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The 20K Word Road to Mandarin Proficiency

By B. S. Kamps et al.

Genetics

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Articles published in Proc Natl Acad Sci U S A
Retrieve available abstracts of 381 articles:
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Single Articles

April 2024

STRINGER EJ, Gruber B, Sarre SD, Wardle GM, et al
Boom-bust population dynamics drive rapid genetic change.
Proc Natl Acad Sci U S A. 2024;121:e2320590121.
PubMed Abstract available

ZHANG J, Cong Q, Shen J, Song L, et al
What one genus of showy moths can say about migration, adaptation, and wing pattern.
Proc Natl Acad Sci U S A. 2024;121:e2319726121.
PubMed Abstract available

HOGAN MP, Holding ML, Nystrom GS, Colston TJ, et al
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom.
Proc Natl Acad Sci U S A. 2024;121:e2313440121.
PubMed Abstract available

SUN P, Lu Z, Wang Z, Wang S, et al
Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family.
Proc Natl Acad Sci U S A. 2024;121:e2313921121.
PubMed Abstract available

BAHARAV TZ, Tse D, Salzman J
OASIS: An interpretable, finite-sample valid alternative to Pearson's X(2) for scientific discovery.
Proc Natl Acad Sci U S A. 2024;121:e2304671121.
PubMed Abstract available

LONG BM, Matsuda Y, Moroney JV
Algal chloroplast pyrenoids: Evidence for convergent evolution.
Proc Natl Acad Sci U S A. 2024;121:e2402546121.
PubMed

March 2024

KEHLET-DELGADO H, Montoya AP, Jensen KT, Wendlandt CE, et al
The evolutionary genomics of adaptation to stress in wild rhizobium bacteria.
Proc Natl Acad Sci U S A. 2024;121:e2311127121.
PubMed Abstract available

SHEINMAN M, Arndt PF, Massip F
Modeling the mosaic structure of bacterial genomes to infer their evolutionary history.
Proc Natl Acad Sci U S A. 2024;121:e2313367121.
PubMed Abstract available

PEZZINI D, Taylor KL, Reisig DD, Fritz ML, et al
Cross-pollination in seed-blended refuge and selection for Vip3A resistance in a lepidopteran pest as detected by genomic monitoring.
Proc Natl Acad Sci U S A. 2024;121:e2319838121.
PubMed Abstract available

SCHRAIBER JG, Edge MD
Heritability within groups is uninformative about differences among groups: Cases from behavioral, evolutionary, and statistical genetics.
Proc Natl Acad Sci U S A. 2024;121:e2319496121.
PubMed Abstract available

GROH JS, Coop G
The temporal and genomic scale of selection following hybridization.
Proc Natl Acad Sci U S A. 2024;121:e2309168121.
PubMed Abstract available

BORETTO M, Geurts MH, Gandhi S, Ma Z, et al
Epidermal growth factor receptor (EGFR) is a target of the tumor-suppressor E3 ligase FBXW7.
Proc Natl Acad Sci U S A. 2024;121:e2309902121.
PubMed Abstract available

KRUEGER J, Preusse M, Oswaldo Gomez N, Frommeyer YN, et al
tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa.
Proc Natl Acad Sci U S A. 2024;121:e2312874121.
PubMed Abstract available

SIMOES LG, Peyroteo-Stjerna R, Marchand G, Bernhardsson C, et al
Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France.
Proc Natl Acad Sci U S A. 2024;121:e2310545121.
PubMed Abstract available

MOROMIZATO R, Fukuda K, Suzuki S, Motomura T, et al
Pyrenoid proteomics reveals independent evolution of the CO(2)-concentrating organelle in chlorarachniophytes.
Proc Natl Acad Sci U S A. 2024;121:e2318542121.
PubMed Abstract available

February 2024

KEROACK CD, Elsworth B, Tennessen JA, Paul AS, et al
Comparative chemical genomics in Babesia species identifies the alkaline phosphatase PhoD as a determinant of antiparasitic resistance.
Proc Natl Acad Sci U S A. 2024;121:e2312987121.
PubMed Abstract available

LUKHTANOV VA
Polytypic species concept and subspecies in the genomic era.
Proc Natl Acad Sci U S A. 2024;121:e2317038121.
PubMed

SIMON A, Coop G
The contribution of gene flow, selection, and genetic drift to five thousand years of human allele frequency change.
Proc Natl Acad Sci U S A. 2024;121:e2312377121.
PubMed Abstract available

NOCH EK, Palma L, Yim I, Bullen N, et al
Cysteine induces mitochondrial reductive stress in glioblastoma through hydrogen peroxide production.
Proc Natl Acad Sci U S A. 2024;121:e2317343121.
PubMed Abstract available

PHUNG TK, Berndsen K, Shastry R, Phan TLCHB, et al
CURTAIN-A unique web-based tool for exploration and sharing of MS-based proteomics data.
Proc Natl Acad Sci U S A. 2024;121:e2312676121.
PubMed Abstract available

YI T, Wagner G
Malignant tumor cells engender second membrane-lined organelles for self-protection and tumor progression.
Proc Natl Acad Sci U S A. 2024;121:e2317141121.
PubMed Abstract available

SPRINGSTEIN BL, Paulo JA, Park H, Henry K, et al
Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics.
Proc Natl Acad Sci U S A. 2024;121:e2317453121.
PubMed Abstract available

BAXI AB, Li J, Quach VM, Pade LR, et al
Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer.
Proc Natl Acad Sci U S A. 2024;121:e2311625121.
PubMed Abstract available

January 2024

CAMACHO-MATEU J, Lampo A, Sireci M, Munoz MA, et al
Sparse species interactions reproduce abundance correlation patterns in microbial communities.
Proc Natl Acad Sci U S A. 2024;121:e2309575121.
PubMed Abstract available

SUTTER PA, Willis CM, Menoret A, Nicaise AM, et al
Astrocytic TIMP-1 regulates production of Anastellin, an inhibitor of oligodendrocyte differentiation and FTY720 responses.
Proc Natl Acad Sci U S A. 2024;121:e2306816121.
PubMed Abstract available

LI C, Wickell D, Kuo LY, Chen X, et al
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes.
Proc Natl Acad Sci U S A. 2024;121:e2312607121.
PubMed Abstract available

ZHANG Y, Zhang H, Wu Y
A general approach for inferring the ancestry of recent ancestors of an admixed individual.
Proc Natl Acad Sci U S A. 2024;121:e2316242120.
PubMed Abstract available

YUAN J, Kitchener AC, Lackey LB, Sun T, et al
The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids.
Proc Natl Acad Sci U S A. 2024;121:e2310763120.
PubMed Abstract available

VAUGHAN TG, Scire J, Nadeau SA, Stadler T, et al
Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data.
Proc Natl Acad Sci U S A. 2024;121:e2308125121.
PubMed Abstract available

December 2023

WEN J, Nasrallah IM, Abdulkadir A, Satterthwaite TD, et al
Genomic loci influence patterns of structural covariance in the human brain.
Proc Natl Acad Sci U S A. 2023;120:e2300842120.
PubMed Abstract available

ZHU S, Liu J, Patel V, Zhao X, et al
Antigen exposure reshapes chromatin architecture in central memory CD8(+) T cells and imprints enhanced recall capacity.
Proc Natl Acad Sci U S A. 2023;120:e2313476120.
PubMed Abstract available

SKAAR EP
Biogeography of the genus Staphylococci on human skin.
Proc Natl Acad Sci U S A. 2023;120:e2318509120.
PubMed

ZHONG X, Moresco JJ, Diedrich JK, Pinto AM, et al
Essential role of MFSD1-GLMP-GIMAP5 in lymphocyte survival and liver homeostasis.
Proc Natl Acad Sci U S A. 2023;120:e2314429120.
PubMed Abstract available

BLANCO-PASTOR JL
Inclusion of highly admixed genotypes in grapevine genomic analyses leads to an equivocal reconstruction of its domestication history.
Proc Natl Acad Sci U S A. 2023;120:e2310026120.
PubMed

JIN L, Chen Y, Muzaffar S, Li C, et al
Epigenetic switch reshapes epithelial progenitor cell signatures and drives inflammatory pathogenesis in hidradenitis suppurativa.
Proc Natl Acad Sci U S A. 2023;120:e2315096120.
PubMed Abstract available

November 2023

ESPINOZA B, Adiga A, Venkatramanan S, Warren AS, et al
Coupled models of genomic surveillance and evolving pandemics with applications for timely public health interventions.
Proc Natl Acad Sci U S A. 2023;120:e2305227120.
PubMed Abstract available

TORRES ROBLES J, Lou HJ, Shi G, Pan PL, et al
Linear motif specificity in signaling through p38alpha and ERK2 mitogen-activated protein kinases.
Proc Natl Acad Sci U S A. 2023;120:e2316599120.
PubMed Abstract available

SIMMONS M, Horbelt N, Sverko T, Scoppola E, et al
Invasive mussels fashion silk-like byssus via mechanical processing of massive horizontally acquired coiled coils.
Proc Natl Acad Sci U S A. 2023;120:e2311901120.
PubMed Abstract available

JOGLEKAR P, Conlan S, Lee-Lin SQ, Deming C, et al
Integrated genomic and functional analyses of human skin-associated Staphylococcus reveal extensive inter- and intra-species diversity.
Proc Natl Acad Sci U S A. 2023;120:e2310585120.
PubMed Abstract available

HU W, Zhang R, Xu H, Li Y, et al
CAMSAP1 role in orchestrating structure and dynamics of manchette microtubule minus-ends impacts male fertility during spermiogenesis.
Proc Natl Acad Sci U S A. 2023;120:e2313787120.
PubMed Abstract available

