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Articles published in Proc Natl Acad Sci U S A

Retrieve available abstracts of 271 articles:
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Single Articles


    October 2026
  1. MARTIN-MOYA D, Grenier JC, Lanigan LT, Pelletier J, et al
    Ancient DNA challenges to admixture narratives: Insights from Notre-Dame Cemetery (1683-1796) in Colonial Montreal, Canada.
    Proc Natl Acad Sci U S A. 2026;123:e2523026123.
    PubMed     Abstract available


  2. SUDASINGHE H, Matschiner M, Britz R, Conway KW, et al
    Convergent genome streamlining accompanies independent miniaturization in the world's smallest fishes.
    Proc Natl Acad Sci U S A. 2026;123:e2614605123.
    PubMed     Abstract available


  3. DU S, Wang Y, Zhang F, Engel MS, et al
    Phylogenomics confirms Palaeoptera monophyly and illuminates the origin of winged insects.
    Proc Natl Acad Sci U S A. 2026;123:e2614706123.
    PubMed     Abstract available


  4. LI C, Zhou Z, Wu T, Wang Z, et al
    Cellular remodeling during reversible life-stage transition in sessile ciliates: Genomic and transcriptomic insights.
    Proc Natl Acad Sci U S A. 2026;123:e2536061123.
    PubMed     Abstract available


  5. FROMMEYER YN, Sun J, Wu J, Kennepohl B, et al
    Dynamic tRNA modification programs align codon usage with growth-phase-specific gene expression in Pseudomonas aeruginosa.
    Proc Natl Acad Sci U S A. 2026;123:e2615985123.
    PubMed     Abstract available


  6. ASUZU DT, Bhatt D, Mullaney D, Mandal D, et al
    Phosphoproteomic dysregulation promotes tumor proliferation in Cushing's disease.
    Proc Natl Acad Sci U S A. 2026;123:e2528513123.
    PubMed     Abstract available


    September 2026
  7. JABER QZ, Yu NJ, Masuda I, Hou YM, et al
    Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA.
    Proc Natl Acad Sci U S A. 2026;123:e2613881123.
    PubMed     Abstract available


  8. YANG L, Bianchini G, Paps J, Sanchez-Baracaldo P, et al
    The genomic origins of cyanobacterial morphological diversity.
    Proc Natl Acad Sci U S A. 2026;123:e2608186123.
    PubMed     Abstract available


  9. FRUMENCE E, Klitting R, Serres K, Shao Y, et al
    Unraveling the epidemiological and dispersal dynamics of the 2024-2025 chikungunya virus epidemic on Reunion Island.
    Proc Natl Acad Sci U S A. 2026;123:e2621019123.
    PubMed     Abstract available


  10. TRIPATHI SJ, Chakraborty S, Wood NB, Hoopes D, et al
    Catechol-O-methyltransferase connects dopamine homeostasis to redox signaling, metal homeostasis, and protein folding in schizophrenia.
    Proc Natl Acad Sci U S A. 2026;123:e2606205123.
    PubMed     Abstract available


  11. TESTA L, Klei L, Rengle A, K Yocum A, et al
    Estimating protein isoform abundances with [Formula: see text].
    Proc Natl Acad Sci U S A. 2026;123:e2614319123.
    PubMed     Abstract available


  12. SUER SG, Arnoux J, Lim YY, Dhurve G, et al
    Bacterial stress responses lower mRNA-protein level correlations.
    Proc Natl Acad Sci U S A. 2026;123:e2613102123.
    PubMed     Abstract available


  13. VAN THIEL J, Dowell NL, Smith CF, Sanchez EE, et al
    The genomic origins and evolutionary path to a key innovation in the world's most venomous snakes.
    Proc Natl Acad Sci U S A. 2026;123:e2621054123.
    PubMed     Abstract available


  14. KELLER M, Guellil M, Slavin P, Saag L, et al
    A refined phylochronology of the second plague pandemic in Western Eurasia.
    Proc Natl Acad Sci U S A. 2026;123:e2534899123.
    PubMed     Abstract available


  15. ZHANG B, Hsieh YH, Bales TR, Butler SD, et al
    Lysine iminylation derived from omega-3 polyunsaturated fatty acids.
    Proc Natl Acad Sci U S A. 2026;123:e2525618123.
    PubMed     Abstract available


  16. HUO S, Ma M, Qian S, Zhang M, et al
    Hex-MASP for mapping the whole-tissue spatial proteome and the intrabrain distribution of monoclonal antibodies.
    Proc Natl Acad Sci U S A. 2026;123:e2532946123.
    PubMed     Abstract available


  17. ELIKAEE S, Mukherjee SK, Johnson PJ
    Impact of pH and Mycoplasma hominis endosymbiosis on Trichomonas vaginalis pathogenesis.
    Proc Natl Acad Sci U S A. 2026;123:e2610627123.
    PubMed     Abstract available


  18. WILLIAMS SCP
    Profile of C. Robin Buell.
    Proc Natl Acad Sci U S A. 2026;123:e2625944123.
    PubMed     Abstract available


  19. HUBERMAN LB, Villalobos-Escobedo JM, Skerker JM, Shi R, et al
    Barcoded mutant library enables high-throughput functional genomics in a filamentous fungus.
    Proc Natl Acad Sci U S A. 2026;123:e2616888123.
    PubMed     Abstract available


