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Articles published in Proc Natl Acad Sci U S A

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    August 2020
    Honey bee colony aggression and indirect genetic effects.
    Proc Natl Acad Sci U S A. 2020;117:18148-18150.

    July 2020
  2. PARASKEVOPOULOU S, Pirzer F, Goldmann N, Schmid J, et al
    Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus.
    Proc Natl Acad Sci U S A. 2020;117:17977-17983.
    PubMed     Abstract available

  3. SANDOVAL-CASTILLO J, Gates K, Brauer CJ, Smith S, et al
    Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions.
    Proc Natl Acad Sci U S A. 2020;117:17112-17121.
    PubMed     Abstract available

  4. PEREDO EL, Cardon ZG
    Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae.
    Proc Natl Acad Sci U S A. 2020;117:17438-17445.
    PubMed     Abstract available

  5. HAWCO NJ, McIlvin MM, Bundy RM, Tagliabue A, et al
    Minimal cobalt metabolism in the marine cyanobacterium Prochlorococcus.
    Proc Natl Acad Sci U S A. 2020;117:15740-15747.
    PubMed     Abstract available

  6. HE C, Song W, Weston TA, Tran C, et al
    Peroxidasin-mediated bromine enrichment of basement membranes.
    Proc Natl Acad Sci U S A. 2020;117:15827-15836.
    PubMed     Abstract available

  7. LAY AC, Barrington AF, Hurcombe JA, Ramnath RD, et al
    A role for NPY-NPY2R signaling in albuminuric kidney disease.
    Proc Natl Acad Sci U S A. 2020;117:15862-15873.
    PubMed     Abstract available

    June 2020
    QnAs with Zachary B. Lippman.
    Proc Natl Acad Sci U S A. 2020;117:14624-14625.

  9. VENO MT, Reschke CR, Morris G, Connolly NMC, et al
    A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy.
    Proc Natl Acad Sci U S A. 2020 Jun 24. pii: 1919313117.
    PubMed     Abstract available

  10. ZHANG J, Peters RJ
    Why are momilactones always associated with biosynthetic gene clusters in plants?
    Proc Natl Acad Sci U S A. 2020;117:13867-13869.

    Profile of Christopher A. Walsh.
    Proc Natl Acad Sci U S A. 2020;117:13861-13863.

  12. BOULARD M, Rucli S, Edwards JR, Bestor TH, et al
    Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters.
    Proc Natl Acad Sci U S A. 2020;117:14292-14298.
    PubMed     Abstract available

  13. WU X, Cao B, Aquino P, Chiu TP, et al
    Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria.
    Proc Natl Acad Sci U S A. 2020;117:14322-14330.
    PubMed     Abstract available

  14. HEALTON SE, Pinto HD, Mishra LN, Hamilton GA, et al
    H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction.
    Proc Natl Acad Sci U S A. 2020;117:14251-14258.
    PubMed     Abstract available

  15. KRESS WJ, Mazet JAK, Hebert PDN
    Opinion: Intercepting pandemics through genomics.
    Proc Natl Acad Sci U S A. 2020;117:13852-13855.

  16. RAUSELL A, Luo Y, Lopez M, Seeleuthner Y, et al
    Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes.
    Proc Natl Acad Sci U S A. 2020;117:13626-13636.
    PubMed     Abstract available

  17. ROACH TNF, Little M, Arts MGI, Huckeba J, et al
    A multiomic analysis of in situ coral-turf algal interactions.
    Proc Natl Acad Sci U S A. 2020;117:13588-13595.
    PubMed     Abstract available

  18. MAHAMKALI V, Valgepea K, de Souza Pinto Lemgruber R, Plan M, et al
    Redox controls metabolic robustness in the gas-fermenting acetogen Clostridium autoethanogenum.
    Proc Natl Acad Sci U S A. 2020;117:13168-13175.
    PubMed     Abstract available

  19. DEGRANDMAISON J, Abdallah K, Blais V, Genier S, et al
    In vivo mapping of a GPCR interactome using knockin mice.
    Proc Natl Acad Sci U S A. 2020;117:13105-13116.
    PubMed     Abstract available

    May 2020
  20. BLATT M, Gusev A, Polyakov Y, Goldwasser S, et al
    Secure large-scale genome-wide association studies using homomorphic encryption.
    Proc Natl Acad Sci U S A. 2020;117:11608-11613.
    PubMed     Abstract available

  21. HUANG J, Khademi M, Fugger L, Lindhe O, et al
    Inflammation-related plasma and CSF biomarkers for multiple sclerosis.
    Proc Natl Acad Sci U S A. 2020 May 26. pii: 1912839117.
    PubMed     Abstract available

  22. PINEDA SS, Chin YK, Undheim EAB, Senff S, et al
    Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.
    Proc Natl Acad Sci U S A. 2020;117:11399-11408.
    PubMed     Abstract available

  23. RATHMANN H, Reyes-Centeno H
    Testing the utility of dental morphological trait combinations for inferring human neutral genetic variation.
    Proc Natl Acad Sci U S A. 2020;117:10769-10777.
    PubMed     Abstract available

  24. MOURKAS E, Taylor AJ, Meric G, Bayliss SC, et al
    Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni.
    Proc Natl Acad Sci U S A. 2020;117:11018-11028.
    PubMed     Abstract available

  25. DE MANUEL M, Barnett R, Sandoval-Velasco M, Yamaguchi N, et al
    The evolutionary history of extinct and living lions.
    Proc Natl Acad Sci U S A. 2020;117:10927-10934.
    PubMed     Abstract available

  26. CHAKRABORTY A, Ruff SE, Dong X, Ellefson ED, et al
    Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres.
    Proc Natl Acad Sci U S A. 2020;117:11029-11037.
    PubMed     Abstract available

  27. LONG JZ
    Proteomics illuminates fat as key tissue in aging.
    Proc Natl Acad Sci U S A. 2020;117:10111-10112.

  28. PETIT CS, Lee JJ, Boland S, Swarup S, et al
    Inhibition of sphingolipid synthesis improves outcomes and survival in GARP mutant wobbler mice, a model of motor neuron degeneration.
    Proc Natl Acad Sci U S A. 2020;117:10565-10574.
    PubMed     Abstract available

  29. LYNCH M
    The evolutionary scaling of cellular traits imposed by the drift barrier.
    Proc Natl Acad Sci U S A. 2020;117:10435-10444.
    PubMed     Abstract available

  30. DEBOUTTE W, Beller L, Yinda CK, Maes P, et al
    Honey-bee-associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential.
    Proc Natl Acad Sci U S A. 2020;117:10511-10519.
    PubMed     Abstract available

  31. DONIHUE CM, Kowaleski AM, Losos JB, Algar AC, et al
    Hurricane effects on Neotropical lizards span geographic and phylogenetic scales.
    Proc Natl Acad Sci U S A. 2020;117:10429-10434.
    PubMed     Abstract available

    Inner Workings: Molecular biologists offer "wartime service" in the effort to test for COVID-19.
    Proc Natl Acad Sci U S A. 2020;117:9656-9659.