October 2023

BENEGAS G, Batra SS, Song YS
DNA language models are powerful predictors of genome-wide variant effects.
Proc Natl Acad Sci U S A. 2023;120:e2311219120.
PubMed Abstract available

CAO X, Kose C, Selby CP, Sancar A, et al
In vitro DNA repair genomics using XR-seq with Escherichia coli and mammalian cell-free extracts.
Proc Natl Acad Sci U S A. 2023;120:e2314233120.
PubMed Abstract available

MATHUR S, Mason AJ, Bradburd GS, Gibbs HL, et al
Functional genomic diversity is correlated with neutral genomic diversity in populations of an endangered rattlesnake.
Proc Natl Acad Sci U S A. 2023;120:e2303043120.
PubMed Abstract available

XIE Y, Ersan S, Guan X, Wang J, et al
Unexpected metabolic rewiring of CO(2) fixation in H(2)-mediated materials-biology hybrids.
Proc Natl Acad Sci U S A. 2023;120:e2308373120.
PubMed Abstract available

LIAO SE, Sudarshan M, Regev O
Deciphering RNA splicing logic with interpretable machine learning.
Proc Natl Acad Sci U S A. 2023;120:e2221165120.
PubMed Abstract available

DUFRESNES C, Poyarkov N, Jablonski D
Acknowledging more biodiversity without more species.
Proc Natl Acad Sci U S A. 2023;120:e2302424120.
PubMed Abstract available

GU TT, Wu H, Yang F, Gaubert P, et al
Genomic analysis reveals a cryptic pangolin species.
Proc Natl Acad Sci U S A. 2023;120:e2304096120.
PubMed Abstract available

September 2023

ROTHMAN JE
Starting at Go: Protein structure prediction succumbs to machine learning.
Proc Natl Acad Sci U S A. 2023;120:e2311128120.
PubMed Abstract available

MASON FM, Kounlavong ES, Tebeje AT, Dahiya R, et al
SETD2 safeguards the genome against isochromosome formation.
Proc Natl Acad Sci U S A. 2023;120:e2303752120.
PubMed Abstract available

SIRECI M, Munoz MA, Grilli J
Environmental fluctuations explain the universal decay of species-abundance correlations with phylogenetic distance.
Proc Natl Acad Sci U S A. 2023;120:e2217144120.
PubMed Abstract available

OH DH, Ma X, Hogg SJ, He J, et al
Rationally designed chimeric PI3K-BET bromodomain inhibitors elicit curative responses in MYC-driven lymphoma.
Proc Natl Acad Sci U S A. 2023;120:e2306414120.
PubMed Abstract available

TAKAKURA M, Lam YH, Nakagawa R, Ng MY, et al
Differential second messenger signaling via dopamine neurons bidirectionally regulates memory retention.
Proc Natl Acad Sci U S A. 2023;120:e2304851120.
PubMed Abstract available

August 2023

TAN R, Hoare M, Welle KA, Swovick K, et al
Folding stabilities of ribosome-bound nascent polypeptides probed by mass spectrometry.
Proc Natl Acad Sci U S A. 2023;120:e2303167120.
PubMed Abstract available

ZELLER MA, Ma J, Wong FY, Tum S, et al
The genomic landscape of swine influenza A viruses in Southeast Asia.
Proc Natl Acad Sci U S A. 2023;120:e2301926120.
PubMed Abstract available

MANGIOLA S, Roth-Schulze AJ, Trussart M, Zozaya-Valdes E, et al
sccomp: Robust differential composition and variability analysis for single-cell data.
Proc Natl Acad Sci U S A. 2023;120:e2203828120.
PubMed Abstract available

HUNG TH, So T, Thammavong B, Chamchumroon V, et al
Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods.
Proc Natl Acad Sci U S A. 2023;120:e2301603120.
PubMed Abstract available

MEHROTRA T, Konar D, Pragasam AK, Kumar S, et al
Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis.
Proc Natl Acad Sci U S A. 2023;120:e2305465120.
PubMed Abstract available

RUBINA A, Patel M, Nightingale K, Potts M, et al
ADAM17 targeting by human cytomegalovirus remodels the cell surface proteome to simultaneously regulate multiple immune pathways.
Proc Natl Acad Sci U S A. 2023;120:e2303155120.
PubMed Abstract available

MALINVERNI D, Zamuner S, Rebeaud ME, Barducci A, et al
Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins.
Proc Natl Acad Sci U S A. 2023;120:e2218217120.
PubMed Abstract available

July 2023

FOKKENS L, Rep M
Population genomics reveals meiotic recombination in Fusarium oxysporum.
Proc Natl Acad Sci U S A. 2023;120:e2309677120.
PubMed

DAVIDI L, Gallaher SD, Ben-David E, Purvine SO, et al
Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management.
Proc Natl Acad Sci U S A. 2023;120:e2305495120.
PubMed Abstract available

CHARLES OJ, Venturini C, Gantt S, Atkinson C, et al
Genomic and geographical structure of human cytomegalovirus.
Proc Natl Acad Sci U S A. 2023;120:e2221797120.
PubMed Abstract available

FUJIMURA T, Esteban R, Wickner RB
Genomic fold of a "naked" ssRNA virus is critical for stability and propagation.
Proc Natl Acad Sci U S A. 2023;120:e2309329120.
PubMed

GU Z, Wang L, Dong Q, Xu K, et al
Aberrant LYZ expression in tumor cells serves as the potential biomarker and target for HCC and promotes tumor progression via csGRP78.
Proc Natl Acad Sci U S A. 2023;120:e2215744120.
PubMed Abstract available

GARDNER EM, Bruun-Lund S, Niissalo M, Chantarasuwan B, et al
Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs.
Proc Natl Acad Sci U S A. 2023;120:e2222035120.
PubMed Abstract available

VARGAS R JR, Luna MJ, Freschi L, Marin M, et al
Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex.
Proc Natl Acad Sci U S A. 2023;120:e2301394120.
PubMed Abstract available

SARTORIO MG, Pardue EJ, Scott NE, Feldman MF, et al
Human gut bacteria tailor extracellular vesicle cargo for the breakdown of diet- and host-derived glycans.
Proc Natl Acad Sci U S A. 2023;120:e2306314120.
PubMed Abstract available

FAYYAZ A, Robinson G, Chang PL, Bekele D, et al
Hiding in plain sight: Genome-wide recombination and a dynamic accessory genome drive diversity in Fusarium oxysporum f.sp. ciceris.
Proc Natl Acad Sci U S A. 2023;120:e2220570120.
PubMed Abstract available

June 2023

HASEGAWA N, Techer MA, Adjlane N, Al-Hissnawi MS, et al
Evolutionarily diverse origins of deformed wing viruses in western honey bees.
Proc Natl Acad Sci U S A. 2023;120:e2301258120.
PubMed Abstract available

NOSIL P, Soria-Carrasco V, Villoutreix R, De-la-Mora M, et al
Complex evolutionary processes maintain an ancient chromosomal inversion.
Proc Natl Acad Sci U S A. 2023;120:e2300673120.
PubMed Abstract available

HARRISON LB, Behr MA
Mutation rates and the molecular epidemiology of Mycobacterium abscessus.
Proc Natl Acad Sci U S A. 2023;120:e2307499120.
PubMed

GOMEZ-BAENA G, Pounder KC, Halstead JO, Roberts SA, et al
Unraveling female communication through scent marks in the Norway rat.
Proc Natl Acad Sci U S A. 2023;120:e2300794120.
PubMed Abstract available

KASUGA Y, Ouda R, Watanabe M, Sun X, et al
FBXO11 constitutes a major negative regulator of MHC class II through ubiquitin-dependent proteasomal degradation of CIITA.
Proc Natl Acad Sci U S A. 2023;120:e2218955120.
PubMed Abstract available

XIAO H, Liu Z, Wang N, Long Q, et al
Adaptive and maladaptive introgression in grapevine domestication.
Proc Natl Acad Sci U S A. 2023;120:e2222041120.
PubMed Abstract available

YOUNIS S, Jouneau A, Larsson M, Oudin JF, et al
Ablation of ZC3H11A causes early embryonic lethality and dysregulation of metabolic processes.
Proc Natl Acad Sci U S A. 2023;120:e2216799120.
PubMed Abstract available

May 2023

SHIRAKAWA KT, Sala FA, Miyachiro MM, Job V, et al
Architecture and genomic arrangement of the MurE-MurF bacterial cell wall biosynthesis complex.
Proc Natl Acad Sci U S A. 2023;120:e2219540120.
PubMed Abstract available

GOYCHUK A, Kannan D, Chakraborty AK, Kardar M, et al
Polymer folding through active processes recreates features of genome organization.
Proc Natl Acad Sci U S A. 2023;120:e2221726120.
PubMed Abstract available

MELBY JA, Brown KA, Gregorich ZR, Roberts DS, et al
High sensitivity top-down proteomics captures single muscle cell heterogeneity in large proteoforms.
Proc Natl Acad Sci U S A. 2023;120:e2222081120.
PubMed Abstract available

REITZ CJ, Tavassoli M, Kim DH, Shah S, et al
Proteomics and phosphoproteomics of failing human left ventricle identifies dilated cardiomyopathy-associated phosphorylation of CTNNA3.
Proc Natl Acad Sci U S A. 2023;120:e2212118120.
PubMed Abstract available

SEXTON DL, Hashimi A, Beskrovnaya P, Sibanda L, et al
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis.
Proc Natl Acad Sci U S A. 2023;120:e2303275120.
PubMed Abstract available