  20. YOON S, Santos MD, Khalatyan N, Savas JN, et al
    Ank3 loss in adult forebrain excitatory neurons disrupts behavior, neuronal activity, membrane proteome, and myelination.
    Proc Natl Acad Sci U S A. 2026;123:e2606900123.
    PubMed     Abstract available


  21. NICKODEM CA, Tran PQ, Neeno-Eckwall E, Naing N, et al
    Soil management practices shape the abundance, diversity, and spread of antimicrobial resistance.
    Proc Natl Acad Sci U S A. 2026;123:e2605731123.
    PubMed     Abstract available


    August 2026
  22. PARK J, Jo G, Reyes Y, Pickens W, et al
    Serum IgA proteomics reveals clonal composition and neutralization of dimeric and monomeric IgA repertoires against human norovirus.
    Proc Natl Acad Sci U S A. 2026;123:e2603905123.
    PubMed     Abstract available


  23. TRINH CS, Shrestha R, Mao P, Conner WC, et al
    Mapping the architecture of protein complexes in Arabidopsis using cross-linking mass spectrometry.
    Proc Natl Acad Sci U S A. 2026;123:e2519615123.
    PubMed     Abstract available


  24. WANG T, Fiscus CJ, Landis JB, Cochetel N, et al
    The dynamics of introgression and parallel adaptation across North American Vitis species.
    Proc Natl Acad Sci U S A. 2026;123:e2607754123.
    PubMed     Abstract available


  25. LIU X, Tang D, Zhang J, Li T, et al
    3D epigenomic landscape of the human retinal pigment epithelium.
    Proc Natl Acad Sci U S A. 2026;123:e2526200123.
    PubMed     Abstract available


  26. ZHANG Y, Wang K, Li Z, Yu X, et al
    Population genomics reveals ginseng domestication and ginsenoside biosynthesis.
    Proc Natl Acad Sci U S A. 2026;123:e2535250123.
    PubMed     Abstract available


  27. HE L, Johansson HJ, Vazquez-Liebanas E, Liu J, et al
    A reference protein atlas of the adult mouse brain vasculature.
    Proc Natl Acad Sci U S A. 2026;123:e2614173123.
    PubMed     Abstract available


  28. HITSCHERICH KJ, Dinerman AJ, Hakim AA, Dulemba V, et al
    Cell surface ADGRG1 and CD86 expression identifies antitumor CD4(+) T cells in human cancer.
    Proc Natl Acad Sci U S A. 2026;123:e2517883123.
    PubMed     Abstract available


    July 2026
  29. ISHIYA K, Mizuno F, Gojobori J, Kumagai M, et al
    High-coverage ancient genomes reveal divergent population histories and prehistoric starch-related genetic variation in Japan.
    Proc Natl Acad Sci U S A. 2026;123:e2606162123.
    PubMed     Abstract available


  30. LIN Z, Zhou M, Ma X, Li M, et al
    H(2)S-mediated protein persulfidation regulates redox metabolic flux underlying salt-stress resilience in rice.
    Proc Natl Acad Sci U S A. 2026;123:e2608150123.
    PubMed     Abstract available


  31. SOEWONGSONO AC, Thompson A, Landis MJ
    Inferring epidemiological parameters under an infectious phylogeography model with visitor dynamics.
    Proc Natl Acad Sci U S A. 2026;123:e2535042123.
    PubMed     Abstract available


  32. METZGER D
    Pierre Chambon, a pioneer of molecular biology and gene regulation in eukaryotes.
    Proc Natl Acad Sci U S A. 2026;123:e2618999123.
    PubMed     Abstract available


  33. KRAUS F, He Y, Jiang Y, Li D, et al
    A human lysosomal storage disorder toolkit for decoding proteome landscapes in cortical-like and dopaminergic-like induced neurons.
    Proc Natl Acad Sci U S A. 2026;123:e2609132123.
    PubMed     Abstract available


  34. BARNY LA, Garcia SK, Houcek AJ, Uzay B, et al
    Proteostasis and unfolded protein response dynamics in human neuron/mouse glia co-cultures reveal a cell-specific maturation response.
    Proc Natl Acad Sci U S A. 2026;123:e2521663123.
    PubMed     Abstract available


    June 2026
  35. JIANG C, Fu Y, Jin B, Gao R, et al
    Nongenetic engineering nanozyme proximity labeling reveals subcellular in situ interactomes and trafficking pathways of nanoparticles.
    Proc Natl Acad Sci U S A. 2026;123:e2521555123.
    PubMed     Abstract available


  36. XU Y, Cai X, Zhou Z, Lopez-Arredondo D, et al
    Genomic reconstruction of upland cotton domestication uncovers staged selection, gene flow, and flowering-time adaptation.
    Proc Natl Acad Sci U S A. 2026;123:e2601246123.
    PubMed     Abstract available


  37. ZHAI G, Zhao F, Wang Y, Jiang Z, et al
    ENO1 couples HDAC1 to regulate histone lactylation and gene transcription.
    Proc Natl Acad Sci U S A. 2026;123:e2535245123.
    PubMed     Abstract available