  33. CRANE PR, Friis EM
    Water lilies, loss of woodiness, and model systems.
    Proc Natl Acad Sci U S A. 2020;117:9674-9676.

  34. YU Q, Xiao H, Jedrychowski MP, Schweppe DK, et al
    Sample multiplexing for targeted pathway proteomics in aging mice.
    Proc Natl Acad Sci U S A. 2020;117:9723-9732.
    PubMed     Abstract available

  35. PARDO J, Man Wai C, Chay H, Madden CF, et al
    Intertwined signatures of desiccation and drought tolerance in grasses.
    Proc Natl Acad Sci U S A. 2020;117:10079-10088.
    PubMed     Abstract available

  36. CAMMACK AJ, Moudgil A, Chen J, Vasek MJ, et al
    A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues.
    Proc Natl Acad Sci U S A. 2020;117:10003-10014.
    PubMed     Abstract available

    April 2020
  37. FLYNN JM, Hubley R, Goubert C, Rosen J, et al
    RepeatModeler2 for automated genomic discovery of transposable element families.
    Proc Natl Acad Sci U S A. 2020;117:9451-9457.
    PubMed     Abstract available

  38. LEE S, Hu Y, Loo SK, Tan Y, et al
    Landscape analysis of adjacent gene rearrangements reveals BCL2L14-ETV6 gene fusions in more aggressive triple-negative breast cancer.
    Proc Natl Acad Sci U S A. 2020 Apr 22. pii: 1921333117.
    PubMed     Abstract available

  39. CHERRY TJ, Yang MG, Harmin DA, Tao P, et al
    Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease.
    Proc Natl Acad Sci U S A. 2020;117:9001-9012.
    PubMed     Abstract available

  40. OBERHOFER G, Ivy T, Hay BA
    Gene drive and resilience through renewal with next generation Cleave and Rescue selfish genetic elements.
    Proc Natl Acad Sci U S A. 2020;117:9013-9021.
    PubMed     Abstract available

  41. CAMPBELL K, Westholm J, Kasvandik S, Di Bartolomeo F, et al
    Building blocks are synthesized on demand during the yeast cell cycle.
    Proc Natl Acad Sci U S A. 2020;117:7575-7583.
    PubMed     Abstract available

  42. LEUNG KK, Wilson GM, Kirkemo LL, Riley NM, et al
    Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes.
    Proc Natl Acad Sci U S A. 2020;117:7764-7775.
    PubMed     Abstract available

  43. DAVIS TH
    QnAs with Jens Nielsen.
    Proc Natl Acad Sci U S A. 2020;117:7548-7549.

  44. YE M, Goudot C, Hoyler T, Lemoine B, et al
    Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers.
    Proc Natl Acad Sci U S A. 2020;117:7905-7916.
    PubMed     Abstract available

  45. YADAV V, Sun S, Coelho MA, Heitman J, et al
    Centromere scission drives chromosome shuffling and reproductive isolation.
    Proc Natl Acad Sci U S A. 2020;117:7917-7928.
    PubMed     Abstract available

    March 2020
  46. OYAS O, Borrell S, Trauner A, Zimmermann M, et al
    Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis.
    Proc Natl Acad Sci U S A. 2020 Mar 30. pii: 1915551117.
    PubMed     Abstract available

  47. ALLEN JP, Ozer EA, Minasov G, Shuvalova L, et al
    A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant.
    Proc Natl Acad Sci U S A. 2020;117:6811-6821.
    PubMed     Abstract available

  48. SLODKOWICZ G, Goldman N
    Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals.
    Proc Natl Acad Sci U S A. 2020;117:5977-5986.
    PubMed     Abstract available

  49. SEIF Y, Choudhary KS, Hefner Y, Anand A, et al
    Metabolic and genetic basis for auxotrophies in Gram-negative species.
    Proc Natl Acad Sci U S A. 2020;117:6264-6273.
    PubMed     Abstract available

  50. LIN Y, Wozniak JM, Grimsey NJ, Girada S, et al
    Phosphoproteomic analysis of protease-activated receptor-1 biased signaling reveals unique modulators of endothelial barrier function.
    Proc Natl Acad Sci U S A. 2020;117:5039-5048.
    PubMed     Abstract available

  51. HARRISON S, Spasojevic MJ, Li D
    Climate and plant community diversity in space and time.
    Proc Natl Acad Sci U S A. 2020;117:4464-4470.
    PubMed     Abstract available

  52. ZHANG Y, Wendte JM, Ji L, Schmitz RJ, et al
    Natural variation in DNA methylation homeostasis and the emergence of epialleles.
    Proc Natl Acad Sci U S A. 2020;117:4874-4884.
    PubMed     Abstract available

  53. ZHANG X, Hong D, Ma S, Ward T, et al
    Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage.
    Proc Natl Acad Sci U S A. 2020;117:4864-4873.
    PubMed     Abstract available

  54. KESAVAN R, Fromel T, Zukunft S, Laban H, et al
    Cyp2c44 regulates prostaglandin synthesis, lymphangiogenesis, and metastasis in a mouse model of breast cancer.
    Proc Natl Acad Sci U S A. 2020 Mar 2. pii: 1921381117.
    PubMed     Abstract available

  55. YANG Q, Zhao X, Lemey P, Suchard MA, et al
    Assessing the role of live poultry trade in community-structured transmission of avian influenza in China.
    Proc Natl Acad Sci U S A. 2020 Mar 2. pii: 1906954117.
    PubMed     Abstract available

    February 2020
  56. BELLIS ES, Kelly EA, Lorts CM, Gao H, et al
    Genomics of sorghum local adaptation to a parasitic plant.
    Proc Natl Acad Sci U S A. 2020;117:4243-4251.
    PubMed     Abstract available

  57. FEDOROV VB, Trucchi E, Goropashnaya AV, Waltari E, et al
    Impact of past climate warming on genomic diversity and demographic history of collared lemmings across the Eurasian Arctic.
    Proc Natl Acad Sci U S A. 2020;117:3026-3033.
    PubMed     Abstract available

  58. GRAHAM G, Csicsery N, Stasiowski E, Thouvenin G, et al
    Genome-scale transcriptional dynamics and environmental biosensing.
    Proc Natl Acad Sci U S A. 2020;117:3301-3306.
    PubMed     Abstract available

    Inner Workings: A microscopic mystery at the heart of mass-coral bleaching.
    Proc Natl Acad Sci U S A. 2020;117:2232-2235.