April 2023

BARTOLEC TK, Vazquez-Campos X, Norman A, Luong C, et al
Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein-protein interactions in the human cell.
Proc Natl Acad Sci U S A. 2023;120:e2219418120.
PubMed Abstract available

WANG YJ, Tain T, Yu JY, Li J, et al
Genomic and structural basis for evolution of tropane alkaloid biosynthesis.
Proc Natl Acad Sci U S A. 2023;120:e2302448120.
PubMed Abstract available

LLEWELLYN J, Mallikarjun V, Appleton E, Osipova M, et al
Loss of regulation of protein synthesis and turnover underpins an attenuated stress response in senescent human mesenchymal stem cells.
Proc Natl Acad Sci U S A. 2023;120:e2210745120.
PubMed Abstract available

GESESSE CA, Nigir B, de Sousa K, Gianfranceschi L, et al
Genomics-driven breeding for local adaptation of durum wheat is enhanced by farmers' traditional knowledge.
Proc Natl Acad Sci U S A. 2023;120:e2205774119.
PubMed Abstract available

HUANG K, Jahani M, Gouzy J, Legendre A, et al
The genomics of linkage drag in inbred lines of sunflower.
Proc Natl Acad Sci U S A. 2023;120:e2205783119.
PubMed Abstract available

SANCHEZ D, Sadoun SB, Mary-Huard T, Allier A, et al
Improving the use of plant genetic resources to sustain breeding programs' efficiency.
Proc Natl Acad Sci U S A. 2023;120:e2205780119.
PubMed Abstract available

March 2023

LATRILLE T, Rodrigue N, Lartillot N
Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale.
Proc Natl Acad Sci U S A. 2023;120:e2214977120.
PubMed Abstract available

February 2023

SCHMID C, Schiffels S
Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data.
Proc Natl Acad Sci U S A. 2023;120:e2218375120.
PubMed Abstract available

CHUANG TP, Lai WY, Gabre JL, Lind DE, et al
ALK fusion NSCLC oncogenes promote survival and inhibit NK cell responses via SERPINB4 expression.
Proc Natl Acad Sci U S A. 2023;120:e2216479120.
PubMed Abstract available

MANOUCHEHRI N, Salinas VH, Hussain RZ, Stuve O, et al
Distinctive transcriptomic and epigenomic signatures of bone marrow-derived myeloid cells and microglia in CNS autoimmunity.
Proc Natl Acad Sci U S A. 2023;120:e2212696120.
PubMed Abstract available

ZONG W, Rahman T, Zhu L, Zeng X, et al
Transcriptomic congruence analysis for evaluating model organisms.
Proc Natl Acad Sci U S A. 2023;120:e2202584120.
PubMed Abstract available

WERSEBE MJ, Weider LJ
Resurrection genomics provides molecular and phenotypic evidence of rapid adaptation to salinization in a keystone aquatic species.
Proc Natl Acad Sci U S A. 2023;120:e2217276120.
PubMed Abstract available

January 2023

PRESKA STEINBERG A, Silander OK, Kussell E
Correlated substitutions reveal SARS-like coronaviruses recombine frequently with a diverse set of structured gene pools.
Proc Natl Acad Sci U S A. 2023;120:e2206945119.
PubMed Abstract available

STONEKING M, Arias L, Liu D, Oliveira S, et al
Genomic perspectives on human dispersals during the Holocene.
Proc Natl Acad Sci U S A. 2023;120:e2209475119.
PubMed Abstract available

LI X, Yue X, Sepulveda H, Burt RA, et al
OGT controls mammalian cell viability by regulating the proteasome/mTOR/ mitochondrial axis.
Proc Natl Acad Sci U S A. 2023;120:e2218332120.
PubMed Abstract available

FLESKES RE, Cabana GS, Gilmore JK, Juarez C, et al
Community-engaged ancient DNA project reveals diverse origins of 18th-century African descendants in Charleston, South Carolina.
Proc Natl Acad Sci U S A. 2023;120:e2201620120.
PubMed Abstract available

HE X
Culture-based approaches to studying "microbial dark matter".
Proc Natl Acad Sci U S A. 2023;120:e2219691120.
PubMed

CASSEMIRO FAS, Albert JS, Antonelli A, Menegotto A, et al
Landscape dynamics and diversification of the megadiverse South American freshwater fish fauna.
Proc Natl Acad Sci U S A. 2023;120:e2211974120.
PubMed Abstract available

LEA AJ, Garcia A, Arevalo J, Ayroles JF, et al
Natural selection of immune and metabolic genes associated with health in two lowland Bolivian populations.
Proc Natl Acad Sci U S A. 2023;120:e2207544120.
PubMed Abstract available

December 2022

TABILAS C, Iu DS, Daly CWP, Yee Mon KJ, et al
Early microbial exposure shapes adult immunity by altering CD8+ T cell development.
Proc Natl Acad Sci U S A. 2022;119:e2212548119.
PubMed Abstract available

XIE B, Wang J, Nie Y, Tian J, et al
Type IV pili trigger episymbiotic association of Saccharibacteria with its bacterial host.
Proc Natl Acad Sci U S A. 2022;119:e2215990119.
PubMed Abstract available

November 2022

ZOLOTAREV N, Bayer M, Grosschedl R
EBF1 is continuously required for stabilizing local chromatin accessibility in pro-B cells.
Proc Natl Acad Sci U S A. 2022;119:e2210595119.
PubMed Abstract available

BARBIERI C, Blasi DE, Arango-Isaza E, Sotiropoulos AG, et al
A global analysis of matches and mismatches between human genetic and linguistic histories.
Proc Natl Acad Sci U S A. 2022;119:e2122084119.
PubMed Abstract available

KOLESKE ML, McInnes G, Brown JEH, Thomas N, et al
Functional genomics of OCTN2 variants informs protein-specific variant effect predictor for Carnitine Transporter Deficiency.
Proc Natl Acad Sci U S A. 2022;119:e2210247119.
PubMed Abstract available

SCHMITZ LL, Duque V
In utero exposure to the Great Depression is reflected in late-life epigenetic aging signatures.
Proc Natl Acad Sci U S A. 2022;119:e2208530119.
PubMed Abstract available

GIERUS L, Birand A, Bunting MD, Godahewa GI, et al
Leveraging a natural murine meiotic drive to suppress invasive populations.
Proc Natl Acad Sci U S A. 2022;119:e2213308119.
PubMed Abstract available

ATMORE LM, Martinez-Garcia L, Makowiecki D, Andre C, et al
Population dynamics of Baltic herring since the Viking Age revealed by ancient DNA and genomics.
Proc Natl Acad Sci U S A. 2022;119:e2208703119.
PubMed Abstract available

JAMALUDDIN MFB, Ghosh A, Ingle A, Mohammed R, et al
Bovine and human endometrium-derived hydrogels support organoid culture from healthy and cancerous tissues.
Proc Natl Acad Sci U S A. 2022;119:e2208040119.
PubMed Abstract available

October 2022

FALAHATI H, Wu Y, Feuerer V, Simon HG, et al
Proximity proteomics of synaptopodin provides insight into the molecular composition of the spine apparatus of dendritic spines.
Proc Natl Acad Sci U S A. 2022;119:e2203750119.
PubMed Abstract available

HIROOKA S, Itabashi T, Ichinose TM, Onuma R, et al
Life cycle and functional genomics of the unicellular red alga Galdieria for elucidating algal and plant evolution and industrial use.
Proc Natl Acad Sci U S A. 2022;119:e2210665119.
PubMed Abstract available

SCHRAGO CG
Genomic basis of neotropical primate adaptations.
Proc Natl Acad Sci U S A. 2022;119:e2213527119.
PubMed

BANUELOS MM, Zavaleta YJA, Roldan A, Reyes RJ, et al
Associations between forensic loci and expression levels of neighboring genes may compromise medical privacy.
Proc Natl Acad Sci U S A. 2022;119:e2121024119.
PubMed Abstract available

HOGG CJ, Belov K
Reply to DeWoody et al.: Inequitable access to affordable sequencing limits the benefits from population genomic insights.
Proc Natl Acad Sci U S A. 2022;119:e2211129119.
PubMed

LI ML, Wang S, Xu P, Tian HY, et al
Functional genomics analysis reveals the evolutionary adaptation and demographic history of pygmy lorises.
Proc Natl Acad Sci U S A. 2022;119:e2123030119.
PubMed Abstract available

ALAGOZ G, Molz B, Eising E, Schijven D, et al
Using neuroimaging genomics to investigate the evolution of human brain structure.
Proc Natl Acad Sci U S A. 2022;119:e2200638119.
PubMed Abstract available

LI HZ, Yang K, Liao H, Lassen SB, et al
Active antibiotic resistome in soils unraveled by single-cell isotope probing and targeted metagenomics.
Proc Natl Acad Sci U S A. 2022;119:e2201473119.
PubMed Abstract available

CIUFFA R, Uliana F, Mannion J, Mehnert M, et al
Novel biochemical, structural, and systems insights into inflammatory signaling revealed by contextual interaction proteomics.
Proc Natl Acad Sci U S A. 2022;119:e2117175119.
PubMed Abstract available

September 2022

BRENNAN RS, deMayo JA, Dam HG, Finiguerra M, et al
Experimental evolution reveals the synergistic genomic mechanisms of adaptation to ocean warming and acidification in a marine copepod.
Proc Natl Acad Sci U S A. 2022;119:e2201521119.
PubMed Abstract available

DING DY, Li S, Narasimhan B, Tibshirani R, et al
Cooperative learning for multiview analysis.
Proc Natl Acad Sci U S A. 2022;119:e2202113119.
PubMed Abstract available

