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Articles published in Proc Natl Acad Sci U S A

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    December 2022
  1. TABILAS C, Iu DS, Daly CWP, Yee Mon KJ, et al
    Early microbial exposure shapes adult immunity by altering CD8+ T cell development.
    Proc Natl Acad Sci U S A. 2022;119:e2212548119.
    PubMed     Abstract available


    November 2022
  2. ZOLOTAREV N, Bayer M, Grosschedl R
    EBF1 is continuously required for stabilizing local chromatin accessibility in pro-B cells.
    Proc Natl Acad Sci U S A. 2022;119:e2210595119.
    PubMed     Abstract available


  3. BARBIERI C, Blasi DE, Arango-Isaza E, Sotiropoulos AG, et al
    A global analysis of matches and mismatches between human genetic and linguistic histories.
    Proc Natl Acad Sci U S A. 2022;119:e2122084119.
    PubMed     Abstract available


  4. KOLESKE ML, McInnes G, Brown JEH, Thomas N, et al
    Functional genomics of OCTN2 variants informs protein-specific variant effect predictor for Carnitine Transporter Deficiency.
    Proc Natl Acad Sci U S A. 2022;119:e2210247119.
    PubMed     Abstract available


  5. SCHMITZ LL, Duque V
    In utero exposure to the Great Depression is reflected in late-life epigenetic aging signatures.
    Proc Natl Acad Sci U S A. 2022;119:e2208530119.
    PubMed     Abstract available


  6. GIERUS L, Birand A, Bunting MD, Godahewa GI, et al
    Leveraging a natural murine meiotic drive to suppress invasive populations.
    Proc Natl Acad Sci U S A. 2022;119:e2213308119.
    PubMed     Abstract available


  7. ATMORE LM, Martinez-Garcia L, Makowiecki D, Andre C, et al
    Population dynamics of Baltic herring since the Viking Age revealed by ancient DNA and genomics.
    Proc Natl Acad Sci U S A. 2022;119:e2208703119.
    PubMed     Abstract available


  8. JAMALUDDIN MFB, Ghosh A, Ingle A, Mohammed R, et al
    Bovine and human endometrium-derived hydrogels support organoid culture from healthy and cancerous tissues.
    Proc Natl Acad Sci U S A. 2022;119:e2208040119.
    PubMed     Abstract available


    October 2022
  9. FALAHATI H, Wu Y, Feuerer V, Simon HG, et al
    Proximity proteomics of synaptopodin provides insight into the molecular composition of the spine apparatus of dendritic spines.
    Proc Natl Acad Sci U S A. 2022;119:e2203750119.
    PubMed     Abstract available


  10. HIROOKA S, Itabashi T, Ichinose TM, Onuma R, et al
    Life cycle and functional genomics of the unicellular red alga Galdieria for elucidating algal and plant evolution and industrial use.
    Proc Natl Acad Sci U S A. 2022;119:e2210665119.
    PubMed     Abstract available


  11. SCHRAGO CG
    Genomic basis of neotropical primate adaptations.
    Proc Natl Acad Sci U S A. 2022;119:e2213527119.
    PubMed    


  12. BANUELOS MM, Zavaleta YJA, Roldan A, Reyes RJ, et al
    Associations between forensic loci and expression levels of neighboring genes may compromise medical privacy.
    Proc Natl Acad Sci U S A. 2022;119:e2121024119.
    PubMed     Abstract available


  13. HOGG CJ, Belov K
    Reply to DeWoody et al.: Inequitable access to affordable sequencing limits the benefits from population genomic insights.
    Proc Natl Acad Sci U S A. 2022;119:e2211129119.
    PubMed    


  14. LI ML, Wang S, Xu P, Tian HY, et al
    Functional genomics analysis reveals the evolutionary adaptation and demographic history of pygmy lorises.
    Proc Natl Acad Sci U S A. 2022;119:e2123030119.
    PubMed     Abstract available


  15. ALAGOZ G, Molz B, Eising E, Schijven D, et al
    Using neuroimaging genomics to investigate the evolution of human brain structure.
    Proc Natl Acad Sci U S A. 2022;119:e2200638119.
    PubMed     Abstract available


  16. LI HZ, Yang K, Liao H, Lassen SB, et al
    Active antibiotic resistome in soils unraveled by single-cell isotope probing and targeted metagenomics.
    Proc Natl Acad Sci U S A. 2022;119:e2201473119.
    PubMed     Abstract available


  17. CIUFFA R, Uliana F, Mannion J, Mehnert M, et al
    Novel biochemical, structural, and systems insights into inflammatory signaling revealed by contextual interaction proteomics.
    Proc Natl Acad Sci U S A. 2022;119:e2117175119.
    PubMed     Abstract available


    September 2022
  18. BRENNAN RS, deMayo JA, Dam HG, Finiguerra M, et al
    Experimental evolution reveals the synergistic genomic mechanisms of adaptation to ocean warming and acidification in a marine copepod.
    Proc Natl Acad Sci U S A. 2022;119:e2201521119.
    PubMed     Abstract available


  19. DING DY, Li S, Narasimhan B, Tibshirani R, et al
    Cooperative learning for multiview analysis.
    Proc Natl Acad Sci U S A. 2022;119:e2202113119.
    PubMed     Abstract available


