:20706-20716.
    PubMed     Abstract available


  81. WILLIAMS LM, McCann FE, Cabrita MA, Layton T, et al
    Identifying collagen VI as a target of fibrotic diseases regulated by CREBBP/EP300.
    Proc Natl Acad Sci U S A. 2020;117:20753-20763.
    PubMed     Abstract available


  82. WEBER JA, Park SG, Luria V, Jeon S, et al
    The whale shark genome reveals how genomic and physiological properties scale with body size.
    Proc Natl Acad Sci U S A. 2020;117:20662-20671.
    PubMed     Abstract available


  83. CARBALLAR-LEJARAZU R, Ogaugwu C, Tushar T, Kelsey A, et al
    Next-generation gene drive for population modification of the malaria vector mosquito, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2020 Aug 24. pii: 2010214117.
    PubMed     Abstract available


  84. LA CONO V, Messina E, Rohde M, Arcadi E, et al
    Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides.
    Proc Natl Acad Sci U S A. 2020;117:20223-20234.
    PubMed     Abstract available


  85. AMSTER G, Murphy DA, Milligan WR, Sella G, et al
    Changes in life history and population size can explain the relative neutral diversity levels on X and autosomes in extant human populations.
    Proc Natl Acad Sci U S A. 2020;117:20063-20069.
    PubMed     Abstract available


  86. ABU RAYYAN A, Kamal L, Casadei S, Brownstein Z, et al
    Genomic analysis of inherited hearing loss in the Palestinian population.
    Proc Natl Acad Sci U S A. 2020;117:20070-20076.
    PubMed     Abstract available


  87. PARK A, Oh S, Jung KL, Choi UY, et al
    Global epigenomic analysis of KSHV-infected primary effusion lymphoma identifies functional MYC superenhancers and enhancer RNAs.
    Proc Natl Acad Sci U S A. 2020 Aug 18. pii: 1922216117.
    PubMed     Abstract available


  88. ULHUQ FR, Gomes MC, Duggan GM, Guo M, et al
    A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition.
    Proc Natl Acad Sci U S A. 2020 Aug 7. pii: 2006110117.
    PubMed     Abstract available


  89. SOKOLOWSKI MB
    Honey bee colony aggression and indirect genetic effects.
    Proc Natl Acad Sci U S A. 2020;117:18148-18150.
    PubMed    


    July 2020
  90. PARASKEVOPOULOU S, Pirzer F, Goldmann N, Schmid J, et al
    Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus.
    Proc Natl Acad Sci U S A. 2020;117:17977-17983.
    PubMed     Abstract available


  91. SANDOVAL-CASTILLO J, Gates K, Brauer CJ, Smith S, et al
    Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions.
    Proc Natl Acad Sci U S A. 2020;117:17112-17121.
    PubMed     Abstract available


  92. PEREDO EL, Cardon ZG
    Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae.
    Proc Natl Acad Sci U S A. 2020;117:17438-17445.
    PubMed     Abstract available


  93. HAWCO NJ, McIlvin MM, Bundy RM, Tagliabue A, et al
    Minimal cobalt metabolism in the marine cyanobacterium Prochlorococcus.
    Proc Natl Acad Sci U S A. 2020;117:15740-15747.
    PubMed     Abstract available


  94. HE C, Song W, Weston TA, Tran C, et al
    Peroxidasin-mediated bromine enrichment of basement membranes.
    Proc Natl Acad Sci U S A. 2020;117:15827-15836.
    PubMed     Abstract available


  95. LAY AC, Barrington AF, Hurcombe JA, Ramnath RD, et al
    A role for NPY-NPY2R signaling in albuminuric kidney disease.
    Proc Natl Acad Sci U S A. 2020;117:15862-15873.
    PubMed     Abstract available


    June 2020
  96. RAVINDRAN S
    QnAs with Zachary B. Lippman.
    Proc Natl Acad Sci U S A. 2020;117:14624-14625.
    PubMed    


