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30.12.2018

2 Clin Infect Dis
7 Diagn Microbiol Infect Dis
13 Eur J Clin Microbiol Infect Dis
2 J Antimicrob Chemother
1 J Infect Dis
5 JAMA
2 Lancet Glob Health
2 Lancet Infect Dis
1 MMWR Morb Mortal Wkly Rep
1 Pediatrics
14 PLoS Negl Trop Dis
21 PLoS One


  Retrieve available abstracts of this week’s articles:
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Single Articles


    Clin Infect Dis

  1. HALL R, Shaughnessy M, Boll G, Warner K, et al
    Drug-Use and Post-Operative Mortality Following Valve Surgery for Infective Endocarditis: A Systematic Review and Meta-Analysis.
    Clin Infect Dis. 2018 Dec 22. pii: 5257358. doi: 10.1093/cid/ciy1064.
    PubMed     Text format     Abstract available

  2. SCHUETZ AN
    Laboratory Antimicrobial Stewardship during an Outbreak of Linezolid- and Vancomycin-Resistant Enterococcus faecium Bacteremia.
    Clin Infect Dis. 2018 Dec 4. pii: 5229260. doi: 10.1093/cid/ciy1023.
    PubMed     Text format    


    Diagn Microbiol Infect Dis

  3. TAKADAMA S, Nakaminami H, Takii T, Noguchi N, et al
    Identification and detection of USA300 methicillin-resistant Staphylococcus aureus clones with a partial deletion in the ccrB2 gene on the type IV SCCmec element.
    Diagn Microbiol Infect Dis. 2018 Nov 24. pii: S0732-8893(18)30317.
    PubMed     Text format     Abstract available

  4. DUMKOW LE, Axford KL, Suda KJ, Draper HM, et al
    Impact of a stewardship-focused culture follow-up initiative on the treatment of pharyngitis in the emergency department and urgent care settings.
    Diagn Microbiol Infect Dis. 2018;92:136-142.
    PubMed     Text format     Abstract available

  5. HONNAVAR P, Ghosh AK, Paul S, Shankarnarayan SA, et al
    Identification of Malassezia species by MALDI-TOF MS after expansion of database.
    Diagn Microbiol Infect Dis. 2018;92:118-123.
    PubMed     Text format     Abstract available

  6. GOND DP, Singh S, Agrawal NK
    Norepinephrine augmented in vitro growth of uropathogenic E. coli in Type 2 diabetes mellitus and its suppression by silodosin (alpha blocker).
    Diagn Microbiol Infect Dis. 2018;92:85-89.
    PubMed     Text format     Abstract available

  7. DAUM LT, Konstantynovska OS, Solodiankin OS, Poteiko PI, et al
    Characterization of novel Mycobacterium tuberculosis pncA gene mutations in clinical isolates from the Ukraine.
    Diagn Microbiol Infect Dis. 2018 Nov 10. pii: S0732-8893(18)30585.
    PubMed     Text format     Abstract available

  8. ZHENG S, Soh JXJ, Shafi H
    Quadruple valve infective endocarditis presenting with suspected Austrian syndrome: a case report and a case series of quadruple valve infective endocarditis.
    Diagn Microbiol Infect Dis. 2018 Dec 4. pii: S0732-8893(18)30688.
    PubMed     Text format     Abstract available

  9. DANIEL-WAYMAN S, Fahle G, Palmore T, Green KY, et al
    Norovirus, astrovirus, and sapovirus among immunocompromised patients at a tertiary care research hospital.
    Diagn Microbiol Infect Dis. 2018;92:143-146.
    PubMed     Text format     Abstract available


    Eur J Clin Microbiol Infect Dis

  10. YAO S, Yagi S, Nagao M, Uozumi R, et al
    Etiologies, risk factors, and outcomes of bacterial cholangitis after living donor liver transplantation.
    Eur J Clin Microbiol Infect Dis. 2018;37:1973-1982.
    PubMed     Text format     Abstract available

  11. DO NASCIMENTO VERAS H, Medeiros PHQS, Ribeiro SA, Freitas TM, et al
    Campylobacter jejuni virulence genes and immune-inflammatory biomarkers association with growth impairment in children from Northeastern Brazil.
    Eur J Clin Microbiol Infect Dis. 2018;37:2011-2020.
    PubMed     Text format     Abstract available

  12. YANG T, Zou Y, Zhou W, Ruan Z, et al
    Clonal diversity of Ureaplasma species and its relationship with oligozoospermia and semen quality in Chinese infertile males.
    Eur J Clin Microbiol Infect Dis. 2018;37:1957-1963.
    PubMed     Text format     Abstract available