  20. SAUNDERS JK, McIlvin MR, Dupont CL, Kaul D, et al
    Microbial functional diversity across biogeochemical provinces in the central Pacific Ocean.
    Proc Natl Acad Sci U S A. 2022;119:e2200014119.
    PubMed     Abstract available


  21. PASCUAL-TORNER M, Carrero D, Perez-Silva JG, Alvarez-Puente D, et al
    Comparative genomics of mortal and immortal cnidarians unveils novel keys behind rejuvenation.
    Proc Natl Acad Sci U S A. 2022;119:e2118763119.
    PubMed     Abstract available


  22. LEBEDIN M, Foglierini M, Khorkova S, Vazquez Garcia C, et al
    Different classes of genomic inserts contribute to human antibody diversity.
    Proc Natl Acad Sci U S A. 2022;119:e2205470119.
    PubMed     Abstract available


  23. HLEDIK M, Barton N, Tkacik G
    Accumulation and maintenance of information in evolution.
    Proc Natl Acad Sci U S A. 2022;119:e2123152119.
    PubMed     Abstract available


    August 2022
  24. DEWOODY JA, Jeon JY, Bickham JW, Heenkenda EJ, et al
    The Threatened Species Imperative: Conservation assessments would benefit from population genomic insights.
    Proc Natl Acad Sci U S A. 2022;119:e2210685119.
    PubMed    


  25. FELDMAN HC, Merlini E, Guijas C, DeMeester KE, et al
    Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domain.
    Proc Natl Acad Sci U S A. 2022;119:e2208457119.
    PubMed     Abstract available


  26. BYRNE H, Webster TH, Brosnan SF, Izar P, et al
    Signatures of adaptive evolution in platyrrhine primate genomes.
    Proc Natl Acad Sci U S A. 2022;119:e2116681119.
    PubMed     Abstract available


  27. ALVES JM, Carneiro M, Day JP, Welch JJ, et al
    A single introduction of wild rabbits triggered the biological invasion of Australia.
    Proc Natl Acad Sci U S A. 2022;119:e2122734119.
    PubMed     Abstract available


  28. MOCK F, Kretschmer F, Kriese A, Bocker S, et al
    Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks.
    Proc Natl Acad Sci U S A. 2022;119:e2122636119.
    PubMed     Abstract available


  29. TROWBRIDGE AD, Seath CP, Rodriguez-Rivera FP, Li BX, et al
    Small molecule photocatalysis enables drug target identification via energy transfer.
    Proc Natl Acad Sci U S A. 2022;119:e2208077119.
    PubMed     Abstract available


  30. CHAVEZ DE, Gronau I, Hains T, Dikow RB, et al
    Comparative genomics uncovers the evolutionary history, demography, and molecular adaptations of South American canids.
    Proc Natl Acad Sci U S A. 2022;119:e2205986119.
    PubMed     Abstract available


  31. CAI Z, Lei J, Roeder K
    Model-free prediction test with application to genomics data.
    Proc Natl Acad Sci U S A. 2022;119:e2205518119.
    PubMed     Abstract available


  32. GWAK JH, Awala SI, Nguyen NL, Yu WJ, et al
    Sulfur and methane oxidation by a single microorganism.
    Proc Natl Acad Sci U S A. 2022;119:e2114799119.
    PubMed     Abstract available


  33. KOILE E, Greenhill SJ, Blasi DE, Bouckaert R, et al
    Phylogeographic analysis of the Bantu language expansion supports a rainforest route.
    Proc Natl Acad Sci U S A. 2022;119:e2112853119.
    PubMed     Abstract available


  34. CABRERIZO MJ, Maranon E
    Net effect of environmental fluctuations in multiple global-change drivers across the tree of life.
    Proc Natl Acad Sci U S A. 2022;119:e2205495119.
    PubMed     Abstract available


  35. ORLIAC EJ, Trejo Banos D, Ojavee SE, Lall K, et al
    Improving GWAS discovery and genomic prediction accuracy in biobank data.
    Proc Natl Acad Sci U S A. 2022;119:e2121279119.
    PubMed     Abstract available


    July 2022
  36. STENSETH NC, Andersson L, Hoekstra HE
    Gregor Johann Mendel and the development of modern evolutionary biology.
    Proc Natl Acad Sci U S A. 2022;119:e2201327119.
    PubMed    


  37. CHOI YS, Kim MJ, Choi EA, Kim S, et al
    Antibody-mediated blockade for galectin-3 binding protein in tumor secretome abrogates PDAC metastasis.
    Proc Natl Acad Sci U S A. 2022;119:e2119048119.
    PubMed     Abstract available


  38. BOMBLIES K, Peichel CL
    Genetics of adaptation.
    Proc Natl Acad Sci U S A. 2022;119:e2122152119.
    PubMed     Abstract available


  39. HOEKSTRA HE, Robinson GE
    Behavioral genetics and genomics: Mendel's peas, mice, and bees.
    Proc Natl Acad Sci U S A. 2022;119:e2122154119.
    PubMed     Abstract available


  40. HARTL DL
    Gregor Johann Mendel: From peasant to priest, pedagogue, and prelate.
    Proc Natl Acad Sci U S A. 2022;119:e2121953119.
    PubMed     Abstract available


  41. PAN M, Morovic W, Hidalgo-Cantabrana C, Roberts A, et al
    Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium.
    Proc Natl Acad Sci U S A. 2022;119:e2205068119.
    PubMed     Abstract available


