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COVID-19: Daily Top 10 Papers


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Articles published in Proc Natl Acad Sci U S A

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    April 2021
  1. PALACIOS-FLORES K, Garcia-Sotelo J, Castillo A, Uribe C, et al
    Perfect Match Genomic Landscape strategy: Refinement and customization of reference genomes.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    March 2021
  2. NADEAU SA, Vaughan TG, Scire J, Huisman JS, et al
    The origin and early spread of SARS-CoV-2 in Europe.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


    December 2020
  3. TAOUFIQ Z, Ninov M, Villar-Briones A, Wang HY, et al
    Hidden proteome of synaptic vesicles in the mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:33586-33596.
    PubMed     Abstract available


  4. RINCON-SANDOVAL M, Duarte-Ribeiro E, Davis AM, Santaquiteria A, et al
    Evolutionary determinism and convergence associated with water-column transitions in marine fishes.
    Proc Natl Acad Sci U S A. 2020;117:33396-33403.
    PubMed     Abstract available


  5. AZAR B
    Profile of Haig H. Kazazian Jr.
    Proc Natl Acad Sci U S A. 2020;117:32185-32188.
    PubMed    


  6. CONCILLI M, Petruzzelli R, Parisi S, Catalano F, et al
    Pharmacoproteomics pinpoints HSP70 interaction for correction of the most frequent Wilson disease-causing mutant of ATP7B.
    Proc Natl Acad Sci U S A. 2020;117:32453-32463.
    PubMed     Abstract available


  7. LANDY JA, Oschmann A, Munch SB, Walsh MR, et al
    Ancestral genetic variation in phenotypic plasticity underlies rapid evolutionary changes in resurrected populations of waterfleas.
    Proc Natl Acad Sci U S A. 2020;117:32535-32544.
    PubMed     Abstract available


  8. LI K, Zhang S, Song X, Weyrich A, et al
    Genome evolution of blind subterranean mole rats: Adaptive peripatric versus sympatric speciation.
    Proc Natl Acad Sci U S A. 2020;117:32499-32508.
    PubMed     Abstract available


  9. BORDA V, Alvim I, Mendes M, Silva-Carvalho C, et al
    The genetic structure and adaptation of Andean highlanders and Amazonians are influenced by the interplay between geography and culture.
    Proc Natl Acad Sci U S A. 2020;117:32557-32565.
    PubMed     Abstract available


  10. HELMSTETTER AJ, Bethune K, Kamdem NG, Sonke B, et al
    Individualistic evolutionary responses of Central African rain forest plants to Pleistocene climatic fluctuations.
    Proc Natl Acad Sci U S A. 2020;117:32509-32518.
    PubMed     Abstract available


  11. MARTINSON VG, Gawryluk RMR, Gowen BE, Curtis CI, et al
    Multiple origins of obligate nematode and insect symbionts by a clade of bacteria closely related to plant pathogens.
    Proc Natl Acad Sci U S A. 2020;117:31979-31986.
    PubMed     Abstract available


  12. RAVINDRAN S
    Profile of Se-Jin Lee.
    Proc Natl Acad Sci U S A. 2020;117:30870-30872.
    PubMed    


  13. YANG HC, Chen CH, Wang JH, Liao HC, et al
    Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associations.
    Proc Natl Acad Sci U S A. 2020;117:30679-30686.
    PubMed     Abstract available


  14. AUNINS TR, Erickson KE, Chatterjee A
    Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli.
    Proc Natl Acad Sci U S A. 2020;117:30699-30709.
    PubMed     Abstract available


  15. BISCHOF R, Milleret C, Dupont P, Chipperfield J, et al
    Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring.
    Proc Natl Acad Sci U S A. 2020;117:30531-30538.
    PubMed     Abstract available


    November 2020
  16. ZHANG H, Zoued A, Liu X, Sit B, et al
    Type I interferon remodels lysosome function and modifies intestinal epithelial defense.
    Proc Natl Acad Sci U S A. 2020;117:29862-29871.
    PubMed     Abstract available


  17. CHEN D, Zhang Q, Tang W, Huang Z, et al
    The evolutionary origin and domestication history of goldfish (Carassius auratus).
    Proc Natl Acad Sci U S A. 2020;117:29775-29785.
    PubMed     Abstract available


  18. CLEVES PA, Tinoco AI, Bradford J, Perrin D, et al
    Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.
    Proc Natl Acad Sci U S A. 2020;117:28899-28905.
    PubMed     Abstract available


  19. VIEGAS J
    Profile of Masayori Inouye.
    Proc Natl Acad Sci U S A. 2020;117:28543-28545.
    PubMed    


  20. LEE J, Ha S, Kim M, Kim SW, et al
    Spatial and temporal diversity of glycome expression in mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:28743-28753.
    PubMed     Abstract available


  21. KIM J, Rosenberg NA, Palacios JA
    Distance metrics for ranked evolutionary trees.
    Proc Natl Acad Sci U S A. 2020;117:28876-28886.
    PubMed     Abstract available


  22. EPSTEIN JH, Anthony SJ, Islam A, Kilpatrick AM, et al
    Nipah virus dynamics in bats and implications for spillover to humans.
    Proc Natl Acad Sci U S A. 2020;117:29190-29201.
    PubMed     Abstract available


  23. KOZLENKOV A, Vermunt MW, Apontes P, Li J, et al
    Evolution of regulatory signatures in primate cortical neurons at cell-type resolution.
    Proc Natl Acad Sci U S A. 2020;117:28422-28432.
    PubMed     Abstract available


  24. ROMERO IC, Kong S, Fowlkes CC, Jaramillo C, et al
    Improving the taxonomy of fossil pollen using convolutional neural networks and superresolution microscopy.
    Proc Natl Acad Sci U S A. 2020;117:28496-28505.
    PubMed     Abstract available


  25. STOCKLEY P, Franco C, Claydon AJ, Davidson A, et al
    Revealing mechanisms of mating plug function under sexual selection.
    Proc Natl Acad Sci U S A. 2020;117:27465-27473.
    PubMed     Abstract available


  26. CAO K, Ugarenko M, Ozark PA, Wang J, et al
    DOT1L-controlled cell-fate determination and transcription elongation are independent of H3K79 methylation.
    Proc Natl Acad Sci U S A. 2020;117:27365-27373.
    PubMed     Abstract available


  27. SHIBL AA, Isaac A, Ochsenkuhn MA, Cardenas A, et al
    Diatom modulation of select bacteria through use of two unique secondary metabolites.
    Proc Natl Acad Sci U S A. 2020;117:27445-27455.
    PubMed     Abstract available


  28. SHENG X, Qiu C, Liu H, Gluck C, et al
    Systematic integrated analysis of genetic and epigenetic variation in diabetic kidney disease.
    Proc Natl Acad Sci U S A. 2020 Nov 3. pii: 2005905117.
    PubMed     Abstract available


    October 2020
  29. OIKONOMOU P, Salatino R, Tavazoie S
    In vivo mRNA display enables large-scale proteomics by next generation sequencing.
    Proc Natl Acad Sci U S A. 2020;117:26710-26718.
    PubMed     Abstract available


  30. BUHLMANN P
    Toward causality and improving external validity.
    Proc Natl Acad Sci U S A. 2020;117:25963-25965.
    PubMed    


  31. CARRILLO JD, Faurby S, Silvestro D, Zizka A, et al
    Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
    Proc Natl Acad Sci U S A. 2020;117:26281-26287.
    PubMed     Abstract available


  32. CHEN J, Lu L, Robb SMC, Collin M, et al
    Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.
    Proc Natl Acad Sci U S A. 2020;117:26288-26297.
    PubMed     Abstract available


  33. HAN J, Wang S, Yeung K, Yang D, et al
    Proteome-wide effects of naphthalene-derived secondary organic aerosol in BEAS-2B cells are caused by short-lived unsaturated carbonyls.
    Proc Natl Acad Sci U S A. 2020;117:25386-25395.
    PubMed     Abstract available


  34. HEINDEL DW, Koppolu S, Zhang Y, Kasper B, et al
    Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity.
    Proc Natl Acad Sci U S A. 2020 Oct 12. pii: 2008203117.
    PubMed     Abstract available


  35. RENNER SS
    Bitter gourd from Africa expanded to Southeast Asia and was domesticated there: A new insight from parallel studies.
    Proc Natl Acad Sci U S A. 2020;117:24630-24631.
    PubMed    


  36. MATSUMURA H, Hsiao MC, Lin YP, Toyoda A, et al
    Reply to Renner: Meticulous investigation, not sequencing effort, leads to robust conclusion.
    Proc Natl Acad Sci U S A. 2020;117:24632-24633.
    PubMed    


  37. ANDERSON KM, Collins MA, Kong R, Fang K, et al
    Convergent molecular, cellular, and cortical neuroimaging signatures of major depressive disorder.
    Proc Natl Acad Sci U S A. 2020;117:25138-25149.
    PubMed     Abstract available


  38. NGO D, Wen D, Gao Y, Keyes MJ, et al
    Circulating testican-2 is a podocyte-derived marker of kidney health.
    Proc Natl Acad Sci U S A. 2020;117:25026-25035.
    PubMed     Abstract available


  39. MCWILLIAM HEG, Mak JYW, Awad W, Zorkau M, et al
    Endoplasmic reticulum chaperones stabilize ligand-receptive MR1 molecules for efficient presentation of metabolite antigens.
    Proc Natl Acad Sci U S A. 2020;117:24974-24985.
    PubMed     Abstract available


  40. TUCHOLSKI T, Cai W, Gregorich ZR, Bayne EF, et al
    Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics.
    Proc Natl Acad Sci U S A. 2020;117:24691-24700.
    PubMed     Abstract available


    September 2020
  41. ARISTIZABAL MJ, Anreiter I, Halldorsdottir T, Odgers CL, et al
    Biological embedding of experience: A primer on epigenetics.
    Proc Natl Acad Sci U S A. 2020;117:23261-23269.
    PubMed     Abstract available


  42. MCEWEN LM, O'Donnell KJ, McGill MG, Edgar RD, et al
    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells.
    Proc Natl Acad Sci U S A. 2020;117:23329-23335.
    PubMed     Abstract available


  43. VAN DEN BROECK F, Savill NJ, Imamura H, Sanders M, et al
    Ecological divergence and hybridization of Neotropical Leishmania parasites.
    Proc Natl Acad Sci U S A. 2020 Sep 21. pii: 1920136117.
    PubMed     Abstract available


