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Articles published in Proc Natl Acad Sci U S A

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Single Articles


    December 2025
  1. JANET-MAITRE M, Di Venanzio G, Jackson-Litteken CD, Scott NE, et al
    Intracellular Acinetobacter baumannii acts as a transient reservoir in lung infection via a "persist and resist" strategy.
    Proc Natl Acad Sci U S A. 2025;122:e2511369122.
    PubMed     Abstract available


  2. XIANG R, Breen E, Bolormaa S, Liu Z, et al
    Integrating extensive functional annotations and multiomics of cattle enhances climate resilience prediction and mapping.
    Proc Natl Acad Sci U S A. 2025;122:e2514736122.
    PubMed     Abstract available


  3. DENG Y, DeWitt WS, Song YS, Nielsen R, et al
    A general framework for branch length estimation in Ancestral Recombination Graphs.
    Proc Natl Acad Sci U S A. 2025;122:e2504461122.
    PubMed     Abstract available


  4. DEVADHASAN A, Carja O
    Local negative frequency dependence can decrease global coexistence in fragmented populations.
    Proc Natl Acad Sci U S A. 2025;122:e2513857122.
    PubMed     Abstract available


  5. PARASKEVAIDI M, Raglan O, McKenzie J, Xiang Y, et al
    Lipidomic profiling of endometrial cancer using desorption electrospray ionization mass spectrometry imaging.
    Proc Natl Acad Sci U S A. 2025;122:e2522839122.
    PubMed     Abstract available


    November 2025
  6. KOLBE JJ, Giery ST, Petherick AS, Losos JB, et al
    Morphological and genomic responses to hurricanes arise and persist during a biological invasion.
    Proc Natl Acad Sci U S A. 2025;122:e2517322122.
    PubMed     Abstract available


  7. PASCHOU C, Apokotou O, Charmpi K, Kollias A, et al
    Dysregulated proteostasis in p.A53T-alpha-Synuclein astrocytes aggravates Lewy-like neuropathology in a Parkinson's disease iPSC model.
    Proc Natl Acad Sci U S A. 2025;122:e2505240122.
    PubMed     Abstract available


  8. MERRION HG, Barber CN, Renuse S, Cutler J, et al
    Dynamic extracellular interactions with AMPA receptors.
    Proc Natl Acad Sci U S A. 2025;122:e2517436122.
    PubMed     Abstract available


  9. GOLDEN SS, DeRosier DJ, Dahlberg JE, Sherman LA, et al
    Robert Haselkorn (1934-2025): Pioneer in molecular biology and microbiology.
    Proc Natl Acad Sci U S A. 2025;122:e2522224122.
    PubMed     Abstract available


  10. MATSUMOTO C, Takahashi KK, Iwatsuki M, Yasuda-Yoshihara N, et al
    Genomic and transcriptomic landscape of carcinogenesis in patients with gastric adenocarcinoma and proximal polyposis of the stomach (GAPPS).
    Proc Natl Acad Sci U S A. 2025;122:e2427133122.
    PubMed     Abstract available


    October 2025
  11. HATFULL GF
    All the world's a phage.
    Proc Natl Acad Sci U S A. 2025;122:e2523344122.
    PubMed     Abstract available


  12. TESNIERE C, Boudghene-Stambouli F, Severin M, Poet M, et al
    Intracellular pH regulates ubiquitin-mediated degradation of the MAP kinase ERK3.
    Proc Natl Acad Sci U S A. 2025;122:e2501825122.
    PubMed     Abstract available


  13. SCHWEIZER RM, Grummer JA, Tobin KB, Corpuz R, et al
    Museum genomics suggests long-term population decline in a putatively extinct bumble bee.
    Proc Natl Acad Sci U S A. 2025;122:e2509749122.
    PubMed     Abstract available


  14. JANG E, Ghaffari S, Henry A, Wen G, et al
    Lipid raft proteomics identify endothelial myosin-9 (MYH9) as a regulator of low-density lipoprotein transcytosis and atherosclerosis.
    Proc Natl Acad Sci U S A. 2025;122:e2509315122.
    PubMed     Abstract available