  38. RADZIWON K, Campbell LA, Mazurkiewicz LE, Jalalishvili S, et al
    Phosphoproteome-derived peptide libraries for deep specificity profiling of phosphatases and phospholyases.
    Proc Natl Acad Sci U S A. 2026;123:e2523183123.
    PubMed     Abstract available


  39. BRAUN T, Reber V, Tiberi C, Frankl A, et al
    Alpha-synuclein fibrils induce budding of mitochondrial-derived vesicles.
    Proc Natl Acad Sci U S A. 2026;123:e2604082123.
    PubMed     Abstract available


  40. WOOLDRIDGE TB, Kapp JD, Ford SM, Seligmann WE, et al
    Ancient DNA from shells reveals delayed genomic erosion and rapid immune adaptation in the critically endangered black abalone.
    Proc Natl Acad Sci U S A. 2026;123:e2600483123.
    PubMed     Abstract available


    May 2026
  41. MALBRANKE C, Zalaffi GP, Bitbol AF
    ProteomeLM: A proteome-scale language model enables accurate and rapid prediction of protein-protein interactions and gene essentiality across taxa.
    Proc Natl Acad Sci U S A. 2026;123:e2524201123.
    PubMed     Abstract available


  42. NING W, Arick MA 2nd, Udall JA, Hsu CY, et al
    Genomic diversity and the domestication history of cotton (Gossypium hirsutum).
    Proc Natl Acad Sci U S A. 2026;123:e2607107123.
    PubMed     Abstract available


  43. PINEAU RM, Bercovich N, Rieseberg LH, Kreiner JM, et al
    Genomic ancestry predicts rapid responses to drought across spatiotemporal scales.
    Proc Natl Acad Sci U S A. 2026;123:e2531142123.
    PubMed     Abstract available


  44. SANTOS-JUNIOR CD, Escobar MC, Huber P, Nino-Garcia JP, et al
    Resource availability structures microbial competition through genomic niche partitioning.
    Proc Natl Acad Sci U S A. 2026;123:e2526391123.
    PubMed     Abstract available


  45. SHAO Y, Suchard MA, Rambaut A, Ji X, et al
    Parallel algorithms for phylogenetic inference under a structured coalescent approximation.
    Proc Natl Acad Sci U S A. 2026;123:e2602412123.
    PubMed     Abstract available


  46. GRAFF A, Ringen EJ, Zakharko T, Stoneking M, et al
    An inverse correlation between structural linguistic and human genetic diversity.
    Proc Natl Acad Sci U S A. 2026;123:e2526762123.
    PubMed     Abstract available


    April 2026
  47. HARRIS M, Mo Z, Siepel A, Garud NR, et al
    The persistence and loss of hard selective sweeps amid admixture in ancient Eurasians.
    Proc Natl Acad Sci U S A. 2026;123:e2528672123.
    PubMed     Abstract available


  48. ALVES-FERREIRA EVC, Barhoumi M, Ferreira TR, Brown MW, et al
    Extensive heterozygosity and genetic exchange among natural populations of Leishmania species.
    Proc Natl Acad Sci U S A. 2026;123:e2537999123.
    PubMed     Abstract available


  49. PAN X, Zhao Y, Luo J, Ding L, et al
    Pathogen hijacks focal adhesion signaling by a T3SS effector CteX.
    Proc Natl Acad Sci U S A. 2026;123:e2530673123.
    PubMed     Abstract available


  50. KORFMANN K, Pope NS, Meleghy M, Tellier A, et al
    Coalescence and translation: A language model for population genetics.
    Proc Natl Acad Sci U S A. 2026;123:e2518956123.
    PubMed     Abstract available


  51. FERRI G, Finamore F, Greco F, Zanelli A, et al
    Metabolic trajectories in developing human neocortical neurons.
    Proc Natl Acad Sci U S A. 2026;123:e2509980123.
    PubMed     Abstract available


    March 2026
  52. LUO YE, Abe-Teh Z, Alsaghir T, Heiden KD, et al
    Fibro-adipogenic progenitor cells from murine SMA muscles are intrinsically adipogenic.
    Proc Natl Acad Sci U S A. 2026;123:e2525423123.
    PubMed     Abstract available


  53. FLOWER CT, White FM
    Tyrosine phosphoproteome profiling identifies cell-intrinsic signals limiting the efficacy of tyrosine kinase inhibitor therapies.
    Proc Natl Acad Sci U S A. 2026;123:e2522090123.
    PubMed     Abstract available


  54. LIPMAN DJ
    Genomic epidemiology of Salmonella and Campylobacter in poultry production: Quantifying the contribution of primary breeders.
    Proc Natl Acad Sci U S A. 2026;123:e2536554123.
    PubMed     Abstract available


  55. MASSILANI D, Peyregne S, Iasi LNM, de Filippo C, et al
    A high-coverage Neandertal genome from the Altai Mountains reveals population structure among Neandertals.
    Proc Natl Acad Sci U S A. 2026;123:e2534576123.
    PubMed     Abstract available


  56. VELLER C, Muralidhar P
    Quantitative system drift.
    Proc Natl Acad Sci U S A. 2026;123:e2527137123.
    PubMed     Abstract available