SAUNDERS JK, McIlvin MR, Dupont CL, Kaul D, et al
Microbial functional diversity across biogeochemical provinces in the central Pacific Ocean.
Proc Natl Acad Sci U S A. 2022;119:e2200014119.
PubMed Abstract available

PASCUAL-TORNER M, Carrero D, Perez-Silva JG, Alvarez-Puente D, et al
Comparative genomics of mortal and immortal cnidarians unveils novel keys behind rejuvenation.
Proc Natl Acad Sci U S A. 2022;119:e2118763119.
PubMed Abstract available

LEBEDIN M, Foglierini M, Khorkova S, Vazquez Garcia C, et al
Different classes of genomic inserts contribute to human antibody diversity.
Proc Natl Acad Sci U S A. 2022;119:e2205470119.
PubMed Abstract available

HLEDIK M, Barton N, Tkacik G
Accumulation and maintenance of information in evolution.
Proc Natl Acad Sci U S A. 2022;119:e2123152119.
PubMed Abstract available

August 2022

DEWOODY JA, Jeon JY, Bickham JW, Heenkenda EJ, et al
The Threatened Species Imperative: Conservation assessments would benefit from population genomic insights.
Proc Natl Acad Sci U S A. 2022;119:e2210685119.
PubMed

FELDMAN HC, Merlini E, Guijas C, DeMeester KE, et al
Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domain.
Proc Natl Acad Sci U S A. 2022;119:e2208457119.
PubMed Abstract available

BYRNE H, Webster TH, Brosnan SF, Izar P, et al
Signatures of adaptive evolution in platyrrhine primate genomes.
Proc Natl Acad Sci U S A. 2022;119:e2116681119.
PubMed Abstract available

ALVES JM, Carneiro M, Day JP, Welch JJ, et al
A single introduction of wild rabbits triggered the biological invasion of Australia.
Proc Natl Acad Sci U S A. 2022;119:e2122734119.
PubMed Abstract available

MOCK F, Kretschmer F, Kriese A, Bocker S, et al
Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks.
Proc Natl Acad Sci U S A. 2022;119:e2122636119.
PubMed Abstract available

TROWBRIDGE AD, Seath CP, Rodriguez-Rivera FP, Li BX, et al
Small molecule photocatalysis enables drug target identification via energy transfer.
Proc Natl Acad Sci U S A. 2022;119:e2208077119.
PubMed Abstract available

CHAVEZ DE, Gronau I, Hains T, Dikow RB, et al
Comparative genomics uncovers the evolutionary history, demography, and molecular adaptations of South American canids.
Proc Natl Acad Sci U S A. 2022;119:e2205986119.
PubMed Abstract available

CAI Z, Lei J, Roeder K
Model-free prediction test with application to genomics data.
Proc Natl Acad Sci U S A. 2022;119:e2205518119.
PubMed Abstract available

GWAK JH, Awala SI, Nguyen NL, Yu WJ, et al
Sulfur and methane oxidation by a single microorganism.
Proc Natl Acad Sci U S A. 2022;119:e2114799119.
PubMed Abstract available

KOILE E, Greenhill SJ, Blasi DE, Bouckaert R, et al
Phylogeographic analysis of the Bantu language expansion supports a rainforest route.
Proc Natl Acad Sci U S A. 2022;119:e2112853119.
PubMed Abstract available

CABRERIZO MJ, Maranon E
Net effect of environmental fluctuations in multiple global-change drivers across the tree of life.
Proc Natl Acad Sci U S A. 2022;119:e2205495119.
PubMed Abstract available

ORLIAC EJ, Trejo Banos D, Ojavee SE, Lall K, et al
Improving GWAS discovery and genomic prediction accuracy in biobank data.
Proc Natl Acad Sci U S A. 2022;119:e2121279119.
PubMed Abstract available

July 2022

STENSETH NC, Andersson L, Hoekstra HE
Gregor Johann Mendel and the development of modern evolutionary biology.
Proc Natl Acad Sci U S A. 2022;119:e2201327119.
PubMed

CHOI YS, Kim MJ, Choi EA, Kim S, et al
Antibody-mediated blockade for galectin-3 binding protein in tumor secretome abrogates PDAC metastasis.
Proc Natl Acad Sci U S A. 2022;119:e2119048119.
PubMed Abstract available

BOMBLIES K, Peichel CL
Genetics of adaptation.
Proc Natl Acad Sci U S A. 2022;119:e2122152119.
PubMed Abstract available

HOEKSTRA HE, Robinson GE
Behavioral genetics and genomics: Mendel's peas, mice, and bees.
Proc Natl Acad Sci U S A. 2022;119:e2122154119.
PubMed Abstract available

HARTL DL
Gregor Johann Mendel: From peasant to priest, pedagogue, and prelate.
Proc Natl Acad Sci U S A. 2022;119:e2121953119.
PubMed Abstract available

PAN M, Morovic W, Hidalgo-Cantabrana C, Roberts A, et al
Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium.
Proc Natl Acad Sci U S A. 2022;119:e2205068119.
PubMed Abstract available

LIN MC, Yu CJ, Lee FS
Phosphorylation of Arl4A/D promotes their binding by the HYPK chaperone for their stable recruitment to the plasma membrane.
Proc Natl Acad Sci U S A. 2022;119:e2207414119.
PubMed Abstract available

HU Y, Satten GA, Hu YJ
LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control.
Proc Natl Acad Sci U S A. 2022;119:e2122788119.
PubMed Abstract available

FANG J, Pietzsch C, Witwit H, Tsaprailis G, et al
Proximity interactome analysis of Lassa polymerase reveals eRF3a/GSPT1 as a druggable target for host-directed antivirals.
Proc Natl Acad Sci U S A. 2022;119:e2201208119.
PubMed Abstract available

BARTON NH
The "New Synthesis".
Proc Natl Acad Sci U S A. 2022;119:e2122147119.
PubMed Abstract available

IRION U, Nusslein-Volhard C
Developmental genetics with model organisms.
Proc Natl Acad Sci U S A. 2022;119:e2122148119.
PubMed Abstract available

BERRY A, Browne J
Mendel and Darwin.
Proc Natl Acad Sci U S A. 2022;119:e2122144119.
PubMed Abstract available

SARDAR D, Chen HC, Reyes A, Varadharajan S, et al
Sox9 directs divergent epigenomic states in brain tumor subtypes.
Proc Natl Acad Sci U S A. 2022;119:e2202015119.
PubMed Abstract available

HERNANDEZ J, Kaun KR
Alcohol, neuronal plasticity, and mitochondrial trafficking.
Proc Natl Acad Sci U S A. 2022;119:e2208744119.
PubMed

MCAVOY A, Wakeley J
Evaluating the structure-coefficient theorem of evolutionary game theory.
Proc Natl Acad Sci U S A. 2022;119:e2119656119.
PubMed Abstract available

June 2022

SMALL CM, Healey HM, Currey MC, Beck EA, et al
Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes.
Proc Natl Acad Sci U S A. 2022;119:e2119602119.
PubMed Abstract available

MARKOWITZ RHG, LaBella AL, Shi M, Rokas A, et al
Microbiome-associated human genetic variants impact phenome-wide disease risk.
Proc Natl Acad Sci U S A. 2022;119:e2200551119.
PubMed Abstract available

LILLIE M, Hill J, Pettersson ME, Jern P, et al
Expansion of a retrovirus lineage in the koala genome.
Proc Natl Acad Sci U S A. 2022;119:e2201844119.
PubMed Abstract available

GILBERT E, Shanmugam A, Cavalleri GL
Revealing the recent demographic history of Europe via haplotype sharing in the UK Biobank.
Proc Natl Acad Sci U S A. 2022;119:e2119281119.
PubMed Abstract available

SIMONETTI B, Daly JL, Simon-Gracia L, Klein K, et al
ESCPE-1 mediates retrograde endosomal sorting of the SARS-CoV-2 host factor Neuropilin-1.
Proc Natl Acad Sci U S A. 2022;119:e2201980119.
PubMed Abstract available

CAI R, Ren J, Guo M, Wei T, et al
Dynamic intracellular exchange of nanomaterials' protein corona perturbs proteostasis and remodels cell metabolism.
Proc Natl Acad Sci U S A. 2022;119:e2200363119.
PubMed Abstract available

May 2022

HORVATH S, Lu AT, Haghani A, Zoller JA, et al
DNA methylation clocks for dogs and humans.
Proc Natl Acad Sci U S A. 2022;119:e2120887119.
PubMed Abstract available

MCHARG S, Booth L, Perveen R, Riba Garcia I, et al
Mast cell infiltration of the choroid and protease release are early events in age-related macular degeneration associated with genetic risk at both chromosomes 1q32 and 10q26.
Proc Natl Acad Sci U S A. 2022;119:e2118510119.
PubMed Abstract available

LIU X, Zhang S, Cai Z, Kuang Z, et al
Genomic insights into zokors' phylogeny and speciation in China.
Proc Natl Acad Sci U S A. 2022;119:e2121819119.
PubMed Abstract available

SINGH A, Spitzer MH, Joy JP, Kaileh M, et al
Postmitotic G1 phase survivin drives mitogen-independent cell division of B lymphocytes.
Proc Natl Acad Sci U S A. 2022;119:e2115567119.
PubMed Abstract available

RIVOLLAT M, Thomas A, Ghesquiere E, Rohrlach AB, et al
Ancient DNA gives new insights into a Norman Neolithic monumental cemetery dedicated to male elites.
Proc Natl Acad Sci U S A. 2022;119:e2120786119.
PubMed Abstract available