  42. LIN MC, Yu CJ, Lee FS
    Phosphorylation of Arl4A/D promotes their binding by the HYPK chaperone for their stable recruitment to the plasma membrane.
    Proc Natl Acad Sci U S A. 2022;119:e2207414119.
    PubMed     Abstract available


  43. HU Y, Satten GA, Hu YJ
    LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control.
    Proc Natl Acad Sci U S A. 2022;119:e2122788119.
    PubMed     Abstract available


  44. FANG J, Pietzsch C, Witwit H, Tsaprailis G, et al
    Proximity interactome analysis of Lassa polymerase reveals eRF3a/GSPT1 as a druggable target for host-directed antivirals.
    Proc Natl Acad Sci U S A. 2022;119:e2201208119.
    PubMed     Abstract available


  45. BARTON NH
    The "New Synthesis".
    Proc Natl Acad Sci U S A. 2022;119:e2122147119.
    PubMed     Abstract available


  46. IRION U, Nusslein-Volhard C
    Developmental genetics with model organisms.
    Proc Natl Acad Sci U S A. 2022;119:e2122148119.
    PubMed     Abstract available


  47. BERRY A, Browne J
    Mendel and Darwin.
    Proc Natl Acad Sci U S A. 2022;119:e2122144119.
    PubMed     Abstract available


  48. SARDAR D, Chen HC, Reyes A, Varadharajan S, et al
    Sox9 directs divergent epigenomic states in brain tumor subtypes.
    Proc Natl Acad Sci U S A. 2022;119:e2202015119.
    PubMed     Abstract available


  49. HERNANDEZ J, Kaun KR
    Alcohol, neuronal plasticity, and mitochondrial trafficking.
    Proc Natl Acad Sci U S A. 2022;119:e2208744119.
    PubMed    


  50. MCAVOY A, Wakeley J
    Evaluating the structure-coefficient theorem of evolutionary game theory.
    Proc Natl Acad Sci U S A. 2022;119:e2119656119.
    PubMed     Abstract available


    June 2022
  51. SMALL CM, Healey HM, Currey MC, Beck EA, et al
    Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes.
    Proc Natl Acad Sci U S A. 2022;119:e2119602119.
    PubMed     Abstract available


  52. MARKOWITZ RHG, LaBella AL, Shi M, Rokas A, et al
    Microbiome-associated human genetic variants impact phenome-wide disease risk.
    Proc Natl Acad Sci U S A. 2022;119:e2200551119.
    PubMed     Abstract available


  53. LILLIE M, Hill J, Pettersson ME, Jern P, et al
    Expansion of a retrovirus lineage in the koala genome.
    Proc Natl Acad Sci U S A. 2022;119:e2201844119.
    PubMed     Abstract available


  54. GILBERT E, Shanmugam A, Cavalleri GL
    Revealing the recent demographic history of Europe via haplotype sharing in the UK Biobank.
    Proc Natl Acad Sci U S A. 2022;119:e2119281119.
    PubMed     Abstract available


  55. SIMONETTI B, Daly JL, Simon-Gracia L, Klein K, et al
    ESCPE-1 mediates retrograde endosomal sorting of the SARS-CoV-2 host factor Neuropilin-1.
    Proc Natl Acad Sci U S A. 2022;119:e2201980119.
    PubMed     Abstract available


  56. CAI R, Ren J, Guo M, Wei T, et al
    Dynamic intracellular exchange of nanomaterials' protein corona perturbs proteostasis and remodels cell metabolism.
    Proc Natl Acad Sci U S A. 2022;119:e2200363119.
    PubMed     Abstract available


    May 2022
  57. HORVATH S, Lu AT, Haghani A, Zoller JA, et al
    DNA methylation clocks for dogs and humans.
    Proc Natl Acad Sci U S A. 2022;119:e2120887119.
    PubMed     Abstract available


  58. MCHARG S, Booth L, Perveen R, Riba Garcia I, et al
    Mast cell infiltration of the choroid and protease release are early events in age-related macular degeneration associated with genetic risk at both chromosomes 1q32 and 10q26.
    Proc Natl Acad Sci U S A. 2022;119:e2118510119.
    PubMed     Abstract available


  59. LIU X, Zhang S, Cai Z, Kuang Z, et al
    Genomic insights into zokors' phylogeny and speciation in China.
    Proc Natl Acad Sci U S A. 2022;119:e2121819119.
    PubMed     Abstract available


  60. SINGH A, Spitzer MH, Joy JP, Kaileh M, et al
    Postmitotic G1 phase survivin drives mitogen-independent cell division of B lymphocytes.
    Proc Natl Acad Sci U S A. 2022;119:e2115567119.
    PubMed     Abstract available


  61. RIVOLLAT M, Thomas A, Ghesquiere E, Rohrlach AB, et al
    Ancient DNA gives new insights into a Norman Neolithic monumental cemetery dedicated to male elites.
    Proc Natl Acad Sci U S A. 2022;119:e2120786119.
    PubMed     Abstract available


    April 2022
  62. ROSE TD, Bechtler T, Ciora OA, Anh Lilian Le K, et al
    MoSBi: Automated signature mining for molecular stratification and subtyping.
    Proc Natl Acad Sci U S A. 2022;119:e2118210119.
    PubMed     Abstract available