  15. PIERCE MP, Worthington BM, Han S, Ni XB, et al
    Phylogenomics redefines the evolutionary history of mosquitoes.
    Proc Natl Acad Sci U S A. 2025;122:e2519291122.
    PubMed     Abstract available


  16. PENG Z, Fan J, Liu Y, Jia Q, et al
    Uncovering cargo clients and accessory factors of AP-1 and AP-4 through vesicle proteomics.
    Proc Natl Acad Sci U S A. 2025;122:e2508961122.
    PubMed     Abstract available


    September 2025
  17. LANGLOIS RA, Casanova JL
    The potential impacts of human genetics on virus emergence.
    Proc Natl Acad Sci U S A. 2025;122:e2504318122.
    PubMed     Abstract available


  18. PELOSI JA, Davenport R, Kuo LY, Gray LN, et al
    The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant.
    Proc Natl Acad Sci U S A. 2025;122:e2504773122.
    PubMed     Abstract available


  19. SNOW M, Searcy MT, Summers R, Blohm T, et al
    A reanalysis of population dynamics in the Casas Grandes region of Northern Mexico using mitochondrial DNA.
    Proc Natl Acad Sci U S A. 2025;122:e2506162122.
    PubMed     Abstract available


  20. BENTLEY K, Statkute E, Murrell I, Fielding CA, et al
    Virion proteomics of genetically intact HCMV reveals a regulator of envelope glycoprotein composition that protects against humoral immunity.
    Proc Natl Acad Sci U S A. 2025;122:e2425622122.
    PubMed     Abstract available


    August 2025
  21. XIE T, Lin D, Cai XD, Ma LJ, et al
    Nano-biochar regulates phage-host interactions, reducing antibiotic resistance genes in vermicomposting systems.
    Proc Natl Acad Sci U S A. 2025;122:e2511986122.
    PubMed     Abstract available


  22. IZQUIERDO-ARANEGA G, Cuevas-Caballe C, Giannelli F, Paris JR, et al
    Pervasive and recurrent hybridization prevents inbreeding in Europe's most threatened seabird.
    Proc Natl Acad Sci U S A. 2025;122:e2427223122.
    PubMed     Abstract available


  23. GUJRAL O, Bafna M, Alm E, Berger B, et al
    Sparse autoencoders uncover biologically interpretable features in protein language model representations.
    Proc Natl Acad Sci U S A. 2025;122:e2506316122.
    PubMed     Abstract available


  24. LYU L, Gill M, Stott G, Subedi S, et al
    Tracing SARS-CoV-2 clusters across local scales using genomic data.
    Proc Natl Acad Sci U S A. 2025;122:e2501435122.
    PubMed     Abstract available


  25. ZHOU N, Zhang Y, Chen PR, Fan X, et al
    Time-resolved photocatalytic proximity labeling uncovers ER proteome dynamics underlying UPR-to-apoptosis transition.
    Proc Natl Acad Sci U S A. 2025;122:e2503115122.
    PubMed     Abstract available


  26. WANG H, Nielsen J, Zhou YJ, Lu H, et al
    Yeast adapts to diverse ecological niches driven by genomics and metabolic reprogramming.
    Proc Natl Acad Sci U S A. 2025;122:e2502044122.
    PubMed     Abstract available


  27. LASO-JADART R, Corrigan SL, Yang L, Lee SH, et al
    A genomic test of sex-biased dispersal in white sharks.
    Proc Natl Acad Sci U S A. 2025;122:e2507931122.
    PubMed     Abstract available


  28. VAN DER HEIJDEN ESM, Nasvall K, Seixas FA, Beserra Nobre CE, et al
    Genomics of Neotropical biodiversity indicators: Two butterfly radiations with rampant chromosomal rearrangements and hybridization.
    Proc Natl Acad Sci U S A. 2025;122:e2410939122.
    PubMed     Abstract available


  29. LEWANSKI AL, Linderoth T, Thompson G, Tringali A, et al
    Translocations contribute to population rescue in an imperiled woodpecker.
    Proc Natl Acad Sci U S A. 2025;122:e2410946122.
    PubMed     Abstract available


