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  Bacterial Infections and Mycoses

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04.03.2019

2 Antimicrob Agents Chemother
1 BMJ
3 Clin Infect Dis
7 Eur J Clin Microbiol Infect Dis
1 Infect Immun
1 J Antimicrob Chemother
1 J Bacteriol
2 J Clin Microbiol
1 J Infect Dis
1 J Med Microbiol
3 Lancet
2 Lancet Glob Health
1 MMWR Morb Mortal Wkly Rep
9 N Engl J Med
2 Pediatr Rev
1 PLoS Comput Biol
2 PLoS Med
1 PLoS Negl Trop Dis
13 PLoS One
2 Proc Natl Acad Sci U S A
1 Science


  Retrieve available abstracts of this week’s articles:
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Single Articles


    Antimicrob Agents Chemother

  1. SARATHY J, Blanc L, Alvarez-Cabrera N, O'Brien P, et al
    Fluoroquinolone efficacy against tuberculosis is driven by penetration into lesions and activity against resident bacterial populations.
    Antimicrob Agents Chemother. 2019 Feb 25. pii: AAC.02516.
    PubMed     Text format     Abstract available

  2. NAKANO S, Fujisawa T, Ito Y, Chang B, et al
    Whole-genome sequencing analysis of multidrug-resistant serotype 15A Streptococcus pneumoniae in Japan and the emergence of a highly resistant serotype 15A-ST9084 clone.
    Antimicrob Agents Chemother. 2019 Feb 25. pii: AAC.02579.
    PubMed     Text format     Abstract available


    BMJ

  3. MURPHY C, Cowan A, Moore K, Fader M, et al
    Managing long term indwelling urinary catheters.
    BMJ. 2018;363:k3711.
    PubMed     Text format    


    Clin Infect Dis

  4. SEE I, Mu Y, Albrecht V, Karlsson M, et al
    Trends in incidence of methicillin-resistant Staphylococcus aureus bloodstream infections differ by strain type and healthcare exposure, United States, 2005-2013.
    Clin Infect Dis. 2019 Feb 25. pii: 5364550. doi: 10.1093.
    PubMed     Text format     Abstract available

  5. PERUMAL R, Padayatchi N, Yende-Zuma N, Naidoo A, et al
    A moxifloxacin-based regimen for the treatment of recurrent drug-sensitive pulmonary tuberculosis: An open-label randomised controlled trial.
    Clin Infect Dis. 2019 Feb 27. pii: 5365529. doi: 10.1093.
    PubMed     Text format     Abstract available

  6. SHIRI T, Loyse A, Mwenge L, Chen T, et al
    Addition of flucytosine to fluconazole for the treatment of cryptococcal meningitis in Africa: a multi-country cost-effectiveness analysis.
    Clin Infect Dis. 2019 Feb 28. pii: 5366668. doi: 10.1093.
    PubMed     Text format     Abstract available


    Eur J Clin Microbiol Infect Dis

  7. SUZUKI Y, Horie K, Yada Y, Kono Y, et al
    Vaginal Ureaplasma species increase chorioamnionitis in very preterm infants with preterm premature rupture of the membranes at < 28 weeks of gestation.
    Eur J Clin Microbiol Infect Dis. 2018;37:2371-2380.
    PubMed     Text format     Abstract available

  8. PALACIOS-BAENA ZR, Zapf TC, Ong DSY, Maraolo AE, et al
    How are trainees in clinical microbiology and infectious diseases supervised in Europe? An international cross-sectional questionnaire survey by the Trainee Association of ESCMID.
    Eur J Clin Microbiol Infect Dis. 2018;37:2381-2387.
    PubMed     Text format     Abstract available

  9. ZOU J, Leung V, Champagne S, Hinch M, et al
    Clinical heterogeneity of patients with stool samples testing PCR+/Tox- from a two-step Clostridium difficile diagnostic algorithm.
    Eur J Clin Microbiol Infect Dis. 2018;37:2355-2359.
    PubMed     Text format     Abstract available

  10. CARLSEN S, Boel J, Jarlov JO, Gjorup I, et al
    The effect of short-course gentamicin therapy on kidney function in patients with bacteraemia-a retrospective cohort study.
    Eur J Clin Microbiol Infect Dis. 2018;37:2307-2312.
    PubMed     Text format     Abstract available

  11. SENTHAKUMARAN T, Brandal LT, Lindstedt BA, Jorgensen SB, et al
    Implications of stx loss for clinical diagnostics of Shiga toxin-producing Escherichia coli.
    Eur J Clin Microbiol Infect Dis. 2018;37:2361-2370.
    PubMed     Text format     Abstract available