  57. FAN Y, Su Y, Hao G, Wang F, et al
    Orthogonal disentanglement of single-cell multi-omics reveals private and shared drivers of tissue development and pathogenesis.
    Proc Natl Acad Sci U S A. 2026;123:e2519870123.
    PubMed     Abstract available


  58. LIM CM, Vendruscolo M
    The alpha-synuclein proteostasis network and its translational applications in Parkinson's disease.
    Proc Natl Acad Sci U S A. 2026;123:e2513317123.
    PubMed     Abstract available


  59. ESPINOZA B, Venkatramanan S, Scott Warren A, Lewis BL, et al
    Integrated framework to study genomic surveillance of selective sweeps in multivariants dynamics.
    Proc Natl Acad Sci U S A. 2026;123:e2521031123.
    PubMed     Abstract available


  60. GOODALL J, Pettersson ME, Andersson A, Dahlin I, et al
    The population structure in the Baltic herring reflects natural selection and local adaptation.
    Proc Natl Acad Sci U S A. 2026;123:e2526500123.
    PubMed     Abstract available


  61. OBILLE AR, Hasan R, Rees DJ, Ng J, et al
    Identification and characterization of a wet adhesive protein extracted from Dreissena bugensis, the freshwater quagga mussel.
    Proc Natl Acad Sci U S A. 2026;123:e2537453123.
    PubMed     Abstract available


  62. WANG H, Yuan Z, Su Y, Zheng C, et al
    Dissecting spatial patterning and signaling with directional diffusion in spatial multi-omics.
    Proc Natl Acad Sci U S A. 2026;123:e2517283123.
    PubMed     Abstract available


  63. MACKRELL EJ, Lomenick B, Qiu Y, Jeckel H, et al
    Global analysis of protein degradation reveals instability of diverse regulators in Escherichia coli.
    Proc Natl Acad Sci U S A. 2026;123:e2515265123.
    PubMed     Abstract available


    February 2026
  64. PELED O, Kim J, Greenbaum G
    Network-based genetic monitoring of landscape fragmentation.
    Proc Natl Acad Sci U S A. 2026;123:e2515033123.
    PubMed     Abstract available


  65. KIM J, Sun Y, Ye K, Lee J, et al
    Nutrigenomic profiling identifies ZIP10 (SLC39A10) as a regulator of erythroid zinc homeostasis with genetic associations to anemia risk.
    Proc Natl Acad Sci U S A. 2026;123:e2533600123.
    PubMed     Abstract available


  66. WITKOWSKI J, Stillman B
    James D. Watson (1928-2025): Influencer of science and society.
    Proc Natl Acad Sci U S A. 2026;123:e2600779123.
    PubMed     Abstract available


  67. FENG T, McKibben M, Lovell J, Michelmore R, et al
    Phylogenomic synteny reveals paleohexaploid-derived genomic blocks across Asteraceae.
    Proc Natl Acad Sci U S A. 2026;123:e2426851123.
    PubMed     Abstract available


  68. HAYASHI K, Sekaran S, Simpson P, Ebmeier CC, et al
    Variable thresholds for phosphorylation targets of the ERK signaling pathway.
    Proc Natl Acad Sci U S A. 2026;123:e2517889123.
    PubMed     Abstract available


  69. LIU Y, Hung CM, He Y, Wu F, et al
    Pleistocene demographic histories dominate contemporary genomic diversity in a continental radiation of Himalayan-Hengduan songbirds.
    Proc Natl Acad Sci U S A. 2026;123:e2505642123.
    PubMed     Abstract available


  70. HUANG J, Ahmed R, Akimoto M, Bozelli JC Jr, et al
    In situ NMR and integrative proteomics reveal the interaction signature of serum alpha-synuclein.
    Proc Natl Acad Sci U S A. 2026;123:e2521639123.
    PubMed     Abstract available


  71. KIM AS, Ma K, Reinhardt CJ, Lazar DC, et al
    Integrated phenotypic screening and chemical proteomics identifies ETF1 ligands that modulate viral translation and replication.
    Proc Natl Acad Sci U S A. 2026;123:e2524108123.
    PubMed     Abstract available


  72. SHEN B, Pade LR, Zhou F, Nemes P, et al
    Subcellular mass spectrometry reveals proteome remodeling in an asymmetrically dividing (frog) embryonic stem cell.
    Proc Natl Acad Sci U S A. 2026;123:e2518372123.
    PubMed     Abstract available


    January 2026
  73. KOLEY S, Foley K, Perrine Z, Morley SA, et al
    Metabolic rewiring and biomass redistribution enable optimized mixotrophic growth in Chlamydomonas.
    Proc Natl Acad Sci U S A. 2026;123:e2522572123.
    PubMed     Abstract available


  74. VILA-VALLS L, Garcia-Calleja J, Prado-Martinez J, Bosch E, et al
    Sudan's complex genetic admixture history drives adaptation to malaria in Sudanese Copts.
    Proc Natl Acad Sci U S A. 2026;123:e2516263123.
    PubMed     Abstract available


  75. TENGSTEDT ANB, Hoye TT, Kristensen TN, Hansen MM, et al
    Evaluating inbreeding and assessing the risk of outbreeding depression in genetic rescue using whole-genome sequence data.
    Proc Natl Acad Sci U S A. 2026;123:e2526216122.
    PubMed     Abstract available