  60. CASTRO E SILVA MA, Nunes K, Lemes RB, Mas-Sandoval A, et al
    Genomic insight into the origins and dispersal of the Brazilian coastal natives.
    Proc Natl Acad Sci U S A. 2020;117:2372-2377.
    PubMed     Abstract available

  61. KESSLER MD, Loesch DP, Perry JA, Heard-Costa NL, et al
    De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population.
    Proc Natl Acad Sci U S A. 2020;117:2560-2569.
    PubMed     Abstract available

    January 2020
  62. SURAN M
    Finding the tail end: The discovery of RNA splicing.
    Proc Natl Acad Sci U S A. 2020;117:1829-1832.

  63. MILLER AC, Comellas AP, Hornick DB, Stoltz DA, et al
    Cystic fibrosis carriers are at increased risk for a wide range of cystic fibrosis-related conditions.
    Proc Natl Acad Sci U S A. 2020;117:1621-1627.
    PubMed     Abstract available

  64. ROWAN J, Beaudrot L, Franklin J, Reed KE, et al
    Geographically divergent evolutionary and ecological legacies shape mammal biodiversity in the global tropics and subtropics.
    Proc Natl Acad Sci U S A. 2020;117:1559-1565.
    PubMed     Abstract available

    Functional testing of ASD-associated genes.
    Proc Natl Acad Sci U S A. 2020;117:26-28.

  66. NIETZEL T, Mostertz J, Ruberti C, Nee G, et al
    Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination.
    Proc Natl Acad Sci U S A. 2020;117:741-751.
    PubMed     Abstract available

  67. MCDIARMID TA, Belmadani M, Liang J, Meili F, et al
    Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.
    Proc Natl Acad Sci U S A. 2020;117:656-667.
    PubMed     Abstract available

  68. MERWIN NJ, Mousa WK, Dejong CA, Skinnider MA, et al
    DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products.
    Proc Natl Acad Sci U S A. 2020;117:371-380.
    PubMed     Abstract available

    December 2019
  69. ADOLFI A, Poulton B, Anthousi A, Macilwee S, et al
    Functional genetic validation of key genes conferring insecticide resistance in the major African malaria vector, Anopheles gambiae.
    Proc Natl Acad Sci U S A. 2019 Dec 4. pii: 1914633116.
    PubMed     Abstract available

  70. YILDIRIM F, Ng CW, Kappes V, Ehrenberger T, et al
    Early epigenomic and transcriptional changes reveal Elk-1 transcription factor as a therapeutic target in Huntington's disease.
    Proc Natl Acad Sci U S A. 2019;116:24840-24851.
    PubMed     Abstract available

    November 2019
  71. QIAN H, Deng T, Jin Y, Mao L, et al
    Phylogenetic dispersion and diversity in regional assemblages of seed plants in China.
    Proc Natl Acad Sci U S A. 2019;116:23192-23201.
    PubMed     Abstract available

    October 2019
  72. BROWN TS, Challagundla L, Baugh EH, Omar SV, et al
    Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa.
    Proc Natl Acad Sci U S A. 2019 Oct 28. pii: 1906636116.
    PubMed     Abstract available

  73. COX SL, Ruff CB, Maier RM, Mathieson I, et al
    Genetic contributions to variation in human stature in prehistoric Europe.
    Proc Natl Acad Sci U S A. 2019;116:21484-21492.
    PubMed     Abstract available

  74. LI G, Eckert MA, Chang JW, Montgomery JE, et al
    Ultrasensitive, multiplexed chemoproteomic profiling with soluble activity-dependent proximity ligation.
    Proc Natl Acad Sci U S A. 2019;116:21493-21500.
    PubMed     Abstract available

  75. MARCOVITZ A, Turakhia Y, Chen HI, Gloudemans M, et al
    A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales.
    Proc Natl Acad Sci U S A. 2019;116:21094-21103.
    PubMed     Abstract available

    The beginning of an era of functional genomics in Rickettsiology is steeped in history.
    Proc Natl Acad Sci U S A. 2019;116:20252-20253.

  77. NEEDHAM DM, Yoshizawa S, Hosaka T, Poirier C, et al
    A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.
    Proc Natl Acad Sci U S A. 2019;116:20574-20583.
    PubMed     Abstract available

  78. RUDMAN SM, Greenblum S, Hughes RC, Rajpurohit S, et al
    Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2019;116:20025-20032.
    PubMed     Abstract available

  79. RYAN SF, Lombaert E, Espeset A, Vila R, et al
    Global invasion history of the agricultural pest butterfly Pieris rapae revealed with genomics and citizen science.
    Proc Natl Acad Sci U S A. 2019;116:20015-20024.
    PubMed     Abstract available

    September 2019
  80. GEBER J, Tromp M, Scott A, Bouwman A, et al
    Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine.
    Proc Natl Acad Sci U S A. 2019;116:19380-19385.
    PubMed     Abstract available

  81. LIU K, Theusch E, Zhou Y, Ashuach T, et al
    GeneFishing to reconstruct context specific portraits of biological processes.
    Proc Natl Acad Sci U S A. 2019;116:18943-18950.
    PubMed     Abstract available

  82. KUMAR S, Clarke D, Gerstein MB
    Leveraging protein dynamics to identify cancer mutational hotspots using 3D structures.
    Proc Natl Acad Sci U S A. 2019;116:18962-18970.
    PubMed     Abstract available

  83. TOEWS DPL, Taylor SA, Streby HM, Kramer GR, et al
    Selection on VPS13A linked to migration in a songbird.
    Proc Natl Acad Sci U S A. 2019;116:18272-18274.
    PubMed     Abstract available

  84. TIAN C, Clauser KR, Ohlund D, Rickelt S, et al
    Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells.
    Proc Natl Acad Sci U S A. 2019 Sep 4. pii: 1908626116.
    PubMed     Abstract available

  85. HOPKINS BR, Sepil I, Thezenas ML, Craig JF, et al
    Divergent allocation of sperm and the seminal proteome along a competition gradient in Drosophila melanogaster.
    Proc Natl Acad Sci U S A. 2019;116:17925-17933.
    PubMed     Abstract available

  86. FRAZAO N, Sousa A, Lassig M, Gordo I, et al
    Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut.
    Proc Natl Acad Sci U S A. 2019;116:17906-17915.
    PubMed     Abstract available

    August 2019
  87. SHEN Y, Grisdale CJ, Islam SA, Bose P, et al
    Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments.
    Proc Natl Acad Sci U S A. 2019 Aug 30. pii: 1813495116.
    PubMed     Abstract available

  88. KREMER D, Perron H, Kury P
    Reply to Ruprecht and Mayer: Unearthing genomic fossils in the pathogenesis of multiple sclerosis.
    Proc Natl Acad Sci U S A. 2019 Aug 27. pii: 1912315116.