  30. MUIRHEAD CA, Marti E, Shogren EH, Uy JAC, et al
    Genomic origins and evolution of neo-sex chromosomes in Pacific Island birds.
    Proc Natl Acad Sci U S A. 2025;122:e2503746122.
    PubMed     Abstract available


    July 2025
  31. LIU Y, Sarker AHMR, Sripa B, Tangkawattana S, et al
    A population genetic analysis of the nematode Strongyloides stercoralis in Asia shows that human infection is not a zoonosis from dogs.
    Proc Natl Acad Sci U S A. 2025;122:e2424630122.
    PubMed     Abstract available


  32. PEHIM LIMBU S, Sturmer SL, Zahn G, Aguilar-Trigueros CA, et al
    Climate-linked biogeography of mycorrhizal fungal spore traits.
    Proc Natl Acad Sci U S A. 2025;122:e2505059122.
    PubMed     Abstract available


  33. VASUDEVAN HN, Arang N, Sacconi Nunez M, Kennedy P, et al
    A transcriptomic, proteomic, and functional genetic atlas dissects neurofibromin function in the peripheral nervous system.
    Proc Natl Acad Sci U S A. 2025;122:e2506823122.
    PubMed     Abstract available


  34. JIANG Y, Liu Q, Stridh P, Kockum I, et al
    Multiomics integration prioritizes potential drug targets for multiple sclerosis.
    Proc Natl Acad Sci U S A. 2025;122:e2425537122.
    PubMed     Abstract available


  35. DELLICOUR S, Gambaro F, Jacquot M, Lequime S, et al
    Comparative performance of viral landscape phylogeography approaches.
    Proc Natl Acad Sci U S A. 2025;122:e2506743122.
    PubMed     Abstract available


  36. SLAVOV GT, Macaya-Sanz D, DiFazio SP, Howe GT, et al
    Population structure limits the use of genomic data for predicting phenotypes and managing genetic resources in forest trees.
    Proc Natl Acad Sci U S A. 2025;122:e2425691122.
    PubMed     Abstract available


  37. ANINTA SG, Drinkwater R, Carmagnini A, Deere NJ, et al
    The importance of small-island populations for the long-term survival of endangered large-bodied insular mammals.
    Proc Natl Acad Sci U S A. 2025;122:e2422690122.
    PubMed     Abstract available


    June 2025
  38. ZENG W, Guo H, Liu Q, Wong WH, et al
    Improving polygenic prediction from whole-genome sequencing data by leveraging predicted epigenomic features.
    Proc Natl Acad Sci U S A. 2025;122:e2419202122.
    PubMed     Abstract available


  39. GORELIK A, Paulo JA, Schroeter CB, Lad M, et al
    CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity.
    Proc Natl Acad Sci U S A. 2025;122:e2424985122.
    PubMed     Abstract available


  40. KUO CL, Liu P, Drouard G, Vuoksimaa E, et al
    A proteomic signature of healthspan.
    Proc Natl Acad Sci U S A. 2025;122:e2414086122.
    PubMed     Abstract available


  41. STEINER MC, Rice DP, Biddanda A, Ianni-Ravn MK, et al
    Study design and the sampling of deleterious rare variants in biobank-scale datasets.
    Proc Natl Acad Sci U S A. 2025;122:e2425196122.
    PubMed     Abstract available


  42. ALVERSON AJ, Roberts WR, Ruck EC, Nakov T, et al
    Phylogenomics reveals the slow-burning fuse of diatom evolution.
    Proc Natl Acad Sci U S A. 2025;122:e2500153122.
    PubMed     Abstract available


    May 2025
  43. YAMASHITA H, Matsumoto T, Kawashima K, Abdulla Daanaa HS, et al
    Dinucleotide preferences underlie apparent codon preference reversals in the Drosophila melanogaster lineage.
    Proc Natl Acad Sci U S A. 2025;122:e2419696122.
    PubMed     Abstract available


  44. MARTIS S, Schwab DJ, GrandPre T
    Trait-space patterning is dictated by the tempo and mode of mutation.
    Proc Natl Acad Sci U S A. 2025;122:e2425607122.
    PubMed     Abstract available


