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Articles published in PLoS Comput Biol

Retrieve available abstracts of 22 articles:
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Single Articles


    April 2019
  1. ROSENBLOOM DIS, Bacchetti P, Stone M, Deng X, et al
    Assessing intra-lab precision and inter-lab repeatability of outgrowth assays of HIV-1 latent reservoir size.
    PLoS Comput Biol. 2019;15:e1006849.
    PubMed     Text format     Abstract available


  2. MAGARET CA, Benkeser DC, Williamson BD, Borate BR, et al
    Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features.
    PLoS Comput Biol. 2019;15:e1006952.
    PubMed     Text format     Abstract available


  3. CONTI S, Karplus M
    Estimation of the breadth of CD4bs targeting HIV antibodies by molecular modeling and machine learning.
    PLoS Comput Biol. 2019;15:e1006954.
    PubMed     Text format     Abstract available


    February 2019
  4. METZIG C, Ratmann O, Bezemer D, Colijn C, et al
    Phylogenies from dynamic networks.
    PLoS Comput Biol. 2019;15:e1006761.
    PubMed     Text format     Abstract available


    January 2019
  5. DUWAL S, Dickinson L, Khoo S, von Kleist M, et al
    Mechanistic framework predicts drug-class specific utility of antiretrovirals for HIV prophylaxis.
    PLoS Comput Biol. 2019;15:e1006740.
    PubMed     Text format     Abstract available


    December 2018
  6. EREN K, Weaver S, Ketteringham R, Valentyn M, et al
    Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons.
    PLoS Comput Biol. 2018;14:e1006498.
    PubMed     Text format     Abstract available


    October 2018
  7. WODARZ D, Skinner PJ, Levy DN, Connick E, et al
    Virus and CTL dynamics in the extrafollicular and follicular tissue compartments in SIV-infected macaques.
    PLoS Comput Biol. 2018;14:e1006461.
    PubMed     Text format     Abstract available


    September 2018
  8. NA H, Song G
    All-atom normal mode dynamics of HIV-1 capsid.
    PLoS Comput Biol. 2018;14:e1006456.
    PubMed     Text format     Abstract available


  9. QUADEER AA, Morales-Jimenez D, McKay MR
    Co-evolution networks of HIV/HCV are modular with direct association to structure and function.
    PLoS Comput Biol. 2018;14:e1006409.
    PubMed     Text format     Abstract available


    August 2018
  10. AMITAI A, Chakraborty AK, Kardar M
    The low spike density of HIV may have evolved because of the effects of T helper cell depletion on affinity maturation.
    PLoS Comput Biol. 2018;14:e1006408.
    PubMed     Text format     Abstract available


    June 2018
  11. DUWAL S, Dickinson L, Khoo S, von Kleist M, et al
    Hybrid stochastic framework predicts efficacy of prophylaxis against HIV: An example with different dolutegravir prophylaxis schemes.
    PLoS Comput Biol. 2018;14:e1006155.
    PubMed     Text format     Abstract available


    April 2018
  12. BYRNE CM, Gantt S, Coombs D
    Effects of spatiotemporal HSV-2 lesion dynamics and antiviral treatment on the risk of HIV-1 acquisition.
    PLoS Comput Biol. 2018;14:e1006129.
    PubMed     Text format     Abstract available


  13. YU WH, Zhao P, Draghi M, Arevalo C, et al
    Exploiting glycan topography for computational design of Env glycoprotein antigenicity.
    PLoS Comput Biol. 2018;14:e1006093.
    PubMed     Text format     Abstract available


    March 2018
  14. GAHBAUER S, Pluhackova K, Bockmann RA
    Closely related, yet unique: Distinct homo- and heterodimerization patterns of G protein coupled chemokine receptors and their fine-tuning by cholesterol.
    PLoS Comput Biol. 2018;14:e1006062.
    PubMed     Text format     Abstract available


  15. FRYER HR, Wolinsky SM, McLean AR
    Increased T cell trafficking as adjunct therapy for HIV-1.
    PLoS Comput Biol. 2018;14:e1006028.
    PubMed     Text format     Abstract available


    February 2018
  16. SEVY AM, Panda S, Crowe JE Jr, Meiler J, et al
    Integrating linear optimization with structural modeling to increase HIV neutralization breadth.
    PLoS Comput Biol. 2018;14:e1005999.
    PubMed     Text format     Abstract available


  17. GUPTA V, Dixit NM
    Trade-off between synergy and efficacy in combinations of HIV-1 latency-reversing agents.
    PLoS Comput Biol. 2018;14:e1006004.
    PubMed     Text format     Abstract available


  18. NEAGU IA, Olejarz J, Freeman M, Rosenbloom DIS, et al
    Life cycle synchronization is a viral drug resistance mechanism.
    PLoS Comput Biol. 2018;14:e1005947.
    PubMed     Text format     Abstract available


    November 2017
  19. MCCLOSKEY RM, Poon AFY
    A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation.
    PLoS Comput Biol. 2017;13:e1005868.
    PubMed     Text format     Abstract available


    October 2017
  20. HAKE A, Pfeifer N
    Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time.
    PLoS Comput Biol. 2017;13:e1005789.
    PubMed     Text format     Abstract available


  21. PULLER V, Neher R, Albert J
    Estimating time of HIV-1 infection from next-generation sequence diversity.
    PLoS Comput Biol. 2017;13:e1005775.
    PubMed     Text format     Abstract available


    September 2017
  22. LIU Y, Zou X
    Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization.
    PLoS Comput Biol. 2017;13:e1005733.
    PubMed     Text format     Abstract available


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