April 2022

ROSE TD, Bechtler T, Ciora OA, Anh Lilian Le K, et al
MoSBi: Automated signature mining for molecular stratification and subtyping.
Proc Natl Acad Sci U S A. 2022;119:e2118210119.
PubMed Abstract available

MILLS MC, Mathieson I
The challenge of detecting recent natural selection in human populations.
Proc Natl Acad Sci U S A. 2022;119:e2203237119.
PubMed

MARCINIAK S, Bergey CM, Silva AM, Haluszko A, et al
An integrative skeletal and paleogenomic analysis of stature variation suggests relatively reduced health for early European farmers.
Proc Natl Acad Sci U S A. 2022;119:e2106743119.
PubMed Abstract available

BREUSING C, Genetti M, Russell SL, Corbett-Detig RB, et al
Horizontal transmission enables flexible associations with locally adapted symbiont strains in deep-sea hydrothermal vent symbioses.
Proc Natl Acad Sci U S A. 2022;119:e2115608119.
PubMed Abstract available

March 2022

LANDIS MJ, Quintero I, Munoz MM, Zapata F, et al
Phylogenetic inference of where species spread or split across barriers.
Proc Natl Acad Sci U S A. 2022;119:e2116948119.
PubMed Abstract available

RAO R, Leibler S
Evolutionary dynamics, evolutionary forces, and robustness: A nonequilibrium statistical mechanics perspective.
Proc Natl Acad Sci U S A. 2022;119:e2112083119.
PubMed Abstract available

SEVERSON AL, Byrd BF, Mallott EK, Owings AC, et al
Ancient and modern genomics of the Ohlone Indigenous population of California.
Proc Natl Acad Sci U S A. 2022;119:e2111533119.
PubMed Abstract available

WU W, Gao YD, Jiang DC, Lei J, et al
Genomic adaptations for arboreal locomotion in Asian flying treefrogs.
Proc Natl Acad Sci U S A. 2022;119:e2116342119.
PubMed Abstract available

KRAINC T, Fuentes A
Genetic ancestry in precision medicine is reshaping the race debate.
Proc Natl Acad Sci U S A. 2022;119:e2203033119.
PubMed

KOLDAEVA A, Tsai HF, Shen AQ, Pigolotti S, et al
Population genetics in microchannels.
Proc Natl Acad Sci U S A. 2022;119:e2120821119.
PubMed Abstract available

ZHANG S, Nelson OD, Price IR, Zhu C, et al
Long-chain fatty acyl coenzyme A inhibits NME1/2 and regulates cancer metastasis.
Proc Natl Acad Sci U S A. 2022;119:e2117013119.
PubMed Abstract available

BARBIERI S, Nurni Ravi A, Griffin EE, Gotta M, et al
Modeling protein dynamics in Caenorhabditis elegans embryos reveals that the PLK-1 gradient relies on weakly coupled reaction-diffusion mechanisms.
Proc Natl Acad Sci U S A. 2022;119:e2114205119.
PubMed Abstract available

LU Q, Zhang Y, Hellner J, Giannini C, et al
Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between brassinosteroid and auxin signaling.
Proc Natl Acad Sci U S A. 2022;119:e2118220119.
PubMed Abstract available

MCCULLOUGH EL, Whittington E, Singh A, Pitnick S, et al
The life history of Drosophila sperm involves molecular continuity between male and female reproductive tracts.
Proc Natl Acad Sci U S A. 2022;119:e2119899119.
PubMed Abstract available

BOHL JA, Lay S, Chea S, Ahyong V, et al
Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system.
Proc Natl Acad Sci U S A. 2022;119:e2115285119.
PubMed Abstract available

KLEINMAN-RUIZ D, Lucena-Perez M, Villanueva B, Fernandez J, et al
Purging of deleterious burden in the endangered Iberian lynx.
Proc Natl Acad Sci U S A. 2022;119:e2110614119.
PubMed Abstract available

FERDOSI S, Tangeysh B, Brown TR, Everley PA, et al
Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions.
Proc Natl Acad Sci U S A. 2022;119:e2106053119.
PubMed Abstract available

WINKLER J, Liu P, Phong K, Hinrichs JH, et al
Bisphenol A replacement chemicals, BPF and BPS, induce protumorigenic changes in human mammary gland organoid morphology and proteome.
Proc Natl Acad Sci U S A. 2022;119:e2115308119.
PubMed Abstract available

WEIGERT MUNOZ A, Hoyer E, Schumacher K, Grognot M, et al
Eukaryotic catecholamine hormones influence the chemotactic control of Vibrio campbellii by binding to the coupling protein CheW.
Proc Natl Acad Sci U S A. 2022;119:e2118227119.
PubMed Abstract available

GOVERNA V, Talbot H, Goncalves de Oliveira K, Cerezo-Magana M, et al
Landscape of surfaceome and endocytome in human glioma is divergent and depends on cellular spatial organization.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

February 2022

SODELAND M, Jentoft S, Jorde PE, Mattingsdal M, et al
Stabilizing selection on Atlantic cod supergenes through a millennium of extensive exploitation.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

DULIAS K, Foody MGB, Justeau P, Silva M, et al
Ancient DNA at the edge of the world: Continental immigration and the persistence of Neolithic male lineages in Bronze Age Orkney.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

WAN J, Browne PJ, Hershey DM, Montabana E, et al
A protease-mediated switch regulates the growth of magnetosome organelles in Magnetospirillum magneticum.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

CHAVEZ MONTES RA, Haber A, Pardo J, Powell RF, et al
A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

MADRIGAL JL, Schoepp NG, Xu L, Powell CS, et al
Characterizing cell interactions at scale with made-to-order droplet ensembles (MODEs).
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

January 2022

SHERKOW JS, Barker KB, Braverman I, Cook-Deegan R, et al
Ethical, legal, and social issues in the Earth BioGenome Project.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

SINGHAL S, Colli GR, Grundler MR, Costa GC, et al
No link between population isolation and speciation rate in squamate reptiles.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

CONTRERAS-LOPEZ O, Vidal EA, Riveras E, Alvarez JM, et al
Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

MC CARTNEY AM, Anderson J, Liggins L, Hudson ML, et al
Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

STEPHAN T, Burgess SM, Cheng H, Danko CG, et al
Darwinian genomics and diversity in the tree of life.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

HOGG CJ, Ottewell K, Latch P, Rossetto M, et al
Threatened Species Initiative: Empowering conservation action using genomic resources.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

Sequence locally, think globally: The Darwin Tree of Life Project.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

HUDDART JEA, Crawford AJ, Luna-Tapia AL, Restrepo S, et al
EBP-Colombia and the bioeconomy: Genomics in the service of biodiversity conservation and sustainable development.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

KRESS WJ, Soltis DE, Kersey PJ, Wegrzyn JL, et al
Green plant genomes: What we know in an era of rapidly expanding opportunities.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

LAWNICZAK MKN, Durbin R, Flicek P, Lindblad-Toh K, et al
Standards recommendations for the Earth BioGenome Project.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

BLAXTER M, Archibald JM, Childers AK, Coddington JA, et al
Why sequence all eukaryotes?
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

LEWIN HA, Richards S, Lieberman Aiden E, Allende ML, et al
The Earth BioGenome Project 2020: Starting the clock.
Proc Natl Acad Sci U S A. 2022;119.
PubMed

KANAGARAJ R, Mitter R, Kantidakis T, Edwards MM, et al
Integrated genome and transcriptome analyses reveal the mechanism of genome instability in ataxia with oculomotor apraxia 2.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

SHIGENOBU S, Hayashi Y, Watanabe D, Tokuda G, et al
Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus: Gene duplication facilitates social evolution.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

SAKAI HD, Nur N, Kato S, Yuki M, et al
Insight into the symbiotic lifestyle of DPANN archaea revealed by cultivation and genome analyses.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

BELLINGER MR, Wei J, Hartmann U, Cadiou H, et al
Conservation of magnetite biomineralization genes in all domains of life and implications for magnetic sensing.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

LIU Y, Vasina VV, Kraner ME, Peters WS, et al
Proteomics of isolated sieve tubes from Nicotiana tabacum: sieve element-specific proteins reveal differentiation of the endomembrane system.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

WILLI Y, Kristensen TN, Sgro CM, Weeks AR, et al
Conservation genetics as a management tool: The five best-supported paradigms to assist the management of threatened species.
Proc Natl Acad Sci U S A. 2022;119.
PubMed Abstract available

December 2021

GUINDON S, De Maio N
Accounting for spatial sampling patterns in Bayesian phylogeography.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

HOTALING S, Kelley JL, Frandsen PB
Toward a genome sequence for every animal: Where are we now?
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SONG JHT, Grant RL, Behrens VC, Kucka M, et al
Genetic studies of human-chimpanzee divergence using stem cell fusions.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

JASPERS C, Ehrlich M, Pujolar JM, Kunzel S, et al
Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

MA Q, Caillier SJ, Muzic S, Wilson MR, et al
Specific hypomethylation programs underpin B cell activation in early multiple sclerosis.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

CHENG Y, Miller MJ, Zhang D, Xiong Y, et al
Parallel genomic responses to historical climate change and high elevation in East Asian songbirds.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

KHAN A, Patel K, Shukla H, Viswanathan A, et al
Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

VANDEWOUDE S, Vousden KH
A celebration of the life of George Vande Woude.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

RYBARSKI JR, Hu K, Hill AM, Wilke CO, et al
Metagenomic discovery of CRISPR-associated transposons.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

November 2021

VASHISTH M, Cho S, Irianto J, Xia Y, et al
Scaling concepts in 'omics: Nuclear lamin-B scales with tumor growth and often predicts poor prognosis, unlike fibrosis.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