  45. GUSTAVSON DE, Borriello GA, Karhadkar MA, Rhee SH, et al
    Stability of general cognitive ability from infancy to adulthood: A combined twin and genomic investigation.
    Proc Natl Acad Sci U S A. 2025;122:e2426531122.
    PubMed     Abstract available


  46. PEEK J, Bhattacharjee A, Burian J, Hsieh DC, et al
    Environmental resistome-guided development of resistance-tolerant antibiotics.
    Proc Natl Acad Sci U S A. 2025;122:e2504781122.
    PubMed     Abstract available


  47. FRITTS RK, Ebmeier CC, Copley SD
    Transcriptomic and proteomic ramifications of segmental amplification in Escherichia coli.
    Proc Natl Acad Sci U S A. 2025;122:e2422424122.
    PubMed     Abstract available


  48. GUPTA A, Mirarab S, Turakhia Y
    Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES.
    Proc Natl Acad Sci U S A. 2025;122:e2500553122.
    PubMed     Abstract available


  49. JO Y, Greene TT, Chiale C, Zhang K, et al
    Genomic analysis of progenitors in viral infection implicates glucocorticoids as suppressors of plasmacytoid dendritic cell generation.
    Proc Natl Acad Sci U S A. 2025;122:e2410092122.
    PubMed     Abstract available


    April 2025
  50. ROSENTHAL JS, Zhang D, Yin J, Long C, et al
    Molecular organization of central cholinergic synapses.
    Proc Natl Acad Sci U S A. 2025;122:e2422173122.
    PubMed     Abstract available


  51. MCDONALD EF, Kim M, Olson JA 3rd, Meiler J, et al
    Proteostasis landscapes of cystic fibrosis variants reveal drug response vulnerability.
    Proc Natl Acad Sci U S A. 2025;122:e2418407122.
    PubMed     Abstract available


  52. HUANG YH, Belk JA, Zhang R, Weiser NE, et al
    Unified molecular approach for spatial epigenome, transcriptome, and cell lineages.
    Proc Natl Acad Sci U S A. 2025;122:e2424070122.
    PubMed     Abstract available


  53. ZHAO X, Liu Y, Yuan B, Cao Z, et al
    Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps.
    Proc Natl Acad Sci U S A. 2025;122:e2422292122.
    PubMed     Abstract available


  54. SIERANT MC, Jin SC, Bilguvar K, Morton SU, et al
    Genomic analysis of 11,555 probands identifies 60 dominant congenital heart disease genes.
    Proc Natl Acad Sci U S A. 2025;122:e2420343122.
    PubMed     Abstract available


    March 2025
  55. BLUMSTEIN M, Webster S, Hopkins R, Basler D, et al
    Genomics highlight an underestimation of phenology sensitivity to the urban heat island effect.
    Proc Natl Acad Sci U S A. 2025;122:e2408564122.
    PubMed     Abstract available


  56. HU Z, Baer A, Hering L, de Sena Oliveira I, et al
    Conserved leucine-rich repeat proteins in the adhesive projectile slime of velvet worms.
    Proc Natl Acad Sci U S A. 2025;122:e2416282122.
    PubMed     Abstract available


  57. ERVEN JAM, Mattiangeli V, Dreshaj M, Mullin VE, et al
    Archaeogenomic insights into commensalism and regional variation in pig management in Neolithic northwest Europe.
    Proc Natl Acad Sci U S A. 2025;122:e2410235122.
    PubMed     Abstract available


  58. HART R, Moran NA, Ochman H
    Genomic divergence across the tree of life.
    Proc Natl Acad Sci U S A. 2025;122:e2319389122.
    PubMed     Abstract available


  59. DICKMANDER RJ, Lenarcic EM, Sears JD, Hale AE, et al
    RNA-targeted proteomics identifies YBX1 as critical for efficient HCMV mRNA translation.
    Proc Natl Acad Sci U S A. 2025;122:e2421155122.
    PubMed     Abstract available


    February 2025
  60. PENG Y, Wang Y, Liu Y, Fang X, et al
    The genomic and epigenomic landscapes of hemizygous genes across crops with contrasting reproductive systems.
    Proc Natl Acad Sci U S A. 2025;122:e2422487122.
    PubMed     Abstract available


