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Articles published in PLoS Comput Biol

Retrieve available abstracts of 32 articles:
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Single Articles

    September 2022
  1. WALTARI E, Nafees S, McCutcheon KM, Wong J, et al
    AIRRscape: An interactive tool for exploring B-cell receptor repertoires and antibody responses.
    PLoS Comput Biol. 2022;18:e1010052.
    PubMed     Abstract available

  2. BULLOCK ME, Moreno-Martinez N, Miller-Jensen K
    A transcriptional cycling model recapitulates chromatin-dependent features of noisy inducible transcription.
    PLoS Comput Biol. 2022;18:e1010152.
    PubMed     Abstract available

    August 2022
  3. LUNDGREN E, Romero-Severson E, Albert J, Leitner T, et al
    Combining biomarker and virus phylogenetic models improves HIV-1 epidemiological source identification.
    PLoS Comput Biol. 2022;18:e1009741.
    PubMed     Abstract available

    April 2022
  4. MAYER BT, deCamp AC, Huang Y, Schiffer JT, et al
    Optimizing clinical dosing of combination broadly neutralizing antibodies for HIV prevention.
    PLoS Comput Biol. 2022;18:e1010003.
    PubMed     Abstract available

  5. CONTI S, Ovchinnikov V, Faris JG, Chakraborty AK, et al
    Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV.
    PLoS Comput Biol. 2022;18:e1009391.
    PubMed     Abstract available

  6. HOEHN KB, Pybus OG, Kleinstein SH
    Phylogenetic analysis of migration, differentiation, and class switching in B cells.
    PLoS Comput Biol. 2022;18:e1009885.
    PubMed     Abstract available

  7. KUMATA R, Iwanami S, Mar KB, Kakizoe Y, et al
    Antithetic effect of interferon-alpha on cell-free and cell-to-cell HIV-1 infection.
    PLoS Comput Biol. 2022;18:e1010053.
    PubMed     Abstract available

    February 2022
  8. KLINK GV, Kalinina OV, Bazykin GA
    Phylogenetic inference of changes in amino acid propensities with single-position resolution.
    PLoS Comput Biol. 2022;18:e1009878.
    PubMed     Abstract available

  9. CHAI H, Gu Q, Hughes J, Robertson DL, et al
    In silico prediction of HIV-1-host molecular interactions and their directionality.
    PLoS Comput Biol. 2022;18:e1009720.
    PubMed     Abstract available

  10. ZELNER J, Masters NB, Naraharisetti R, Mojola SA, et al
    There are no equal opportunity infectors: Epidemiological modelers must rethink our approach to inequality in infection risk.
    PLoS Comput Biol. 2022;18:e1009795.
    PubMed     Abstract available

    January 2022
  11. BRYER AJ, Reddy T, Lyman E, Perilla JR, et al
    Full scale structural, mechanical and dynamical properties of HIV-1 liposomes.
    PLoS Comput Biol. 2022;18:e1009781.
    PubMed     Abstract available

    December 2021
  12. ZHANG L, Wang J, von Kleist M
    Numerical approaches for the rapid analysis of prophylactic efficacy against HIV with arbitrary drug-dosing schemes.
    PLoS Comput Biol. 2021;17:e1009295.
    PubMed     Abstract available

  13. KREGER J, Komarova NL, Wodarz D
    A hybrid stochastic-deterministic approach to explore multiple infection and evolution in HIV.
    PLoS Comput Biol. 2021;17:e1009713.
    PubMed     Abstract available

  14. THINDWA D, Wolter N, Pinsent A, Carrim M, et al
    Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016-2018: A hidden Markov modelling study.
    PLoS Comput Biol. 2021;17:e1009680.
    PubMed     Abstract available

    October 2021
  15. BALAKRISHNA S, Salazar-Vizcaya L, Schmidt AJ, Kachalov V, et al
    Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study.
    PLoS Comput Biol. 2021;17:e1009529.
    PubMed     Abstract available