  97. SU QP, Zhao ZW, Meng L, Ding M, et al
    Superresolution imaging reveals spatiotemporal propagation of human replication foci mediated by CTCF-organized chromatin structures.
    Proc Natl Acad Sci U S A. 2020;117:15036-15046.
    PubMed     Abstract available


  98. VENO MT, Reschke CR, Morris G, Connolly NMC, et al
    A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy.
    Proc Natl Acad Sci U S A. 2020 Jun 24. pii: 1919313117.
    PubMed     Abstract available


  99. ZHANG J, Peters RJ
    Why are momilactones always associated with biosynthetic gene clusters in plants?
    Proc Natl Acad Sci U S A. 2020;117:13867-13869.
    PubMed    


  100. RAVINDRAN S
    Profile of Christopher A. Walsh.
    Proc Natl Acad Sci U S A. 2020;117:13861-13863.
    PubMed    


  101. BOULARD M, Rucli S, Edwards JR, Bestor TH, et al
    Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters.
    Proc Natl Acad Sci U S A. 2020;117:14292-14298.
    PubMed     Abstract available


  102. WU X, Cao B, Aquino P, Chiu TP, et al
    Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria.
    Proc Natl Acad Sci U S A. 2020;117:14322-14330.
    PubMed     Abstract available


  103. HEALTON SE, Pinto HD, Mishra LN, Hamilton GA, et al
    H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction.
    Proc Natl Acad Sci U S A. 2020;117:14251-14258.
    PubMed     Abstract available


  104. KRESS WJ, Mazet JAK, Hebert PDN
    Opinion: Intercepting pandemics through genomics.
    Proc Natl Acad Sci U S A. 2020;117:13852-13855.
    PubMed    


  105. RAUSELL A, Luo Y, Lopez M, Seeleuthner Y, et al
    Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes.
    Proc Natl Acad Sci U S A. 2020;117:13626-13636.
    PubMed     Abstract available


  106. ROACH TNF, Little M, Arts MGI, Huckeba J, et al
    A multiomic analysis of in situ coral-turf algal interactions.
    Proc Natl Acad Sci U S A. 2020;117:13588-13595.
    PubMed     Abstract available


  107. MAHAMKALI V, Valgepea K, de Souza Pinto Lemgruber R, Plan M, et al
    Redox controls metabolic robustness in the gas-fermenting acetogen Clostridium autoethanogenum.
    Proc Natl Acad Sci U S A. 2020;117:13168-13175.
    PubMed     Abstract available


  108. DEGRANDMAISON J, Abdallah K, Blais V, Genier S, et al
    In vivo mapping of a GPCR interactome using knockin mice.
    Proc Natl Acad Sci U S A. 2020;117:13105-13116.
    PubMed     Abstract available


    May 2020
  109. BLATT M, Gusev A, Polyakov Y, Goldwasser S, et al
    Secure large-scale genome-wide association studies using homomorphic encryption.
    Proc Natl Acad Sci U S A. 2020;117:11608-11613.
    PubMed     Abstract available


  110. HUANG J, Khademi M, Fugger L, Lindhe O, et al
    Inflammation-related plasma and CSF biomarkers for multiple sclerosis.
    Proc Natl Acad Sci U S A. 2020 May 26. pii: 1912839117.
    PubMed     Abstract available


  111. PINEDA SS, Chin YK, Undheim EAB, Senff S, et al
    Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.
    Proc Natl Acad Sci U S A. 2020;117:11399-11408.
    PubMed     Abstract available


  112. RATHMANN H, Reyes-Centeno H
    Testing the utility of dental morphological trait combinations for inferring human neutral genetic variation.
    Proc Natl Acad Sci U S A. 2020;117:10769-10777.
    PubMed     Abstract available


  113. MOURKAS E, Taylor AJ, Meric G, Bayliss SC, et al
    Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni.
    Proc Natl Acad Sci U S A. 2020;117:11018-11028.
    PubMed     Abstract available


  114. DE MANUEL M, Barnett R, Sandoval-Velasco M, Yamaguchi N, et al
    The evolutionary history of extinct and living lions.
    Proc Natl Acad Sci U S A. 2020;117:10927-10934.
    PubMed     Abstract available