    December 2025
  76. JANET-MAITRE M, Di Venanzio G, Jackson-Litteken CD, Scott NE, et al
    Intracellular Acinetobacter baumannii acts as a transient reservoir in lung infection via a "persist and resist" strategy.
    Proc Natl Acad Sci U S A. 2025;122:e2511369122.
    PubMed     Abstract available


  77. XIANG R, Breen E, Bolormaa S, Liu Z, et al
    Integrating extensive functional annotations and multiomics of cattle enhances climate resilience prediction and mapping.
    Proc Natl Acad Sci U S A. 2025;122:e2514736122.
    PubMed     Abstract available


  78. DENG Y, DeWitt WS, Song YS, Nielsen R, et al
    A general framework for branch length estimation in Ancestral Recombination Graphs.
    Proc Natl Acad Sci U S A. 2025;122:e2504461122.
    PubMed     Abstract available


  79. DEVADHASAN A, Carja O
    Local negative frequency dependence can decrease global coexistence in fragmented populations.
    Proc Natl Acad Sci U S A. 2025;122:e2513857122.
    PubMed     Abstract available


  80. PARASKEVAIDI M, Raglan O, McKenzie J, Xiang Y, et al
    Lipidomic profiling of endometrial cancer using desorption electrospray ionization mass spectrometry imaging.
    Proc Natl Acad Sci U S A. 2025;122:e2522839122.
    PubMed     Abstract available


    November 2025
  81. KOLBE JJ, Giery ST, Petherick AS, Losos JB, et al
    Morphological and genomic responses to hurricanes arise and persist during a biological invasion.
    Proc Natl Acad Sci U S A. 2025;122:e2517322122.
    PubMed     Abstract available


  82. PASCHOU C, Apokotou O, Charmpi K, Kollias A, et al
    Dysregulated proteostasis in p.A53T-alpha-Synuclein astrocytes aggravates Lewy-like neuropathology in a Parkinson's disease iPSC model.
    Proc Natl Acad Sci U S A. 2025;122:e2505240122.
    PubMed     Abstract available


  83. MERRION HG, Barber CN, Renuse S, Cutler J, et al
    Dynamic extracellular interactions with AMPA receptors.
    Proc Natl Acad Sci U S A. 2025;122:e2517436122.
    PubMed     Abstract available


  84. GOLDEN SS, DeRosier DJ, Dahlberg JE, Sherman LA, et al
    Robert Haselkorn (1934-2025): Pioneer in molecular biology and microbiology.
    Proc Natl Acad Sci U S A. 2025;122:e2522224122.
    PubMed     Abstract available


  85. MATSUMOTO C, Takahashi KK, Iwatsuki M, Yasuda-Yoshihara N, et al
    Genomic and transcriptomic landscape of carcinogenesis in patients with gastric adenocarcinoma and proximal polyposis of the stomach (GAPPS).
    Proc Natl Acad Sci U S A. 2025;122:e2427133122.
    PubMed     Abstract available


    October 2025
  86. HATFULL GF
    All the world's a phage.
    Proc Natl Acad Sci U S A. 2025;122:e2523344122.
    PubMed     Abstract available


  87. TESNIERE C, Boudghene-Stambouli F, Severin M, Poet M, et al
    Intracellular pH regulates ubiquitin-mediated degradation of the MAP kinase ERK3.
    Proc Natl Acad Sci U S A. 2025;122:e2501825122.
    PubMed     Abstract available


  88. SCHWEIZER RM, Grummer JA, Tobin KB, Corpuz R, et al
    Museum genomics suggests long-term population decline in a putatively extinct bumble bee.
    Proc Natl Acad Sci U S A. 2025;122:e2509749122.
    PubMed     Abstract available


  89. JANG E, Ghaffari S, Henry A, Wen G, et al
    Lipid raft proteomics identify endothelial myosin-9 (MYH9) as a regulator of low-density lipoprotein transcytosis and atherosclerosis.
    Proc Natl Acad Sci U S A. 2025;122:e2509315122.
    PubMed     Abstract available


  90. PIERCE MP, Worthington BM, Han S, Ni XB, et al
    Phylogenomics redefines the evolutionary history of mosquitoes.
    Proc Natl Acad Sci U S A. 2025;122:e2519291122.
    PubMed     Abstract available


  91. PENG Z, Fan J, Liu Y, Jia Q, et al
    Uncovering cargo clients and accessory factors of AP-1 and AP-4 through vesicle proteomics.
    Proc Natl Acad Sci U S A. 2025;122:e2508961122.
    PubMed     Abstract available


    September 2025
  92. LANGLOIS RA, Casanova JL
    The potential impacts of human genetics on virus emergence.
    Proc Natl Acad Sci U S A. 2025;122:e2504318122.
    PubMed     Abstract available


  93. PELOSI JA, Davenport R, Kuo LY, Gray LN, et al
    The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant.
    Proc Natl Acad Sci U S A. 2025;122:e2504773122.
    PubMed     Abstract available


  94. SNOW M, Searcy MT, Summers R, Blohm T, et al
    A reanalysis of population dynamics in the Casas Grandes region of Northern Mexico using mitochondrial DNA.
    Proc Natl Acad Sci U S A. 2025;122:e2506162122.
    PubMed     Abstract available