  89. PERSI E, Prandi D, Wolf YI, Pozniak Y, et al
    Proteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues.
    Proc Natl Acad Sci U S A. 2019;116:16987-16996.
    PubMed     Abstract available

  90. STEINRUCKEN M, Kamm J, Spence JP, Song YS, et al
    Inference of complex population histories using whole-genome sequences from multiple populations.
    Proc Natl Acad Sci U S A. 2019;116:17115-17120.
    PubMed     Abstract available

  91. SOTOUDEH R, Harris KM, Conley D
    Effects of the peer metagenomic environment on smoking behavior.
    Proc Natl Acad Sci U S A. 2019;116:16302-16307.
    PubMed     Abstract available

    Genomics reveals alga-associated cyanobacteria hiding in plain sight.
    Proc Natl Acad Sci U S A. 2019;116:15757-15759.

  93. AZAR B
    QnAs with David Reich.
    Proc Natl Acad Sci U S A. 2019;116:15752-15753.

  94. NAKAYAMA T, Nomura M, Takano Y, Tanifuji G, et al
    Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host.
    Proc Natl Acad Sci U S A. 2019;116:15973-15978.
    PubMed     Abstract available

    July 2019
  95. OUYANG W, Han J
    Universal amplification-free molecular diagnostics by billion-fold hierarchical nanofluidic concentration.
    Proc Natl Acad Sci U S A. 2019 Jul 29. pii: 1904513116.
    PubMed     Abstract available

  96. GREENLON A, Chang PL, Damtew ZM, Muleta A, et al
    Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.
    Proc Natl Acad Sci U S A. 2019;116:15200-15209.
    PubMed     Abstract available

  97. DARNET S, Dragalzew AC, Amaral DB, Sousa JF, et al
    Deep evolutionary origin of limb and fin regeneration.
    Proc Natl Acad Sci U S A. 2019;116:15106-15115.
    PubMed     Abstract available

  98. HAMM JN, Erdmann S, Eloe-Fadrosh EA, Angeloni A, et al
    Unexpected host dependency of Antarctic Nanohaloarchaeota.
    Proc Natl Acad Sci U S A. 2019;116:14661-14670.
    PubMed     Abstract available

    Core Concept: Gene transfers from bacteria and viruses may be shaping complex organisms.
    Proc Natl Acad Sci U S A. 2019;116:13714-13716.

  100. LOBKOVSKY AE, Levi L, Wolf YI, Maiers M, et al
    Multiplicative fitness, rapid haplotype discovery, and fitness decay explain evolution of human MHC.
    Proc Natl Acad Sci U S A. 2019;116:14098-14104.
    PubMed     Abstract available

  101. RINKER DC, Specian NK, Zhao S, Gibbons JG, et al
    Polar bear evolution is marked by rapid changes in gene copy number in response to dietary shift.
    Proc Natl Acad Sci U S A. 2019;116:13446-13451.
    PubMed     Abstract available

    June 2019
  102. CACERES PS, Gravotta D, Zager PJ, Dephoure N, et al
    Quantitative proteomics of MDCK cells identify unrecognized roles of clathrin adaptor AP-1 in polarized distribution of surface proteins.
    Proc Natl Acad Sci U S A. 2019;116:11796-11805.
    PubMed     Abstract available

  103. LEWIS VM, Saunders LM, Larson TA, Bain EJ, et al
    Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores.
    Proc Natl Acad Sci U S A. 2019;116:11806-11811.
    PubMed     Abstract available

  104. XU L, Stige LC, Leirs H, Neerinckx S, et al
    Historical and genomic data reveal the influencing factors on global transmission velocity of plague during the Third Pandemic.
    Proc Natl Acad Sci U S A. 2019;116:11833-11838.
    PubMed     Abstract available

  105. KANG L, Rashkovetsky E, Michalak K, Garner HR, et al
    Genomic divergence and adaptive convergence in Drosophila simulans from Evolution Canyon, Israel.
    Proc Natl Acad Sci U S A. 2019;116:11839-11844.
    PubMed     Abstract available

  106. TORGASHEVA AA, Malinovskaya LP, Zadesenets KS, Karamysheva TV, et al
    Germline-restricted chromosome (GRC) is widespread among songbirds.
    Proc Natl Acad Sci U S A. 2019;116:11845-11850.
    PubMed     Abstract available

  107. TAKASHI Y, Kosako H, Sawatsubashi S, Kinoshita Y, et al
    Activation of unliganded FGF receptor by extracellular phosphate potentiates proteolytic protection of FGF23 by its O-glycosylation.
    Proc Natl Acad Sci U S A. 2019;116:11418-11427.
    PubMed     Abstract available

    May 2019
  108. MA X, Huang J
    Predicting clinical outcome of therapy-resistant prostate cancer.
    Proc Natl Acad Sci U S A. 2019 May 21. pii: 1906812116.

  109. BRIGHAM BS, Kitzrow JP, Reyes JC, Musier-Forsyth K, et al
    Intrinsic conformational dynamics of the HIV-1 genomic RNA 5'UTR.
    Proc Natl Acad Sci U S A. 2019 May 8. pii: 1902271116.
    PubMed     Abstract available

  110. REYNOLDS AW, Mata-Miguez J, Miro-Herrans A, Briggs-Cloud M, et al
    Comparing signals of natural selection between three Indigenous North American populations.
    Proc Natl Acad Sci U S A. 2019;116:9312-9317.
    PubMed     Abstract available

  111. ABIDA W, Cyrta J, Heller G, Prandi D, et al
    Genomic correlates of clinical outcome in advanced prostate cancer.
    Proc Natl Acad Sci U S A. 2019 May 6. pii: 1902651116.
    PubMed     Abstract available

    April 2019
  112. DOLGIN E
    Inner Workings: Genomics blazes a trail to improved cannabis cultivation.
    Proc Natl Acad Sci U S A. 2019;116:8638-8640.

  113. MIRANDA A, Hamilton PT, Zhang AW, Pattnaik S, et al
    Cancer stemness, intratumoral heterogeneity, and immune response across cancers.
    Proc Natl Acad Sci U S A. 2019;116:9020-9029.
    PubMed     Abstract available

  114. AMINI S, Tadayon M, Loke JJ, Kumar A, et al
    A diecast mineralization process forms the tough mantis shrimp dactyl club.
    Proc Natl Acad Sci U S A. 2019;116:8685-8692.
    PubMed     Abstract available

  115. PALACIOS-FLORES K, Castillo A, Uribe C, Garcia Sotelo J, et al
    Prediction and identification of recurrent genomic rearrangements that generate chimeric chromosomes in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 2019;116:8445-8450.
    PubMed     Abstract available

  116. BEMMELS JB, Knowles LL, Dick CW
    Genomic evidence of survival near ice sheet margins for some, but not all, North American trees.
    Proc Natl Acad Sci U S A. 2019;116:8431-8436.
    PubMed     Abstract available

  117. KOTELNIKOVA E, Kiani NA, Messinis D, Pertsovskaya I, et al
    MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis.
    Proc Natl Acad Sci U S A. 2019 Apr 19. pii: 1818347116.
    PubMed     Abstract available

  118. VENETZ JE, Del Medico L, Wolfle A, Schachle P, et al
    Chemical synthesis rewriting of a bacterial genome to achieve design flexibility and biological functionality.
    Proc Natl Acad Sci U S A. 2019;116:8070-8079.
    PubMed     Abstract available

  119. WEE S, Alli-Shaik A, Kek R, Swa HLF, et al
    Multiplex targeted mass spectrometry assay for one-shot flavivirus diagnosis.
    Proc Natl Acad Sci U S A. 2019;116:6754-6759.
    PubMed     Abstract available

    March 2019
  120. AZAR B
    Profile of Daniel A. Haber.
    Proc Natl Acad Sci U S A. 2019;116:5840-5842.