  13. SONDA T, Kumburu H, van Zwetselaar M, Alifrangis M, et al
    Molecular epidemiology of virulence and antimicrobial resistance determinants in Klebsiella pneumoniae from hospitalised patients in Kilimanjaro, Tanzania.
    Eur J Clin Microbiol Infect Dis. 2018;37:1901-1914.
    PubMed     Text format     Abstract available

  14. SALEHI Z, Shams-Ghahfarokhi M, Razzaghi-Abyaneh M
    Antifungal drug susceptibility profile of clinically important dermatophytes and determination of point mutations in terbinafine-resistant isolates.
    Eur J Clin Microbiol Infect Dis. 2018;37:1841-1846.
    PubMed     Text format     Abstract available

  15. THELEN P, Hornberg K, Hamprecht A
    Efficient processing of MRSA screening specimens by a modified inoculation protocol.
    Eur J Clin Microbiol Infect Dis. 2018;37:1857-1861.
    PubMed     Text format     Abstract available

  16. BELLES A, Bueno J, Rojo-Bezares B, Torres C, et al
    Characterisation of VIM-2-producing Pseudomonas aeruginosa isolates from lower tract respiratory infections in a Spanish hospital.
    Eur J Clin Microbiol Infect Dis. 2018;37:1847-1856.
    PubMed     Text format     Abstract available

  17. LA MARTIRE G, Robin C, Oubaya N, Lepeule R, et al
    De-escalation and discontinuation strategies in high-risk neutropenic patients: an interrupted time series analyses of antimicrobial consumption and impact on outcome.
    Eur J Clin Microbiol Infect Dis. 2018;37:1931-1940.
    PubMed     Text format     Abstract available

  18. VALERIO M, Vena A, Rodriguez-Gonzalez CG, de Vega EC, et al
    Repeated antifungal use audits are essential for selecting the targets for intervention in antifungal stewardship.
    Eur J Clin Microbiol Infect Dis. 2018;37:1993-2000.
    PubMed     Text format     Abstract available

  19. SADEGHPOUR HERAVI F, Nikbin VS, Nakhost Lotfi M, Badiri P, et al
    Strain variation and antigenic divergence among Bordetella pertussis circulating strains isolated from patients in Iran.
    Eur J Clin Microbiol Infect Dis. 2018;37:1893-1900.
    PubMed     Text format     Abstract available

  20. AYUB KHAN MN, Verstegen DML, Bhatti ABH, Dolmans DHJM, et al
    Factors hindering the implementation of surgical site infection control guidelines in the operating rooms of low-income countries: a mixed-method study.
    Eur J Clin Microbiol Infect Dis. 2018;37:1923-1929.
    PubMed     Text format     Abstract available

  21. COHEN STUART J, Leverstein-Van Hall M, Kortmann W, Verlind J, et al
    Ceftibuten plus amoxicillin-clavulanic acid for oral treatment of urinary tract infections with ESBL producing E. coli and K. pneumoniae: a retrospective observational case-series.
    Eur J Clin Microbiol Infect Dis. 2018 Aug 16. pii: 10.1007/s10096-018-3338.
    PubMed     Text format     Abstract available

  22. HENNINGSSON AJ, Lager M, Brannstrom R, Tjernberg I, et al
    The chemokine CXCL13 in cerebrospinal fluid in children with Lyme neuroborreliosis.
    Eur J Clin Microbiol Infect Dis. 2018;37:1983-1991.
    PubMed     Text format     Abstract available


    J Antimicrob Chemother

  23. MACFADYEN AC, Harrison EM, Drigo I, Parkhill J, et al
    A mecC allotype, mecC3, in the CoNS Staphylococcus caeli, encoded within a variant SCCmecC.
    J Antimicrob Chemother. 2018 Dec 22. pii: 5258045. doi: 10.1093.
    PubMed     Text format     Abstract available

  24. KOSMIDIS C, Rodriguez-Goncer I, Rautemaa-Richardson R, Richardson MD, et al
    Therapeutic drug monitoring and adverse events of delayed-release posaconazole tablets in patients with chronic pulmonary aspergillosis.
    J Antimicrob Chemother. 2018 Dec 26. pii: 5262264. doi: 10.1093.
    PubMed     Text format     Abstract available


    J Infect Dis

  25. FRANK DJ, Horne DJ, Dutta NK, Shaku MT, et al
    Remembering the Host in Tuberculosis Drug Development.
    J Infect Dis. 2018 Dec 21. pii: 5257354. doi: 10.1093.
    PubMed     Text format     Abstract available