  12. GHANEM-ZOUBI N, Zorbavel D, Khoury J, Geffen Y, et al
    The association between treatment appropriateness according to EUCAST and CLSI breakpoints and mortality among patients with candidemia: a retrospective observational study.
    Eur J Clin Microbiol Infect Dis. 2018;37:2397-2404.
    PubMed     Text format     Abstract available

  13. HE T, Kaplan SE, Gomez LA, Lu X, et al
    Fecal calprotectin concentrations in cancer patients with Clostridium difficile infection.
    Eur J Clin Microbiol Infect Dis. 2018;37:2341-2346.
    PubMed     Text format     Abstract available


    Infect Immun

  14. BANLA LI, Pickrum AM, Hayward M, Kristich CJ, et al
    Sortase-dependent proteins promote gastrointestinal colonization by enterococci.
    Infect Immun. 2019 Feb 25. pii: IAI.00853-18. doi: 10.1128/IAI.00853.
    PubMed     Text format     Abstract available


    J Antimicrob Chemother

  15. PERISELNERIS J, Nwankwo L, Schelenz S, Shah A, et al
    Posaconazole for the treatment of allergic bronchopulmonary aspergillosis in patients with cystic fibrosis.
    J Antimicrob Chemother. 2019 Feb 25. pii: 5364630. doi: 10.1093.
    PubMed     Text format     Abstract available


    J Bacteriol

  16. JALAL NA, Davey L, Halperin SA, Lee SF, et al
    Identification of redox partners of the thiol-disulfide oxidoreductase SdbA in Streptococcus gordonii.
    J Bacteriol. 2019 Feb 25. pii: JB.00030-19. doi: 10.1128/JB.00030.
    PubMed     Text format     Abstract available


    J Clin Microbiol

  17. PARK JH, Jin CE, Koo B, Kwon J, et al
    A simple microfluidic assay for diagnosing tuberculous meningitis in HIV-uninfected patients.
    J Clin Microbiol. 2019 Feb 27. pii: JCM.01975-18. doi: 10.1128/JCM.01975.
    PubMed     Text format     Abstract available

  18. KOTASKOVA I, Obrucova H, Lyckova V, Ruzicka F, et al
    Capability of fluorescent capillary electrophoresis to distinguish species of Candida parapsilosis complex.
    J Clin Microbiol. 2019 Feb 27. pii: JCM.00135-19. doi: 10.1128/JCM.00135.
    PubMed     Text format     Abstract available


    J Infect Dis

  19. POSTON TB, Lee DE, Darville T, Zhong W, et al
    Cervical cytokines associated with Chlamydia trachomatis susceptibility and protection.
    J Infect Dis. 2019 Mar 1. pii: 5367429. doi: 10.1093.
    PubMed     Text format     Abstract available


    J Med Microbiol

  20. SABZ G, Gharaghani M, Mirhendi H, Ahmadi B, et al
    Clinical and microbial epidemiology of otomycosis in the city of Yasuj, southwest Iran, revealing Aspergillus tubingensis as the dominant causative agent.
    J Med Microbiol. 2019 Feb 25. doi: 10.1099/jmm.0.000948.
    PubMed     Text format     Abstract available


    Lancet

  21. STORY A, Aldridge RW, Smith CM, Garber E, et al
    Smartphone-enabled video-observed versus directly observed treatment for tuberculosis: a multicentre, analyst-blinded, randomised, controlled superiority trial.
    Lancet. 2019 Feb 21. pii: S0140-6736(18)32993.
    PubMed     Text format     Abstract available


  22. Enteral lactoferrin supplementation for very preterm infants: a randomised placebo-controlled trial.
    Lancet. 2019 Jan 8. pii: S0140-6736(18)32221.
    PubMed     Text format     Abstract available

  23. FRASER H, Keshavjee S
    Video-observed therapy for tuberculosis: strengthening care.
    Lancet. 2019 Feb 21. pii: S0140-6736(19)30293.
    PubMed     Text format    


    Lancet Glob Health

  24. NOUBIAP JJ, Nansseu JR, Nyaga UF, Nkeck JR, et al
    Global prevalence of diabetes in active tuberculosis: a systematic review and meta-analysis of data from 2.3 million patients with tuberculosis.
    Lancet Glob Health. 2019 Feb 25. pii: S2214-109X(18)30487.
    PubMed     Text format     Abstract available