  44. HECKMANN D, Campeau A, Lloyd CJ, Phaneuf PV, et al
    Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.
    Proc Natl Acad Sci U S A. 2020;117:23182-23190.
    PubMed     Abstract available


  45. ALLEN RS, Gregg CM, Okada S, Menon A, et al
    Plant expression of NifD protein variants resistant to mitochondrial degradation.
    Proc Natl Acad Sci U S A. 2020;117:23165-23173.
    PubMed     Abstract available


  46. BJORKEROTH J, Campbell K, Malina C, Yu R, et al
    Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media.
    Proc Natl Acad Sci U S A. 2020;117:21804-21812.
    PubMed     Abstract available


  47. WAINBERG M, Magis AT, Earls JC, Lovejoy JC, et al
    Multiomic blood correlates of genetic risk identify presymptomatic disease alterations.
    Proc Natl Acad Sci U S A. 2020;117:21813-21820.
    PubMed     Abstract available


  48. CAI W, Huang J, Zhu Q, Li BE, et al
    Enhancer dependence of cell-type-specific gene expression increases with developmental age.
    Proc Natl Acad Sci U S A. 2020;117:21450-21458.
    PubMed     Abstract available


    August 2020
  49. BUFFALO V, Coop G
    Estimating the genome-wide contribution of selection to temporal allele frequency change.
    Proc Natl Acad Sci U S A. 2020;117:20672-20680.
    PubMed     Abstract available


  50. KWESI-MALIEPAARD EM, Aslam MA, Alemdehy MF, van den Brand T, et al
    The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8(+) T cells.
    Proc Natl Acad Sci U S A. 2020;117:20706-20716.
    PubMed     Abstract available


  51. WILLIAMS LM, McCann FE, Cabrita MA, Layton T, et al
    Identifying collagen VI as a target of fibrotic diseases regulated by CREBBP/EP300.
    Proc Natl Acad Sci U S A. 2020;117:20753-20763.
    PubMed     Abstract available


  52. WEBER JA, Park SG, Luria V, Jeon S, et al
    The whale shark genome reveals how genomic and physiological properties scale with body size.
    Proc Natl Acad Sci U S A. 2020;117:20662-20671.
    PubMed     Abstract available


  53. CARBALLAR-LEJARAZU R, Ogaugwu C, Tushar T, Kelsey A, et al
    Next-generation gene drive for population modification of the malaria vector mosquito, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2020 Aug 24. pii: 2010214117.
    PubMed     Abstract available


  54. LA CONO V, Messina E, Rohde M, Arcadi E, et al
    Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides.
    Proc Natl Acad Sci U S A. 2020;117:20223-20234.
    PubMed     Abstract available


  55. AMSTER G, Murphy DA, Milligan WR, Sella G, et al
    Changes in life history and population size can explain the relative neutral diversity levels on X and autosomes in extant human populations.
    Proc Natl Acad Sci U S A. 2020;117:20063-20069.
    PubMed     Abstract available


  56. ABU RAYYAN A, Kamal L, Casadei S, Brownstein Z, et al
    Genomic analysis of inherited hearing loss in the Palestinian population.
    Proc Natl Acad Sci U S A. 2020;117:20070-20076.
    PubMed     Abstract available


  57. PARK A, Oh S, Jung KL, Choi UY, et al
    Global epigenomic analysis of KSHV-infected primary effusion lymphoma identifies functional MYC superenhancers and enhancer RNAs.
    Proc Natl Acad Sci U S A. 2020 Aug 18. pii: 1922216117.
    PubMed     Abstract available


  58. ULHUQ FR, Gomes MC, Duggan GM, Guo M, et al
    A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition.
    Proc Natl Acad Sci U S A. 2020 Aug 7. pii: 2006110117.
    PubMed     Abstract available


  59. SOKOLOWSKI MB
    Honey bee colony aggression and indirect genetic effects.
    Proc Natl Acad Sci U S A. 2020;117:18148-18150.
    PubMed    


    July 2020
  60. PARASKEVOPOULOU S, Pirzer F, Goldmann N, Schmid J, et al
    Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus.
    Proc Natl Acad Sci U S A. 2020;117:17977-17983.
    PubMed     Abstract available


  61. SANDOVAL-CASTILLO J, Gates K, Brauer CJ, Smith S, et al
    Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions.
    Proc Natl Acad Sci U S A. 2020;117:17112-17121.
    PubMed     Abstract available


  62. PEREDO EL, Cardon ZG
    Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae.
    Proc Natl Acad Sci U S A. 2020;117:17438-17445.
    PubMed     Abstract available


  63. HAWCO NJ, McIlvin MM, Bundy RM, Tagliabue A, et al
    Minimal cobalt metabolism in the marine cyanobacterium Prochlorococcus.
    Proc Natl Acad Sci U S A. 2020;117:15740-15747.
    PubMed     Abstract available


  64. HE C, Song W, Weston TA, Tran C, et al
    Peroxidasin-mediated bromine enrichment of basement membranes.
    Proc Natl Acad Sci U S A. 2020;117:15827-15836.
    PubMed     Abstract available


  65. LAY AC, Barrington AF, Hurcombe JA, Ramnath RD, et al
    A role for NPY-NPY2R signaling in albuminuric kidney disease.
    Proc Natl Acad Sci U S A. 2020;117:15862-15873.
    PubMed     Abstract available


    June 2020
  66. RAVINDRAN S
    QnAs with Zachary B. Lippman.
    Proc Natl Acad Sci U S A. 2020;117:14624-14625.
    PubMed    


  67. SU QP, Zhao ZW, Meng L, Ding M, et al
    Superresolution imaging reveals spatiotemporal propagation of human replication foci mediated by CTCF-organized chromatin structures.
    Proc Natl Acad Sci U S A. 2020;117:15036-15046.
    PubMed     Abstract available


  68. VENO MT, Reschke CR, Morris G, Connolly NMC, et al
    A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy.
    Proc Natl Acad Sci U S A. 2020 Jun 24. pii: 1919313117.
    PubMed     Abstract available


  69. ZHANG J, Peters RJ
    Why are momilactones always associated with biosynthetic gene clusters in plants?
    Proc Natl Acad Sci U S A. 2020;117:13867-13869.
    PubMed    


  70. RAVINDRAN S
    Profile of Christopher A. Walsh.
    Proc Natl Acad Sci U S A. 2020;117:13861-13863.
    PubMed    


  71. BOULARD M, Rucli S, Edwards JR, Bestor TH, et al
    Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters.
    Proc Natl Acad Sci U S A. 2020;117:14292-14298.
    PubMed     Abstract available


  72. WU X, Cao B, Aquino P, Chiu TP, et al
    Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria.
    Proc Natl Acad Sci U S A. 2020;117:14322-14330.
    PubMed     Abstract available


  73. HEALTON SE, Pinto HD, Mishra LN, Hamilton GA, et al
    H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction.
    Proc Natl Acad Sci U S A. 2020;117:14251-14258.
    PubMed     Abstract available


  74. KRESS WJ, Mazet JAK, Hebert PDN
    Opinion: Intercepting pandemics through genomics.
    Proc Natl Acad Sci U S A. 2020;117:13852-13855.
    PubMed    


  75. RAUSELL A, Luo Y, Lopez M, Seeleuthner Y, et al
    Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes.
    Proc Natl Acad Sci U S A. 2020;117:13626-13636.
    PubMed     Abstract available


  76. ROACH TNF, Little M, Arts MGI, Huckeba J, et al
    A multiomic analysis of in situ coral-turf algal interactions.
    Proc Natl Acad Sci U S A. 2020;117:13588-13595.
    PubMed     Abstract available


  77. MAHAMKALI V, Valgepea K, de Souza Pinto Lemgruber R, Plan M, et al
    Redox controls metabolic robustness in the gas-fermenting acetogen Clostridium autoethanogenum.
    Proc Natl Acad Sci U S A. 2020;117:13168-13175.
    PubMed     Abstract available


  78. DEGRANDMAISON J, Abdallah K, Blais V, Genier S, et al
    In vivo mapping of a GPCR interactome using knockin mice.
    Proc Natl Acad Sci U S A. 2020;117:13105-13116.
    PubMed     Abstract available


    May 2020
  79. BLATT M, Gusev A, Polyakov Y, Goldwasser S, et al
    Secure large-scale genome-wide association studies using homomorphic encryption.
    Proc Natl Acad Sci U S A. 2020;117:11608-11613.
    PubMed     Abstract available


  80. HUANG J, Khademi M, Fugger L, Lindhe O, et al
    Inflammation-related plasma and CSF biomarkers for multiple sclerosis.
    Proc Natl Acad Sci U S A. 2020 May 26. pii: 1912839117.
    PubMed     Abstract available


  81. PINEDA SS, Chin YK, Undheim EAB, Senff S, et al
    Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.
    Proc Natl Acad Sci U S A. 2020;117:11399-11408.
    PubMed     Abstract available


  82. RATHMANN H, Reyes-Centeno H
    Testing the utility of dental morphological trait combinations for inferring human neutral genetic variation.
    Proc Natl Acad Sci U S A. 2020;117:10769-10777.
    PubMed     Abstract available


  83. MOURKAS E, Taylor AJ, Meric G, Bayliss SC, et al
    Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni.
    Proc Natl Acad Sci U S A. 2020;117:11018-11028.
    PubMed     Abstract available


  84. DE MANUEL M, Barnett R, Sandoval-Velasco M, Yamaguchi N, et al
    The evolutionary history of extinct and living lions.
    Proc Natl Acad Sci U S A. 2020;117:10927-10934.
    PubMed     Abstract available


  85. CHAKRABORTY A, Ruff SE, Dong X, Ellefson ED, et al
    Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres.
    Proc Natl Acad Sci U S A. 2020;117:11029-11037.
    PubMed     Abstract available


  86. LONG JZ
    Proteomics illuminates fat as key tissue in aging.
    Proc Natl Acad Sci U S A. 2020;117:10111-10112.
    PubMed    


  87. PETIT CS, Lee JJ, Boland S, Swarup S, et al
    Inhibition of sphingolipid synthesis improves outcomes and survival in GARP mutant wobbler mice, a model of motor neuron degeneration.
    Proc Natl Acad Sci U S A. 2020;117:10565-10574.
    PubMed     Abstract available


  88. LYNCH M
    The evolutionary scaling of cellular traits imposed by the drift barrier.
    Proc Natl Acad Sci U S A. 2020;117:10435-10444.
    PubMed     Abstract available