    January 2025
  61. NI B, Xiao L, Lin D, Zhang TL, et al
    Increasing pesticide diversity impairs soil microbial functions.
    Proc Natl Acad Sci U S A. 2025;122:e2419917122.
    PubMed     Abstract available


    December 2024
  62. RUPERTI F, Dzieciatkowska M, Pankey MS, Asensio CS, et al
    Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals.
    Proc Natl Acad Sci U S A. 2024;121:e2409125121.
    PubMed     Abstract available


  63. PURNOMO GA, Kealy S, O'Connor S, Schapper A, et al
    The genetic origins and impacts of historical Papuan migrations into Wallacea.
    Proc Natl Acad Sci U S A. 2024;121:e2412355121.
    PubMed     Abstract available


  64. SRINIVAS P, Peterson SB, Gallagher LA, Wang Y, et al
    Beyond genomics in Patescibacteria: A trove of unexplored biology packed into ultrasmall bacteria.
    Proc Natl Acad Sci U S A. 2024;121:e2419369121.
    PubMed     Abstract available


  65. PRADA F, Haramaty L, Livnah O, Shaul R, et al
    Proteomic characterization of a foraminiferal test's organic matrix.
    Proc Natl Acad Sci U S A. 2024;121:e2417845121.
    PubMed     Abstract available


  66. PADHI C, Field CM, Forneris CC, Olszewski D, et al
    Metagenomic study of lake microbial mats reveals protease-inhibiting antiviral peptides from a core microbiome member.
    Proc Natl Acad Sci U S A. 2024;121:e2409026121.
    PubMed     Abstract available


    November 2024
  67. WAKANO JY, Aoki K
    Forward and backward modeling of cultural evolutionary processes.
    Proc Natl Acad Sci U S A. 2024;121:e2322880121.
    PubMed     Abstract available


  68. STONE L, Lurquin PF
    A tale of two cultures: How L. Luca Cavalli-Sforza bridged the gap between science and the humanities.
    Proc Natl Acad Sci U S A. 2024;121:e2322878121.
    PubMed     Abstract available


  69. ARMSTRONG CG, Clemente-Carvalho RBG, Turner NJ, Wickham S, et al
    Genetic differentiation and precolonial Indigenous cultivation of hazelnut (Corylus cornuta, Betulaceae) in Western North America.
    Proc Natl Acad Sci U S A. 2024;121:e2402304121.
    PubMed     Abstract available


  70. HILLIS AL, Tamir T, Perry GE, Asara JM, et al
    Parallel phosphoproteomics and metabolomics map the global metabolic tyrosine phosphoproteome.
    Proc Natl Acad Sci U S A. 2024;121:e2413837121.
    PubMed     Abstract available


  71. HOU C, Deng J, Wu C, Zhang J, et al
    Ultradeep O-GlcNAc proteomics reveals widespread O-GlcNAcylation on tyrosine residues of proteins.
    Proc Natl Acad Sci U S A. 2024;121:e2409501121.
    PubMed     Abstract available


  72. BASTIDE P, Rocu P, Wirtz J, Hassler GW, et al
    Modeling the velocity of evolving lineages and predicting dispersal patterns.
    Proc Natl Acad Sci U S A. 2024;121:e2411582121.
    PubMed     Abstract available


  73. LIPMAN DJ, Cherry JL, Strain E, Agarwala R, et al
    Genomic perspectives on foodborne illness.
    Proc Natl Acad Sci U S A. 2024;121:e2411894121.
    PubMed     Abstract available


  74. WHEELER HB, Madrigal AA, Chaim IA
    Mapping the future of oxidative RNA damage in neurodegeneration: Rethinking the status quo with new tools.
    Proc Natl Acad Sci U S A. 2024;121:e2317860121.
    PubMed     Abstract available


    October 2024
  75. CHOY MS, Nguyen HT, Kumar GS, Peti W, et al
    A protein phosphatase 1 specific phosphatase targeting peptide (PhosTAP) to identify the PP1 phosphatome.
    Proc Natl Acad Sci U S A. 2024;121:e2415383121.
    PubMed     Abstract available