  115. CHAKRABORTY A, Ruff SE, Dong X, Ellefson ED, et al
    Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres.
    Proc Natl Acad Sci U S A. 2020;117:11029-11037.
    PubMed     Abstract available


  116. LONG JZ
    Proteomics illuminates fat as key tissue in aging.
    Proc Natl Acad Sci U S A. 2020;117:10111-10112.
    PubMed    


  117. PETIT CS, Lee JJ, Boland S, Swarup S, et al
    Inhibition of sphingolipid synthesis improves outcomes and survival in GARP mutant wobbler mice, a model of motor neuron degeneration.
    Proc Natl Acad Sci U S A. 2020;117:10565-10574.
    PubMed     Abstract available


  118. LYNCH M
    The evolutionary scaling of cellular traits imposed by the drift barrier.
    Proc Natl Acad Sci U S A. 2020;117:10435-10444.
    PubMed     Abstract available


  119. DEBOUTTE W, Beller L, Yinda CK, Maes P, et al
    Honey-bee-associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential.
    Proc Natl Acad Sci U S A. 2020;117:10511-10519.
    PubMed     Abstract available


  120. DONIHUE CM, Kowaleski AM, Losos JB, Algar AC, et al
    Hurricane effects on Neotropical lizards span geographic and phylogenetic scales.
    Proc Natl Acad Sci U S A. 2020;117:10429-10434.
    PubMed     Abstract available


  121. MCDERMOTT A
    Inner Workings: Molecular biologists offer "wartime service" in the effort to test for COVID-19.
    Proc Natl Acad Sci U S A. 2020;117:9656-9659.
    PubMed    


  122. CRANE PR, Friis EM
    Water lilies, loss of woodiness, and model systems.
    Proc Natl Acad Sci U S A. 2020;117:9674-9676.
    PubMed    


  123. YU Q, Xiao H, Jedrychowski MP, Schweppe DK, et al
    Sample multiplexing for targeted pathway proteomics in aging mice.
    Proc Natl Acad Sci U S A. 2020;117:9723-9732.
    PubMed     Abstract available


  124. PARDO J, Man Wai C, Chay H, Madden CF, et al
    Intertwined signatures of desiccation and drought tolerance in grasses.
    Proc Natl Acad Sci U S A. 2020;117:10079-10088.
    PubMed     Abstract available


  125. CAMMACK AJ, Moudgil A, Chen J, Vasek MJ, et al
    A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues.
    Proc Natl Acad Sci U S A. 2020;117:10003-10014.
    PubMed     Abstract available


    April 2020
  126. FLYNN JM, Hubley R, Goubert C, Rosen J, et al
    RepeatModeler2 for automated genomic discovery of transposable element families.
    Proc Natl Acad Sci U S A. 2020;117:9451-9457.
    PubMed     Abstract available


  127. LEE S, Hu Y, Loo SK, Tan Y, et al
    Landscape analysis of adjacent gene rearrangements reveals BCL2L14-ETV6 gene fusions in more aggressive triple-negative breast cancer.
    Proc Natl Acad Sci U S A. 2020 Apr 22. pii: 1921333117.
    PubMed     Abstract available


  128. CHERRY TJ, Yang MG, Harmin DA, Tao P, et al
    Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease.
    Proc Natl Acad Sci U S A. 2020;117:9001-9012.
    PubMed     Abstract available


  129. OBERHOFER G, Ivy T, Hay BA
    Gene drive and resilience through renewal with next generation Cleave and Rescue selfish genetic elements.
    Proc Natl Acad Sci U S A. 2020;117:9013-9021.
    PubMed     Abstract available


  130. CAMPBELL K, Westholm J, Kasvandik S, Di Bartolomeo F, et al
    Building blocks are synthesized on demand during the yeast cell cycle.
    Proc Natl Acad Sci U S A. 2020;117:7575-7583.
    PubMed     Abstract available


