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Bacterial Infections and Mycoses

Free Subscription Articles published in PLoS Comput Biol Retrieve available abstracts of 34 articles: HTML format

Single Articles

February 2024
1. DATTA M, Kennedy M, Siri S, Via LE, et al
   Mathematical model of oxygen, nutrient, and drug transport in Tuberculosis Granulomas.
   PLoS Comput Biol. 2024;20:e1011847.
   PubMed     Abstract available
   
   
   January 2024
2. PANDEY A, Feuka AB, Cosgrove M, Moriarty M, et al
   Wildlife vaccination strategies for eliminating bovine tuberculosis in white-tailed deer populations.
   PLoS Comput Biol. 2024;20:e1011287.
   PubMed     Abstract available
   
   
   
3. LO IACONO G, Cook AJC, Derks G, Fleming LE, et al
   A mathematical, classical stratification modeling approach to disentangling the impact of weather on infectious diseases: A case study using spatio-temporally disaggregated Campylobacter surveillance data for England and Wales.
   PLoS Comput Biol. 2024;20:e1011714.
   PubMed     Abstract available
   
   
   December 2023
4. MULBERRY N, Rutherford AR, Colijn C
   Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling.
   PLoS Comput Biol. 2023;19:e1011755.
   PubMed     Abstract available
   
   
   
5. CARRUTHERS J, Finnie T
   Using mixture density networks to emulate a stochastic within-host model of Francisella tularensis infection.
   PLoS Comput Biol. 2023;19:e1011266.
   PubMed     Abstract available
   
   
   November 2023
6. HEUPINK TH, Verboven L, Sharma A, Rennie V, et al
   The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples.
   PLoS Comput Biol. 2023;19:e1011648.
   PubMed     Abstract available
   
   
   
7. COLGATE ER, Klopfer C, Dickson DM, Lee B, et al
   Network analysis of patterns and relevance of enteric pathogen co-infections among infants in a diarrhea-endemic setting.
   PLoS Comput Biol. 2023;19:e1011624.
   PubMed     Abstract available
   
   
   
8. HALLSTROM E, Kandavalli V, Ranefall P, Elf J, et al
   Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy.
   PLoS Comput Biol. 2023;19:e1011181.
   PubMed     Abstract available
   
   
   
9. WESSEL RE, Dolatshahi S
   Quantitative mechanistic model reveals key determinants of placental IgG transfer and informs prenatal immunization strategies.
   PLoS Comput Biol. 2023;19:e1011109.
   PubMed     Abstract available
   
   
   October 2023
10. OJALA F, Sater MRA, Miller LG, McKinnell JA, et al
    Bayesian modeling of the impact of antibiotic resistance on the efficiency of MRSA decolonization.
    PLoS Comput Biol. 2023;19:e1010898.
    PubMed     Abstract available
    
    
    
11. CASCANTE-VEGA J, Galanti M, Schley K, Pei S, et al
    Inference of transmission dynamics and retrospective forecast of invasive meningococcal disease.
    PLoS Comput Biol. 2023;19:e1011564.
    PubMed     Abstract available
    
    
    September 2023
12. GRANA-MIRAGLIA L, Morales-Lizcano N, Wang PW, Hwang DM, et al
    Predictive modeling of antibiotic eradication therapy success for new-onset Pseudomonas aeruginosa pulmonary infections in children with cystic fibrosis.
    PLoS Comput Biol. 2023;19:e1011424.
    PubMed     Abstract available
    
    
    August 2023
13. LEE CY, Diegel J, France MT, Ravel J, et al
    Evaluation of vaginal microbiome equilibrium states identifies microbial parameters linked to resilience after menses and antibiotic therapy.
    PLoS Comput Biol. 2023;19:e1011295.
    PubMed     Abstract available
    
    
    July 2023
14. VARGAS R, Abbott L, Bower D, Frahm N, et al
    Gene signature discovery and systematic validation across diverse clinical cohorts for TB prognosis and response to treatment.
    PLoS Comput Biol. 2023;19:e1010770.
    PubMed     Abstract available
    
    
    June 2023
15. BUDAK M, Cicchese JM, Maiello P, Borish HJ, et al
    Optimizing tuberculosis treatment efficacy: Comparing the standard regimen with Moxifloxacin-containing regimens.
    PLoS Comput Biol. 2023;19:e1010823.
    PubMed     Abstract available
    
    
    April 2023
16. MARTINECZ A, Boeree MJ, Diacon AH, Dawson R, et al
    High rifampicin peak plasma concentrations accelerate the slow phase of bacterial decline in tuberculosis patients: Evidence for heteroresistance.
    PLoS Comput Biol. 2023;19:e1011000.
    PubMed     Abstract available
    