  89. DEBOUTTE W, Beller L, Yinda CK, Maes P, et al
    Honey-bee-associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential.
    Proc Natl Acad Sci U S A. 2020;117:10511-10519.
    PubMed     Abstract available


  90. DONIHUE CM, Kowaleski AM, Losos JB, Algar AC, et al
    Hurricane effects on Neotropical lizards span geographic and phylogenetic scales.
    Proc Natl Acad Sci U S A. 2020;117:10429-10434.
    PubMed     Abstract available


  91. MCDERMOTT A
    Inner Workings: Molecular biologists offer "wartime service" in the effort to test for COVID-19.
    Proc Natl Acad Sci U S A. 2020;117:9656-9659.
    PubMed    


  92. CRANE PR, Friis EM
    Water lilies, loss of woodiness, and model systems.
    Proc Natl Acad Sci U S A. 2020;117:9674-9676.
    PubMed    


  93. YU Q, Xiao H, Jedrychowski MP, Schweppe DK, et al
    Sample multiplexing for targeted pathway proteomics in aging mice.
    Proc Natl Acad Sci U S A. 2020;117:9723-9732.
    PubMed     Abstract available


  94. PARDO J, Man Wai C, Chay H, Madden CF, et al
    Intertwined signatures of desiccation and drought tolerance in grasses.
    Proc Natl Acad Sci U S A. 2020;117:10079-10088.
    PubMed     Abstract available


  95. CAMMACK AJ, Moudgil A, Chen J, Vasek MJ, et al
    A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues.
    Proc Natl Acad Sci U S A. 2020;117:10003-10014.
    PubMed     Abstract available


    April 2020
  96. FLYNN JM, Hubley R, Goubert C, Rosen J, et al
    RepeatModeler2 for automated genomic discovery of transposable element families.
    Proc Natl Acad Sci U S A. 2020;117:9451-9457.
    PubMed     Abstract available


  97. LEE S, Hu Y, Loo SK, Tan Y, et al
    Landscape analysis of adjacent gene rearrangements reveals BCL2L14-ETV6 gene fusions in more aggressive triple-negative breast cancer.
    Proc Natl Acad Sci U S A. 2020 Apr 22. pii: 1921333117.
    PubMed     Abstract available


  98. CHERRY TJ, Yang MG, Harmin DA, Tao P, et al
    Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease.
    Proc Natl Acad Sci U S A. 2020;117:9001-9012.
    PubMed     Abstract available


  99. OBERHOFER G, Ivy T, Hay BA
    Gene drive and resilience through renewal with next generation Cleave and Rescue selfish genetic elements.
    Proc Natl Acad Sci U S A. 2020;117:9013-9021.
    PubMed     Abstract available


  100. CAMPBELL K, Westholm J, Kasvandik S, Di Bartolomeo F, et al
    Building blocks are synthesized on demand during the yeast cell cycle.
    Proc Natl Acad Sci U S A. 2020;117:7575-7583.
    PubMed     Abstract available


  101. LEUNG KK, Wilson GM, Kirkemo LL, Riley NM, et al
    Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes.
    Proc Natl Acad Sci U S A. 2020;117:7764-7775.
    PubMed     Abstract available


  102. DAVIS TH
    QnAs with Jens Nielsen.
    Proc Natl Acad Sci U S A. 2020;117:7548-7549.
    PubMed    


  103. YE M, Goudot C, Hoyler T, Lemoine B, et al
    Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers.
    Proc Natl Acad Sci U S A. 2020;117:7905-7916.
    PubMed     Abstract available


  104. YADAV V, Sun S, Coelho MA, Heitman J, et al
    Centromere scission drives chromosome shuffling and reproductive isolation.
    Proc Natl Acad Sci U S A. 2020;117:7917-7928.
    PubMed     Abstract available


    March 2020
  105. OYAS O, Borrell S, Trauner A, Zimmermann M, et al
    Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis.
    Proc Natl Acad Sci U S A. 2020 Mar 30. pii: 1915551117.
    PubMed     Abstract available


  106. ALLEN JP, Ozer EA, Minasov G, Shuvalova L, et al
    A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant.
    Proc Natl Acad Sci U S A. 2020;117:6811-6821.
    PubMed     Abstract available


  107. SLODKOWICZ G, Goldman N
    Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals.
    Proc Natl Acad Sci U S A. 2020;117:5977-5986.
    PubMed     Abstract available


  108. SEIF Y, Choudhary KS, Hefner Y, Anand A, et al
    Metabolic and genetic basis for auxotrophies in Gram-negative species.
    Proc Natl Acad Sci U S A. 2020;117:6264-6273.
    PubMed     Abstract available


  109. LIN Y, Wozniak JM, Grimsey NJ, Girada S, et al
    Phosphoproteomic analysis of protease-activated receptor-1 biased signaling reveals unique modulators of endothelial barrier function.
    Proc Natl Acad Sci U S A. 2020;117:5039-5048.
    PubMed     Abstract available


  110. HARRISON S, Spasojevic MJ, Li D
    Climate and plant community diversity in space and time.
    Proc Natl Acad Sci U S A. 2020;117:4464-4470.
    PubMed     Abstract available


  111. ZHANG Y, Wendte JM, Ji L, Schmitz RJ, et al
    Natural variation in DNA methylation homeostasis and the emergence of epialleles.
    Proc Natl Acad Sci U S A. 2020;117:4874-4884.
    PubMed     Abstract available


  112. ZHANG X, Hong D, Ma S, Ward T, et al
    Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage.
    Proc Natl Acad Sci U S A. 2020;117:4864-4873.
    PubMed     Abstract available


  113. KESAVAN R, Fromel T, Zukunft S, Laban H, et al
    Cyp2c44 regulates prostaglandin synthesis, lymphangiogenesis, and metastasis in a mouse model of breast cancer.
    Proc Natl Acad Sci U S A. 2020 Mar 2. pii: 1921381117.
    PubMed     Abstract available


  114. YANG Q, Zhao X, Lemey P, Suchard MA, et al
    Assessing the role of live poultry trade in community-structured transmission of avian influenza in China.
    Proc Natl Acad Sci U S A. 2020 Mar 2. pii: 1906954117.
    PubMed     Abstract available


    February 2020
  115. BELLIS ES, Kelly EA, Lorts CM, Gao H, et al
    Genomics of sorghum local adaptation to a parasitic plant.
    Proc Natl Acad Sci U S A. 2020;117:4243-4251.
    PubMed     Abstract available


  116. FEDOROV VB, Trucchi E, Goropashnaya AV, Waltari E, et al
    Impact of past climate warming on genomic diversity and demographic history of collared lemmings across the Eurasian Arctic.
    Proc Natl Acad Sci U S A. 2020;117:3026-3033.
    PubMed     Abstract available


  117. GRAHAM G, Csicsery N, Stasiowski E, Thouvenin G, et al
    Genome-scale transcriptional dynamics and environmental biosensing.
    Proc Natl Acad Sci U S A. 2020;117:3301-3306.
    PubMed     Abstract available


  118. MCDERMOTT A
    Inner Workings: A microscopic mystery at the heart of mass-coral bleaching.
    Proc Natl Acad Sci U S A. 2020;117:2232-2235.
    PubMed    


  119. CASTRO E SILVA MA, Nunes K, Lemes RB, Mas-Sandoval A, et al
    Genomic insight into the origins and dispersal of the Brazilian coastal natives.
    Proc Natl Acad Sci U S A. 2020;117:2372-2377.
    PubMed     Abstract available


  120. KESSLER MD, Loesch DP, Perry JA, Heard-Costa NL, et al
    De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population.
    Proc Natl Acad Sci U S A. 2020;117:2560-2569.
    PubMed     Abstract available


    January 2020
  121. SURAN M
    Finding the tail end: The discovery of RNA splicing.
    Proc Natl Acad Sci U S A. 2020;117:1829-1832.
    PubMed    


  122. MILLER AC, Comellas AP, Hornick DB, Stoltz DA, et al
    Cystic fibrosis carriers are at increased risk for a wide range of cystic fibrosis-related conditions.
    Proc Natl Acad Sci U S A. 2020;117:1621-1627.
    PubMed     Abstract available


  123. ROWAN J, Beaudrot L, Franklin J, Reed KE, et al
    Geographically divergent evolutionary and ecological legacies shape mammal biodiversity in the global tropics and subtropics.
    Proc Natl Acad Sci U S A. 2020;117:1559-1565.
    PubMed     Abstract available


  124. SOKOLOWSKI MB
    Functional testing of ASD-associated genes.
    Proc Natl Acad Sci U S A. 2020;117:26-28.
    PubMed    


  125. NIETZEL T, Mostertz J, Ruberti C, Nee G, et al
    Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination.
    Proc Natl Acad Sci U S A. 2020;117:741-751.
    PubMed     Abstract available


  126. MCDIARMID TA, Belmadani M, Liang J, Meili F, et al
    Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.
    Proc Natl Acad Sci U S A. 2020;117:656-667.
    PubMed     Abstract available


  127. MERWIN NJ, Mousa WK, Dejong CA, Skinnider MA, et al
    DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products.
    Proc Natl Acad Sci U S A. 2020;117:371-380.
    PubMed     Abstract available


    December 2019
  128. ADOLFI A, Poulton B, Anthousi A, Macilwee S, et al
    Functional genetic validation of key genes conferring insecticide resistance in the major African malaria vector, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2019 Dec 4. pii: 1914633116.
    PubMed     Abstract available


  129. YILDIRIM F, Ng CW, Kappes V, Ehrenberger T, et al
    Early epigenomic and transcriptional changes reveal Elk-1 transcription factor as a therapeutic target in Huntington's disease.
    Proc Natl Acad Sci U S A. 2019;116:24840-24851.
    PubMed     Abstract available


    November 2019
  130. QIAN H, Deng T, Jin Y, Mao L, et al
    Phylogenetic dispersion and diversity in regional assemblages of seed plants in China.
    Proc Natl Acad Sci U S A. 2019;116:23192-23201.
    PubMed     Abstract available


    October 2019
  131. BROWN TS, Challagundla L, Baugh EH, Omar SV, et al
    Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa.
    Proc Natl Acad Sci U S A. 2019 Oct 28. pii: 1906636116.
    PubMed     Abstract available


  132. COX SL, Ruff CB, Maier RM, Mathieson I, et al
    Genetic contributions to variation in human stature in prehistoric Europe.
    Proc Natl Acad Sci U S A. 2019;116:21484-21492.
    PubMed     Abstract available