    JAMA

  26. SHAPIRO ED, Wormser GP
    Controversies About Lyme Disease-Reply.
    JAMA. 2018;320:2482-2483.
    PubMed     Text format    

  27. KINI V, Ho PM
    Interventions to Improve Medication Adherence: A Review.
    JAMA. 2018;320:2461-2473.
    PubMed     Text format     Abstract available

  28. LEGRAND M, Kellum JA
    Serum Creatinine in the Critically Ill Patient With Sepsis.
    JAMA. 2018;320:2369-2370.
    PubMed     Text format    

  29. WITTEKAMP BH, Plantinga NL, Cooper BS, Lopez-Contreras J, et al
    Decontamination Strategies and Bloodstream Infections With Antibiotic-Resistant Microorganisms in Ventilated Patients: A Randomized Clinical Trial.
    JAMA. 2018 Oct 22. pii: 2709677. doi: 10.1001/jama.2018.13765.
    PubMed     Text format     Abstract available

  30. ABBASI J
    Artificial Intelligence Tools for Sepsis and Cancer.
    JAMA. 2018;320:2303.
    PubMed     Text format    


    Lancet Glob Health

  31. UKWAJA KN
    Social protection interventions could improve tuberculosis treatment outcomes.
    Lancet Glob Health. 2018 Dec 21. pii: S2214-109X(18)30523.
    PubMed     Text format    

  32. OLIOSI JGN, Reis-Santos B, Locatelli RL, Sales CMM, et al
    Effect of the Bolsa Familia Programme on the outcome of tuberculosis treatment: a prospective cohort study.
    Lancet Glob Health. 2018 Dec 21. pii: S2214-109X(18)30478.
    PubMed     Text format     Abstract available


    Lancet Infect Dis

  33. LI KT, Tang W, Wu D, Huang W, et al
    Pay-it-forward strategy to enhance uptake of dual gonorrhea and chlamydia testing among men who have sex with men in China: a pragmatic, quasi-experimental study.
    Lancet Infect Dis. 2019;19:76-82.
    PubMed     Text format     Abstract available

  34. HU Z, Lu SH, Lowrie DB, Fan XY, et al
    The predictive values of the tuberculin skin test and interferon-gamma release assays for active tuberculosis development.
    Lancet Infect Dis. 2019;19:19-20.
    PubMed     Text format    


    MMWR Morb Mortal Wkly Rep

  35. HERCULES Y, Bryant NJ, Wallace RM, Nelson R, et al
    Rabies in a Dog Imported from Egypt - Connecticut, 2017.
    MMWR Morb Mortal Wkly Rep. 2018;67:1388-1391.
    PubMed     Text format     Abstract available


    Pediatrics

  36. KOTLOFF KL, Shirley DT, Creech CB, Frey SE, et al
    Mupirocin for Staphylococcus aureus Decolonization of Infants in Neonatal Intensive Care Units.
    Pediatrics. 2018 Dec 26. pii: peds.2018-1565. doi: 10.1542/peds.2018-1565.
    PubMed     Text format     Abstract available


    PLoS Negl Trop Dis

  37. AZIZ R, Colombe S, Mwakisambwe G, Ndezi S, et al
    Pre-post effects of a tetanus care protocol implementation in a sub-Saharan African intensive care unit.
    PLoS Negl Trop Dis. 2018;12:e0006667.
    PubMed     Text format     Abstract available

  38. WILLEN L, Mertens P, Volf P
    Evaluation of the rSP03B sero-strip, a newly proposed rapid test for canine exposure to Phlebotomus perniciosus, vector of Leishmania infantum.
    PLoS Negl Trop Dis. 2018;12:e0006607.
    PubMed     Text format     Abstract available

  39. JIANG JF, Jiang RR, Chang QC, Zheng YC, et al
    Potential novel tick-borne Colpodella species parasite infection in patient with neurological symptoms.
    PLoS Negl Trop Dis. 2018;12:e0006546.
    PubMed     Text format    

  40. BEDOUI Y, Giry C, Jaffar-Bandjee MC, Selambarom J, et al
    Immunomodulatory drug methotrexate used to treat patients with chronic inflammatory rheumatisms post-chikungunya does not impair the synovial antiviral and bone repair responses.
    PLoS Negl Trop Dis. 2018;12:e0006634.
    PubMed     Text format     Abstract available

  41. DEJON-AGOBE JC, Zinsou JF, Honkpehedji YJ, Ateba-Ngoa U, et al
    Schistosoma haematobium effects on Plasmodium falciparum infection modified by soil-transmitted helminths in school-age children living in rural areas of Gabon.
    PLoS Negl Trop Dis. 2018;12:e0006663.
    PubMed     Text format     Abstract available