AHERN OM, Whittaker KA, Williams TC, Hunt DE, et al
Host genotype structures the microbiome of a globally dispersed marine phytoplankton.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

KARDOS M, Armstrong EE, Fitzpatrick SW, Hauser S, et al
The crucial role of genome-wide genetic variation in conservation.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

LEE J, Lim C, Han TH, Andreani T, et al
The E3 ubiquitin ligase adaptor Tango10 links the core circadian clock to neuropeptide and behavioral rhythms.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

CHEN W, Wu Y, Fritschi FB, Juenger TE, et al
The genetic basis of the root economics spectrum in a perennial grass.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

XU C, Fang X, Lu T, Dean C, et al
Antagonistic cotranscriptional regulation through ARGONAUTE1 and the THO/TREX complex orchestrates FLC transcriptional output.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

BIRDSEYE D, de Boer LA, Bai H, Zhou P, et al
Plant height heterosis is quantitatively associated with expression levels of plastid ribosomal proteins.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

LAGUNAS-ROBLES G, Purcell J, Brelsford A
Linked supergenes underlie split sex ratio and social organization in an ant.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

HASEGAWA Y, Struhl K
Different SP1 binding dynamics at individual genomic loci in human cells.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

DELMONT TO
Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ESHEL G, Araus V, Undurraga S, Soto DC, et al
Plant ecological genomics at the limits of life in the Atacama Desert.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

MOLIMAU-SAMASONI S, Woolner VH, Foliga ST, Robichon K, et al
Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine "matalafi".
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

QIAO Q, Edger PP, Xue L, Qiong, et al
Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.).
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
Reply to Briggs et al.: Genomic integration and expression of SARS-CoV-2 sequences can explain prolonged or recurrent viral RNA detection.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

October 2021

VIEGAS J
Profile of Jennifer Marshall Graves.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

GARCIA-SASTRE A
Genomics serology to inform therapies and vaccines for arthritogenic alphaviruses.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

September 2021

FEUERBORN TR, Carmagnini A, Losey RJ, Nomokonova T, et al
Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SAGAR V, Kaelin CB, Natesh M, Reddy PA, et al
High frequency of an otherwise rare phenotype in a small and isolated tiger population.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SIX C, Ratin M, Marie D, Corre E, et al
Marine Synechococcus picocyanobacteria: Light utilization across latitudes.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

HAGEDORN M, Page CA, O'Neil KL, Flores DM, et al
Assisted gene flow using cryopreserved sperm in critically endangered coral.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

COPE OL, Keefover-Ring K, Kruger EL, Lindroth RL, et al
Growth-defense trade-offs shape population genetic composition in an iconic forest tree species.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

NEVES DM, Kerkhoff AJ, Echeverria-Londono S, Merow C, et al
The adaptive challenge of extreme conditions shapes evolutionary diversity of plant assemblages at continental scales.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

BUTTNER H, Niehs SP, Vandelannoote K, Cseresnyes Z, et al
Bacterial endosymbionts protect beneficial soil fungus from nematode attack.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

YUAN Y, Zhang Y, Zhang P, Liu C, et al
Comparative genomics provides insights into the aquatic adaptations of mammals.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

CHOI JY, Dai X, Alam O, Peng JZ, et al
Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ZHU Z, Fan Y, Kong Y, Lv J, et al
DeepLINK: Deep learning inference using knockoffs with applications to genomics.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

FLEISCHER V, Gonzalez-Escamilla G, Ciolac D, Albrecht P, et al
Translational value of choroid plexus imaging for tracking neuroinflammation in mice and humans.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SYNEK L, Pleskot R, Sekeres J, Serrano N, et al
Plasma membrane phospholipid signature recruits the plant exocyst complex via the EXO70A1 subunit.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

BRAMANTI B, Wu Y, Yang R, Cui Y, et al
Assessing the origins of the European Plagues following the Black Death: A synthesis of genomic, historical, and ecological information.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

KARS ME, Basak AN, Onat OE, Bilguvar K, et al
The genetic structure of the Turkish population reveals high levels of variation and admixture.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

August 2021

HO CM, Jih J, Lai M, Li X, et al
Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

NELSON DL, Caskey CT
Stephen T. Warren: Human geneticist who advanced understanding of mutational mechanisms and developmental disorders.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

BIRZU G, Hallatschek O, Korolev KS
Genealogical structure changes as range expansions transition from pushed to pulled.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

TOCZYDLOWSKI RH, Liggins L, Gaither MR, Anderson TJ, et al
Poor data stewardship will hinder global genetic diversity surveillance.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

TRIPODI P, Rabanus-Wallace MT, Barchi L, Kale S, et al
Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
Response to Parry et al.: Strong evidence for genomic integration of SARS-CoV-2 sequences and expression in patient tissues.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

LEE S, Sieradzki ET, Nicolas AM, Walker RL, et al
Methane-derived carbon flows into host-virus networks at different trophic levels in soil.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

WHEAT A, Yu C, Wang X, Burke AM, et al
Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

QI Y, Nepal KK, Blodgett JAV
A comparative metabologenomic approach reveals mechanistic insights into Streptomyces antibiotic crypticity.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ROBERTS KINGMAN GA, Lee D, Jones FC, Desmet D, et al
Longer or shorter spines: Reciprocal trait evolution in stickleback via triallelic regulatory changes in Stanniocalcin2a.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

July 2021

RAVINDRAN S
Profile of Patrick Cramer.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

DAVESNE D, Friedman M, Schmitt AD, Fernandez V, et al
Fossilized cell structures identify an ancient origin for the teleost whole-genome duplication.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

MITCHELL KJ
Ancient DNA from the koala lemur puts Madagascar on the paleogenomic map.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

RODRIGUES JA, Hsieh PH, Ruan D, Nishimura T, et al
Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

OSVATIC JT, Wilkins LGE, Leibrecht L, Leray M, et al
Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

LEONARD MM, Valitutti F, Karathia H, Pujolassos M, et al
Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

VIEGAS J
Profile of Claude Desplan.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

ROYCROFT E, MacDonald AJ, Moritz C, Moussalli A, et al
Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

June 2021

DEVIESE T, Abrams G, Hajdinjak M, Pirson S, et al
Reply to Van Peer: Direct radiocarbon dating and ancient genomic analysis reveal the true age of the Neanderthals at Spy Cave.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

MARCINIAK S, Mughal MR, Godfrey LR, Bankoff RJ, et al
Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant, "subfossil" koala lemur Megaladapis edwardsi.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

BURKE EJ, Rodda SS, Lund SR, Sun Z, et al
Phage-encoded ten-eleven translocation dioxygenase (TET) is active in C5-cytosine hypermodification in DNA.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

WILSON RM, Tfaily MM, Kolton M, Johnston ER, et al
Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

KONOPELSKI SNAVELY SE, Susman MW, Kunz RC, Tan J, et al
Proteomic analysis identifies the E3 ubiquitin ligase Pdzrn3 as a regulatory target of Wnt5a-Ror signaling.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

LIU Y, Zeng R, Wang R, Weng Y, et al
Spatiotemporally resolved subcellular phosphoproteomics.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

DALY KG, Mattiangeli V, Hare AJ, Davoudi H, et al
Herded and hunted goat genomes from the dawn of domestication in the Zagros Mountains.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

BAIRD HP, Shin S, Oberprieler RG, Hulle M, et al
Fifty million years of beetle evolution along the Antarctic Polar Front.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

HUDSON J, Castilla JC, Teske PR, Beheregaray LB, et al
Genomics-informed models reveal extensive stretches of coastline under threat by an ecologically dominant invasive species.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

TISZA MJ, Buck CB
A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

FRISTOE TS, Chytry M, Dawson W, Essl F, et al
Dimensions of invasiveness: Links between local abundance, geographic range size, and habitat breadth in Europe's alien and native floras.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

May 2021

DROTT MT, Rush TA, Satterlee TR, Giannone RJ, et al
Microevolution in the pansecondary metabolome of Aspergillus flavus and its potential macroevolutionary implications for filamentous fungi.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

DEWITT WS, Harris KD, Ragsdale AP, Harris K, et al
Nonparametric coalescent inference of mutation spectrum history and demography.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

BOHUTINSKA M, Vlcek J, Yair S, Laenen B, et al
Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

REBEAUD ME, Mallik S, Goloubinoff P, Tawfik DS, et al
On the evolution of chaperones and cochaperones and the expansion of proteomes across the Tree of Life.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

DAVIS TH
Profile of Scott Edwards.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

RICHARDS EJ, McGirr JA, Wang JR, St John ME, et al
A vertebrate adaptive radiation is assembled from an ancient and disjunct spatiotemporal landscape.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

TAKUSAGAWA M, Kobayashi Y, Fukao Y, Hidaka K, et al
HBD1 protein with a tandem repeat of two HMG-box domains is a DNA clip to organize chloroplast nucleoids in Chlamydomonas reinhardtii.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ALMEIDA DD, Viala VL, Nachtigall PG, Broe M, et al
Tracking the recruitment and evolution of snake toxins using the evolutionary context provided by the Bothrops jararaca genome.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ANDERSON SAS, Weir JT
Character displacement drives trait divergence in a continental fauna.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

HUTCHINGS JA, Kuparinen A
Throwing down a genomic gauntlet on fisheries-induced evolution.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

HAHN M, Covarrubias-Pinto A, Herhaus L, Satpathy S, et al
SIK2 orchestrates actin-dependent host response upon Salmonella infection.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