  63. MILLS MC, Mathieson I
    The challenge of detecting recent natural selection in human populations.
    Proc Natl Acad Sci U S A. 2022;119:e2203237119.
    PubMed    


  64. MARCINIAK S, Bergey CM, Silva AM, Haluszko A, et al
    An integrative skeletal and paleogenomic analysis of stature variation suggests relatively reduced health for early European farmers.
    Proc Natl Acad Sci U S A. 2022;119:e2106743119.
    PubMed     Abstract available


  65. BREUSING C, Genetti M, Russell SL, Corbett-Detig RB, et al
    Horizontal transmission enables flexible associations with locally adapted symbiont strains in deep-sea hydrothermal vent symbioses.
    Proc Natl Acad Sci U S A. 2022;119:e2115608119.
    PubMed     Abstract available


    March 2022
  66. LANDIS MJ, Quintero I, Munoz MM, Zapata F, et al
    Phylogenetic inference of where species spread or split across barriers.
    Proc Natl Acad Sci U S A. 2022;119:e2116948119.
    PubMed     Abstract available


  67. RAO R, Leibler S
    Evolutionary dynamics, evolutionary forces, and robustness: A nonequilibrium statistical mechanics perspective.
    Proc Natl Acad Sci U S A. 2022;119:e2112083119.
    PubMed     Abstract available


  68. SEVERSON AL, Byrd BF, Mallott EK, Owings AC, et al
    Ancient and modern genomics of the Ohlone Indigenous population of California.
    Proc Natl Acad Sci U S A. 2022;119:e2111533119.
    PubMed     Abstract available


  69. WU W, Gao YD, Jiang DC, Lei J, et al
    Genomic adaptations for arboreal locomotion in Asian flying treefrogs.
    Proc Natl Acad Sci U S A. 2022;119:e2116342119.
    PubMed     Abstract available


  70. KRAINC T, Fuentes A
    Genetic ancestry in precision medicine is reshaping the race debate.
    Proc Natl Acad Sci U S A. 2022;119:e2203033119.
    PubMed    


  71. KOLDAEVA A, Tsai HF, Shen AQ, Pigolotti S, et al
    Population genetics in microchannels.
    Proc Natl Acad Sci U S A. 2022;119:e2120821119.
    PubMed     Abstract available


  72. ZHANG S, Nelson OD, Price IR, Zhu C, et al
    Long-chain fatty acyl coenzyme A inhibits NME1/2 and regulates cancer metastasis.
    Proc Natl Acad Sci U S A. 2022;119:e2117013119.
    PubMed     Abstract available


  73. BARBIERI S, Nurni Ravi A, Griffin EE, Gotta M, et al
    Modeling protein dynamics in Caenorhabditis elegans embryos reveals that the PLK-1 gradient relies on weakly coupled reaction-diffusion mechanisms.
    Proc Natl Acad Sci U S A. 2022;119:e2114205119.
    PubMed     Abstract available


  74. LU Q, Zhang Y, Hellner J, Giannini C, et al
    Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between brassinosteroid and auxin signaling.
    Proc Natl Acad Sci U S A. 2022;119:e2118220119.
    PubMed     Abstract available


  75. MCCULLOUGH EL, Whittington E, Singh A, Pitnick S, et al
    The life history of Drosophila sperm involves molecular continuity between male and female reproductive tracts.
    Proc Natl Acad Sci U S A. 2022;119:e2119899119.
    PubMed     Abstract available


  76. BOHL JA, Lay S, Chea S, Ahyong V, et al
    Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system.
    Proc Natl Acad Sci U S A. 2022;119:e2115285119.
    PubMed     Abstract available


  77. KLEINMAN-RUIZ D, Lucena-Perez M, Villanueva B, Fernandez J, et al
    Purging of deleterious burden in the endangered Iberian lynx.
    Proc Natl Acad Sci U S A. 2022;119:e2110614119.
    PubMed     Abstract available


  78. FERDOSI S, Tangeysh B, Brown TR, Everley PA, et al
    Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions.
    Proc Natl Acad Sci U S A. 2022;119:e2106053119.
    PubMed     Abstract available


  79. WINKLER J, Liu P, Phong K, Hinrichs JH, et al
    Bisphenol A replacement chemicals, BPF and BPS, induce protumorigenic changes in human mammary gland organoid morphology and proteome.
    Proc Natl Acad Sci U S A. 2022;119:e2115308119.
    PubMed     Abstract available


  80. WEIGERT MUNOZ A, Hoyer E, Schumacher K, Grognot M, et al
    Eukaryotic catecholamine hormones influence the chemotactic control of Vibrio campbellii by binding to the coupling protein CheW.
    Proc Natl Acad Sci U S A. 2022;119:e2118227119.
    PubMed     Abstract available


  81. GOVERNA V, Talbot H, Goncalves de Oliveira K, Cerezo-Magana M, et al
    Landscape of surfaceome and endocytome in human glioma is divergent and depends on cellular spatial organization.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