  131. LEUNG KK, Wilson GM, Kirkemo LL, Riley NM, et al
    Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes.
    Proc Natl Acad Sci U S A. 2020;117:7764-7775.
    PubMed     Abstract available


  132. DAVIS TH
    QnAs with Jens Nielsen.
    Proc Natl Acad Sci U S A. 2020;117:7548-7549.
    PubMed    


  133. YE M, Goudot C, Hoyler T, Lemoine B, et al
    Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers.
    Proc Natl Acad Sci U S A. 2020;117:7905-7916.
    PubMed     Abstract available


  134. YADAV V, Sun S, Coelho MA, Heitman J, et al
    Centromere scission drives chromosome shuffling and reproductive isolation.
    Proc Natl Acad Sci U S A. 2020;117:7917-7928.
    PubMed     Abstract available


    March 2020
  135. OYAS O, Borrell S, Trauner A, Zimmermann M, et al
    Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis.
    Proc Natl Acad Sci U S A. 2020 Mar 30. pii: 1915551117.
    PubMed     Abstract available


  136. ALLEN JP, Ozer EA, Minasov G, Shuvalova L, et al
    A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant.
    Proc Natl Acad Sci U S A. 2020;117:6811-6821.
    PubMed     Abstract available


  137. SLODKOWICZ G, Goldman N
    Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals.
    Proc Natl Acad Sci U S A. 2020;117:5977-5986.
    PubMed     Abstract available


  138. SEIF Y, Choudhary KS, Hefner Y, Anand A, et al
    Metabolic and genetic basis for auxotrophies in Gram-negative species.
    Proc Natl Acad Sci U S A. 2020;117:6264-6273.
    PubMed     Abstract available


  139. LIN Y, Wozniak JM, Grimsey NJ, Girada S, et al
    Phosphoproteomic analysis of protease-activated receptor-1 biased signaling reveals unique modulators of endothelial barrier function.
    Proc Natl Acad Sci U S A. 2020;117:5039-5048.
    PubMed     Abstract available


  140. HARRISON S, Spasojevic MJ, Li D
    Climate and plant community diversity in space and time.
    Proc Natl Acad Sci U S A. 2020;117:4464-4470.
    PubMed     Abstract available


  141. ZHANG Y, Wendte JM, Ji L, Schmitz RJ, et al
    Natural variation in DNA methylation homeostasis and the emergence of epialleles.
    Proc Natl Acad Sci U S A. 2020;117:4874-4884.
    PubMed     Abstract available


  142. ZHANG X, Hong D, Ma S, Ward T, et al
    Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage.
    Proc Natl Acad Sci U S A. 2020;117:4864-4873.
    PubMed     Abstract available


  143. KESAVAN R, Fromel T, Zukunft S, Laban H, et al
    Cyp2c44 regulates prostaglandin synthesis, lymphangiogenesis, and metastasis in a mouse model of breast cancer.
    Proc Natl Acad Sci U S A. 2020 Mar 2. pii: 1921381117.
    PubMed     Abstract available


  144. YANG Q, Zhao X, Lemey P, Suchard MA, et al
    Assessing the role of live poultry trade in community-structured transmission of avian influenza in China.
    Proc Natl Acad Sci U S A. 2020 Mar 2. pii: 1906954117.
    PubMed     Abstract available


    February 2020
  145. BELLIS ES, Kelly EA, Lorts CM, Gao H, et al
    Genomics of sorghum local adaptation to a parasitic plant.
    Proc Natl Acad Sci U S A. 2020;117:4243-4251.
    PubMed     Abstract available


  146. FEDOROV VB, Trucchi E, Goropashnaya AV, Waltari E, et al
    Impact of past climate warming on genomic diversity and demographic history of collared lemmings across the Eurasian Arctic.
    Proc Natl Acad Sci U S A. 2020;117:3026-3033.
    PubMed     Abstract available


  147. GRAHAM G, Csicsery N, Stasiowski E, Thouvenin G, et al
    Genome-scale transcriptional dynamics and environmental biosensing.
    Proc Natl Acad Sci U S A. 2020;117:3301-3306.
    PubMed     Abstract available