  133. LI G, Eckert MA, Chang JW, Montgomery JE, et al
    Ultrasensitive, multiplexed chemoproteomic profiling with soluble activity-dependent proximity ligation.
    Proc Natl Acad Sci U S A. 2019;116:21493-21500.
    PubMed     Abstract available


  134. MARCOVITZ A, Turakhia Y, Chen HI, Gloudemans M, et al
    A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales.
    Proc Natl Acad Sci U S A. 2019;116:21094-21103.
    PubMed     Abstract available


  135. MUNDERLOH UG
    The beginning of an era of functional genomics in Rickettsiology is steeped in history.
    Proc Natl Acad Sci U S A. 2019;116:20252-20253.
    PubMed    


  136. NEEDHAM DM, Yoshizawa S, Hosaka T, Poirier C, et al
    A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.
    Proc Natl Acad Sci U S A. 2019;116:20574-20583.
    PubMed     Abstract available


  137. RUDMAN SM, Greenblum S, Hughes RC, Rajpurohit S, et al
    Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2019;116:20025-20032.
    PubMed     Abstract available


  138. RYAN SF, Lombaert E, Espeset A, Vila R, et al
    Global invasion history of the agricultural pest butterfly Pieris rapae revealed with genomics and citizen science.
    Proc Natl Acad Sci U S A. 2019;116:20015-20024.
    PubMed     Abstract available


    September 2019
  139. GEBER J, Tromp M, Scott A, Bouwman A, et al
    Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine.
    Proc Natl Acad Sci U S A. 2019;116:19380-19385.
    PubMed     Abstract available


  140. LIU K, Theusch E, Zhou Y, Ashuach T, et al
    GeneFishing to reconstruct context specific portraits of biological processes.
    Proc Natl Acad Sci U S A. 2019;116:18943-18950.
    PubMed     Abstract available


  141. KUMAR S, Clarke D, Gerstein MB
    Leveraging protein dynamics to identify cancer mutational hotspots using 3D structures.
    Proc Natl Acad Sci U S A. 2019;116:18962-18970.
    PubMed     Abstract available


  142. TOEWS DPL, Taylor SA, Streby HM, Kramer GR, et al
    Selection on VPS13A linked to migration in a songbird.
    Proc Natl Acad Sci U S A. 2019;116:18272-18274.
    PubMed     Abstract available


  143. TIAN C, Clauser KR, Ohlund D, Rickelt S, et al
    Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells.
    Proc Natl Acad Sci U S A. 2019 Sep 4. pii: 1908626116.
    PubMed     Abstract available


  144. HOPKINS BR, Sepil I, Thezenas ML, Craig JF, et al
    Divergent allocation of sperm and the seminal proteome along a competition gradient in Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2019;116:17925-17933.
    PubMed     Abstract available


  145. FRAZAO N, Sousa A, Lassig M, Gordo I, et al
    Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut.
    Proc Natl Acad Sci U S A. 2019;116:17906-17915.
    PubMed     Abstract available


    August 2019
  146. SHEN Y, Grisdale CJ, Islam SA, Bose P, et al
    Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments.
    Proc Natl Acad Sci U S A. 2019 Aug 30. pii: 1813495116.
    PubMed     Abstract available


  147. KREMER D, Perron H, Kury P
    Reply to Ruprecht and Mayer: Unearthing genomic fossils in the pathogenesis of multiple sclerosis.
    Proc Natl Acad Sci U S A. 2019 Aug 27. pii: 1912315116.
    PubMed    


  148. PERSI E, Prandi D, Wolf YI, Pozniak Y, et al
    Proteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues.
    Proc Natl Acad Sci U S A. 2019;116:16987-16996.
    PubMed     Abstract available


  149. STEINRUCKEN M, Kamm J, Spence JP, Song YS, et al
    Inference of complex population histories using whole-genome sequences from multiple populations.
    Proc Natl Acad Sci U S A. 2019;116:17115-17120.
    PubMed     Abstract available


  150. SOTOUDEH R, Harris KM, Conley D
    Effects of the peer metagenomic environment on smoking behavior.
    Proc Natl Acad Sci U S A. 2019;116:16302-16307.
    PubMed     Abstract available


  151. ARCHIBALD JM
    Genomics reveals alga-associated cyanobacteria hiding in plain sight.
    Proc Natl Acad Sci U S A. 2019;116:15757-15759.
    PubMed    


  152. AZAR B
    QnAs with David Reich.
    Proc Natl Acad Sci U S A. 2019;116:15752-15753.
    PubMed    


  153. NAKAYAMA T, Nomura M, Takano Y, Tanifuji G, et al
    Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host.
    Proc Natl Acad Sci U S A. 2019;116:15973-15978.
    PubMed     Abstract available


    July 2019
  154. OUYANG W, Han J
    Universal amplification-free molecular diagnostics by billion-fold hierarchical nanofluidic concentration.
    Proc Natl Acad Sci U S A. 2019 Jul 29. pii: 1904513116.
    PubMed     Abstract available


  155. GREENLON A, Chang PL, Damtew ZM, Muleta A, et al
    Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.
    Proc Natl Acad Sci U S A. 2019;116:15200-15209.
    PubMed     Abstract available


  156. DARNET S, Dragalzew AC, Amaral DB, Sousa JF, et al
    Deep evolutionary origin of limb and fin regeneration.
    Proc Natl Acad Sci U S A. 2019;116:15106-15115.
    PubMed     Abstract available


  157. HAMM JN, Erdmann S, Eloe-Fadrosh EA, Angeloni A, et al
    Unexpected host dependency of Antarctic Nanohaloarchaeota.
    Proc Natl Acad Sci U S A. 2019;116:14661-14670.
    PubMed     Abstract available


  158. CALLIER V
    Core Concept: Gene transfers from bacteria and viruses may be shaping complex organisms.
    Proc Natl Acad Sci U S A. 2019;116:13714-13716.
    PubMed    


  159. LOBKOVSKY AE, Levi L, Wolf YI, Maiers M, et al
    Multiplicative fitness, rapid haplotype discovery, and fitness decay explain evolution of human MHC.
    Proc Natl Acad Sci U S A. 2019;116:14098-14104.
    PubMed     Abstract available


  160. RINKER DC, Specian NK, Zhao S, Gibbons JG, et al
    Polar bear evolution is marked by rapid changes in gene copy number in response to dietary shift.
    Proc Natl Acad Sci U S A. 2019;116:13446-13451.
    PubMed     Abstract available


    June 2019
  161. CACERES PS, Gravotta D, Zager PJ, Dephoure N, et al
    Quantitative proteomics of MDCK cells identify unrecognized roles of clathrin adaptor AP-1 in polarized distribution of surface proteins.
    Proc Natl Acad Sci U S A. 2019;116:11796-11805.
    PubMed     Abstract available


  162. LEWIS VM, Saunders LM, Larson TA, Bain EJ, et al
    Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores.
    Proc Natl Acad Sci U S A. 2019;116:11806-11811.
    PubMed     Abstract available


  163. XU L, Stige LC, Leirs H, Neerinckx S, et al
    Historical and genomic data reveal the influencing factors on global transmission velocity of plague during the Third Pandemic.
    Proc Natl Acad Sci U S A. 2019;116:11833-11838.
    PubMed     Abstract available


  164. KANG L, Rashkovetsky E, Michalak K, Garner HR, et al
    Genomic divergence and adaptive convergence in Drosophila simulans from Evolution Canyon, Israel.
    Proc Natl Acad Sci U S A. 2019;116:11839-11844.
    PubMed     Abstract available


  165. TORGASHEVA AA, Malinovskaya LP, Zadesenets KS, Karamysheva TV, et al
    Germline-restricted chromosome (GRC) is widespread among songbirds.
    Proc Natl Acad Sci U S A. 2019;116:11845-11850.
    PubMed     Abstract available


  166. TAKASHI Y, Kosako H, Sawatsubashi S, Kinoshita Y, et al
    Activation of unliganded FGF receptor by extracellular phosphate potentiates proteolytic protection of FGF23 by its O-glycosylation.
    Proc Natl Acad Sci U S A. 2019;116:11418-11427.
    PubMed     Abstract available


    May 2019
  167. MA X, Huang J
    Predicting clinical outcome of therapy-resistant prostate cancer.
    Proc Natl Acad Sci U S A. 2019 May 21. pii: 1906812116.
    PubMed    


  168. BRIGHAM BS, Kitzrow JP, Reyes JC, Musier-Forsyth K, et al
    Intrinsic conformational dynamics of the HIV-1 genomic RNA 5'UTR.
    Proc Natl Acad Sci U S A. 2019 May 8. pii: 1902271116.
    PubMed     Abstract available


  169. REYNOLDS AW, Mata-Miguez J, Miro-Herrans A, Briggs-Cloud M, et al
    Comparing signals of natural selection between three Indigenous North American populations.
    Proc Natl Acad Sci U S A. 2019;116:9312-9317.
    PubMed     Abstract available


  170. ABIDA W, Cyrta J, Heller G, Prandi D, et al
    Genomic correlates of clinical outcome in advanced prostate cancer.
    Proc Natl Acad Sci U S A. 2019 May 6. pii: 1902651116.
    PubMed     Abstract available


    April 2019
  171. DOLGIN E
    Inner Workings: Genomics blazes a trail to improved cannabis cultivation.
    Proc Natl Acad Sci U S A. 2019;116:8638-8640.
    PubMed    


  172. MIRANDA A, Hamilton PT, Zhang AW, Pattnaik S, et al
    Cancer stemness, intratumoral heterogeneity, and immune response across cancers.
    Proc Natl Acad Sci U S A. 2019;116:9020-9029.
    PubMed     Abstract available


  173. AMINI S, Tadayon M, Loke JJ, Kumar A, et al
    A diecast mineralization process forms the tough mantis shrimp dactyl club.
    Proc Natl Acad Sci U S A. 2019;116:8685-8692.
    PubMed     Abstract available


  174. PALACIOS-FLORES K, Castillo A, Uribe C, Garcia Sotelo J, et al
    Prediction and identification of recurrent genomic rearrangements that generate chimeric chromosomes in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 2019;116:8445-8450.
    PubMed     Abstract available


  175. BEMMELS JB, Knowles LL, Dick CW
    Genomic evidence of survival near ice sheet margins for some, but not all, North American trees.
    Proc Natl Acad Sci U S A. 2019;116:8431-8436.
    PubMed     Abstract available