    February 2022
  82. SODELAND M, Jentoft S, Jorde PE, Mattingsdal M, et al
    Stabilizing selection on Atlantic cod supergenes through a millennium of extensive exploitation.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  83. DULIAS K, Foody MGB, Justeau P, Silva M, et al
    Ancient DNA at the edge of the world: Continental immigration and the persistence of Neolithic male lineages in Bronze Age Orkney.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  84. WAN J, Browne PJ, Hershey DM, Montabana E, et al
    A protease-mediated switch regulates the growth of magnetosome organelles in Magnetospirillum magneticum.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  85. CHAVEZ MONTES RA, Haber A, Pardo J, Powell RF, et al
    A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  86. MADRIGAL JL, Schoepp NG, Xu L, Powell CS, et al
    Characterizing cell interactions at scale with made-to-order droplet ensembles (MODEs).
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


    January 2022
  87. SHERKOW JS, Barker KB, Braverman I, Cook-Deegan R, et al
    Ethical, legal, and social issues in the Earth BioGenome Project.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  88. SINGHAL S, Colli GR, Grundler MR, Costa GC, et al
    No link between population isolation and speciation rate in squamate reptiles.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  89. CONTRERAS-LOPEZ O, Vidal EA, Riveras E, Alvarez JM, et al
    Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  90. MC CARTNEY AM, Anderson J, Liggins L, Hudson ML, et al
    Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  91. STEPHAN T, Burgess SM, Cheng H, Danko CG, et al
    Darwinian genomics and diversity in the tree of life.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  92. HOGG CJ, Ottewell K, Latch P, Rossetto M, et al
    Threatened Species Initiative: Empowering conservation action using genomic resources.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available



  93. Sequence locally, think globally: The Darwin Tree of Life Project.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  94. HUDDART JEA, Crawford AJ, Luna-Tapia AL, Restrepo S, et al
    EBP-Colombia and the bioeconomy: Genomics in the service of biodiversity conservation and sustainable development.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  95. KRESS WJ, Soltis DE, Kersey PJ, Wegrzyn JL, et al
    Green plant genomes: What we know in an era of rapidly expanding opportunities.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  96. LAWNICZAK MKN, Durbin R, Flicek P, Lindblad-Toh K, et al
    Standards recommendations for the Earth BioGenome Project.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  97. BLAXTER M, Archibald JM, Childers AK, Coddington JA, et al
    Why sequence all eukaryotes?
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  98. LEWIN HA, Richards S, Lieberman Aiden E, Allende ML, et al
    The Earth BioGenome Project 2020: Starting the clock.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed    


  99. KANAGARAJ R, Mitter R, Kantidakis T, Edwards MM, et al
    Integrated genome and transcriptome analyses reveal the mechanism of genome instability in ataxia with oculomotor apraxia 2.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  100. SHIGENOBU S, Hayashi Y, Watanabe D, Tokuda G, et al
    Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus: Gene duplication facilitates social evolution.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  101. SAKAI HD, Nur N, Kato S, Yuki M, et al
    Insight into the symbiotic lifestyle of DPANN archaea revealed by cultivation and genome analyses.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  102. BELLINGER MR, Wei J, Hartmann U, Cadiou H, et al
    Conservation of magnetite biomineralization genes in all domains of life and implications for magnetic sensing.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  103. LIU Y, Vasina VV, Kraner ME, Peters WS, et al
    Proteomics of isolated sieve tubes from Nicotiana tabacum: sieve element-specific proteins reveal differentiation of the endomembrane system.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


  104. WILLI Y, Kristensen TN, Sgro CM, Weeks AR, et al
    Conservation genetics as a management tool: The five best-supported paradigms to assist the management of threatened species.
    Proc Natl Acad Sci U S A. 2022;119.
    PubMed     Abstract available


    December 2021
  105. GUINDON S, De Maio N
    Accounting for spatial sampling patterns in Bayesian phylogeography.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  106. HOTALING S, Kelley JL, Frandsen PB
    Toward a genome sequence for every animal: Where are we now?
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  107. SONG JHT, Grant RL, Behrens VC, Kucka M, et al
    Genetic studies of human-chimpanzee divergence using stem cell fusions.
    Proc Natl Acad Sci U S A. 2021;118.
    PubMed     Abstract available