PARINS-FUKUCHI C, Stull GW, Smith SA
Phylogenomic conflict coincides with rapid morphological innovation.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ROBEY MT, Caesar LK, Drott MT, Keller NP, et al
An interpreted atlas of biosynthetic gene clusters from 1,000 fungal genomes.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SWIFT CL, Louie KB, Bowen BP, Olson HM, et al
Anaerobic gut fungi are an untapped reservoir of natural products.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SCHUBERT MG, Goodman DB, Wannier TM, Kaur D, et al
High-throughput functional variant screens via in vivo production of single-stranded DNA.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

PALLARES RM, Faulkner D, An DD, Hebert S, et al
Genome-wide toxicogenomic study of the lanthanides sheds light on the selective toxicity mechanisms associated with critical materials.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

WALKER AA, Robinson SD, Paluzzi JV, Merritt DJ, et al
Production, composition, and mode of action of the painful defensive venom produced by a limacodid caterpillar, Doratifera vulnerans.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

April 2021

EVERSON KM, Gray LN, Jones AG, Lawrence NM, et al
Geography is more important than life history in the recent diversification of the tiger salamander complex.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ZENG Y, Li B, Ji C, Feng L, et al
A unique AtSar1D-AtRabD2a nexus modulates autophagosome biogenesis in Arabidopsis thaliana.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

KLING MM, Ackerly DD
Global wind patterns shape genetic differentiation, asymmetric gene flow, and genetic diversity in trees.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

HOLDING ML, Strickland JL, Rautsaw RM, Hofmann EP, et al
Phylogenetically diverse diets favor more complex venoms in North American pitvipers.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SCHAUDER DM, Shen J, Chen Y, Kasmani MY, et al
E2A-regulated epigenetic landscape promotes memory CD8 T cell differentiation.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

AHMED F
Profile of Howard Y. Chang.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

WU KE, Yost KE, Chang HY, Zou J, et al
BABEL enables cross-modality translation between multiomic profiles at single-cell resolution.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

CAPRILES JM, Santoro CM, George RJ, Flores Bedregal E, et al
Pre-Columbian transregional captive rearing of Amazonian parrots in the Atacama Desert.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

PALACIOS-FLORES K, Garcia-Sotelo J, Castillo A, Uribe C, et al
Perfect Match Genomic Landscape strategy: Refinement and customization of reference genomes.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

March 2021

GENG J, Ji B, Li G, Lopez-Isunza F, et al
CODY enables quantitatively spatiotemporal predictions on in vivo gut microbial variability induced by diet intervention.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

LARENA M, Sanchez-Quinto F, Sjodin P, McKenna J, et al
Multiple migrations to the Philippines during the last 50,000 years.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

DEVIESE T, Abrams G, Hajdinjak M, Pirson S, et al
Reevaluating the timing of Neanderthal disappearance in Northwest Europe.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

KAWAKUBO S, Gao F, Li S, Tan Z, et al
Genomic analysis of the brassica pathogen turnip mosaic potyvirus reveals its spread along the former trade routes of the Silk Road.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SINGH-BABAK SD, Babak T, Fraser HB, Johnson AD, et al
Lineage-specific selection and the evolution of virulence in the Candida clade.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

WEISSMAN JL, Hou S, Fuhrman JA
Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

RAYO J, Gregor R, Jacob NT, Dandela R, et al
Immunoediting role for major vault protein in apoptotic signaling induced by bacterial N-acyl homoserine lactones.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

XIA K, Hagan JT, Fu L, Sheetz BS, et al
Synthetic heparan sulfate standards and machine learning facilitate the development of solid-state nanopore analysis.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ANDERSEN SB, Schluter J
A metagenomics approach to investigate microbiome sociobiology.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

WARD BA, Cael BB, Collins S, Young CR, et al
Selective constraints on global plankton dispersal.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

TEIXEIRA JC, Huber CD
The inflated significance of neutral genetic diversity in conservation genetics.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

NADEAU SA, Vaughan TG, Scire J, Huisman JS, et al
The origin and early spread of SARS-CoV-2 in Europe.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

PLESS E, Saarman NP, Powell JR, Caccone A, et al
A machine-learning approach to map landscape connectivity in Aedes aegypti with genetic and environmental data.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

February 2021

VIEGAS J
Profile of Mark Stoneking.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

LUND-HANSEN KK, Olito C, Morrow EH, Abbott JK, et al
Sexually antagonistic coevolution between the sex chromosomes of Drosophila melanogaster.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ORKIN JD, Montague MJ, Tejada-Martinez D, de Manuel M, et al
The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ZHANG W, Xie C, Ullrich K, Zhang YE, et al
The mutational load in natural populations is significantly affected by high primary rates of retroposition.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

CARD KJ, Thomas MD, Graves JL Jr, Barrick JE, et al
Genomic evolution of antibiotic resistance is contingent on genetic background following a long-term experiment with Escherichia coli.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

January 2021

ENBODY ED, Pettersson ME, Sprehn CG, Palm S, et al
Ecological adaptation in European eels is based on phenotypic plasticity.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

BAKHTIN Y, Katsnelson MI, Wolf YI, Koonin EV, et al
Evolution in the weak-mutation limit: Stasis periods punctuated by fast transitions between saddle points on the fitness landscape.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

LEVINE ZG, Potter SC, Joiner CM, Fei GQ, et al
Mammalian cell proliferation requires noncatalytic functions of O-GlcNAc transferase.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

LIU J, Jang JY, Pirooznia M, Liu S, et al
The secretome mouse provides a genetic platform to delineate tissue-specific in vivo secretion.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

TENA J, Lebrilla CB
Glycomic profiling and the mammalian brain.
Proc Natl Acad Sci U S A. 2021;118.
PubMed

WHITE MA, Bonfini A, Wolfner MF, Buchon N, et al
Drosophila melanogaster sex peptide regulates mated female midgut morphology and physiology.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

ZHOU L, Miller C, Miraglia LJ, Romero A, et al
A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

SARBANES SL, Blomen VA, Lam E, Heissel S, et al
E3 ubiquitin ligase Mindbomb 1 facilitates nuclear delivery of adenovirus genomes.
Proc Natl Acad Sci U S A. 2021;118.
PubMed Abstract available

December 2020

TAOUFIQ Z, Ninov M, Villar-Briones A, Wang HY, et al
Hidden proteome of synaptic vesicles in the mammalian brain.
Proc Natl Acad Sci U S A. 2020;117:33586-33596.
PubMed Abstract available

RINCON-SANDOVAL M, Duarte-Ribeiro E, Davis AM, Santaquiteria A, et al
Evolutionary determinism and convergence associated with water-column transitions in marine fishes.
Proc Natl Acad Sci U S A. 2020;117:33396-33403.
PubMed Abstract available

AZAR B
Profile of Haig H. Kazazian Jr.
Proc Natl Acad Sci U S A. 2020;117:32185-32188.
PubMed

CONCILLI M, Petruzzelli R, Parisi S, Catalano F, et al
Pharmacoproteomics pinpoints HSP70 interaction for correction of the most frequent Wilson disease-causing mutant of ATP7B.
Proc Natl Acad Sci U S A. 2020;117:32453-32463.
PubMed Abstract available

LANDY JA, Oschmann A, Munch SB, Walsh MR, et al
Ancestral genetic variation in phenotypic plasticity underlies rapid evolutionary changes in resurrected populations of waterfleas.
Proc Natl Acad Sci U S A. 2020;117:32535-32544.
PubMed Abstract available

LI K, Zhang S, Song X, Weyrich A, et al
Genome evolution of blind subterranean mole rats: Adaptive peripatric versus sympatric speciation.
Proc Natl Acad Sci U S A. 2020;117:32499-32508.
PubMed Abstract available

BORDA V, Alvim I, Mendes M, Silva-Carvalho C, et al
The genetic structure and adaptation of Andean highlanders and Amazonians are influenced by the interplay between geography and culture.
Proc Natl Acad Sci U S A. 2020;117:32557-32565.
PubMed Abstract available

HELMSTETTER AJ, Bethune K, Kamdem NG, Sonke B, et al
Individualistic evolutionary responses of Central African rain forest plants to Pleistocene climatic fluctuations.
Proc Natl Acad Sci U S A. 2020;117:32509-32518.
PubMed Abstract available

MARTINSON VG, Gawryluk RMR, Gowen BE, Curtis CI, et al
Multiple origins of obligate nematode and insect symbionts by a clade of bacteria closely related to plant pathogens.
Proc Natl Acad Sci U S A. 2020;117:31979-31986.
PubMed Abstract available

RAVINDRAN S
Profile of Se-Jin Lee.
Proc Natl Acad Sci U S A. 2020;117:30870-30872.
PubMed

YANG HC, Chen CH, Wang JH, Liao HC, et al
Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associations.
Proc Natl Acad Sci U S A. 2020;117:30679-30686.
PubMed Abstract available

AUNINS TR, Erickson KE, Chatterjee A
Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli.
Proc Natl Acad Sci U S A. 2020;117:30699-30709.
PubMed Abstract available

BISCHOF R, Milleret C, Dupont P, Chipperfield J, et al
Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring.
Proc Natl Acad Sci U S A. 2020;117:30531-30538.
PubMed Abstract available

November 2020

ZHANG H, Zoued A, Liu X, Sit B, et al
Type I interferon remodels lysosome function and modifies intestinal epithelial defense.
Proc Natl Acad Sci U S A. 2020;117:29862-29871.
PubMed Abstract available

CHEN D, Zhang Q, Tang W, Huang Z, et al
The evolutionary origin and domestication history of goldfish (Carassius auratus).
Proc Natl Acad Sci U S A. 2020;117:29775-29785.
PubMed Abstract available