  176. KOTELNIKOVA E, Kiani NA, Messinis D, Pertsovskaya I, et al
    MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis.
    Proc Natl Acad Sci U S A. 2019 Apr 19. pii: 1818347116.
    PubMed     Abstract available


  177. VENETZ JE, Del Medico L, Wolfle A, Schachle P, et al
    Chemical synthesis rewriting of a bacterial genome to achieve design flexibility and biological functionality.
    Proc Natl Acad Sci U S A. 2019;116:8070-8079.
    PubMed     Abstract available


  178. WEE S, Alli-Shaik A, Kek R, Swa HLF, et al
    Multiplex targeted mass spectrometry assay for one-shot flavivirus diagnosis.
    Proc Natl Acad Sci U S A. 2019;116:6754-6759.
    PubMed     Abstract available


    March 2019
  179. AZAR B
    Profile of Daniel A. Haber.
    Proc Natl Acad Sci U S A. 2019;116:5840-5842.
    PubMed    


  180. LI W, Cong Q, Shen J, Zhang J, et al
    Genomes of skipper butterflies reveal extensive convergence of wing patterns.
    Proc Natl Acad Sci U S A. 2019;116:6232-6237.
    PubMed     Abstract available


  181. MASHAYEKHI S, Beerli P
    Fractional coalescent.
    Proc Natl Acad Sci U S A. 2019;116:6244-6249.
    PubMed     Abstract available


  182. CROW M, Lim N, Ballouz S, Pavlidis P, et al
    Predictability of human differential gene expression.
    Proc Natl Acad Sci U S A. 2019;116:6491-6500.
    PubMed     Abstract available


  183. OBERHOFER G, Ivy T, Hay BA
    Cleave and Rescue, a novel selfish genetic element and general strategy for gene drive.
    Proc Natl Acad Sci U S A. 2019;116:6250-6259.
    PubMed     Abstract available


  184. HELBERT W, Poulet L, Drouillard S, Mathieu S, et al
    Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space.
    Proc Natl Acad Sci U S A. 2019;116:6063-6068.
    PubMed     Abstract available


  185. GAO P, Uzun Y, He B, Salamati SE, et al
    Risk variants disrupting enhancers of TH1 and TREG cells in type 1 diabetes.
    Proc Natl Acad Sci U S A. 2019 Mar 25. pii: 1815336116.
    PubMed     Abstract available


  186. NICAISE AM, Wagstaff LJ, Willis CM, Paisie C, et al
    Cellular senescence in progenitor cells contributes to diminished remyelination potential in progressive multiple sclerosis.
    Proc Natl Acad Sci U S A. 2019 Mar 25. pii: 1818348116.
    PubMed     Abstract available


  187. KNIJNENBURG TA, Vockley JG, Chambwe N, Gibbs DL, et al
    Genomic and molecular characterization of preterm birth.
    Proc Natl Acad Sci U S A. 2019;116:5819-5827.
    PubMed     Abstract available


  188. YANG CJ, Samayoa LF, Bradbury PJ, Olukolu BA, et al
    The genetic architecture of teosinte catalyzed and constrained maize domestication.
    Proc Natl Acad Sci U S A. 2019;116:5643-5652.
    PubMed     Abstract available


  189. SHAO L, Xing F, Xu C, Zhang Q, et al
    Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis.
    Proc Natl Acad Sci U S A. 2019;116:5653-5658.
    PubMed     Abstract available


  190. ZHOU J, Li Y
    SNPs deciding the rapid growth of cyanobacteria are alterable.
    Proc Natl Acad Sci U S A. 2019;116:3945.
    PubMed    


  191. UNGERER J, Wendt KE, Hendry JI, Maranas CD, et al
    Reply to Zhou and Li: Plasticity of the genomic haplotype of Synechococcus elongatus leads to rapid strain adaptation under laboratory conditions.
    Proc Natl Acad Sci U S A. 2019;116:3946-3947.
    PubMed    


  192. SHERIDAN MA, Yang Y, Jain A, Lyons AS, et al
    Early onset preeclampsia in a model for human placental trophoblast.
    Proc Natl Acad Sci U S A. 2019;116:4336-4345.
    PubMed     Abstract available


  193. KUNOVA BOSAKOVA M, Nita A, Gregor T, Varecha M, et al
    Fibroblast growth factor receptor influences primary cilium length through an interaction with intestinal cell kinase.
    Proc Natl Acad Sci U S A. 2019;116:4316-4325.
    PubMed     Abstract available


    February 2019
  194. GAO W, Sun YB, Zhou WW, Xiong ZJ, et al
    Genomic and transcriptomic investigations of the evolutionary transition from oviparity to viviparity.
    Proc Natl Acad Sci U S A. 2019;116:3646-3655.
    PubMed     Abstract available


  195. RAMIREZ-FLANDES S, Gonzalez B, Ulloa O
    Redox traits characterize the organization of global microbial communities.
    Proc Natl Acad Sci U S A. 2019;116:3630-3635.
    PubMed     Abstract available


  196. NGO V, Chen Z, Zhang K, Whitaker JW, et al
    Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse.
    Proc Natl Acad Sci U S A. 2019;116:3668-3677.
    PubMed     Abstract available


  197. BUNNIK EM, Venkat A, Shao J, McGovern KE, et al
    Comparative 3D genome organization in apicomplexan parasites.
    Proc Natl Acad Sci U S A. 2019;116:3183-3192.
    PubMed     Abstract available


  198. PECK SC, Denger K, Burrichter A, Irwin SM, et al
    A glycyl radical enzyme enables hydrogen sulfide production by the human intestinal bacterium Bilophila wadsworthia.
    Proc Natl Acad Sci U S A. 2019;116:3171-3176.
    PubMed     Abstract available


  199. PHALAN BT, Northrup JM, Yang Z, Deal RL, et al
    Impacts of the Northwest Forest Plan on forest composition and bird populations.
    Proc Natl Acad Sci U S A. 2019;116:3322-3327.
    PubMed     Abstract available


  200. GEISSNER A, Reinhardt A, Rademacher C, Johannssen T, et al
    Microbe-focused glycan array screening platform.
    Proc Natl Acad Sci U S A. 2019;116:1958-1967.
    PubMed     Abstract available


  201. ZHAO T, Schranz ME
    Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes.
    Proc Natl Acad Sci U S A. 2019;116:2165-2174.
    PubMed     Abstract available


  202. WONG MM, Bhaskara GB, Wen TN, Lin WD, et al
    Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook-Like10 phosphorylation required for stress growth regulation.
    Proc Natl Acad Sci U S A. 2019;116:2354-2363.
    PubMed     Abstract available


  203. FUDENBERG G, Pollard KS
    Chromatin features constrain structural variation across evolutionary timescales.
    Proc Natl Acad Sci U S A. 2019;116:2175-2180.
    PubMed     Abstract available


  204. LAI YT, Yeung CKL, Omland KE, Pang EL, et al
    Standing genetic variation as the predominant source for adaptation of a songbird.
    Proc Natl Acad Sci U S A. 2019;116:2152-2157.
    PubMed     Abstract available


  205. STRENKERT D, Schmollinger S, Gallaher SD, Salome PA, et al
    Multiomics resolution of molecular events during a day in the life of Chlamydomonas.
    Proc Natl Acad Sci U S A. 2019;116:2374-2383.
    PubMed     Abstract available


  206. GOMEZ-VALERO L, Rusniok C, Carson D, Mondino S, et al
    More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells.
    Proc Natl Acad Sci U S A. 2019;116:2265-2273.
    PubMed     Abstract available


  207. CHEN N, Juric I, Cosgrove EJ, Bowman R, et al
    Allele frequency dynamics in a pedigreed natural population.
    Proc Natl Acad Sci U S A. 2019;116:2158-2164.
    PubMed     Abstract available


    January 2019
  208. FELDMAN M, Vershinin Z, Goliand I, Elia N, et al
    The methyltransferase SETD6 regulates Mitotic progression through PLK1 methylation.
    Proc Natl Acad Sci U S A. 2019;116:1235-1240.
    PubMed     Abstract available


  209. HORNS F, Vollmers C, Dekker CL, Quake SR, et al
    Signatures of selection in the human antibody repertoire: Selective sweeps, competing subclones, and neutral drift.
    Proc Natl Acad Sci U S A. 2019;116:1261-1266.
    PubMed     Abstract available


  210. SNYDER-MACKLER N, Sanz J, Kohn JN, Voyles T, et al
    Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques.
    Proc Natl Acad Sci U S A. 2019;116:1219-1228.
    PubMed     Abstract available


  211. VAN DORP L, Lowes S, Weigel JL, Ansari-Pour N, et al
    Genetic legacy of state centralization in the Kuba Kingdom of the Democratic Republic of the Congo.
    Proc Natl Acad Sci U S A. 2019;116:593-598.
    PubMed     Abstract available


  212. LEUNG KK, Nguyen A, Shi T, Tang L, et al
    Multiomics of azacitidine-treated AML cells reveals variable and convergent targets that remodel the cell-surface proteome.
    Proc Natl Acad Sci U S A. 2019;116:695-700.
    PubMed     Abstract available


  213. BAYRAKTAR EC, Baudrier L, Ozerdem C, Lewis CA, et al
    MITO-Tag Mice enable rapid isolation and multimodal profiling of mitochondria from specific cell types in vivo.
    Proc Natl Acad Sci U S A. 2019;116:303-312.
    PubMed     Abstract available


    December 2018
  214. OH YM, Mahar M, Ewan EE, Leahy KM, et al
    Epigenetic regulator UHRF1 inactivates REST and growth suppressor gene expression via DNA methylation to promote axon regeneration.
    Proc Natl Acad Sci U S A. 2018;115:E12417-E12426.
    PubMed     Abstract available


  215. LIN M, Siford RL, Martin AR, Nakagome S, et al
    Rapid evolution of a skin-lightening allele in southern African KhoeSan.
    Proc Natl Acad Sci U S A. 2018;115:13324-13329.
    PubMed     Abstract available


  216. DIXON G, Liao Y, Bay LK, Matz MV, et al
    Role of gene body methylation in acclimatization and adaptation in a basal metazoan.
    Proc Natl Acad Sci U S A. 2018;115:13342-13346.
    PubMed     Abstract available