    
    December 2022
17. GOLDSTEIN IH, Bayer D, Barilar I, Kizito B, et al
    Using genetic data to identify transmission risk factors: Statistical assessment and application to tuberculosis transmission.
    PLoS Comput Biol. 2022;18:e1010696.
    PubMed     Abstract available
    
    
    November 2022
18. CAVALLARO M, Coelho J, Ready D, Decraene V, et al
    Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease.
    PLoS Comput Biol. 2022;18:e1010726.
    PubMed     Abstract available
    
    
    
19. CHAO E, Chato C, Vender R, Olabode AS, et al
    Molecular source attribution.
    PLoS Comput Biol. 2022;18:e1010649.
    PubMed    
    
    
    July 2022
20. MIETCHEN MS, Short CT, Samore M, Lofgren ET, et al
    Examining the impact of ICU population interaction structure on modeled colonization dynamics of Staphylococcus aureus.
    PLoS Comput Biol. 2022;18:e1010352.
    PubMed     Abstract available
    
    
    April 2022
21. WEERASURIYA CK, Harris RC, McQuaid CF, Gomez GB, et al
    Updating age-specific contact structures to match evolving demography in a dynamic mathematical model of tuberculosis vaccination.
    PLoS Comput Biol. 2022;18:e1010002.
    PubMed     Abstract available
    
    
    
22. SAEIDPOUR A, Bansal S, Rohani P
    Dissecting recurrent waves of pertussis across the boroughs of London.
    PLoS Comput Biol. 2022;18:e1009898.
    PubMed     Abstract available
    
    
    March 2022
23. GODIJK NG, Bootsma MCJ, van Werkhoven HC, Schweitzer VA, et al
    Does plasmid-based beta-lactam resistance increase E. coli infections: Modelling addition and replacement mechanisms.
    PLoS Comput Biol. 2022;18:e1009875.
    PubMed     Abstract available
    
    
    February 2022
24. WANG S, Reeve SM, Holt GT, Ojewole AA, et al
    Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus.
    PLoS Comput Biol. 2022;18:e1009855.
    PubMed     Abstract available
    
    
    
25. YAESOUBI R, Cohen T, Hsu K, Gift TL, et al
    Evaluating spatially adaptive guidelines for the treatment of gonorrhea to reduce the incidence of gonococcal infection and increase the effective lifespan of antibiotics.
    PLoS Comput Biol. 2022;18:e1009842.
    PubMed     Abstract available
    
    
    
26. LOCHEN A, Truscott JE, Croucher NJ
    Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates.
    PLoS Comput Biol. 2022;18:e1009389.
    PubMed     Abstract available
    
    
    December 2021
27. EWALD J, Rivieccio F, Radosa L, Schuster S, et al
    Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis.
    PLoS Comput Biol. 2021;17:e1009645.
    PubMed     Abstract available
    
    
    
28. SAH P, Otterstatter M, Leu ST, Leviyang S, et al
    Revealing mechanisms of infectious disease spread through empirical contact networks.
    PLoS Comput Biol. 2021;17:e1009604.
    PubMed     Abstract available
    
    
    November 2021
29. DUAN Q, Carmody C, Donovan B, Guy RJ, et al
    Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in Australia.
    PLoS Comput Biol. 2021;17:e1009385.
    PubMed     Abstract available
    
    
    October 2021
30. BALAKRISHNA S, Salazar-Vizcaya L, Schmidt AJ, Kachalov V, et al
    Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study.
    PLoS Comput Biol. 2021;17:e1009529.
    PubMed     Abstract available
    
    
    September 2021
31. GOSCE L, Abou Jaoude GJ, Kedziora DJ, Benedikt C, et al
    Optima TB: A tool to help optimally allocate tuberculosis spending.
    PLoS Comput Biol. 2021;17:e1009255.
    PubMed     Abstract available
    
    
    July 2021
32. NOROY C, Meyer DF
    The super repertoire of type IV effectors in the pangenome of Ehrlichia spp. provides insights into host-specificity and pathogenesis.
    PLoS Comput Biol. 2021;17:e1008788.
    PubMed     Abstract available
    
    
    June 2021
33. O'HARE A, Balaz D, Wright DM, McCormick C, et al
    A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir.
    PLoS Comput Biol. 2021;17:e1009005.
    PubMed     Abstract available
    
    
    
34. SANDHU SK, Bayliss CD, Morozov AY
    How does feedback from phage infections influence the evolution of phase variation in Campylobacter?
    PLoS Comput Biol. 2021;17:e1009067.
    PubMed     Abstract available
    
    

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