  121. LI W, Cong Q, Shen J, Zhang J, et al
    Genomes of skipper butterflies reveal extensive convergence of wing patterns.
    Proc Natl Acad Sci U S A. 2019;116:6232-6237.
    PubMed     Abstract available

  122. MASHAYEKHI S, Beerli P
    Fractional coalescent.
    Proc Natl Acad Sci U S A. 2019;116:6244-6249.
    PubMed     Abstract available

  123. CROW M, Lim N, Ballouz S, Pavlidis P, et al
    Predictability of human differential gene expression.
    Proc Natl Acad Sci U S A. 2019;116:6491-6500.
    PubMed     Abstract available

  124. OBERHOFER G, Ivy T, Hay BA
    Cleave and Rescue, a novel selfish genetic element and general strategy for gene drive.
    Proc Natl Acad Sci U S A. 2019;116:6250-6259.
    PubMed     Abstract available

  125. HELBERT W, Poulet L, Drouillard S, Mathieu S, et al
    Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space.
    Proc Natl Acad Sci U S A. 2019;116:6063-6068.
    PubMed     Abstract available

  126. GAO P, Uzun Y, He B, Salamati SE, et al
    Risk variants disrupting enhancers of TH1 and TREG cells in type 1 diabetes.
    Proc Natl Acad Sci U S A. 2019 Mar 25. pii: 1815336116.
    PubMed     Abstract available

  127. NICAISE AM, Wagstaff LJ, Willis CM, Paisie C, et al
    Cellular senescence in progenitor cells contributes to diminished remyelination potential in progressive multiple sclerosis.
    Proc Natl Acad Sci U S A. 2019 Mar 25. pii: 1818348116.
    PubMed     Abstract available

  128. KNIJNENBURG TA, Vockley JG, Chambwe N, Gibbs DL, et al
    Genomic and molecular characterization of preterm birth.
    Proc Natl Acad Sci U S A. 2019;116:5819-5827.
    PubMed     Abstract available

  129. YANG CJ, Samayoa LF, Bradbury PJ, Olukolu BA, et al
    The genetic architecture of teosinte catalyzed and constrained maize domestication.
    Proc Natl Acad Sci U S A. 2019;116:5643-5652.
    PubMed     Abstract available

  130. SHAO L, Xing F, Xu C, Zhang Q, et al
    Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis.
    Proc Natl Acad Sci U S A. 2019;116:5653-5658.
    PubMed     Abstract available

  131. ZHOU J, Li Y
    SNPs deciding the rapid growth of cyanobacteria are alterable.
    Proc Natl Acad Sci U S A. 2019;116:3945.

  132. UNGERER J, Wendt KE, Hendry JI, Maranas CD, et al
    Reply to Zhou and Li: Plasticity of the genomic haplotype of Synechococcus elongatus leads to rapid strain adaptation under laboratory conditions.
    Proc Natl Acad Sci U S A. 2019;116:3946-3947.

  133. SHERIDAN MA, Yang Y, Jain A, Lyons AS, et al
    Early onset preeclampsia in a model for human placental trophoblast.
    Proc Natl Acad Sci U S A. 2019;116:4336-4345.
    PubMed     Abstract available

  134. KUNOVA BOSAKOVA M, Nita A, Gregor T, Varecha M, et al
    Fibroblast growth factor receptor influences primary cilium length through an interaction with intestinal cell kinase.
    Proc Natl Acad Sci U S A. 2019;116:4316-4325.
    PubMed     Abstract available

    February 2019
  135. GAO W, Sun YB, Zhou WW, Xiong ZJ, et al
    Genomic and transcriptomic investigations of the evolutionary transition from oviparity to viviparity.
    Proc Natl Acad Sci U S A. 2019;116:3646-3655.
    PubMed     Abstract available

  136. RAMIREZ-FLANDES S, Gonzalez B, Ulloa O
    Redox traits characterize the organization of global microbial communities.
    Proc Natl Acad Sci U S A. 2019;116:3630-3635.
    PubMed     Abstract available

  137. NGO V, Chen Z, Zhang K, Whitaker JW, et al
    Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse.
    Proc Natl Acad Sci U S A. 2019;116:3668-3677.
    PubMed     Abstract available

  138. BUNNIK EM, Venkat A, Shao J, McGovern KE, et al
    Comparative 3D genome organization in apicomplexan parasites.
    Proc Natl Acad Sci U S A. 2019;116:3183-3192.
    PubMed     Abstract available

  139. PECK SC, Denger K, Burrichter A, Irwin SM, et al
    A glycyl radical enzyme enables hydrogen sulfide production by the human intestinal bacterium Bilophila wadsworthia.
    Proc Natl Acad Sci U S A. 2019;116:3171-3176.
    PubMed     Abstract available

  140. PHALAN BT, Northrup JM, Yang Z, Deal RL, et al
    Impacts of the Northwest Forest Plan on forest composition and bird populations.
    Proc Natl Acad Sci U S A. 2019;116:3322-3327.
    PubMed     Abstract available

  141. GEISSNER A, Reinhardt A, Rademacher C, Johannssen T, et al
    Microbe-focused glycan array screening platform.
    Proc Natl Acad Sci U S A. 2019;116:1958-1967.
    PubMed     Abstract available

  142. ZHAO T, Schranz ME
    Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes.
    Proc Natl Acad Sci U S A. 2019;116:2165-2174.
    PubMed     Abstract available

  143. WONG MM, Bhaskara GB, Wen TN, Lin WD, et al
    Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook-Like10 phosphorylation required for stress growth regulation.
    Proc Natl Acad Sci U S A. 2019;116:2354-2363.
    PubMed     Abstract available

  144. FUDENBERG G, Pollard KS
    Chromatin features constrain structural variation across evolutionary timescales.
    Proc Natl Acad Sci U S A. 2019;116:2175-2180.
    PubMed     Abstract available

  145. LAI YT, Yeung CKL, Omland KE, Pang EL, et al
    Standing genetic variation as the predominant source for adaptation of a songbird.
    Proc Natl Acad Sci U S A. 2019;116:2152-2157.
    PubMed     Abstract available