  217. TOKUDA G, Mikaelyan A, Fukui C, Matsuura Y, et al
    Fiber-associated spirochetes are major agents of hemicellulose degradation in the hindgut of wood-feeding higher termites.
    Proc Natl Acad Sci U S A. 2018;115:E11996-E12004.
    PubMed     Abstract available


  218. CARPENTER BL, Zhou W, Madaj Z, DeWitt AK, et al
    Mother-child transmission of epigenetic information by tunable polymorphic imprinting.
    Proc Natl Acad Sci U S A. 2018;115:E11970-E11977.
    PubMed     Abstract available


  219. KAMELGARN M, Chen J, Kuang L, Jin H, et al
    ALS mutations of FUS suppress protein translation and disrupt the regulation of nonsense-mediated decay.
    Proc Natl Acad Sci U S A. 2018;115:E11904-E11913.
    PubMed     Abstract available


  220. CROMBIE AT, Larke-Mejia NL, Emery H, Dawson R, et al
    Poplar phyllosphere harbors disparate isoprene-degrading bacteria.
    Proc Natl Acad Sci U S A. 2018;115:13081-13086.
    PubMed     Abstract available


  221. SONG H, Ou W, Feng Y, Zhang J, et al
    Disparate impact on CD4 T cell count by two distinct HIV-1 phylogenetic clusters from the same clade.
    Proc Natl Acad Sci U S A. 2018 Dec 17. pii: 1814714116.
    PubMed     Abstract available


  222. HAMDAN FH, Johnsen SA
    DeltaNp63-dependent super enhancers define molecular identity in pancreatic cancer by an interconnected transcription factor network.
    Proc Natl Acad Sci U S A. 2018 Dec 12. pii: 1812915116.
    PubMed     Abstract available


  223. MILLER NT, Burnap RL
    Navigating the fitness landscape using multiallele genome editing.
    Proc Natl Acad Sci U S A. 2018;115:12547-12549.
    PubMed    


  224. UNGERER J, Wendt KE, Hendry JI, Maranas CD, et al
    Comparative genomics reveals the molecular determinants of rapid growth of the cyanobacterium Synechococcus elongatus UTEX 2973.
    Proc Natl Acad Sci U S A. 2018;115:E11761-E11770.
    PubMed     Abstract available


    November 2018
  225. MATSUNUMA R, Chan DW, Kim BJ, Singh P, et al
    DPYSL3 modulates mitosis, migration, and epithelial-to-mesenchymal transition in claudin-low breast cancer.
    Proc Natl Acad Sci U S A. 2018 Nov 29. pii: 1810598115.
    PubMed     Abstract available


  226. BERGEY CM, Lopez M, Harrison GF, Patin E, et al
    Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers.
    Proc Natl Acad Sci U S A. 2018;115:E11256-E11263.
    PubMed     Abstract available


  227. LOELL K, Nanda V
    Marginal protein stability drives subcellular proteome isoelectric point.
    Proc Natl Acad Sci U S A. 2018;115:11778-11783.
    PubMed     Abstract available


  228. KERSTEN RD, Weng JK
    Gene-guided discovery and engineering of branched cyclic peptides in plants.
    Proc Natl Acad Sci U S A. 2018;115:E10961-E10969.
    PubMed     Abstract available


  229. LIN YC, Wang J, Delhomme N, Schiffthaler B, et al
    Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen.
    Proc Natl Acad Sci U S A. 2018;115:E10970-E10978.
    PubMed     Abstract available


  230. BAUSCH-FLUCK D, Goldmann U, Muller S, van Oostrum M, et al
    The in silico human surfaceome.
    Proc Natl Acad Sci U S A. 2018;115:E10988-E10997.
    PubMed     Abstract available


    October 2018
  231. COSTA DL, Yetter N, DeSomer H
    Intergenerational transmission of paternal trauma among US Civil War ex-POWs.
    Proc Natl Acad Sci U S A. 2018;115:11215-11220.
    PubMed     Abstract available


  232. MARIE R, Pedersen JN, Baerlocher L, Koprowska K, et al
    Single-molecule DNA-mapping and whole-genome sequencing of individual cells.
    Proc Natl Acad Sci U S A. 2018;115:11192-11197.
    PubMed     Abstract available


  233. PAERL RW, Sundh J, Tan D, Svenningsen SL, et al
    Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability.
    Proc Natl Acad Sci U S A. 2018;115:E10447-E10456.
    PubMed     Abstract available


  234. KOKOTOS AC, Peltier J, Davenport EC, Trost M, et al
    Activity-dependent bulk endocytosis proteome reveals a key presynaptic role for the monomeric GTPase Rab11.
    Proc Natl Acad Sci U S A. 2018;115:E10177-E10186.
    PubMed     Abstract available


  235. RIVAS-CARRILLO SD, Pettersson ME, Rubin CJ, Jern P, et al
    Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations.
    Proc Natl Acad Sci U S A. 2018;115:11012-11017.
    PubMed     Abstract available


  236. WANG K, Yang Z, Qing D, Ren F, et al
    Quantitative and functional posttranslational modification proteomics reveals that TREPH1 plays a role in plant touch-delayed bolting.
    Proc Natl Acad Sci U S A. 2018;115:E10265-E10274.
    PubMed     Abstract available


  237. PUENTE-SANCHEZ F, Arce-Rodriguez A, Oggerin M, Garcia-Villadangos M, et al
    Viable cyanobacteria in the deep continental subsurface.
    Proc Natl Acad Sci U S A. 2018;115:10702-10707.
    PubMed     Abstract available


  238. ROHRBACK S, April C, Kaper F, Rivera RR, et al
    Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing.
    Proc Natl Acad Sci U S A. 2018;115:10804-10809.
    PubMed     Abstract available


  239. DOW M, Pyke RM, Tsui BY, Alexandrov LB, et al
    Integrative genomic analysis of mouse and human hepatocellular carcinoma.
    Proc Natl Acad Sci U S A. 2018;115:E9879-E9888.
    PubMed     Abstract available


  240. GUELLIL M, Kersten O, Namouchi A, Bauer EL, et al
    Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia.
    Proc Natl Acad Sci U S A. 2018;115:10422-10427.
    PubMed     Abstract available


  241. WANG X, Pipes L, Trut LN, Herbeck Y, et al
    Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes).
    Proc Natl Acad Sci U S A. 2018;115:10398-10403.
    PubMed     Abstract available


    September 2018
  242. YARRINGTON RM, Verma S, Schwartz S, Trautman JK, et al
    Nucleosomes inhibit target cleavage by CRISPR-Cas9 in vivo.
    Proc Natl Acad Sci U S A. 2018;115:9351-9358.
    PubMed     Abstract available


  243. CHU B, He A, Tian Y, He W, et al
    Photoaffinity-engineered protein scaffold for systematically exploring native phosphotyrosine signaling complexes in tumor samples.
    Proc Natl Acad Sci U S A. 2018;115:E8863-E8872.
    PubMed     Abstract available


  244. GASSAWAY BM, Petersen MC, Surovtseva YV, Barber KW, et al
    PKCepsilon contributes to lipid-induced insulin resistance through cross talk with p70S6K and through previously unknown regulators of insulin signaling.
    Proc Natl Acad Sci U S A. 2018;115:E8996-E9005.
    PubMed     Abstract available


  245. TEREKHOV SS, Smirnov IV, Malakhova MV, Samoilov AE, et al
    Ultrahigh-throughput functional profiling of microbiota communities.
    Proc Natl Acad Sci U S A. 2018;115:9551-9556.
    PubMed     Abstract available


    August 2018
  246. GEORGE RJ, Plog S, Watson AS, Schmidt KL, et al
    Archaeogenomic evidence from the southwestern US points to a pre-Hispanic scarlet macaw breeding colony.
    Proc Natl Acad Sci U S A. 2018;115:8740-8745.
    PubMed     Abstract available


  247. PATAKI CI, Rodrigues J, Zhang L, Qian J, et al
    Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial alpha-helical membrane anchors.
    Proc Natl Acad Sci U S A. 2018;115:E8172-E8180.
    PubMed     Abstract available


  248. SHIN JW
    Squeezing cells through the epigenetic machinery.
    Proc Natl Acad Sci U S A. 2018;115:8472-8474.
    PubMed    


  249. SEVERO MS, Landry JJM, Lindquist RL, Goosmann C, et al
    Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging.
    Proc Natl Acad Sci U S A. 2018;115:E7568-E7577.
    PubMed     Abstract available


    July 2018
  250. HAZZI NA, Moreno JS, Ortiz-Movliav C, Palacio RD, et al
    Biogeographic regions and events of isolation and diversification of the endemic biota of the tropical Andes.
    Proc Natl Acad Sci U S A. 2018;115:7985-7990.
    PubMed     Abstract available


    June 2018
  251. SCAIEWICZ A, Levitt M
    Unique function words characterize genomic proteins.
    Proc Natl Acad Sci U S A. 2018;115:6703-6708.
    PubMed     Abstract available


  252. FREGEL R, Mendez FL, Bokbot Y, Martin-Socas D, et al
    Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe.
    Proc Natl Acad Sci U S A. 2018;115:6774-6779.
    PubMed     Abstract available


  253. VICKERS AJ
    Pharmacogenomics of antioxidant supplementation to prevent age-related macular degeneration.
    Proc Natl Acad Sci U S A. 2018;115:E5639.
    PubMed    


  254. VAVVAS DG, Small KW, Awh C, Zanke BW, et al
    Reply to Vickers: Pharmacogenetics and progression to neovascular age-related macular degeneration-Evidence supporting practice change.
    Proc Natl Acad Sci U S A. 2018;115:E5640-E5641.
    PubMed    


  255. NYERGES A, Csorgo B, Draskovits G, Kintses B, et al
    Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance.
    Proc Natl Acad Sci U S A. 2018;115:E5726-E5735.
    PubMed     Abstract available


  256. KLEINER M, Dong X, Hinzke T, Wippler J, et al
    Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities.
    Proc Natl Acad Sci U S A. 2018;115:E5576-E5584.
    PubMed     Abstract available


  257. GYORFFY BA, Kun J, Torok G, Bulyaki E, et al
    Local apoptotic-like mechanisms underlie complement-mediated synaptic pruning.
    Proc Natl Acad Sci U S A. 2018;115:6303-6308.
    PubMed     Abstract available


  258. HUGHES LC, Orti G, Huang Y, Sun Y, et al
    Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data.
    Proc Natl Acad Sci U S A. 2018;115:6249-6254.
    PubMed     Abstract available