  148. MCDERMOTT A
    Inner Workings: A microscopic mystery at the heart of mass-coral bleaching.
    Proc Natl Acad Sci U S A. 2020;117:2232-2235.
    PubMed    


  149. CASTRO E SILVA MA, Nunes K, Lemes RB, Mas-Sandoval A, et al
    Genomic insight into the origins and dispersal of the Brazilian coastal natives.
    Proc Natl Acad Sci U S A. 2020;117:2372-2377.
    PubMed     Abstract available


  150. KESSLER MD, Loesch DP, Perry JA, Heard-Costa NL, et al
    De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population.
    Proc Natl Acad Sci U S A. 2020;117:2560-2569.
    PubMed     Abstract available


    January 2020
  151. SURAN M
    Finding the tail end: The discovery of RNA splicing.
    Proc Natl Acad Sci U S A. 2020;117:1829-1832.
    PubMed    


  152. MILLER AC, Comellas AP, Hornick DB, Stoltz DA, et al
    Cystic fibrosis carriers are at increased risk for a wide range of cystic fibrosis-related conditions.
    Proc Natl Acad Sci U S A. 2020;117:1621-1627.
    PubMed     Abstract available


  153. ROWAN J, Beaudrot L, Franklin J, Reed KE, et al
    Geographically divergent evolutionary and ecological legacies shape mammal biodiversity in the global tropics and subtropics.
    Proc Natl Acad Sci U S A. 2020;117:1559-1565.
    PubMed     Abstract available


  154. SOKOLOWSKI MB
    Functional testing of ASD-associated genes.
    Proc Natl Acad Sci U S A. 2020;117:26-28.
    PubMed    


  155. NIETZEL T, Mostertz J, Ruberti C, Nee G, et al
    Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination.
    Proc Natl Acad Sci U S A. 2020;117:741-751.
    PubMed     Abstract available


  156. MCDIARMID TA, Belmadani M, Liang J, Meili F, et al
    Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.
    Proc Natl Acad Sci U S A. 2020;117:656-667.
    PubMed     Abstract available


  157. MERWIN NJ, Mousa WK, Dejong CA, Skinnider MA, et al
    DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products.
    Proc Natl Acad Sci U S A. 2020;117:371-380.
    PubMed     Abstract available


    December 2019
  158. ADOLFI A, Poulton B, Anthousi A, Macilwee S, et al
    Functional genetic validation of key genes conferring insecticide resistance in the major African malaria vector, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2019 Dec 4. pii: 1914633116.
    PubMed     Abstract available


  159. YILDIRIM F, Ng CW, Kappes V, Ehrenberger T, et al
    Early epigenomic and transcriptional changes reveal Elk-1 transcription factor as a therapeutic target in Huntington's disease.
    Proc Natl Acad Sci U S A. 2019;116:24840-24851.
    PubMed     Abstract available


    November 2019
  160. QIAN H, Deng T, Jin Y, Mao L, et al
    Phylogenetic dispersion and diversity in regional assemblages of seed plants in China.
    Proc Natl Acad Sci U S A. 2019;116:23192-23201.
    PubMed     Abstract available


    October 2019
  161. BROWN TS, Challagundla L, Baugh EH, Omar SV, et al
    Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa.
    Proc Natl Acad Sci U S A. 2019 Oct 28. pii: 1906636116.
    PubMed     Abstract available


  162. COX SL, Ruff CB, Maier RM, Mathieson I, et al
    Genetic contributions to variation in human stature in prehistoric Europe.
    Proc Natl Acad Sci U S A. 2019;116:21484-21492.
    PubMed     Abstract available


  163. LI G, Eckert MA, Chang JW, Montgomery JE, et al
    Ultrasensitive, multiplexed chemoproteomic profiling with soluble activity-dependent proximity ligation.
    Proc Natl Acad Sci U S A. 2019;116:21493-21500.
    PubMed     Abstract available