  108. JASPERS C, Ehrlich M, Pujolar JM, Kunzel S, et al
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  109. MA Q, Caillier SJ, Muzic S, Wilson MR, et al
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  110. CHENG Y, Miller MJ, Zhang D, Xiong Y, et al
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  111. KHAN A, Patel K, Shukla H, Viswanathan A, et al
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  112. VANDEWOUDE S, Vousden KH
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  113. RYBARSKI JR, Hu K, Hill AM, Wilke CO, et al
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    November 2021
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    Scaling concepts in 'omics: Nuclear lamin-B scales with tumor growth and often predicts poor prognosis, unlike fibrosis.
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  115. AHERN OM, Whittaker KA, Williams TC, Hunt DE, et al
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  116. KARDOS M, Armstrong EE, Fitzpatrick SW, Hauser S, et al
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  117. LEE J, Lim C, Han TH, Andreani T, et al
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  118. CHEN W, Wu Y, Fritschi FB, Juenger TE, et al
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  119. XU C, Fang X, Lu T, Dean C, et al
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  120. BIRDSEYE D, de Boer LA, Bai H, Zhou P, et al
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  121. LAGUNAS-ROBLES G, Purcell J, Brelsford A
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  122. HASEGAWA Y, Struhl K
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  123. DELMONT TO
    Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean.
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  124. ESHEL G, Araus V, Undurraga S, Soto DC, et al
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  125. MOLIMAU-SAMASONI S, Woolner VH, Foliga ST, Robichon K, et al
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  126. QIAO Q, Edger PP, Xue L, Qiong, et al
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  127. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
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    October 2021
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  129. GARCIA-SASTRE A
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    September 2021
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  132. SIX C, Ratin M, Marie D, Corre E, et al
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  133. HAGEDORN M, Page CA, O'Neil KL, Flores DM, et al
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  134. COPE OL, Keefover-Ring K, Kruger EL, Lindroth RL, et al
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  135. NEVES DM, Kerkhoff AJ, Echeverria-Londono S, Merow C, et al
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  138. CHOI JY, Dai X, Alam O, Peng JZ, et al
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  140. FLEISCHER V, Gonzalez-Escamilla G, Ciolac D, Albrecht P, et al
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  141. SYNEK L, Pleskot R, Sekeres J, Serrano N, et al
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  142. BRAMANTI B, Wu Y, Yang R, Cui Y, et al
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  143. KARS ME, Basak AN, Onat OE, Bilguvar K, et al
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    August 2021
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  145. NELSON DL, Caskey CT
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  146. BIRZU G, Hallatschek O, Korolev KS
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  148. TRIPODI P, Rabanus-Wallace MT, Barchi L, Kale S, et al
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  149. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
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  150. LEE S, Sieradzki ET, Nicolas AM, Walker RL, et al
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  152. QI Y, Nepal KK, Blodgett JAV
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  153. ROBERTS KINGMAN GA, Lee D, Jones FC, Desmet D, et al
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    July 2021
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  156. MITCHELL KJ
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  157. RODRIGUES JA, Hsieh PH, Ruan D, Nishimura T, et al
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  158. OSVATIC JT, Wilkins LGE, Leibrecht L, Leray M, et al
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  159. LEONARD MM, Valitutti F, Karathia H, Pujolassos M, et al
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    June 2021
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  171. TISZA MJ, Buck CB
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    April 2021
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    March 2021
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  202. KAWAKUBO S, Gao F, Li S, Tan Z, et al
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    January 2021
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    Hidden proteome of synaptic vesicles in the mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:33586-33596.
    PubMed     Abstract available


  226. RINCON-SANDOVAL M, Duarte-Ribeiro E, Davis AM, Santaquiteria A, et al
    Evolutionary determinism and convergence associated with water-column transitions in marine fishes.
    Proc Natl Acad Sci U S A. 2020;117:33396-33403.
    PubMed     Abstract available


  227. AZAR B
    Profile of Haig H. Kazazian Jr.
    Proc Natl Acad Sci U S A. 2020;117:32185-32188.
    PubMed    


  228. CONCILLI M, Petruzzelli R, Parisi S, Catalano F, et al
    Pharmacoproteomics pinpoints HSP70 interaction for correction of the most frequent Wilson disease-causing mutant of ATP7B.
    Proc Natl Acad Sci U S A. 2020;117:32453-32463.
    PubMed     Abstract available


  229. LANDY JA, Oschmann A, Munch SB, Walsh MR, et al
    Ancestral genetic variation in phenotypic plasticity underlies rapid evolutionary changes in resurrected populations of waterfleas.
    Proc Natl Acad Sci U S A. 2020;117:32535-32544.
    PubMed     Abstract available


  230. LI K, Zhang S, Song X, Weyrich A, et al
    Genome evolution of blind subterranean mole rats: Adaptive peripatric versus sympatric speciation.
    Proc Natl Acad Sci U S A. 2020;117:32499-32508.
    PubMed     Abstract available


  231. BORDA V, Alvim I, Mendes M, Silva-Carvalho C, et al
    The genetic structure and adaptation of Andean highlanders and Amazonians are influenced by the interplay between geography and culture.
    Proc Natl Acad Sci U S A. 2020;117:32557-32565.
    PubMed     Abstract available


  232. HELMSTETTER AJ, Bethune K, Kamdem NG, Sonke B, et al
    Individualistic evolutionary responses of Central African rain forest plants to Pleistocene climatic fluctuations.
    Proc Natl Acad Sci U S A. 2020;117:32509-32518.
    PubMed     Abstract available


  233. MARTINSON VG, Gawryluk RMR, Gowen BE, Curtis CI, et al
    Multiple origins of obligate nematode and insect symbionts by a clade of bacteria closely related to plant pathogens.
    Proc Natl Acad Sci U S A. 2020;117:31979-31986.
    PubMed     Abstract available


  234. RAVINDRAN S
    Profile of Se-Jin Lee.
    Proc Natl Acad Sci U S A. 2020;117:30870-30872.
    PubMed    


  235. YANG HC, Chen CH, Wang JH, Liao HC, et al
    Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associations.
    Proc Natl Acad Sci U S A. 2020;117:30679-30686.
    PubMed     Abstract available


  236. AUNINS TR, Erickson KE, Chatterjee A
    Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli.
    Proc Natl Acad Sci U S A. 2020;117:30699-30709.
    PubMed     Abstract available


  237. BISCHOF R, Milleret C, Dupont P, Chipperfield J, et al
    Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring.
    Proc Natl Acad Sci U S A. 2020;117:30531-30538.
    PubMed     Abstract available