  259. GABRIELSEN P
    QnAs with Joanne Chory.
    Proc Natl Acad Sci U S A. 2018;115:6102-6103.
    PubMed    


  260. DAI J, Liang K, Zhao S, Jia W, et al
    Chemoproteomics reveals baicalin activates hepatic CPT1 to ameliorate diet-induced obesity and hepatic steatosis.
    Proc Natl Acad Sci U S A. 2018 Jun 11. pii: 1801745115.
    PubMed     Abstract available


  261. NAIR P
    QnAs with Caroline Dean.
    Proc Natl Acad Sci U S A. 2018;115:5824-5826.
    PubMed    


  262. RADI R
    Oxygen radicals, nitric oxide, and peroxynitrite: Redox pathways in molecular medicine.
    Proc Natl Acad Sci U S A. 2018;115:5839-5848.
    PubMed     Abstract available


  263. TOLEMAN CA, Schumacher MA, Yu SH, Zeng W, et al
    Structural basis of O-GlcNAc recognition by mammalian 14-3-3 proteins.
    Proc Natl Acad Sci U S A. 2018;115:5956-5961.
    PubMed     Abstract available


  264. PARK J, Lim CJ, Shen M, Park HJ, et al
    Epigenetic switch from repressive to permissive chromatin in response to cold stress.
    Proc Natl Acad Sci U S A. 2018;115:E5400-E5409.
    PubMed     Abstract available


  265. SRIVASTAVA G, Mehrotra RC, Dilcher DL
    Paleocene Ipomoea (Convolvulaceae) from India with implications for an East Gondwana origin of Convolvulaceae.
    Proc Natl Acad Sci U S A. 2018;115:6028-6033.
    PubMed     Abstract available


  266. PORTER LL, Looger LL
    Extant fold-switching proteins are widespread.
    Proc Natl Acad Sci U S A. 2018;115:5968-5973.
    PubMed     Abstract available


  267. ANTONELLI A, Zizka A, Carvalho FA, Scharn R, et al
    Amazonia is the primary source of Neotropical biodiversity.
    Proc Natl Acad Sci U S A. 2018;115:6034-6039.
    PubMed     Abstract available


    May 2018
  268. WANG GD, Zhang BL, Zhou WW, Li YX, et al
    Selection and environmental adaptation along a path to speciation in the Tibetan frog Nanorana parkeri.
    Proc Natl Acad Sci U S A. 2018;115:E5056-E5065.
    PubMed     Abstract available


  269. SHEN X, Shen S, Li J, Hu Q, et al
    IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts.
    Proc Natl Acad Sci U S A. 2018;115:E4767-E4776.
    PubMed     Abstract available


  270. ZHAO J, Lupino K, Wilkins BJ, Qiu C, et al
    Genomic integration of ERRgamma-HNF1beta regulates renal bioenergetics and prevents chronic kidney disease.
    Proc Natl Acad Sci U S A. 2018;115:E4910-E4919.
    PubMed     Abstract available


  271. CHAMPER J, Liu J, Oh SY, Reeves R, et al
    Reducing resistance allele formation in CRISPR gene drive.
    Proc Natl Acad Sci U S A. 2018;115:5522-5527.
    PubMed     Abstract available


  272. VAN VELZEN R, Holmer R, Bu F, Rutten L, et al
    Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses.
    Proc Natl Acad Sci U S A. 2018;115:E4700-E4709.
    PubMed     Abstract available


  273. WANG J, Schultz PG, Johnson KA
    Mechanistic studies of a small-molecule modulator of SMN2 splicing.
    Proc Natl Acad Sci U S A. 2018;115:E4604-E4612.
    PubMed     Abstract available


  274. WANG X, Chen ZH, Yang C, Zhang X, et al
    Genomic adaptation to drought in wild barley is driven by edaphic natural selection at the Tabigha Evolution Slope.
    Proc Natl Acad Sci U S A. 2018;115:5223-5228.
    PubMed     Abstract available


  275. CLEVES PA, Strader ME, Bay LK, Pringle JR, et al
    CRISPR/Cas9-mediated genome editing in a reef-building coral.
    Proc Natl Acad Sci U S A. 2018;115:5235-5240.
    PubMed     Abstract available


  276. DOCTROW B
    QnAs with Howard Y. Chang.
    Proc Natl Acad Sci U S A. 2018;115:4805-4806.
    PubMed    


  277. AHMED F
    QnAs with Donald Geman.
    Proc Natl Acad Sci U S A. 2018;115:4528-4529.
    PubMed    


  278. DINALANKARA W, Ke Q, Xu Y, Ji L, et al
    Digitizing omics profiles by divergence from a baseline.
    Proc Natl Acad Sci U S A. 2018;115:4545-4552.
    PubMed     Abstract available


    April 2018
  279. HEO S, Diering GH, Na CH, Nirujogi RS, et al
    Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover.
    Proc Natl Acad Sci U S A. 2018;115:E3827-E3836.
    PubMed     Abstract available


  280. PONCE DE LEON MS, Koesbardiati T, Weissmann JD, Milella M, et al
    Human bony labyrinth is an indicator of population history and dispersal from Africa.
    Proc Natl Acad Sci U S A. 2018;115:4128-4133.
    PubMed     Abstract available


  281. NTAI I, Fornelli L, DeHart CJ, Hutton JE, et al
    Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk.
    Proc Natl Acad Sci U S A. 2018;115:4140-4145.
    PubMed     Abstract available


  282. DOOLITTLE WF, Inkpen SA
    Processes and patterns of interaction as units of selection: An introduction to ITSNTS thinking.
    Proc Natl Acad Sci U S A. 2018;115:4006-4014.
    PubMed     Abstract available


  283. BIRZU G, Hallatschek O, Korolev KS
    Fluctuations uncover a distinct class of traveling waves.
    Proc Natl Acad Sci U S A. 2018;115:E3645-E3654.
    PubMed     Abstract available


  284. MOLLER S, du Plessis L, Stadler T
    Impact of the tree prior on estimating clock rates during epidemic outbreaks.
    Proc Natl Acad Sci U S A. 2018;115:4200-4205.
    PubMed     Abstract available


  285. GRUBER A, Hornburg D, Antonin M, Krahmer N, et al
    Molecular and structural architecture of polyQ aggregates in yeast.
    Proc Natl Acad Sci U S A. 2018;115:E3446-E3453.
    PubMed     Abstract available


  286. IMAMURA K, Yoshitane H, Hattori K, Yamaguchi M, et al
    ASK family kinases mediate cellular stress and redox signaling to circadian clock.
    Proc Natl Acad Sci U S A. 2018;115:3646-3651.
    PubMed     Abstract available


  287. CHAVEZ A, Pruitt BW, Tuttle M, Shapiro RS, et al
    Precise Cas9 targeting enables genomic mutation prevention.
    Proc Natl Acad Sci U S A. 2018;115:3669-3673.
    PubMed     Abstract available


  288. OROZCO CA, Martinez-Bosch N, Guerrero PE, Vinaixa J, et al
    Targeting galectin-1 inhibits pancreatic cancer progression by modulating tumor-stroma crosstalk.
    Proc Natl Acad Sci U S A. 2018 Apr 3. pii: 1722434115.
    PubMed     Abstract available


    March 2018
  289. MOBADERSANY P, Yousefi S, Amgad M, Gutman DA, et al
    Predicting cancer outcomes from histology and genomics using convolutional networks.
    Proc Natl Acad Sci U S A. 2018;115:E2970-E2979.
    PubMed     Abstract available


  290. TONG T, Chen S, Wang L, Tang Y, et al
    Occurrence, evolution, and functions of DNA phosphorothioate epigenetics in bacteria.
    Proc Natl Acad Sci U S A. 2018;115:E2988-E2996.
    PubMed     Abstract available


  291. DISSELHORST JA, Krueger MA, Ud-Dean SMM, Bezrukov I, et al
    Linking imaging to omics utilizing image-guided tissue extraction.
    Proc Natl Acad Sci U S A. 2018;115:E2980-E2987.
    PubMed     Abstract available


  292. VAN GINKEL J, Filius M, Szczepaniak M, Tulinski P, et al
    Single-molecule peptide fingerprinting.
    Proc Natl Acad Sci U S A. 2018;115:3338-3343.
    PubMed     Abstract available


  293. VALDIOSERA C, Gunther T, Vera-Rodriguez JC, Urena I, et al
    Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia.
    Proc Natl Acad Sci U S A. 2018;115:3428-3433.
    PubMed     Abstract available


  294. VEERAMAH KR, Rott A, Gross M, van Dorp L, et al
    Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria.
    Proc Natl Acad Sci U S A. 2018;115:3494-3499.
    PubMed     Abstract available


  295. ARREGUI S, Iglesias MJ, Samper S, Marinova D, et al
    Data-driven model for the assessment of Mycobacterium tuberculosis transmission in evolving demographic structures.
    Proc Natl Acad Sci U S A. 2018 Mar 21. pii: 1720606115.
    PubMed     Abstract available


  296. WOO M
    Inner Workings: Better sequencing tech may help keep planets clean.
    Proc Natl Acad Sci U S A. 2018;115:2542-2544.
    PubMed    


  297. PALKOPOULOU E, Lipson M, Mallick S, Nielsen S, et al
    A comprehensive genomic history of extinct and living elephants.
    Proc Natl Acad Sci U S A. 2018;115:E2566-E2574.
    PubMed     Abstract available


  298. XIAO Q, Ludwig AK, Romano C, Buzzacchera I, et al
    Exploring functional pairing between surface glycoconjugates and human galectins using programmable glycodendrimersomes.
    Proc Natl Acad Sci U S A. 2018;115:E2509-E2518.
    PubMed     Abstract available


  299. POLLOCK SB, Hu A, Mou Y, Martinko AJ, et al
    Highly multiplexed and quantitative cell-surface protein profiling using genetically barcoded antibodies.
    Proc Natl Acad Sci U S A. 2018;115:2836-2841.
    PubMed     Abstract available


  300. FORESTER CM, Zhao Q, Phillips NJ, Urisman A, et al
    Revealing nascent proteomics in signaling pathways and cell differentiation.
    Proc Natl Acad Sci U S A. 2018;115:2353-2358.
    PubMed     Abstract available


  301. SCHROEDER H, Sikora M, Gopalakrishnan S, Cassidy LM, et al
    Origins and genetic legacies of the Caribbean Taino.
    Proc Natl Acad Sci U S A. 2018;115:2341-2346.
    PubMed     Abstract available