  42. AYELO GA, Sopoh GE, Houezo JG, Fiodessihoue R, et al
    Improving clinical and epidemiological predictors of Buruli ulcer.
    PLoS Negl Trop Dis. 2018;12:e0006713.
    PubMed     Text format     Abstract available

  43. WHISTLER T, Sapchookul P, McCormick DW, Sangwichian O, et al
    Epidemiology and antimicrobial resistance of invasive non-typhoidal Salmonellosis in rural Thailand from 2006-2014.
    PLoS Negl Trop Dis. 2018;12:e0006718.
    PubMed     Text format     Abstract available

  44. GOOVAERTS O, Mwinzi PNM, Muok EMO, Ceulemans A, et al
    Aberrant plasma MMP and TIMP dynamics in Schistosoma - Immune reconstitution inflammatory syndrome (IRIS).
    PLoS Negl Trop Dis. 2018;12:e0006710.
    PubMed     Text format     Abstract available

  45. BRIDGER JM, Brindley PJ, Knight M
    The snail Biomphalaria glabrata as a model to interrogate the molecular basis of complex human diseases.
    PLoS Negl Trop Dis. 2018;12:e0006552.
    PubMed     Text format    

  46. DAI R, Wei B, Xiong H, Yang X, et al
    Human plague associated with Tibetan sheep originates in marmots.
    PLoS Negl Trop Dis. 2018;12:e0006635.
    PubMed     Text format     Abstract available

  47. CONVERSE PJ, Almeida DV, Tasneen R, Saini V, et al
    Shorter-course treatment for Mycobacterium ulcerans disease with high-dose rifamycins and clofazimine in a mouse model of Buruli ulcer.
    PLoS Negl Trop Dis. 2018;12:e0006728.
    PubMed     Text format     Abstract available

  48. CARRON M, Chang YM, Momanyi K, Akoko J, et al
    Campylobacter, a zoonotic pathogen of global importance: Prevalence and risk factors in the fast-evolving chicken meat system of Nairobi, Kenya.
    PLoS Negl Trop Dis. 2018;12:e0006658.
    PubMed     Text format     Abstract available

  49. WYNNE JW, Stinear TP, Athan E, Michalski WP, et al
    Low incidence of recurrent Buruli ulcers in treated Australian patients living in an endemic region.
    PLoS Negl Trop Dis. 2018;12:e0006724.
    PubMed     Text format     Abstract available

  50. KRETZSCHMAR GC, Oliveira LC, Nisihara RM, Velavan TP, et al
    Complement receptor 1 (CR1, CD35) association with susceptibility to leprosy.
    PLoS Negl Trop Dis. 2018;12:e0006705.
    PubMed     Text format     Abstract available


    PLoS One

  51. MAHAPATRA S, Ying L, Ho PP, Kurnellas M, et al
    An amyloidogenic hexapeptide derived from amylin attenuates inflammation and acute lung injury in murine sepsis.
    PLoS One. 2018;13:e0199206.
    PubMed     Text format     Abstract available

  52. LEITNER G, Zilberman D, Papirov E, Shefy S, et al
    Assessment of acoustic pulse therapy (APT), a non-antibiotic treatment for dairy cows with clinical and subclinical mastitis.
    PLoS One. 2018;13:e0199195.
    PubMed     Text format     Abstract available

  53. MEJIA OAV, Antunes MJ, Goncharov M, Dallan LRP, et al
    Predictive performance of six mortality risk scores and the development of a novel model in a prospective cohort of patients undergoing valve surgery secondary to rheumatic fever.
    PLoS One. 2018;13:e0199277.
    PubMed     Text format     Abstract available

  54. AHN JG, Kim DS, Kim KH
    Clinical characteristics and cytokine profiles of children with acute lower respiratory tract infections caused by human rhinovirus.
    PLoS One. 2018;13:e0198624.
    PubMed     Text format     Abstract available

  55. CHAUKULKAR S, Sulaeman H, Zink AG, Vredenburg VT, et al
    Pathogen invasion and non-epizootic dynamics in Pacific newts in California over the last century.
    PLoS One. 2018;13:e0197710.
    PubMed     Text format     Abstract available

  56. DAVIDSON KE, Byrne BA, Pires AFA, Magdesian KG, et al
    Antimicrobial resistance trends in fecal Salmonella isolates from northern California dairy cattle admitted to a veterinary teaching hospital, 2002-2016.
    PLoS One. 2018;13:e0199928.
    PubMed     Text format     Abstract available