    November 2020
  238. ZHANG H, Zoued A, Liu X, Sit B, et al
    Type I interferon remodels lysosome function and modifies intestinal epithelial defense.
    Proc Natl Acad Sci U S A. 2020;117:29862-29871.
    PubMed     Abstract available


  239. CHEN D, Zhang Q, Tang W, Huang Z, et al
    The evolutionary origin and domestication history of goldfish (Carassius auratus).
    Proc Natl Acad Sci U S A. 2020;117:29775-29785.
    PubMed     Abstract available


  240. CLEVES PA, Tinoco AI, Bradford J, Perrin D, et al
    Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.
    Proc Natl Acad Sci U S A. 2020;117:28899-28905.
    PubMed     Abstract available


  241. VIEGAS J
    Profile of Masayori Inouye.
    Proc Natl Acad Sci U S A. 2020;117:28543-28545.
    PubMed    


  242. LEE J, Ha S, Kim M, Kim SW, et al
    Spatial and temporal diversity of glycome expression in mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:28743-28753.
    PubMed     Abstract available


  243. KIM J, Rosenberg NA, Palacios JA
    Distance metrics for ranked evolutionary trees.
    Proc Natl Acad Sci U S A. 2020;117:28876-28886.
    PubMed     Abstract available


  244. EPSTEIN JH, Anthony SJ, Islam A, Kilpatrick AM, et al
    Nipah virus dynamics in bats and implications for spillover to humans.
    Proc Natl Acad Sci U S A. 2020;117:29190-29201.
    PubMed     Abstract available


  245. KOZLENKOV A, Vermunt MW, Apontes P, Li J, et al
    Evolution of regulatory signatures in primate cortical neurons at cell-type resolution.
    Proc Natl Acad Sci U S A. 2020;117:28422-28432.
    PubMed     Abstract available


  246. ROMERO IC, Kong S, Fowlkes CC, Jaramillo C, et al
    Improving the taxonomy of fossil pollen using convolutional neural networks and superresolution microscopy.
    Proc Natl Acad Sci U S A. 2020;117:28496-28505.
    PubMed     Abstract available


  247. STOCKLEY P, Franco C, Claydon AJ, Davidson A, et al
    Revealing mechanisms of mating plug function under sexual selection.
    Proc Natl Acad Sci U S A. 2020;117:27465-27473.
    PubMed     Abstract available


  248. CAO K, Ugarenko M, Ozark PA, Wang J, et al
    DOT1L-controlled cell-fate determination and transcription elongation are independent of H3K79 methylation.
    Proc Natl Acad Sci U S A. 2020;117:27365-27373.
    PubMed     Abstract available


  249. SHIBL AA, Isaac A, Ochsenkuhn MA, Cardenas A, et al
    Diatom modulation of select bacteria through use of two unique secondary metabolites.
    Proc Natl Acad Sci U S A. 2020;117:27445-27455.
    PubMed     Abstract available


  250. SHENG X, Qiu C, Liu H, Gluck C, et al
    Systematic integrated analysis of genetic and epigenetic variation in diabetic kidney disease.
    Proc Natl Acad Sci U S A. 2020 Nov 3. pii: 2005905117.
    PubMed     Abstract available


    October 2020
  251. OIKONOMOU P, Salatino R, Tavazoie S
    In vivo mRNA display enables large-scale proteomics by next generation sequencing.
    Proc Natl Acad Sci U S A. 2020;117:26710-26718.
    PubMed     Abstract available


  252. BUHLMANN P
    Toward causality and improving external validity.
    Proc Natl Acad Sci U S A. 2020;117:25963-25965.
    PubMed    


  253. CARRILLO JD, Faurby S, Silvestro D, Zizka A, et al
    Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
    Proc Natl Acad Sci U S A. 2020;117:26281-26287.
    PubMed     Abstract available


  254. CHEN J, Lu L, Robb SMC, Collin M, et al
    Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.
    Proc Natl Acad Sci U S A. 2020;117:26288-26297.
    PubMed     Abstract available


  255. HAN J, Wang S, Yeung K, Yang D, et al
    Proteome-wide effects of naphthalene-derived secondary organic aerosol in BEAS-2B cells are caused by short-lived unsaturated carbonyls.
    Proc Natl Acad Sci U S A. 2020;117:25386-25395.
    PubMed     Abstract available


  256. HEINDEL DW, Koppolu S, Zhang Y, Kasper B, et al
    Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity.
    Proc Natl Acad Sci U S A. 2020 Oct 12. pii: 2008203117.
    PubMed     Abstract available


  257. RENNER SS
    Bitter gourd from Africa expanded to Southeast Asia and was domesticated there: A new insight from parallel studies.
    Proc Natl Acad Sci U S A. 2020;117:24630-24631.
    PubMed    


  258. MATSUMURA H, Hsiao MC, Lin YP, Toyoda A, et al
    Reply to Renner: Meticulous investigation, not sequencing effort, leads to robust conclusion.
    Proc Natl Acad Sci U S A. 2020;117:24632-24633.
    PubMed    


  259. ANDERSON KM, Collins MA, Kong R, Fang K, et al
    Convergent molecular, cellular, and cortical neuroimaging signatures of major depressive disorder.
    Proc Natl Acad Sci U S A. 2020;117:25138-25149.
    PubMed     Abstract available