  164. MARCOVITZ A, Turakhia Y, Chen HI, Gloudemans M, et al
    A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales.
    Proc Natl Acad Sci U S A. 2019;116:21094-21103.
    PubMed     Abstract available


  165. MUNDERLOH UG
    The beginning of an era of functional genomics in Rickettsiology is steeped in history.
    Proc Natl Acad Sci U S A. 2019;116:20252-20253.
    PubMed    


  166. NEEDHAM DM, Yoshizawa S, Hosaka T, Poirier C, et al
    A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.
    Proc Natl Acad Sci U S A. 2019;116:20574-20583.
    PubMed     Abstract available


  167. RUDMAN SM, Greenblum S, Hughes RC, Rajpurohit S, et al
    Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2019;116:20025-20032.
    PubMed     Abstract available


  168. RYAN SF, Lombaert E, Espeset A, Vila R, et al
    Global invasion history of the agricultural pest butterfly Pieris rapae revealed with genomics and citizen science.
    Proc Natl Acad Sci U S A. 2019;116:20015-20024.
    PubMed     Abstract available


    September 2019
  169. GEBER J, Tromp M, Scott A, Bouwman A, et al
    Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine.
    Proc Natl Acad Sci U S A. 2019;116:19380-19385.
    PubMed     Abstract available


  170. LIU K, Theusch E, Zhou Y, Ashuach T, et al
    GeneFishing to reconstruct context specific portraits of biological processes.
    Proc Natl Acad Sci U S A. 2019;116:18943-18950.
    PubMed     Abstract available


  171. KUMAR S, Clarke D, Gerstein MB
    Leveraging protein dynamics to identify cancer mutational hotspots using 3D structures.
    Proc Natl Acad Sci U S A. 2019;116:18962-18970.
    PubMed     Abstract available


  172. TOEWS DPL, Taylor SA, Streby HM, Kramer GR, et al
    Selection on VPS13A linked to migration in a songbird.
    Proc Natl Acad Sci U S A. 2019;116:18272-18274.
    PubMed     Abstract available


  173. TIAN C, Clauser KR, Ohlund D, Rickelt S, et al
    Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells.
    Proc Natl Acad Sci U S A. 2019 Sep 4. pii: 1908626116.
    PubMed     Abstract available


  174. HOPKINS BR, Sepil I, Thezenas ML, Craig JF, et al
    Divergent allocation of sperm and the seminal proteome along a competition gradient in Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2019;116:17925-17933.
    PubMed     Abstract available


  175. FRAZAO N, Sousa A, Lassig M, Gordo I, et al
    Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut.
    Proc Natl Acad Sci U S A. 2019;116:17906-17915.
    PubMed     Abstract available


    August 2019
  176. SHEN Y, Grisdale CJ, Islam SA, Bose P, et al
    Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments.
    Proc Natl Acad Sci U S A. 2019 Aug 30. pii: 1813495116.
    PubMed     Abstract available


  177. KREMER D, Perron H, Kury P
    Reply to Ruprecht and Mayer: Unearthing genomic fossils in the pathogenesis of multiple sclerosis.
    Proc Natl Acad Sci U S A. 2019 Aug 27. pii: 1912315116.
    PubMed    


  178. PERSI E, Prandi D, Wolf YI, Pozniak Y, et al
    Proteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues.
    Proc Natl Acad Sci U S A. 2019;116:16987-16996.
    PubMed     Abstract available


  179. STEINRUCKEN M, Kamm J, Spence JP, Song YS, et al
    Inference of complex population histories using whole-genome sequences from multiple populations.
    Proc Natl Acad Sci U S A. 2019;116:17115-17120.
    PubMed     Abstract available


  180. SOTOUDEH R, Harris KM, Conley D
    Effects of the peer metagenomic environment on smoking behavior.
    Proc Natl Acad Sci U S A. 2019;116:16302-16307.
    PubMed     Abstract available


  181. ARCHIBALD JM
    Genomics reveals alga-associated cyanobacteria hiding in plain sight.
    Proc Natl Acad Sci U S A. 2019;116:15757-15759.
    PubMed    