  146. STRENKERT D, Schmollinger S, Gallaher SD, Salome PA, et al
    Multiomics resolution of molecular events during a day in the life of Chlamydomonas.
    Proc Natl Acad Sci U S A. 2019;116:2374-2383.
    PubMed     Abstract available

  147. GOMEZ-VALERO L, Rusniok C, Carson D, Mondino S, et al
    More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells.
    Proc Natl Acad Sci U S A. 2019;116:2265-2273.
    PubMed     Abstract available

  148. CHEN N, Juric I, Cosgrove EJ, Bowman R, et al
    Allele frequency dynamics in a pedigreed natural population.
    Proc Natl Acad Sci U S A. 2019;116:2158-2164.
    PubMed     Abstract available

    January 2019
  149. FELDMAN M, Vershinin Z, Goliand I, Elia N, et al
    The methyltransferase SETD6 regulates Mitotic progression through PLK1 methylation.
    Proc Natl Acad Sci U S A. 2019;116:1235-1240.
    PubMed     Abstract available

  150. HORNS F, Vollmers C, Dekker CL, Quake SR, et al
    Signatures of selection in the human antibody repertoire: Selective sweeps, competing subclones, and neutral drift.
    Proc Natl Acad Sci U S A. 2019;116:1261-1266.
    PubMed     Abstract available

  151. SNYDER-MACKLER N, Sanz J, Kohn JN, Voyles T, et al
    Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques.
    Proc Natl Acad Sci U S A. 2019;116:1219-1228.
    PubMed     Abstract available

  152. VAN DORP L, Lowes S, Weigel JL, Ansari-Pour N, et al
    Genetic legacy of state centralization in the Kuba Kingdom of the Democratic Republic of the Congo.
    Proc Natl Acad Sci U S A. 2019;116:593-598.
    PubMed     Abstract available

  153. LEUNG KK, Nguyen A, Shi T, Tang L, et al
    Multiomics of azacitidine-treated AML cells reveals variable and convergent targets that remodel the cell-surface proteome.
    Proc Natl Acad Sci U S A. 2019;116:695-700.
    PubMed     Abstract available

  154. BAYRAKTAR EC, Baudrier L, Ozerdem C, Lewis CA, et al
    MITO-Tag Mice enable rapid isolation and multimodal profiling of mitochondria from specific cell types in vivo.
    Proc Natl Acad Sci U S A. 2019;116:303-312.
    PubMed     Abstract available

    December 2018
  155. OH YM, Mahar M, Ewan EE, Leahy KM, et al
    Epigenetic regulator UHRF1 inactivates REST and growth suppressor gene expression via DNA methylation to promote axon regeneration.
    Proc Natl Acad Sci U S A. 2018;115:E12417-E12426.
    PubMed     Abstract available

  156. LIN M, Siford RL, Martin AR, Nakagome S, et al
    Rapid evolution of a skin-lightening allele in southern African KhoeSan.
    Proc Natl Acad Sci U S A. 2018;115:13324-13329.
    PubMed     Abstract available

  157. DIXON G, Liao Y, Bay LK, Matz MV, et al
    Role of gene body methylation in acclimatization and adaptation in a basal metazoan.
    Proc Natl Acad Sci U S A. 2018;115:13342-13346.
    PubMed     Abstract available

  158. TOKUDA G, Mikaelyan A, Fukui C, Matsuura Y, et al
    Fiber-associated spirochetes are major agents of hemicellulose degradation in the hindgut of wood-feeding higher termites.
    Proc Natl Acad Sci U S A. 2018;115:E11996-E12004.
    PubMed     Abstract available

  159. CARPENTER BL, Zhou W, Madaj Z, DeWitt AK, et al
    Mother-child transmission of epigenetic information by tunable polymorphic imprinting.
    Proc Natl Acad Sci U S A. 2018;115:E11970-E11977.
    PubMed     Abstract available

  160. KAMELGARN M, Chen J, Kuang L, Jin H, et al
    ALS mutations of FUS suppress protein translation and disrupt the regulation of nonsense-mediated decay.
    Proc Natl Acad Sci U S A. 2018;115:E11904-E11913.
    PubMed     Abstract available

  161. CROMBIE AT, Larke-Mejia NL, Emery H, Dawson R, et al
    Poplar phyllosphere harbors disparate isoprene-degrading bacteria.
    Proc Natl Acad Sci U S A. 2018;115:13081-13086.
    PubMed     Abstract available

  162. SONG H, Ou W, Feng Y, Zhang J, et al
    Disparate impact on CD4 T cell count by two distinct HIV-1 phylogenetic clusters from the same clade.
    Proc Natl Acad Sci U S A. 2018 Dec 17. pii: 1814714116.
    PubMed     Abstract available

  163. HAMDAN FH, Johnsen SA
    DeltaNp63-dependent super enhancers define molecular identity in pancreatic cancer by an interconnected transcription factor network.
    Proc Natl Acad Sci U S A. 2018 Dec 12. pii: 1812915116.
    PubMed     Abstract available

  164. MILLER NT, Burnap RL
    Navigating the fitness landscape using multiallele genome editing.
    Proc Natl Acad Sci U S A. 2018;115:12547-12549.

  165. UNGERER J, Wendt KE, Hendry JI, Maranas CD, et al
    Comparative genomics reveals the molecular determinants of rapid growth of the cyanobacterium Synechococcus elongatus UTEX 2973.
    Proc Natl Acad Sci U S A. 2018;115:E11761-E11770.
    PubMed     Abstract available

    November 2018
  166. MATSUNUMA R, Chan DW, Kim BJ, Singh P, et al
    DPYSL3 modulates mitosis, migration, and epithelial-to-mesenchymal transition in claudin-low breast cancer.
    Proc Natl Acad Sci U S A. 2018 Nov 29. pii: 1810598115.
    PubMed     Abstract available

  167. BERGEY CM, Lopez M, Harrison GF, Patin E, et al
    Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers.
    Proc Natl Acad Sci U S A. 2018;115:E11256-E11263.
    PubMed     Abstract available

  168. LOELL K, Nanda V
    Marginal protein stability drives subcellular proteome isoelectric point.
    Proc Natl Acad Sci U S A. 2018;115:11778-11783.
    PubMed     Abstract available

  169. KERSTEN RD, Weng JK
    Gene-guided discovery and engineering of branched cyclic peptides in plants.
    Proc Natl Acad Sci U S A. 2018;115:E10961-E10969.
    PubMed     Abstract available

  170. LIN YC, Wang J, Delhomme N, Schiffthaler B, et al
    Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen.
    Proc Natl Acad Sci U S A. 2018;115:E10970-E10978.
    PubMed     Abstract available

  171. BAUSCH-FLUCK D, Goldmann U, Muller S, van Oostrum M, et al
    The in silico human surfaceome.
    Proc Natl Acad Sci U S A. 2018;115:E10988-E10997.
    PubMed     Abstract available