  260. NGO D, Wen D, Gao Y, Keyes MJ, et al
    Circulating testican-2 is a podocyte-derived marker of kidney health.
    Proc Natl Acad Sci U S A. 2020;117:25026-25035.
    PubMed     Abstract available


  261. MCWILLIAM HEG, Mak JYW, Awad W, Zorkau M, et al
    Endoplasmic reticulum chaperones stabilize ligand-receptive MR1 molecules for efficient presentation of metabolite antigens.
    Proc Natl Acad Sci U S A. 2020;117:24974-24985.
    PubMed     Abstract available


  262. TUCHOLSKI T, Cai W, Gregorich ZR, Bayne EF, et al
    Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics.
    Proc Natl Acad Sci U S A. 2020;117:24691-24700.
    PubMed     Abstract available


    September 2020
  263. ARISTIZABAL MJ, Anreiter I, Halldorsdottir T, Odgers CL, et al
    Biological embedding of experience: A primer on epigenetics.
    Proc Natl Acad Sci U S A. 2020;117:23261-23269.
    PubMed     Abstract available


  264. MCEWEN LM, O'Donnell KJ, McGill MG, Edgar RD, et al
    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells.
    Proc Natl Acad Sci U S A. 2020;117:23329-23335.
    PubMed     Abstract available


  265. VAN DEN BROECK F, Savill NJ, Imamura H, Sanders M, et al
    Ecological divergence and hybridization of Neotropical Leishmania parasites.
    Proc Natl Acad Sci U S A. 2020 Sep 21. pii: 1920136117.
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  266. HECKMANN D, Campeau A, Lloyd CJ, Phaneuf PV, et al
    Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.
    Proc Natl Acad Sci U S A. 2020;117:23182-23190.
    PubMed     Abstract available


  267. ALLEN RS, Gregg CM, Okada S, Menon A, et al
    Plant expression of NifD protein variants resistant to mitochondrial degradation.
    Proc Natl Acad Sci U S A. 2020;117:23165-23173.
    PubMed     Abstract available


  268. BJORKEROTH J, Campbell K, Malina C, Yu R, et al
    Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media.
    Proc Natl Acad Sci U S A. 2020;117:21804-21812.
    PubMed     Abstract available


  269. WAINBERG M, Magis AT, Earls JC, Lovejoy JC, et al
    Multiomic blood correlates of genetic risk identify presymptomatic disease alterations.
    Proc Natl Acad Sci U S A. 2020;117:21813-21820.
    PubMed     Abstract available


  270. CAI W, Huang J, Zhu Q, Li BE, et al
    Enhancer dependence of cell-type-specific gene expression increases with developmental age.
    Proc Natl Acad Sci U S A. 2020;117:21450-21458.
    PubMed     Abstract available


    August 2020
  271. BUFFALO V, Coop G
    Estimating the genome-wide contribution of selection to temporal allele frequency change.
    Proc Natl Acad Sci U S A. 2020;117:20672-20680.
    PubMed     Abstract available


  272. KWESI-MALIEPAARD EM, Aslam MA, Alemdehy MF, van den Brand T, et al
    The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8(+) T cells.
    Proc Natl Acad Sci U S A. 2020;117:20706-20716.
    PubMed     Abstract available


  273. WILLIAMS LM, McCann FE, Cabrita MA, Layton T, et al
    Identifying collagen VI as a target of fibrotic diseases regulated by CREBBP/EP300.
    Proc Natl Acad Sci U S A. 2020;117:20753-20763.
    PubMed     Abstract available


  274. WEBER JA, Park SG, Luria V, Jeon S, et al
    The whale shark genome reveals how genomic and physiological properties scale with body size.
    Proc Natl Acad Sci U S A. 2020;117:20662-20671.
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  275. CARBALLAR-LEJARAZU R, Ogaugwu C, Tushar T, Kelsey A, et al
    Next-generation gene drive for population modification of the malaria vector mosquito, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2020 Aug 24. pii: 2010214117.
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  276. LA CONO V, Messina E, Rohde M, Arcadi E, et al
    Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides.
    Proc Natl Acad Sci U S A. 2020;117:20223-20234.
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  277. AMSTER G, Murphy DA, Milligan WR, Sella G, et al
    Changes in life history and population size can explain the relative neutral diversity levels on X and autosomes in extant human populations.
    Proc Natl Acad Sci U S A. 2020;117:20063-20069.
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  278. ABU RAYYAN A, Kamal L, Casadei S, Brownstein Z, et al
    Genomic analysis of inherited hearing loss in the Palestinian population.
    Proc Natl Acad Sci U S A. 2020;117:20070-20076.
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  279. PARK A, Oh S, Jung KL, Choi UY, et al
    Global epigenomic analysis of KSHV-infected primary effusion lymphoma identifies functional MYC superenhancers and enhancer RNAs.
    Proc Natl Acad Sci U S A. 2020 Aug 18. pii: 1922216117.
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  280. ULHUQ FR, Gomes MC, Duggan GM, Guo M, et al
    A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition.
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    June 2020
  281. SU QP, Zhao ZW, Meng L, Ding M, et al
    Superresolution imaging reveals spatiotemporal propagation of human replication foci mediated by CTCF-organized chromatin structures.
    Proc Natl Acad Sci U S A. 2020;117:15036-15046.
    PubMed     Abstract available


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