    September 2021
  16. GOSCE L, Abou Jaoude GJ, Kedziora DJ, Benedikt C, et al
    Optima TB: A tool to help optimally allocate tuberculosis spending.
    PLoS Comput Biol. 2021;17:e1009255.
    PubMed     Abstract available

  17. POSADA-CESPEDES S, Van Zyl G, Montazeri H, Kuipers J, et al
    Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C.
    PLoS Comput Biol. 2021;17:e1008363.
    PubMed     Abstract available

  18. PICKLES M, Cori A, Probert WJM, Sauter R, et al
    PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial.
    PLoS Comput Biol. 2021;17:e1009301.
    PubMed     Abstract available

  19. MAZROUEE S, Little SJ, Wertheim JO
    Incorporating metadata in HIV transmission network reconstruction: A machine learning feasibility assessment.
    PLoS Comput Biol. 2021;17:e1009336.
    PubMed     Abstract available

    August 2021
  20. BLASSEL L, Tostevin A, Villabona-Arenas CJ, Peeters M, et al
    Using machine learning and big data to explore the drug resistance landscape in HIV.
    PLoS Comput Biol. 2021;17:e1008873.
    PubMed     Abstract available

    July 2021
  21. CODY JW, Ellis-Connell AL, O'Connor SL, Pienaar E, et al
    Mathematical modeling of N-803 treatment in SIV-infected non-human primates.
    PLoS Comput Biol. 2021;17:e1009204.
    PubMed     Abstract available

    June 2021
  22. BYRNE CM, Johnston C, Orem J, Okuku F, et al
    Examining the dynamics of Epstein-Barr virus shedding in the tonsils and the impact of HIV-1 coinfection on daily saliva viral loads.
    PLoS Comput Biol. 2021;17:e1009072.
    PubMed     Abstract available

  23. WELLS CR, Cao Y, Durham DP, Byrareddy SN, et al
    Mechanistic basis of post-treatment control of SIV after anti-alpha4beta7 antibody therapy.
    PLoS Comput Biol. 2021;17:e1009031.
    PubMed     Abstract available

    March 2021
  24. RIPOLL DR, Chaudhury S, Wallqvist A
    Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification.
    PLoS Comput Biol. 2021;17:e1008864.
    PubMed     Abstract available

    February 2021
  25. FISCON G, Conte F, Farina L, Paci P, et al
    SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19.
    PLoS Comput Biol. 2021;17:e1008686.
    PubMed     Abstract available

  26. DEARLOVE B, Tovanabutra S, Owen CL, Lewitus E, et al
    Factors influencing estimates of HIV-1 infection timing using BEAST.
    PLoS Comput Biol. 2021;17:e1008537.
    PubMed     Abstract available

    January 2021
  27. TESEI G, Martins JM, Kunze MBA, Wang Y, et al
    DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles.
    PLoS Comput Biol. 2021;17:e1008551.
    PubMed     Abstract available

    November 2020
  28. SAHA A, Dixit NM
    Pre-existing resistance in the latent reservoir can compromise VRC01 therapy during chronic HIV-1 infection.
    PLoS Comput Biol. 2020;16:e1008434.
    PubMed     Abstract available

  29. BARKER CT, Vaidya NK
    Modeling HIV-1 infection in the brain.
    PLoS Comput Biol. 2020;16:e1008305.
    PubMed     Abstract available

    October 2020
  30. MAGEE AF, Hohna S, Vasylyeva TI, Leache AD, et al
    Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts.
    PLoS Comput Biol. 2020;16:e1007999.
    PubMed     Abstract available

  31. DORIGATTI E, Schubert B
    Graph-theoretical formulation of the generalized epitope-based vaccine design problem.
    PLoS Comput Biol. 2020;16:e1008237.
    PubMed     Abstract available

  32. VAN DORP CH, Conway JM, Barouch DH, Whitney JB, et al
    Models of SIV rebound after treatment interruption that involve multiple reactivation events.
    PLoS Comput Biol. 2020;16:e1008241.
    PubMed     Abstract available

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