  76. LIANG K, Zhou L, Lei Q, Ruan T, et al
    Deep silicification-assisted long-term preservation of structural and genomic information across biospecies: From micro to macro.
    Proc Natl Acad Sci U S A. 2024;121:e2408273121.
    PubMed     Abstract available


  77. GAO J, Yang J, Dong H, Tao S, et al
    The origin of methyl group in methanogen-mediated mercury methylation: From the Wolfe cycle.
    Proc Natl Acad Sci U S A. 2024;121:e2416761121.
    PubMed     Abstract available


  78. BONNET T
    Joining forces to push past paradoxes: Combining quantitative genetics and genomics shows evolution hiding in plain sight.
    Proc Natl Acad Sci U S A. 2024;121:e2417220121.
    PubMed    


  79. RYCROFT JA, Giorgio RT, Sargen M, Helaine S, et al
    Tracking the progeny of bacterial persisters using a CRISPR-based genomic recorder.
    Proc Natl Acad Sci U S A. 2024;121:e2405983121.
    PubMed     Abstract available


  80. KOSTER AK, Yarishkin O, Dubin AE, Kefauver JM, et al
    Chemical mapping of the surface interactome of PIEZO1 identifies CADM1 as a modulator of channel inactivation.
    Proc Natl Acad Sci U S A. 2024;121:e2415934121.
    PubMed     Abstract available


  81. WANG Z, Yu H, Bao W, Qu M, et al
    Proteomic and phosphoproteomic landscape of localized prostate cancer unveils distinct molecular subtypes and insights into precision therapeutics.
    Proc Natl Acad Sci U S A. 2024;121:e2402741121.
    PubMed     Abstract available


    September 2024
  82. ARMSTRONG EE, Mooney JA, Solari KA, Kim BY, et al
    Unraveling the genomic diversity and admixture history of captive tigers in the United States.
    Proc Natl Acad Sci U S A. 2024;121:e2402924121.
    PubMed     Abstract available


  83. CLARAMUNT S, Braun EL, Cracraft J, Fjeldsa J, et al
    Calibrating the genomic clock of modern birds using fossils.
    Proc Natl Acad Sci U S A. 2024;121:e2405887121.
    PubMed    


  84. SHUVAEV S, Lachi D, Koulakov A, Zador A, et al
    Encoding innate ability through a genomic bottleneck.
    Proc Natl Acad Sci U S A. 2024;121:e2409160121.
    PubMed     Abstract available


  85. TAIRA M, Ozato K, Harland RM, Moody SA, et al
    Igor B. Dawid (1935-2024): A pioneer of developmental and molecular biology.
    Proc Natl Acad Sci U S A. 2024;121:e2414869121.
    PubMed    


  86. DU JH, Chen T, Gao M, Wang J, et al
    Joint trajectory inference for single-cell genomics using deep learning with a mixture prior.
    Proc Natl Acad Sci U S A. 2024;121:e2316256121.
    PubMed     Abstract available


  87. CAHILL R, Wang Y, Xian RP, Lee AJ, et al
    Unsupervised pattern identification in spatial gene expression atlas reveals mouse brain regions beyond established ontology.
    Proc Natl Acad Sci U S A. 2024;121:e2319804121.
    PubMed     Abstract available


  88. BADONI S, Pasion-Uy EA, Kor S, Kim SR, et al
    Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content.
    Proc Natl Acad Sci U S A. 2024;121:e2410598121.
    PubMed     Abstract available


  89. LAN T, Yang S, Li H, Zhang Y, et al
    Large-scale genome sequencing of giant pandas improves the understanding of population structure and future conservation initiatives.
    Proc Natl Acad Sci U S A. 2024;121:e2406343121.
    PubMed     Abstract available


    August 2024
  90. NUNEZ JG, Paulose J, Mobius W, Beller DA, et al
    Range expansions across landscapes with quenched noise.
    Proc Natl Acad Sci U S A. 2024;121:e2411487121.
    PubMed     Abstract available