  25. AMBERBIR A
    The challenge of worldwide tuberculosis control: and then came diabetes.
    Lancet Glob Health. 2019 Feb 25. pii: S2214-109X(19)30053.
    PubMed     Text format    


    MMWR Morb Mortal Wkly Rep

  26. VALENCIANO SJ, McMullen C, Torres S, Smelser C, et al
    Notes from the Field: Identifying Risk Behaviors for Invasive Group A Streptococcus Infections Among Persons Who Inject Drugs and Persons Experiencing Homelessness - New Mexico, May 2018.
    MMWR Morb Mortal Wkly Rep. 2019;68:205-206.
    PubMed     Text format    


    N Engl J Med

  27. O'RIORDAN W, Green S, Overcash JS, Puljiz I, et al
    Omadacycline for Acute Bacterial Skin and Skin-Structure Infections.
    N Engl J Med. 2019;380:528-538.
    PubMed     Text format     Abstract available

  28. MI MY, Klompas M, Evans L
    Early Administration of Antibiotics for Suspected Sepsis.
    N Engl J Med. 2019;380:593-596.
    PubMed     Text format    

  29. STETS R, Popescu M, Gonong JR, Mitha I, et al
    Omadacycline for Community-Acquired Bacterial Pneumonia.
    N Engl J Med. 2019;380:517-527.
    PubMed     Text format     Abstract available

  30. HUANG SS, Singh R, McKinnell JA, Park S, et al
    Decolonization to Reduce Postdischarge Infection Risk among MRSA Carriers.
    N Engl J Med. 2019;380:638-650.
    PubMed     Text format     Abstract available

  31. WAGENLEHNER FME, Cloutier DJ, Komirenko AS, Cebrik DS, et al
    Once-Daily Plazomicin for Complicated Urinary Tract Infections.
    N Engl J Med. 2019;380:729-740.
    PubMed     Text format     Abstract available

  32. QIN J, Zhang J
    Sporotrichosis.
    N Engl J Med. 2019;380:771.
    PubMed     Text format    

  33. MCKINNELL JA, Dwyer JP, Talbot GH, Connolly LE, et al
    Plazomicin for Infections Caused by Carbapenem-Resistant Enterobacteriaceae.
    N Engl J Med. 2019;380:791-793.
    PubMed     Text format    

  34. MEIS JF, Voss A
    Candida auris in an Intensive Care Setting.
    N Engl J Med. 2019;380:890-891.
    PubMed     Text format    

  35. EYRE DW, Butcher L, Jeffery KJM
    Candida auris in an Intensive Care Setting. Reply.
    N Engl J Med. 2019;380:891.
    PubMed     Text format    


    Pediatr Rev

  36. THUSANG K, Onyearugbulem C, Chao J, Skaricic D, et al
    Case 4: Altered Mental Status in a 6-year-old Boy.
    Pediatr Rev. 2019;40:88-89.
    PubMed     Text format    

  37. MOGILNER L, Katz C
    Pasteurella multocida.
    Pediatr Rev. 2019;40:90-92.
    PubMed     Text format    


    PLoS Comput Biol

  38. POLO G, Mera Acosta C, Labruna MB, Ferreira F, et al
    Hosts mobility and spatial spread of Rickettsia rickettsii.
    PLoS Comput Biol. 2018;14:e1006636.
    PubMed     Text format     Abstract available


    PLoS Med

  39. MABUD TS, de Lourdes Delgado Alves M, Ko AI, Basu S, et al
    Correction: Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil.
    PLoS Med. 2019;16:e1002764.
    PubMed     Text format     Abstract available

  40. SUBBARAMAN R, Nathavitharana RR, Mayer KH, Satyanarayana S, et al
    Constructing care cascades for active tuberculosis: A strategy for program monitoring and identifying gaps in quality of care.
    PLoS Med. 2019;16:e1002754.
    PubMed     Text format     Abstract available


    PLoS Negl Trop Dis

  41. MCKITTRICK ND, Malhotra IJ, Vu DM, Boothroyd DB, et al
    Parasitic infections during pregnancy need not affect infant antibody responses to early vaccination against Streptococcus pneumoniae, diphtheria, or Haemophilus influenzae type B.
    PLoS Negl Trop Dis. 2019;13:e0007172.
    PubMed     Text format     Abstract available