  302. BELIVEAU BJ, Kishi JY, Nir G, Sasaki HM, et al
    OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.
    Proc Natl Acad Sci U S A. 2018;115:E2183-E2192.
    PubMed     Abstract available


  303. RYAN SF, Deines JM, Scriber JM, Pfrender ME, et al
    Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling.
    Proc Natl Acad Sci U S A. 2018;115:E2284-E2291.
    PubMed     Abstract available


    February 2018
  304. KARDOS M, Nietlisbach P, Hedrick PW
    How should we compare different genomic estimates of the strength of inbreeding depression?
    Proc Natl Acad Sci U S A. 2018 Feb 21. pii: 1714475115.
    PubMed    


  305. MORI T, Cahn JKB, Wilson MC, Meoded RA, et al
    Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.
    Proc Natl Acad Sci U S A. 2018;115:1718-1723.
    PubMed     Abstract available


  306. PHILLIPS KP, Cable J, Mohammed RS, Herdegen-Radwan M, et al
    Immunogenetic novelty confers a selective advantage in host-pathogen coevolution.
    Proc Natl Acad Sci U S A. 2018;115:1552-1557.
    PubMed     Abstract available


  307. DUCATI RG, Namanja-Magliano HA, Harijan RK, Fajardo JE, et al
    Genetic resistance to purine nucleoside phosphorylase inhibition in Plasmodium falciparum.
    Proc Natl Acad Sci U S A. 2018 Feb 12. pii: 1525670115.
    PubMed     Abstract available


  308. RAM Y, Liberman U, Feldman MW
    Evolution of vertical and oblique transmission under fluctuating selection.
    Proc Natl Acad Sci U S A. 2018;115:E1174-E1183.
    PubMed     Abstract available


    January 2018
  309. PALIOU C, Andrey G
    Large genomic insertion at the Shh locus results in hammer toes through enhancer adoption.
    Proc Natl Acad Sci U S A. 2018;115:839-841.
    PubMed    


  310. BRADSHAW WE, Burkhart J, Colbourne JK, Borowczak R, et al
    Evolutionary transition from blood feeding to obligate nonbiting in a mosquito.
    Proc Natl Acad Sci U S A. 2018;115:1009-1014.
    PubMed     Abstract available


  311. LAENCINA L, Dubois V, Le Moigne V, Viljoen A, et al
    Identification of genes required for Mycobacterium abscessus growth in vivo with a prominent role of the ESX-4 locus.
    Proc Natl Acad Sci U S A. 2018;115:E1002-E1011.
    PubMed     Abstract available


  312. ZHANG Y, Harris CJ, Liu Q, Liu W, et al
    Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis.
    Proc Natl Acad Sci U S A. 2018;115:E1069-E1074.
    PubMed     Abstract available


  313. JALILI R, Horecka J, Swartz JR, Davis RW, et al
    Streamlined circular proximity ligation assay provides high stringency and compatibility with low-affinity antibodies.
    Proc Natl Acad Sci U S A. 2018;115:E925-E933.
    PubMed     Abstract available


  314. JENNESS C, Giunta S, Muller MM, Kimura H, et al
    HELLS and CDCA7 comprise a bipartite nucleosome remodeling complex defective in ICF syndrome.
    Proc Natl Acad Sci U S A. 2018;115:E876-E885.
    PubMed     Abstract available


  315. RAVINDRAN S
    Profile of Scott W. Lowe.
    Proc Natl Acad Sci U S A. 2018;115:630-632.
    PubMed    


  316. EDIE SM, Jablonski D, Valentine JW
    Contrasting responses of functional diversity to major losses in taxonomic diversity.
    Proc Natl Acad Sci U S A. 2018;115:732-737.
    PubMed     Abstract available


  317. DUNN CW, Zapata F, Munro C, Siebert S, et al
    Pairwise comparisons across species are problematic when analyzing functional genomic data.
    Proc Natl Acad Sci U S A. 2018;115:E409-E417.
    PubMed     Abstract available


  318. BERGAUER K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, et al
    Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics.
    Proc Natl Acad Sci U S A. 2018;115:E400-E408.
    PubMed     Abstract available


  319. MENACHERY VD, Schafer A, Burnum-Johnson KE, Mitchell HD, et al
    MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape.
    Proc Natl Acad Sci U S A. 2018 Jan 16. pii: 1706928115.
    PubMed     Abstract available


  320. VASYLYEVA TI, Liulchuk M, Friedman SR, Sazonova I, et al
    Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.
    Proc Natl Acad Sci U S A. 2018 Jan 16. pii: 1701447115.
    PubMed     Abstract available


  321. FIGUEROA IA, Barnum TP, Somasekhar PY, Carlstrom CI, et al
    Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway.
    Proc Natl Acad Sci U S A. 2018;115:E92-E101.
    PubMed     Abstract available


    December 2017
  322. CHEN B, Jiang L, Zhong ML, Li JF, et al
    Identification of fusion genes and characterization of transcriptome features in T-cell acute lymphoblastic leukemia.
    Proc Natl Acad Sci U S A. 2017 Dec 26. pii: 1717125115.
    PubMed     Abstract available


  323. SU Y, Wei W, Robert L, Xue M, et al
    Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance.
    Proc Natl Acad Sci U S A. 2017 Dec 11. pii: 1712064115.
    PubMed     Abstract available


    November 2017
  324. STRAUSS L, Stegger M, Akpaka PE, Alabi A, et al
    Origin, evolution, and global transmission of community-acquired Staphylococcus aureus ST8.
    Proc Natl Acad Sci U S A. 2017 Nov 20. pii: 201702472.
    PubMed     Abstract available


    October 2017
  325. KANJEE U, Gruring C, Chaand M, Lin KM, et al
    CRISPR/Cas9 knockouts reveal genetic interaction between strain-transcendent erythrocyte determinants of Plasmodium falciparum invasion.
    Proc Natl Acad Sci U S A. 2017;114:E9356-E9365.
    PubMed     Abstract available


  326. XUE X, Bredell BX, Anderson ER, Martin A, et al
    Quantitative proteomics identifies STEAP4 as a critical regulator of mitochondrial dysfunction linking inflammation and colon cancer.
    Proc Natl Acad Sci U S A. 2017 Oct 23. pii: 201712946.
    PubMed     Abstract available


    September 2017
  327. OLDFIELD LM, Grzesik P, Voorhies AA, Alperovich N, et al
    Genome-wide engineering of an infectious clone of herpes simplex virus type 1 using synthetic genomics assembly methods.
    Proc Natl Acad Sci U S A. 2017 Sep 19. pii: 201700534.
    PubMed     Abstract available


  328. BERER K, Gerdes LA, Cekanaviciute E, Jia X, et al
    Gut microbiota from multiple sclerosis patients enables spontaneous autoimmune encephalomyelitis in mice.
    Proc Natl Acad Sci U S A. 2017 Sep 11. pii: 201711233.
    PubMed     Abstract available


    July 2017
  329. DEFRANCESCO AS, Masloboeva N, Syed AK, DeLoughery A, et al
    Genome-wide screen for genes involved in eDNA release during biofilm formation by Staphylococcus aureus.
    Proc Natl Acad Sci U S A. 2017 Jul 3. pii: 201704544.
    PubMed     Abstract available


    June 2017
  330. GOCHEVA V, Naba A, Bhutkar A, Guardia T, et al
    Quantitative proteomics identify Tenascin-C as a promoter of lung cancer progression and contributor to a signature prognostic of patient survival.
    Proc Natl Acad Sci U S A. 2017 Jun 26. pii: 201707054.
    PubMed     Abstract available


    May 2017
  331. MCKNIGHT KL, Xie L, Gonzalez-Lopez O, Rivera-Serrano EE, et al
    Protein composition of the hepatitis A virus quasi-envelope.
    Proc Natl Acad Sci U S A. 2017 May 10. pii: 201619519.
    PubMed     Abstract available


    March 2017
  332. CHEN IH, Xue L, Hsu CC, Paez JS, et al
    Phosphoproteins in extracellular vesicles as candidate markers for breast cancer.
    Proc Natl Acad Sci U S A. 2017 Mar 7. pii: 201618088.
    PubMed     Abstract available


    February 2017
  333. ZEITELHOFER M, Adzemovic MZ, Gomez-Cabrero D, Bergman P, et al
    Functional genomics analysis of vitamin D effects on CD4+ T cells in vivo in experimental autoimmune encephalomyelitis .
    Proc Natl Acad Sci U S A. 2017 Feb 14. pii: 201615783.
    PubMed     Abstract available


    October 2016
  334. XU Z, Robitaille AM, Berndt JD, Davidson KC, et al
    Wnt/beta-catenin signaling promotes self-renewal and inhibits the primed state transition in naive human embryonic stem cells.
    Proc Natl Acad Sci U S A. 2016 Oct 3. pii: 201613849.
    PubMed     Abstract available


    May 2016
  335. BERGEY CM, Phillips-Conroy JE, Disotell TR, Jolly CJ, et al
    Dopamine pathway is highly diverged in primate species that differ markedly in social behavior.
    Proc Natl Acad Sci U S A. 2016;113:6178-81.
    PubMed     Abstract available


  336. STEELAND S, Timmermans S, Van Ryckeghem S, Hulpiau P, et al
    Efficient analysis of mouse genome sequences reveal many nonsense variants.
    Proc Natl Acad Sci U S A. 2016;113:5670-5.
    PubMed     Abstract available


  337. DAS S, Lindemann C, Young BC, Muller J, et al
    Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation.
    Proc Natl Acad Sci U S A. 2016 May 16. pii: 201520255.
    PubMed     Abstract available


  338. CHEN Z, Miao F, Paterson AD, Lachin JM, et al
    Epigenomic profiling reveals an association between persistence of DNA methylation and metabolic memory in the DCCT/EDIC type 1 diabetes cohort.
    Proc Natl Acad Sci U S A. 2016 May 9. pii: 201603712.
    PubMed     Abstract available


    April 2016
  339. WRIGHT NA, Steadman DW, Witt CC
    Predictable evolution toward flightlessness in volant island birds.
    Proc Natl Acad Sci U S A. 2016;113:4765-70.
    PubMed     Abstract available


  340. RAPOSO DO AMARAL F, Edwards SV, Pie MR, Jennings WB, et al
    The "Atlantis Forest hypothesis" does not explain Atlantic Forest phylogeography.
    Proc Natl Acad Sci U S A. 2016;113:E2097-8.
    PubMed    


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