  91. RATH SP, Gupta R, Todres E, Wang H, et al
    Mitochondrial genome copy number variation across tissues in mice and humans.
    Proc Natl Acad Sci U S A. 2024;121:e2402291121.
    PubMed     Abstract available


    July 2024
  92. CHEN L, Chen A, Zhang XD, Saenz Robles MT, et al
    Targeted whole-genome recovery of single viral species in a complex environmental sample.
    Proc Natl Acad Sci U S A. 2024;121:e2404727121.
    PubMed     Abstract available


  93. SOUILMI Y, Wasef S, Williams MP, Conroy G, et al
    Ancient genomes reveal over two thousand years of dingo population structure.
    Proc Natl Acad Sci U S A. 2024;121:e2407584121.
    PubMed     Abstract available


  94. BORTEL P, Hagn G, Skos L, Bileck A, et al
    Memory effects of prior subculture may impact the quality of multiomic perturbation profiles.
    Proc Natl Acad Sci U S A. 2024;121:e2313851121.
    PubMed     Abstract available


  95. PETROS BA
    Identifying changes in viral fitness using population genetic structure.
    Proc Natl Acad Sci U S A. 2024;121:e2410274121.
    PubMed    


  96. LYNCH M, Wei W, Ye Z, Pfrender M, et al
    The genome-wide signature of short-term temporal selection.
    Proc Natl Acad Sci U S A. 2024;121:e2307107121.
    PubMed     Abstract available


  97. TRUMPFF C, Monzel AS, Sandi C, Menon V, et al
    Psychosocial experiences are associated with human brain mitochondrial biology.
    Proc Natl Acad Sci U S A. 2024;121:e2317673121.
    PubMed     Abstract available


  98. SASSO S, Saag L, Spros R, Beneker O, et al
    Capturing the fusion of two ancestries and kinship structures in Merovingian Flanders.
    Proc Natl Acad Sci U S A. 2024;121:e2406734121.
    PubMed     Abstract available


    June 2024
  99. SLEDZIESKI S, Kshirsagar M, Baek M, Dodhia R, et al
    Democratizing protein language models with parameter-efficient fine-tuning.
    Proc Natl Acad Sci U S A. 2024;121:e2405840121.
    PubMed     Abstract available


  100. NAM C, Li LY, Yang Q, Ziman B, et al
    A druggable cascade links methionine metabolism to epigenomic reprogramming in squamous cell carcinoma.
    Proc Natl Acad Sci U S A. 2024;121:e2320835121.
    PubMed     Abstract available


  101. YERMAKOVICH D, Andre M, Brucato N, Kariwiga J, et al
    Denisovan admixture facilitated environmental adaptation in Papua New Guinean populations.
    Proc Natl Acad Sci U S A. 2024;121:e2405889121.
    PubMed     Abstract available


  102. DONKER T, Papathanassopoulos A, Ghosh H, Kociurzynski R, et al
    Estimation of SARS-CoV-2 fitness gains from genomic surveillance data without prior lineage classification.
    Proc Natl Acad Sci U S A. 2024;121:e2314262121.
    PubMed     Abstract available


  103. TAN CH, Wang TY, Park H, Lomenick B, et al
    Single-tissue proteomics in Caenorhabditis elegans reveals proteins resident in intestinal lysosome-related organelles.
    Proc Natl Acad Sci U S A. 2024;121:e2322588121.
    PubMed     Abstract available