  95. BENTLEY K, Statkute E, Murrell I, Fielding CA, et al
    Virion proteomics of genetically intact HCMV reveals a regulator of envelope glycoprotein composition that protects against humoral immunity.
    Proc Natl Acad Sci U S A. 2025;122:e2425622122.
    PubMed     Abstract available


    August 2025
  96. XIE T, Lin D, Cai XD, Ma LJ, et al
    Nano-biochar regulates phage-host interactions, reducing antibiotic resistance genes in vermicomposting systems.
    Proc Natl Acad Sci U S A. 2025;122:e2511986122.
    PubMed     Abstract available


  97. IZQUIERDO-ARANEGA G, Cuevas-Caballe C, Giannelli F, Paris JR, et al
    Pervasive and recurrent hybridization prevents inbreeding in Europe's most threatened seabird.
    Proc Natl Acad Sci U S A. 2025;122:e2427223122.
    PubMed     Abstract available


  98. GUJRAL O, Bafna M, Alm E, Berger B, et al
    Sparse autoencoders uncover biologically interpretable features in protein language model representations.
    Proc Natl Acad Sci U S A. 2025;122:e2506316122.
    PubMed     Abstract available


  99. LYU L, Gill M, Stott G, Subedi S, et al
    Tracing SARS-CoV-2 clusters across local scales using genomic data.
    Proc Natl Acad Sci U S A. 2025;122:e2501435122.
    PubMed     Abstract available


  100. ZHOU N, Zhang Y, Chen PR, Fan X, et al
    Time-resolved photocatalytic proximity labeling uncovers ER proteome dynamics underlying UPR-to-apoptosis transition.
    Proc Natl Acad Sci U S A. 2025;122:e2503115122.
    PubMed     Abstract available


  101. WANG H, Nielsen J, Zhou YJ, Lu H, et al
    Yeast adapts to diverse ecological niches driven by genomics and metabolic reprogramming.
    Proc Natl Acad Sci U S A. 2025;122:e2502044122.
    PubMed     Abstract available


  102. LASO-JADART R, Corrigan SL, Yang L, Lee SH, et al
    A genomic test of sex-biased dispersal in white sharks.
    Proc Natl Acad Sci U S A. 2025;122:e2507931122.
    PubMed     Abstract available


  103. VAN DER HEIJDEN ESM, Nasvall K, Seixas FA, Beserra Nobre CE, et al
    Genomics of Neotropical biodiversity indicators: Two butterfly radiations with rampant chromosomal rearrangements and hybridization.
    Proc Natl Acad Sci U S A. 2025;122:e2410939122.
    PubMed     Abstract available