    October 2018
  172. COSTA DL, Yetter N, DeSomer H
    Intergenerational transmission of paternal trauma among US Civil War ex-POWs.
    Proc Natl Acad Sci U S A. 2018;115:11215-11220.
    PubMed     Abstract available

  173. MARIE R, Pedersen JN, Baerlocher L, Koprowska K, et al
    Single-molecule DNA-mapping and whole-genome sequencing of individual cells.
    Proc Natl Acad Sci U S A. 2018;115:11192-11197.
    PubMed     Abstract available

  174. PAERL RW, Sundh J, Tan D, Svenningsen SL, et al
    Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability.
    Proc Natl Acad Sci U S A. 2018;115:E10447-E10456.
    PubMed     Abstract available

  175. KOKOTOS AC, Peltier J, Davenport EC, Trost M, et al
    Activity-dependent bulk endocytosis proteome reveals a key presynaptic role for the monomeric GTPase Rab11.
    Proc Natl Acad Sci U S A. 2018;115:E10177-E10186.
    PubMed     Abstract available

  176. RIVAS-CARRILLO SD, Pettersson ME, Rubin CJ, Jern P, et al
    Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations.
    Proc Natl Acad Sci U S A. 2018;115:11012-11017.
    PubMed     Abstract available

  177. WANG K, Yang Z, Qing D, Ren F, et al
    Quantitative and functional posttranslational modification proteomics reveals that TREPH1 plays a role in plant touch-delayed bolting.
    Proc Natl Acad Sci U S A. 2018;115:E10265-E10274.
    PubMed     Abstract available

  178. PUENTE-SANCHEZ F, Arce-Rodriguez A, Oggerin M, Garcia-Villadangos M, et al
    Viable cyanobacteria in the deep continental subsurface.
    Proc Natl Acad Sci U S A. 2018;115:10702-10707.
    PubMed     Abstract available

  179. ROHRBACK S, April C, Kaper F, Rivera RR, et al
    Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing.
    Proc Natl Acad Sci U S A. 2018;115:10804-10809.
    PubMed     Abstract available

  180. DOW M, Pyke RM, Tsui BY, Alexandrov LB, et al
    Integrative genomic analysis of mouse and human hepatocellular carcinoma.
    Proc Natl Acad Sci U S A. 2018;115:E9879-E9888.
    PubMed     Abstract available

  181. GUELLIL M, Kersten O, Namouchi A, Bauer EL, et al
    Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia.
    Proc Natl Acad Sci U S A. 2018;115:10422-10427.
    PubMed     Abstract available

  182. WANG X, Pipes L, Trut LN, Herbeck Y, et al
    Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes).
    Proc Natl Acad Sci U S A. 2018;115:10398-10403.
    PubMed     Abstract available

    September 2018
  183. YARRINGTON RM, Verma S, Schwartz S, Trautman JK, et al
    Nucleosomes inhibit target cleavage by CRISPR-Cas9 in vivo.
    Proc Natl Acad Sci U S A. 2018;115:9351-9358.
    PubMed     Abstract available

  184. CHU B, He A, Tian Y, He W, et al
    Photoaffinity-engineered protein scaffold for systematically exploring native phosphotyrosine signaling complexes in tumor samples.
    Proc Natl Acad Sci U S A. 2018;115:E8863-E8872.
    PubMed     Abstract available

  185. GASSAWAY BM, Petersen MC, Surovtseva YV, Barber KW, et al
    PKCepsilon contributes to lipid-induced insulin resistance through cross talk with p70S6K and through previously unknown regulators of insulin signaling.
    Proc Natl Acad Sci U S A. 2018;115:E8996-E9005.
    PubMed     Abstract available

  186. TEREKHOV SS, Smirnov IV, Malakhova MV, Samoilov AE, et al
    Ultrahigh-throughput functional profiling of microbiota communities.
    Proc Natl Acad Sci U S A. 2018;115:9551-9556.
    PubMed     Abstract available

    August 2018
  187. GEORGE RJ, Plog S, Watson AS, Schmidt KL, et al
    Archaeogenomic evidence from the southwestern US points to a pre-Hispanic scarlet macaw breeding colony.
    Proc Natl Acad Sci U S A. 2018;115:8740-8745.
    PubMed     Abstract available

  188. PATAKI CI, Rodrigues J, Zhang L, Qian J, et al
    Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial alpha-helical membrane anchors.
    Proc Natl Acad Sci U S A. 2018;115:E8172-E8180.
    PubMed     Abstract available

  189. SHIN JW
    Squeezing cells through the epigenetic machinery.
    Proc Natl Acad Sci U S A. 2018;115:8472-8474.

  190. SEVERO MS, Landry JJM, Lindquist RL, Goosmann C, et al
    Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging.
    Proc Natl Acad Sci U S A. 2018;115:E7568-E7577.
    PubMed     Abstract available

    July 2018
  191. HAZZI NA, Moreno JS, Ortiz-Movliav C, Palacio RD, et al
    Biogeographic regions and events of isolation and diversification of the endemic biota of the tropical Andes.
    Proc Natl Acad Sci U S A. 2018;115:7985-7990.
    PubMed     Abstract available

    June 2018
  192. SCAIEWICZ A, Levitt M
    Unique function words characterize genomic proteins.
    Proc Natl Acad Sci U S A. 2018;115:6703-6708.
    PubMed     Abstract available

  193. FREGEL R, Mendez FL, Bokbot Y, Martin-Socas D, et al
    Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe.
    Proc Natl Acad Sci U S A. 2018;115:6774-6779.
    PubMed     Abstract available

    Pharmacogenomics of antioxidant supplementation to prevent age-related macular degeneration.
    Proc Natl Acad Sci U S A. 2018;115:E5639.

  195. VAVVAS DG, Small KW, Awh C, Zanke BW, et al
    Reply to Vickers: Pharmacogenetics and progression to neovascular age-related macular degeneration-Evidence supporting practice change.
    Proc Natl Acad Sci U S A. 2018;115:E5640-E5641.

  196. NYERGES A, Csorgo B, Draskovits G, Kintses B, et al
    Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance.
    Proc Natl Acad Sci U S A. 2018;115:E5726-E5735.
    PubMed     Abstract available

  197. KLEINER M, Dong X, Hinzke T, Wippler J, et al
    Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities.
    Proc Natl Acad Sci U S A. 2018;115:E5576-E5584.
    PubMed     Abstract available

  198. GYORFFY BA, Kun J, Torok G, Bulyaki E, et al
    Local apoptotic-like mechanisms underlie complement-mediated synaptic pruning.
    Proc Natl Acad Sci U S A. 2018;115:6303-6308.
    PubMed     Abstract available

  199. HUGHES LC, Orti G, Huang Y, Sun Y, et al
    Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data.
    Proc Natl Acad Sci U S A. 2018;115:6249-6254.
    PubMed     Abstract available

    QnAs with Joanne Chory.
    Proc Natl Acad Sci U S A. 2018;115:6102-6103.