  182. AZAR B
    QnAs with David Reich.
    Proc Natl Acad Sci U S A. 2019;116:15752-15753.
    PubMed    


  183. NAKAYAMA T, Nomura M, Takano Y, Tanifuji G, et al
    Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host.
    Proc Natl Acad Sci U S A. 2019;116:15973-15978.
    PubMed     Abstract available


    July 2019
  184. OUYANG W, Han J
    Universal amplification-free molecular diagnostics by billion-fold hierarchical nanofluidic concentration.
    Proc Natl Acad Sci U S A. 2019 Jul 29. pii: 1904513116.
    PubMed     Abstract available


  185. GREENLON A, Chang PL, Damtew ZM, Muleta A, et al
    Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.
    Proc Natl Acad Sci U S A. 2019;116:15200-15209.
    PubMed     Abstract available


  186. DARNET S, Dragalzew AC, Amaral DB, Sousa JF, et al
    Deep evolutionary origin of limb and fin regeneration.
    Proc Natl Acad Sci U S A. 2019;116:15106-15115.
    PubMed     Abstract available


  187. HAMM JN, Erdmann S, Eloe-Fadrosh EA, Angeloni A, et al
    Unexpected host dependency of Antarctic Nanohaloarchaeota.
    Proc Natl Acad Sci U S A. 2019;116:14661-14670.
    PubMed     Abstract available


  188. CALLIER V
    Core Concept: Gene transfers from bacteria and viruses may be shaping complex organisms.
    Proc Natl Acad Sci U S A. 2019;116:13714-13716.
    PubMed    


  189. LOBKOVSKY AE, Levi L, Wolf YI, Maiers M, et al
    Multiplicative fitness, rapid haplotype discovery, and fitness decay explain evolution of human MHC.
    Proc Natl Acad Sci U S A. 2019;116:14098-14104.
    PubMed     Abstract available


  190. RINKER DC, Specian NK, Zhao S, Gibbons JG, et al
    Polar bear evolution is marked by rapid changes in gene copy number in response to dietary shift.
    Proc Natl Acad Sci U S A. 2019;116:13446-13451.
    PubMed     Abstract available


    June 2019
  191. CACERES PS, Gravotta D, Zager PJ, Dephoure N, et al
    Quantitative proteomics of MDCK cells identify unrecognized roles of clathrin adaptor AP-1 in polarized distribution of surface proteins.
    Proc Natl Acad Sci U S A. 2019;116:11796-11805.
    PubMed     Abstract available


  192. LEWIS VM, Saunders LM, Larson TA, Bain EJ, et al
    Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores.
    Proc Natl Acad Sci U S A. 2019;116:11806-11811.
    PubMed     Abstract available


  193. XU L, Stige LC, Leirs H, Neerinckx S, et al
    Historical and genomic data reveal the influencing factors on global transmission velocity of plague during the Third Pandemic.
    Proc Natl Acad Sci U S A. 2019;116:11833-11838.
    PubMed     Abstract available


  194. KANG L, Rashkovetsky E, Michalak K, Garner HR, et al
    Genomic divergence and adaptive convergence in Drosophila simulans from Evolution Canyon, Israel.
    Proc Natl Acad Sci U S A. 2019;116:11839-11844.
    PubMed     Abstract available


  195. TORGASHEVA AA, Malinovskaya LP, Zadesenets KS, Karamysheva TV, et al
    Germline-restricted chromosome (GRC) is widespread among songbirds.
    Proc Natl Acad Sci U S A. 2019;116:11845-11850.
    PubMed     Abstract available


  196. TAKASHI Y, Kosako H, Sawatsubashi S, Kinoshita Y, et al
    Activation of unliganded FGF receptor by extracellular phosphate potentiates proteolytic protection of FGF23 by its O-glycosylation.
    Proc Natl Acad Sci U S A. 2019;116:11418-11427.
    PubMed     Abstract available


    May 2019
  197. MA X, Huang J
    Predicting clinical outcome of therapy-resistant prostate cancer.
    Proc Natl Acad Sci U S A. 2019 May 21. pii: 1906812116.
    PubMed    