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    Translocations contribute to population rescue in an imperiled woodpecker.
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    Genomic origins and evolution of neo-sex chromosomes in Pacific Island birds.
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    July 2025
  106. LIU Y, Sarker AHMR, Sripa B, Tangkawattana S, et al
    A population genetic analysis of the nematode Strongyloides stercoralis in Asia shows that human infection is not a zoonosis from dogs.
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    Climate-linked biogeography of mycorrhizal fungal spore traits.
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  108. VASUDEVAN HN, Arang N, Sacconi Nunez M, Kennedy P, et al
    A transcriptomic, proteomic, and functional genetic atlas dissects neurofibromin function in the peripheral nervous system.
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    Multiomics integration prioritizes potential drug targets for multiple sclerosis.
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    Comparative performance of viral landscape phylogeography approaches.
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    Population structure limits the use of genomic data for predicting phenotypes and managing genetic resources in forest trees.
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  112. ANINTA SG, Drinkwater R, Carmagnini A, Deere NJ, et al
    The importance of small-island populations for the long-term survival of endangered large-bodied insular mammals.
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    June 2025
  113. ZENG W, Guo H, Liu Q, Wong WH, et al
    Improving polygenic prediction from whole-genome sequencing data by leveraging predicted epigenomic features.
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  114. GORELIK A, Paulo JA, Schroeter CB, Lad M, et al
    CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity.
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    A proteomic signature of healthspan.
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    Study design and the sampling of deleterious rare variants in biobank-scale datasets.
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    Phylogenomics reveals the slow-burning fuse of diatom evolution.
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    May 2025
  118. YAMASHITA H, Matsumoto T, Kawashima K, Abdulla Daanaa HS, et al
    Dinucleotide preferences underlie apparent codon preference reversals in the Drosophila melanogaster lineage.
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  119. MARTIS S, Schwab DJ, GrandPre T
    Trait-space patterning is dictated by the tempo and mode of mutation.
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    Stability of general cognitive ability from infancy to adulthood: A combined twin and genomic investigation.
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    Environmental resistome-guided development of resistance-tolerant antibiotics.
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    Transcriptomic and proteomic ramifications of segmental amplification in Escherichia coli.
    Proc Natl Acad Sci U S A. 2025;122:e2422424122.
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  123. GUPTA A, Mirarab S, Turakhia Y
    Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES.
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  124. JO Y, Greene TT, Chiale C, Zhang K, et al
    Genomic analysis of progenitors in viral infection implicates glucocorticoids as suppressors of plasmacytoid dendritic cell generation.
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    Molecular organization of central cholinergic synapses.
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    Proteostasis landscapes of cystic fibrosis variants reveal drug response vulnerability.
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    Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps.
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    Genomics highlight an underestimation of phenology sensitivity to the urban heat island effect.
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    Conserved leucine-rich repeat proteins in the adhesive projectile slime of velvet worms.
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    RNA-targeted proteomics identifies YBX1 as critical for efficient HCMV mRNA translation.
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    February 2025
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    The genomic and epigenomic landscapes of hemizygous genes across crops with contrasting reproductive systems.
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    January 2025
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    Increasing pesticide diversity impairs soil microbial functions.
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    December 2024
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    Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals.
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    The genetic origins and impacts of historical Papuan migrations into Wallacea.
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    November 2024
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    A tale of two cultures: How L. Luca Cavalli-Sforza bridged the gap between science and the humanities.
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    Genetic differentiation and precolonial Indigenous cultivation of hazelnut (Corylus cornuta, Betulaceae) in Western North America.
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    Parallel phosphoproteomics and metabolomics map the global metabolic tyrosine phosphoproteome.
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    Ultradeep O-GlcNAc proteomics reveals widespread O-GlcNAcylation on tyrosine residues of proteins.
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    Mapping the future of oxidative RNA damage in neurodegeneration: Rethinking the status quo with new tools.
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    October 2024
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    A protein phosphatase 1 specific phosphatase targeting peptide (PhosTAP) to identify the PP1 phosphatome.
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    Deep silicification-assisted long-term preservation of structural and genomic information across biospecies: From micro to macro.
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    Joining forces to push past paradoxes: Combining quantitative genetics and genomics shows evolution hiding in plain sight.
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    Proteomic and phosphoproteomic landscape of localized prostate cancer unveils distinct molecular subtypes and insights into precision therapeutics.
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    September 2024
  157. ARMSTRONG EE, Mooney JA, Solari KA, Kim BY, et al
    Unraveling the genomic diversity and admixture history of captive tigers in the United States.
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    Large-scale genome sequencing of giant pandas improves the understanding of population structure and future conservation initiatives.
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    Memory effects of prior subculture may impact the quality of multiomic perturbation profiles.
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    Capturing the fusion of two ancestries and kinship structures in Merovingian Flanders.
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    Mapping seasonal migration in a songbird hybrid zone -- heritability, genetic correlations, and genomic patterns linked to speciation.
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    What one genus of showy moths can say about migration, adaptation, and wing pattern.
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    Algal chloroplast pyrenoids: Evidence for convergent evolution.
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    The evolutionary genomics of adaptation to stress in wild rhizobium bacteria.
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    Modeling the mosaic structure of bacterial genomes to infer their evolutionary history.
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    Cross-pollination in seed-blended refuge and selection for Vip3A resistance in a lepidopteran pest as detected by genomic monitoring.
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    Heritability within groups is uninformative about differences among groups: Cases from behavioral, evolutionary, and statistical genetics.
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    The temporal and genomic scale of selection following hybridization.
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    Comparative chemical genomics in Babesia species identifies the alkaline phosphatase PhoD as a determinant of antiparasitic resistance.
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    Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes.
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  210. ZHANG Y, Zhang H, Wu Y
    A general approach for inferring the ancestry of recent ancestors of an admixed individual.
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  211. YUAN J, Kitchener AC, Lackey LB, Sun T, et al
    The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids.
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  212. VAUGHAN TG, Scire J, Nadeau SA, Stadler T, et al
    Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data.
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    December 2023
  213. WEN J, Nasrallah IM, Abdulkadir A, Satterthwaite TD, et al