  201. DAI J, Liang K, Zhao S, Jia W, et al
    Chemoproteomics reveals baicalin activates hepatic CPT1 to ameliorate diet-induced obesity and hepatic steatosis.
    Proc Natl Acad Sci U S A. 2018 Jun 11. pii: 1801745115.
    PubMed     Abstract available

  202. NAIR P
    QnAs with Caroline Dean.
    Proc Natl Acad Sci U S A. 2018;115:5824-5826.

  203. RADI R
    Oxygen radicals, nitric oxide, and peroxynitrite: Redox pathways in molecular medicine.
    Proc Natl Acad Sci U S A. 2018;115:5839-5848.
    PubMed     Abstract available

  204. TOLEMAN CA, Schumacher MA, Yu SH, Zeng W, et al
    Structural basis of O-GlcNAc recognition by mammalian 14-3-3 proteins.
    Proc Natl Acad Sci U S A. 2018;115:5956-5961.
    PubMed     Abstract available

  205. PARK J, Lim CJ, Shen M, Park HJ, et al
    Epigenetic switch from repressive to permissive chromatin in response to cold stress.
    Proc Natl Acad Sci U S A. 2018;115:E5400-E5409.
    PubMed     Abstract available

  206. SRIVASTAVA G, Mehrotra RC, Dilcher DL
    Paleocene Ipomoea (Convolvulaceae) from India with implications for an East Gondwana origin of Convolvulaceae.
    Proc Natl Acad Sci U S A. 2018;115:6028-6033.
    PubMed     Abstract available

  207. PORTER LL, Looger LL
    Extant fold-switching proteins are widespread.
    Proc Natl Acad Sci U S A. 2018;115:5968-5973.
    PubMed     Abstract available

  208. ANTONELLI A, Zizka A, Carvalho FA, Scharn R, et al
    Amazonia is the primary source of Neotropical biodiversity.
    Proc Natl Acad Sci U S A. 2018;115:6034-6039.
    PubMed     Abstract available

    May 2018
  209. WANG GD, Zhang BL, Zhou WW, Li YX, et al
    Selection and environmental adaptation along a path to speciation in the Tibetan frog Nanorana parkeri.
    Proc Natl Acad Sci U S A. 2018;115:E5056-E5065.
    PubMed     Abstract available

  210. SHEN X, Shen S, Li J, Hu Q, et al
    IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts.
    Proc Natl Acad Sci U S A. 2018;115:E4767-E4776.
    PubMed     Abstract available

  211. ZHAO J, Lupino K, Wilkins BJ, Qiu C, et al
    Genomic integration of ERRgamma-HNF1beta regulates renal bioenergetics and prevents chronic kidney disease.
    Proc Natl Acad Sci U S A. 2018;115:E4910-E4919.
    PubMed     Abstract available

  212. CHAMPER J, Liu J, Oh SY, Reeves R, et al
    Reducing resistance allele formation in CRISPR gene drive.
    Proc Natl Acad Sci U S A. 2018;115:5522-5527.
    PubMed     Abstract available

  213. VAN VELZEN R, Holmer R, Bu F, Rutten L, et al
    Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses.
    Proc Natl Acad Sci U S A. 2018;115:E4700-E4709.
    PubMed     Abstract available

  214. WANG J, Schultz PG, Johnson KA
    Mechanistic studies of a small-molecule modulator of SMN2 splicing.
    Proc Natl Acad Sci U S A. 2018;115:E4604-E4612.
    PubMed     Abstract available

  215. WANG X, Chen ZH, Yang C, Zhang X, et al
    Genomic adaptation to drought in wild barley is driven by edaphic natural selection at the Tabigha Evolution Slope.
    Proc Natl Acad Sci U S A. 2018;115:5223-5228.
    PubMed     Abstract available

  216. CLEVES PA, Strader ME, Bay LK, Pringle JR, et al
    CRISPR/Cas9-mediated genome editing in a reef-building coral.
    Proc Natl Acad Sci U S A. 2018;115:5235-5240.
    PubMed     Abstract available

  217. DOCTROW B
    QnAs with Howard Y. Chang.
    Proc Natl Acad Sci U S A. 2018;115:4805-4806.

  218. AHMED F
    QnAs with Donald Geman.
    Proc Natl Acad Sci U S A. 2018;115:4528-4529.

  219. DINALANKARA W, Ke Q, Xu Y, Ji L, et al
    Digitizing omics profiles by divergence from a baseline.
    Proc Natl Acad Sci U S A. 2018;115:4545-4552.
    PubMed     Abstract available

    April 2018
  220. HEO S, Diering GH, Na CH, Nirujogi RS, et al
    Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover.
    Proc Natl Acad Sci U S A. 2018;115:E3827-E3836.
    PubMed     Abstract available

  221. PONCE DE LEON MS, Koesbardiati T, Weissmann JD, Milella M, et al
    Human bony labyrinth is an indicator of population history and dispersal from Africa.
    Proc Natl Acad Sci U S A. 2018;115:4128-4133.
    PubMed     Abstract available

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    Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk.
    Proc Natl Acad Sci U S A. 2018;115:4140-4145.
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    Processes and patterns of interaction as units of selection: An introduction to ITSNTS thinking.
    Proc Natl Acad Sci U S A. 2018;115:4006-4014.
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  224. BIRZU G, Hallatschek O, Korolev KS
    Fluctuations uncover a distinct class of traveling waves.
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  225. MOLLER S, du Plessis L, Stadler T
    Impact of the tree prior on estimating clock rates during epidemic outbreaks.
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  226. GRUBER A, Hornburg D, Antonin M, Krahmer N, et al
    Molecular and structural architecture of polyQ aggregates in yeast.
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    Precise Cas9 targeting enables genomic mutation prevention.
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    Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia.
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    Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria.
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    Inner Workings: Better sequencing tech may help keep planets clean.
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    A comprehensive genomic history of extinct and living elephants.
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    Highly multiplexed and quantitative cell-surface protein profiling using genetically barcoded antibodies.
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  243. BELIVEAU BJ, Kishi JY, Nir G, Sasaki HM, et al
    OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.
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    Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling.
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    February 2018
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    How should we compare different genomic estimates of the strength of inbreeding depression?
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    Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.
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    Immunogenetic novelty confers a selective advantage in host-pathogen coevolution.
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    Proc Natl Acad Sci U S A. 2018;115:E1174-E1183.
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    Large genomic insertion at the Shh locus results in hammer toes through enhancer adoption.
    Proc Natl Acad Sci U S A. 2018;115:839-841.

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    Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis.
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    HELLS and CDCA7 comprise a bipartite nucleosome remodeling complex defective in ICF syndrome.
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    Profile of Scott W. Lowe.
    Proc Natl Acad Sci U S A. 2018;115:630-632.

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    Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.
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    Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway.
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    December 2017
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    Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance.
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