  57. GARCIA-VIDAL C, Cardozo-Espinola C, Puerta-Alcalde P, Marco F, et al
    Risk factors for mortality in patients with acute leukemia and bloodstream infections in the era of multiresistance.
    PLoS One. 2018;13:e0199531.
    PubMed     Text format     Abstract available

  58. TOMAMICHEL MM, Hodgins NC, Venturelli PA, Phelps NBD, et al
    The prevalence and potential fisheries consequences of Heterosporis sutherlandae in a Minnesota lake.
    PLoS One. 2018;13:e0199580.
    PubMed     Text format     Abstract available

  59. BRAIG S, Berger S, Rothenbacher D, Schmid S, et al
    Time trends in dyspepsia and association with H. pylori and work-related stress-An observational study in white collar employees in 1996 and 2015.
    PLoS One. 2018;13:e0199533.
    PubMed     Text format     Abstract available

  60. TRACTENBERG RE, Groah SL, Rounds AK, Ljungberg IH, et al
    Preliminary validation of a Urinary Symptom Questionnaire for individuals with Neuropathic Bladder using Intermittent Catheterization (USQNB-IC): A patient-centered patient reported outcome.
    PLoS One. 2018;13:e0197568.
    PubMed     Text format     Abstract available

  61. SMITH HK, Pasmans F, Dhaenens M, Deforce D, et al
    Skin mucosome activity as an indicator of Batrachochytrium salamandrivorans susceptibility in salamanders.
    PLoS One. 2018;13:e0199295.
    PubMed     Text format     Abstract available

  62. JHILMEET N, Lowe DM, Riou C, Scriba TJ, et al
    The effect of antiretroviral treatment on selected genes in whole blood from HIV-infected adults sensitised by Mycobacterium tuberculosis.
    PLoS One. 2018;13:e0209516.
    PubMed     Text format     Abstract available

  63. TOOR A, Culibrk L, Singhera GK, Moon KM, et al
    Transcriptomic and proteomic host response to Aspergillus fumigatus conidia in an air-liquid interface model of human bronchial epithelium.
    PLoS One. 2018;13:e0209652.
    PubMed     Text format     Abstract available

  64. KHAN MA, Aldebasi YH, Alsuhaibani SA, AlSahli MA, et al
    Therapeutic potential of thymoquinone liposomes against the systemic infection of Candida albicans in diabetic mice.
    PLoS One. 2018;13:e0208951.
    PubMed     Text format     Abstract available

  65. ENOS M, Sitienei J, Ong'ang'o J, Mungai B, et al
    Kenya tuberculosis prevalence survey 2016: Challenges and opportunities of ending TB in Kenya.
    PLoS One. 2018;13:e0209098.
    PubMed     Text format     Abstract available

  66. BOUZA E, Burillo A, Munoz P, Valerio M, et al
    Do lower respiratory tract samples contribute to the assessment of carriage of Staphylococcus aureus in patients undergoing mechanical ventilation after major heart surgery?
    PLoS One. 2018;13:e0207854.
    PubMed     Text format     Abstract available

  67. MARQUART ME, Benton AH, Galloway RC, Stempak LM, et al
    Antibiotic susceptibility, cytotoxicity, and protease activity of viridans group streptococci causing endophthalmitis.
    PLoS One. 2018;13:e0209849.
    PubMed     Text format     Abstract available

  68. WANG G, Yu F, Lin H, Murugesan K, et al
    Evolution and mutations predisposing to daptomycin resistance in vancomycin-resistant Enterococcus faecium ST736 strains.
    PLoS One. 2018;13:e0209785.
    PubMed     Text format     Abstract available

  69. SLOGOTSKAYA L, Bogorodskaya E, Ivanova D, Sevostyanova T, et al
    Comparative sensitivity of the test with tuberculosis recombinant allergen, containing ESAT6-CFP10 protein, and Mantoux test with 2 TU PPD-L in newly diagnosed tuberculosis children and adolescents in Moscow.
    PLoS One. 2018;13:e0208705.
    PubMed     Text format     Abstract available

  70. FLEISCHMANN-STRUZEK C, Thomas-Ruddel DO, Schettler A, Schwarzkopf D, et al
    Comparing the validity of different ICD coding abstraction strategies for sepsis case identification in German claims data.
    PLoS One. 2018;13:e0198847.
    PubMed     Text format     Abstract available

  71. KALYANA CHAKRAVARTHY S, Jayasudha R, Ranjith K, Dutta A, et al
    Alterations in the gut bacterial microbiome in fungal Keratitis patients.
    PLoS One. 2018;13:e0199640.
    PubMed     Text format     Abstract available


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