    PLoS One

  42. GUALANO G, Mencarini P, Musso M, Mosti S, et al
    Putting in harm to cure: Drug related adverse events do not affect outcome of patients receiving treatment for multidrug-resistant Tuberculosis. Experience from a tertiary hospital in Italy.
    PLoS One. 2019;14:e0212948.
    PubMed     Text format     Abstract available

  43. LOPEZ-GARNIER S, Sheen P, Zimic M
    Automatic diagnostics of tuberculosis using convolutional neural networks analysis of MODS digital images.
    PLoS One. 2019;14:e0212094.
    PubMed     Text format     Abstract available

  44. DE WOLFE TJ, Eggers S, Barker AK, Kates AE, et al
    Oral probiotic combination of Lactobacillus and Bifidobacterium alters the gastrointestinal microbiota during antibiotic treatment for Clostridium difficile infection.
    PLoS One. 2018;13:e0204253.
    PubMed     Text format     Abstract available

  45. LEWENZA S, Abboud J, Poon K, Kobryn M, et al
    Pseudomonas aeruginosa displays a dormancy phenotype during long-term survival in water.
    PLoS One. 2018;13:e0198384.
    PubMed     Text format     Abstract available

  46. GHASSEMI P, Pfefer TJ, Casamento JP, Simpson R, et al
    Best practices for standardized performance testing of infrared thermographs intended for fever screening.
    PLoS One. 2018;13:e0203302.
    PubMed     Text format     Abstract available

  47. TSCHUDIN-SUTTER S, Fosse N, Frei R, Widmer AF, et al
    Combination therapy for treatment of Pseudomonas aeruginosa bloodstream infections.
    PLoS One. 2018;13:e0203295.
    PubMed     Text format     Abstract available

  48. DENEGRE AA, Ndeffo Mbah ML, Myers K, Fefferman NH, et al
    Emergence of antibiotic resistance in immunocompromised host populations: A case study of emerging antibiotic resistant tuberculosis in AIDS patients.
    PLoS One. 2019;14:e0212969.
    PubMed     Text format     Abstract available

  49. IWAMOTO T, Murase Y, Yoshida S, Aono A, et al
    Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis.
    PLoS One. 2019;14:e0212798.
    PubMed     Text format     Abstract available

  50. NGUYEN DT, Agarwal S, Graviss EA
    Trends of tuberculosis meningitis and associated mortality in Texas, 2010-2017, a large population-based analysis.
    PLoS One. 2019;14:e0212729.
    PubMed     Text format     Abstract available

  51. SOEROTO AY, Lestari BW, Santoso P, Chaidir L, et al
    Evaluation of Xpert MTB-RIF guided diagnosis and treatment of rifampicin-resistant tuberculosis in Indonesia: A retrospective cohort study.
    PLoS One. 2019;14:e0213017.
    PubMed     Text format     Abstract available

  52. LEE JH, Heo S, Jeong M, Jeong DW, et al
    Transfer of a mobile Staphylococcus saprophyticus plasmid isolated from fermented seafood that confers tetracycline resistance.
    PLoS One. 2019;14:e0213289.
    PubMed     Text format     Abstract available

  53. CHOI EJ, Lee HJ, Kim WJ, Han KI, et al
    Enterococcus faecalis EF-2001 protects DNBS-induced inflammatory bowel disease in mice model.
    PLoS One. 2019;14:e0210854.
    PubMed     Text format     Abstract available

  54. KURSKAYA O, Ryabichenko T, Leonova N, Shi W, et al
    Viral etiology of acute respiratory infections in hospitalized children in Novosibirsk City, Russia (2013 - 2017).
    PLoS One. 2018;13:e0200117.
    PubMed     Text format     Abstract available


    Proc Natl Acad Sci U S A


  55. Correction for Copin et al., Sequential evolution of virulence and resistance during clonal spread of community-acquired methicillin-resistant Staphylococcus aureus.
    Proc Natl Acad Sci U S A. 2019 Feb 25. pii: 1902207116.
    PubMed     Text format    

  56. JIANG JH, Bhuiyan MS, Shen HH, Cameron DR, et al
    Antibiotic resistance and host immune evasion in Staphylococcus aureus mediated by a metabolic adaptation.
    Proc Natl Acad Sci U S A. 2019;116:3722-3727.
    PubMed     Text format     Abstract available


    Science

  57. STAPELS DAC, Hill PWS, Westermann AJ, Fisher RA, et al
    Salmonella persisters undermine host immune defenses during antibiotic treatment.
    Science. 2018;362:1156-1160.
    PubMed     Text format     Abstract available


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