    May 2024
  104. HUANG S, Ran Q, Li XM, Bao X, et al
    MACSPI enables tissue-selective proteomic and interactomic analyses in multicellular organisms.
    Proc Natl Acad Sci U S A. 2024;121:e2319060121.
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  105. TEYSSONNIERE EM, Trebulle P, Muenzner J, Loegler V, et al
    Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast.
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  106. LAVANCHY E, Weir BS, Goudet J
    Detecting inbreeding depression in structured populations.
    Proc Natl Acad Sci U S A. 2024;121:e2315780121.
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  107. KOBAYASHI D, Inoue Y, Suzuki R, Matsuda M, et al
    Identification and epidemiological study of an uncultured flavivirus from ticks using viral metagenomics and pseudoinfectious viral particles.
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    April 2024
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    Boom-bust population dynamics drive rapid genetic change.
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  109. JUSTEN HC, Easton WE, Delmore KE
    Mapping seasonal migration in a songbird hybrid zone -- heritability, genetic correlations, and genomic patterns linked to speciation.
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  110. ZHANG J, Cong Q, Shen J, Song L, et al
    What one genus of showy moths can say about migration, adaptation, and wing pattern.
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  111. HOGAN MP, Holding ML, Nystrom GS, Colston TJ, et al
    The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom.
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  112. SUN P, Lu Z, Wang Z, Wang S, et al
    Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family.
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    OASIS: An interpretable, finite-sample valid alternative to Pearson's X(2) for scientific discovery.
    Proc Natl Acad Sci U S A. 2024;121:e2304671121.
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  114. LONG BM, Matsuda Y, Moroney JV
    Algal chloroplast pyrenoids: Evidence for convergent evolution.
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    March 2024
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    The evolutionary genomics of adaptation to stress in wild rhizobium bacteria.
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  116. SHEINMAN M, Arndt PF, Massip F
    Modeling the mosaic structure of bacterial genomes to infer their evolutionary history.
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  117. PEZZINI D, Taylor KL, Reisig DD, Fritz ML, et al
    Cross-pollination in seed-blended refuge and selection for Vip3A resistance in a lepidopteran pest as detected by genomic monitoring.
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  118. SCHRAIBER JG, Edge MD
    Heritability within groups is uninformative about differences among groups: Cases from behavioral, evolutionary, and statistical genetics.
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  119. GROH JS, Coop G
    The temporal and genomic scale of selection following hybridization.
    Proc Natl Acad Sci U S A. 2024;121:e2309168121.
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  120. BORETTO M, Geurts MH, Gandhi S, Ma Z, et al
    Epidermal growth factor receptor (EGFR) is a target of the tumor-suppressor E3 ligase FBXW7.
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    tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa.
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    Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France.
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    Pyrenoid proteomics reveals independent evolution of the CO(2)-concentrating organelle in chlorarachniophytes.
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    February 2024
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    Comparative chemical genomics in Babesia species identifies the alkaline phosphatase PhoD as a determinant of antiparasitic resistance.
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    A general approach for inferring the ancestry of recent ancestors of an admixed individual.
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    The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids.
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    December 2023
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    Genomic loci influence patterns of structural covariance in the human brain.
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    Inclusion of highly admixed genotypes in grapevine genomic analyses leads to an equivocal reconstruction of its domestication history.
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    November 2023
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    Coupled models of genomic surveillance and evolving pandemics with applications for timely public health interventions.
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  146. SIMMONS M, Horbelt N, Sverko T, Scoppola E, et al
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    CAMSAP1 role in orchestrating structure and dynamics of manchette microtubule minus-ends impacts male fertility during spermiogenesis.
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    October 2023
  149. BENEGAS G, Batra SS, Song YS
    DNA language models are powerful predictors of genome-wide variant effects.
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    Functional genomic diversity is correlated with neutral genomic diversity in populations of an endangered rattlesnake.
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    September 2023
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    Starting at Go: Protein structure prediction succumbs to machine learning.
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    Environmental fluctuations explain the universal decay of species-abundance correlations with phylogenetic distance.
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    Rationally designed chimeric PI3K-BET bromodomain inhibitors elicit curative responses in MYC-driven lymphoma.
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    Differential second messenger signaling via dopamine neurons bidirectionally regulates memory retention.
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    August 2023
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    The genomic landscape of swine influenza A viruses in Southeast Asia.
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    Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods.
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    Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis.
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    ADAM17 targeting by human cytomegalovirus remodels the cell surface proteome to simultaneously regulate multiple immune pathways.
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    Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins.
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    July 2023
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    Population genomics reveals meiotic recombination in Fusarium oxysporum.
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    Genomic fold of a "naked" ssRNA virus is critical for stability and propagation.
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    June 2023
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    Evolutionarily diverse origins of deformed wing viruses in western honey bees.
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    March 2023
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    Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale.
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    February 2023
  196. SCHMID C, Schiffels S
    Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data.
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