CLEVES PA, Tinoco AI, Bradford J, Perrin D, et al
Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.
Proc Natl Acad Sci U S A. 2020;117:28899-28905.
PubMed Abstract available

VIEGAS J
Profile of Masayori Inouye.
Proc Natl Acad Sci U S A. 2020;117:28543-28545.
PubMed

LEE J, Ha S, Kim M, Kim SW, et al
Spatial and temporal diversity of glycome expression in mammalian brain.
Proc Natl Acad Sci U S A. 2020;117:28743-28753.
PubMed Abstract available

KIM J, Rosenberg NA, Palacios JA
Distance metrics for ranked evolutionary trees.
Proc Natl Acad Sci U S A. 2020;117:28876-28886.
PubMed Abstract available

EPSTEIN JH, Anthony SJ, Islam A, Kilpatrick AM, et al
Nipah virus dynamics in bats and implications for spillover to humans.
Proc Natl Acad Sci U S A. 2020;117:29190-29201.
PubMed Abstract available

KOZLENKOV A, Vermunt MW, Apontes P, Li J, et al
Evolution of regulatory signatures in primate cortical neurons at cell-type resolution.
Proc Natl Acad Sci U S A. 2020;117:28422-28432.
PubMed Abstract available

ROMERO IC, Kong S, Fowlkes CC, Jaramillo C, et al
Improving the taxonomy of fossil pollen using convolutional neural networks and superresolution microscopy.
Proc Natl Acad Sci U S A. 2020;117:28496-28505.
PubMed Abstract available

STOCKLEY P, Franco C, Claydon AJ, Davidson A, et al
Revealing mechanisms of mating plug function under sexual selection.
Proc Natl Acad Sci U S A. 2020;117:27465-27473.
PubMed Abstract available

CAO K, Ugarenko M, Ozark PA, Wang J, et al
DOT1L-controlled cell-fate determination and transcription elongation are independent of H3K79 methylation.
Proc Natl Acad Sci U S A. 2020;117:27365-27373.
PubMed Abstract available

SHIBL AA, Isaac A, Ochsenkuhn MA, Cardenas A, et al
Diatom modulation of select bacteria through use of two unique secondary metabolites.
Proc Natl Acad Sci U S A. 2020;117:27445-27455.
PubMed Abstract available

SHENG X, Qiu C, Liu H, Gluck C, et al
Systematic integrated analysis of genetic and epigenetic variation in diabetic kidney disease.
Proc Natl Acad Sci U S A. 2020 Nov 3. pii: 2005905117.
PubMed Abstract available

October 2020

OIKONOMOU P, Salatino R, Tavazoie S
In vivo mRNA display enables large-scale proteomics by next generation sequencing.
Proc Natl Acad Sci U S A. 2020;117:26710-26718.
PubMed Abstract available

BUHLMANN P
Toward causality and improving external validity.
Proc Natl Acad Sci U S A. 2020;117:25963-25965.
PubMed

CARRILLO JD, Faurby S, Silvestro D, Zizka A, et al
Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
Proc Natl Acad Sci U S A. 2020;117:26281-26287.
PubMed Abstract available

CHEN J, Lu L, Robb SMC, Collin M, et al
Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.
Proc Natl Acad Sci U S A. 2020;117:26288-26297.
PubMed Abstract available

HAN J, Wang S, Yeung K, Yang D, et al
Proteome-wide effects of naphthalene-derived secondary organic aerosol in BEAS-2B cells are caused by short-lived unsaturated carbonyls.
Proc Natl Acad Sci U S A. 2020;117:25386-25395.
PubMed Abstract available

HEINDEL DW, Koppolu S, Zhang Y, Kasper B, et al
Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity.
Proc Natl Acad Sci U S A. 2020 Oct 12. pii: 2008203117.
PubMed Abstract available

RENNER SS
Bitter gourd from Africa expanded to Southeast Asia and was domesticated there: A new insight from parallel studies.
Proc Natl Acad Sci U S A. 2020;117:24630-24631.
PubMed

MATSUMURA H, Hsiao MC, Lin YP, Toyoda A, et al
Reply to Renner: Meticulous investigation, not sequencing effort, leads to robust conclusion.
Proc Natl Acad Sci U S A. 2020;117:24632-24633.
PubMed

ANDERSON KM, Collins MA, Kong R, Fang K, et al
Convergent molecular, cellular, and cortical neuroimaging signatures of major depressive disorder.
Proc Natl Acad Sci U S A. 2020;117:25138-25149.
PubMed Abstract available

NGO D, Wen D, Gao Y, Keyes MJ, et al
Circulating testican-2 is a podocyte-derived marker of kidney health.
Proc Natl Acad Sci U S A. 2020;117:25026-25035.
PubMed Abstract available

MCWILLIAM HEG, Mak JYW, Awad W, Zorkau M, et al
Endoplasmic reticulum chaperones stabilize ligand-receptive MR1 molecules for efficient presentation of metabolite antigens.
Proc Natl Acad Sci U S A. 2020;117:24974-24985.
PubMed Abstract available

TUCHOLSKI T, Cai W, Gregorich ZR, Bayne EF, et al
Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics.
Proc Natl Acad Sci U S A. 2020;117:24691-24700.
PubMed Abstract available

September 2020

ARISTIZABAL MJ, Anreiter I, Halldorsdottir T, Odgers CL, et al
Biological embedding of experience: A primer on epigenetics.
Proc Natl Acad Sci U S A. 2020;117:23261-23269.
PubMed Abstract available

MCEWEN LM, O'Donnell KJ, McGill MG, Edgar RD, et al
The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells.
Proc Natl Acad Sci U S A. 2020;117:23329-23335.
PubMed Abstract available

VAN DEN BROECK F, Savill NJ, Imamura H, Sanders M, et al
Ecological divergence and hybridization of Neotropical Leishmania parasites.
Proc Natl Acad Sci U S A. 2020 Sep 21. pii: 1920136117.
PubMed Abstract available

HECKMANN D, Campeau A, Lloyd CJ, Phaneuf PV, et al
Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.
Proc Natl Acad Sci U S A. 2020;117:23182-23190.
PubMed Abstract available

ALLEN RS, Gregg CM, Okada S, Menon A, et al
Plant expression of NifD protein variants resistant to mitochondrial degradation.
Proc Natl Acad Sci U S A. 2020;117:23165-23173.
PubMed Abstract available

BJORKEROTH J, Campbell K, Malina C, Yu R, et al
Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media.
Proc Natl Acad Sci U S A. 2020;117:21804-21812.
PubMed Abstract available

WAINBERG M, Magis AT, Earls JC, Lovejoy JC, et al
Multiomic blood correlates of genetic risk identify presymptomatic disease alterations.
Proc Natl Acad Sci U S A. 2020;117:21813-21820.
PubMed Abstract available

CAI W, Huang J, Zhu Q, Li BE, et al
Enhancer dependence of cell-type-specific gene expression increases with developmental age.
Proc Natl Acad Sci U S A. 2020;117:21450-21458.
PubMed Abstract available

August 2020

BUFFALO V, Coop G
Estimating the genome-wide contribution of selection to temporal allele frequency change.
Proc Natl Acad Sci U S A. 2020;117:20672-20680.
PubMed Abstract available

KWESI-MALIEPAARD EM, Aslam MA, Alemdehy MF, van den Brand T, et al
The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8(+) T cells.
Proc Natl Acad Sci U S A. 2020;117:20706-20716.
PubMed Abstract available

WILLIAMS LM, McCann FE, Cabrita MA, Layton T, et al
Identifying collagen VI as a target of fibrotic diseases regulated by CREBBP/EP300.
Proc Natl Acad Sci U S A. 2020;117:20753-20763.
PubMed Abstract available

WEBER JA, Park SG, Luria V, Jeon S, et al
The whale shark genome reveals how genomic and physiological properties scale with body size.
Proc Natl Acad Sci U S A. 2020;117:20662-20671.
PubMed Abstract available

CARBALLAR-LEJARAZU R, Ogaugwu C, Tushar T, Kelsey A, et al
Next-generation gene drive for population modification of the malaria vector mosquito, Anopheles gambiae.
Proc Natl Acad Sci U S A. 2020 Aug 24. pii: 2010214117.
PubMed Abstract available

LA CONO V, Messina E, Rohde M, Arcadi E, et al
Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides.
Proc Natl Acad Sci U S A. 2020;117:20223-20234.
PubMed Abstract available

AMSTER G, Murphy DA, Milligan WR, Sella G, et al
Changes in life history and population size can explain the relative neutral diversity levels on X and autosomes in extant human populations.
Proc Natl Acad Sci U S A. 2020;117:20063-20069.
PubMed Abstract available

ABU RAYYAN A, Kamal L, Casadei S, Brownstein Z, et al
Genomic analysis of inherited hearing loss in the Palestinian population.
Proc Natl Acad Sci U S A. 2020;117:20070-20076.
PubMed Abstract available

PARK A, Oh S, Jung KL, Choi UY, et al
Global epigenomic analysis of KSHV-infected primary effusion lymphoma identifies functional MYC superenhancers and enhancer RNAs.
Proc Natl Acad Sci U S A. 2020 Aug 18. pii: 1922216117.
PubMed Abstract available

ULHUQ FR, Gomes MC, Duggan GM, Guo M, et al
A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition.
Proc Natl Acad Sci U S A. 2020 Aug 7. pii: 2006110117.
PubMed Abstract available

June 2020

SU QP, Zhao ZW, Meng L, Ding M, et al
Superresolution imaging reveals spatiotemporal propagation of human replication foci mediated by CTCF-organized chromatin structures.
Proc Natl Acad Sci U S A. 2020;117:15036-15046.
PubMed Abstract available

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