  198. BRIGHAM BS, Kitzrow JP, Reyes JC, Musier-Forsyth K, et al
    Intrinsic conformational dynamics of the HIV-1 genomic RNA 5'UTR.
    Proc Natl Acad Sci U S A. 2019 May 8. pii: 1902271116.
    PubMed     Abstract available


  199. REYNOLDS AW, Mata-Miguez J, Miro-Herrans A, Briggs-Cloud M, et al
    Comparing signals of natural selection between three Indigenous North American populations.
    Proc Natl Acad Sci U S A. 2019;116:9312-9317.
    PubMed     Abstract available


  200. ABIDA W, Cyrta J, Heller G, Prandi D, et al
    Genomic correlates of clinical outcome in advanced prostate cancer.
    Proc Natl Acad Sci U S A. 2019 May 6. pii: 1902651116.
    PubMed     Abstract available


    April 2019
  201. DOLGIN E
    Inner Workings: Genomics blazes a trail to improved cannabis cultivation.
    Proc Natl Acad Sci U S A. 2019;116:8638-8640.
    PubMed    


  202. MIRANDA A, Hamilton PT, Zhang AW, Pattnaik S, et al
    Cancer stemness, intratumoral heterogeneity, and immune response across cancers.
    Proc Natl Acad Sci U S A. 2019;116:9020-9029.
    PubMed     Abstract available


  203. AMINI S, Tadayon M, Loke JJ, Kumar A, et al
    A diecast mineralization process forms the tough mantis shrimp dactyl club.
    Proc Natl Acad Sci U S A. 2019;116:8685-8692.
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  204. PALACIOS-FLORES K, Castillo A, Uribe C, Garcia Sotelo J, et al
    Prediction and identification of recurrent genomic rearrangements that generate chimeric chromosomes in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 2019;116:8445-8450.
    PubMed     Abstract available


  205. BEMMELS JB, Knowles LL, Dick CW
    Genomic evidence of survival near ice sheet margins for some, but not all, North American trees.
    Proc Natl Acad Sci U S A. 2019;116:8431-8436.
    PubMed     Abstract available


  206. KOTELNIKOVA E, Kiani NA, Messinis D, Pertsovskaya I, et al
    MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis.
    Proc Natl Acad Sci U S A. 2019 Apr 19. pii: 1818347116.
    PubMed     Abstract available


  207. VENETZ JE, Del Medico L, Wolfle A, Schachle P, et al
    Chemical synthesis rewriting of a bacterial genome to achieve design flexibility and biological functionality.
    Proc Natl Acad Sci U S A. 2019;116:8070-8079.
    PubMed     Abstract available


    March 2019
  208. NICAISE AM, Wagstaff LJ, Willis CM, Paisie C, et al
    Cellular senescence in progenitor cells contributes to diminished remyelination potential in progressive multiple sclerosis.
    Proc Natl Acad Sci U S A. 2019 Mar 25. pii: 1818348116.
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  209. ZHOU J, Li Y
    SNPs deciding the rapid growth of cyanobacteria are alterable.
    Proc Natl Acad Sci U S A. 2019;116:3945.
    PubMed    


  210. UNGERER J, Wendt KE, Hendry JI, Maranas CD, et al
    Reply to Zhou and Li: Plasticity of the genomic haplotype of Synechococcus elongatus leads to rapid strain adaptation under laboratory conditions.
    Proc Natl Acad Sci U S A. 2019;116:3946-3947.
    PubMed    


  211. SHERIDAN MA, Yang Y, Jain A, Lyons AS, et al
    Early onset preeclampsia in a model for human placental trophoblast.
    Proc Natl Acad Sci U S A. 2019;116:4336-4345.
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  212. KUNOVA BOSAKOVA M, Nita A, Gregor T, Varecha M, et al
    Fibroblast growth factor receptor influences primary cilium length through an interaction with intestinal cell kinase.
    Proc Natl Acad Sci U S A. 2019;116:4316-4325.
    PubMed     Abstract available


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