    Genomic loci influence patterns of structural covariance in the human brain.
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  214. ZHU S, Liu J, Patel V, Zhao X, et al
    Antigen exposure reshapes chromatin architecture in central memory CD8(+) T cells and imprints enhanced recall capacity.
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  215. SKAAR EP
    Biogeography of the genus Staphylococci on human skin.
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  216. ZHONG X, Moresco JJ, Diedrich JK, Pinto AM, et al
    Essential role of MFSD1-GLMP-GIMAP5 in lymphocyte survival and liver homeostasis.
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  217. BLANCO-PASTOR JL
    Inclusion of highly admixed genotypes in grapevine genomic analyses leads to an equivocal reconstruction of its domestication history.
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  218. JIN L, Chen Y, Muzaffar S, Li C, et al
    Epigenetic switch reshapes epithelial progenitor cell signatures and drives inflammatory pathogenesis in hidradenitis suppurativa.
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    November 2023
  219. ESPINOZA B, Adiga A, Venkatramanan S, Warren AS, et al
    Coupled models of genomic surveillance and evolving pandemics with applications for timely public health interventions.
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  220. TORRES ROBLES J, Lou HJ, Shi G, Pan PL, et al
    Linear motif specificity in signaling through p38alpha and ERK2 mitogen-activated protein kinases.
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  221. SIMMONS M, Horbelt N, Sverko T, Scoppola E, et al
    Invasive mussels fashion silk-like byssus via mechanical processing of massive horizontally acquired coiled coils.
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  222. JOGLEKAR P, Conlan S, Lee-Lin SQ, Deming C, et al
    Integrated genomic and functional analyses of human skin-associated Staphylococcus reveal extensive inter- and intra-species diversity.
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  223. HU W, Zhang R, Xu H, Li Y, et al
    CAMSAP1 role in orchestrating structure and dynamics of manchette microtubule minus-ends impacts male fertility during spermiogenesis.
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    October 2023
  224. BENEGAS G, Batra SS, Song YS
    DNA language models are powerful predictors of genome-wide variant effects.
    Proc Natl Acad Sci U S A. 2023;120:e2311219120.
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  225. CAO X, Kose C, Selby CP, Sancar A, et al
    In vitro DNA repair genomics using XR-seq with Escherichia coli and mammalian cell-free extracts.
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  226. MATHUR S, Mason AJ, Bradburd GS, Gibbs HL, et al
    Functional genomic diversity is correlated with neutral genomic diversity in populations of an endangered rattlesnake.
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  227. XIE Y, Ersan S, Guan X, Wang J, et al
    Unexpected metabolic rewiring of CO(2) fixation in H(2)-mediated materials-biology hybrids.
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  228. LIAO SE, Sudarshan M, Regev O
    Deciphering RNA splicing logic with interpretable machine learning.
    Proc Natl Acad Sci U S A. 2023;120:e2221165120.
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  229. DUFRESNES C, Poyarkov N, Jablonski D
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    Genomic analysis reveals a cryptic pangolin species.
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    September 2023
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    Starting at Go: Protein structure prediction succumbs to machine learning.
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  232. MASON FM, Kounlavong ES, Tebeje AT, Dahiya R, et al
    SETD2 safeguards the genome against isochromosome formation.
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  233. SIRECI M, Munoz MA, Grilli J
    Environmental fluctuations explain the universal decay of species-abundance correlations with phylogenetic distance.
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  234. OH DH, Ma X, Hogg SJ, He J, et al
    Rationally designed chimeric PI3K-BET bromodomain inhibitors elicit curative responses in MYC-driven lymphoma.
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  235. TAKAKURA M, Lam YH, Nakagawa R, Ng MY, et al
    Differential second messenger signaling via dopamine neurons bidirectionally regulates memory retention.
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    August 2023
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    Folding stabilities of ribosome-bound nascent polypeptides probed by mass spectrometry.
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    The genomic landscape of swine influenza A viruses in Southeast Asia.
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    Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods.
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    Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis.
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    ADAM17 targeting by human cytomegalovirus remodels the cell surface proteome to simultaneously regulate multiple immune pathways.
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    Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins.
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    July 2023
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    Population genomics reveals meiotic recombination in Fusarium oxysporum.
    Proc Natl Acad Sci U S A. 2023;120:e2309677120.
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  244. DAVIDI L, Gallaher SD, Ben-David E, Purvine SO, et al
    Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management.
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    Genomic fold of a "naked" ssRNA virus is critical for stability and propagation.
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  247. GU Z, Wang L, Dong Q, Xu K, et al
    Aberrant LYZ expression in tumor cells serves as the potential biomarker and target for HCC and promotes tumor progression via csGRP78.
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    Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex.
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    Human gut bacteria tailor extracellular vesicle cargo for the breakdown of diet- and host-derived glycans.
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    Hiding in plain sight: Genome-wide recombination and a dynamic accessory genome drive diversity in Fusarium oxysporum f.sp. ciceris.
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    June 2023
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    Evolutionarily diverse origins of deformed wing viruses in western honey bees.
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    Complex evolutionary processes maintain an ancient chromosomal inversion.
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  254. HARRISON LB, Behr MA
    Mutation rates and the molecular epidemiology of Mycobacterium abscessus.
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  255. GOMEZ-BAENA G, Pounder KC, Halstead JO, Roberts SA, et al
    Unraveling female communication through scent marks in the Norway rat.
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    FBXO11 constitutes a major negative regulator of MHC class II through ubiquitin-dependent proteasomal degradation of CIITA.
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    Adaptive and maladaptive introgression in grapevine domestication.
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    Ablation of ZC3H11A causes early embryonic lethality and dysregulation of metabolic processes.
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    May 2023
  259. SHIRAKAWA KT, Sala FA, Miyachiro MM, Job V, et al
    Architecture and genomic arrangement of the MurE-MurF bacterial cell wall biosynthesis complex.
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    High sensitivity top-down proteomics captures single muscle cell heterogeneity in large proteoforms.
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    The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis.
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    April 2023
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    Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein-protein interactions in the human cell.
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    Genomic and structural basis for evolution of tropane alkaloid biosynthesis.
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    Loss of regulation of protein synthesis and turnover underpins an attenuated stress response in senescent human mesenchymal stem cells.
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    Genomics-driven breeding for local adaptation of durum wheat is enhanced by farmers' traditional knowledge.
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  268. HUANG K, Jahani M, Gouzy J, Legendre A, et al
    The genomics of linkage drag in inbred lines of sunflower.
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    Improving the use of plant genetic resources to sustain breeding programs' efficiency.
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    March 2023
  270. LATRILLE T, Rodrigue N, Lartillot N
    Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale.
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    February 2023
  271. SCHMID C, Schiffels S
    Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data.
    Proc Natl Acad Sci U S A. 2023;120:e2218375120.
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