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Articles published in J Clin Microbiol

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Single Articles


    May 2020
  1. WHITCOMBE AL, Hanson-Manful P, Jack S, Upton A, et al
    Development and evaluation of a new triplex immunoassay that detects Group A Streptococcus antibodies for the diagnosis of rheumatic fever.
    J Clin Microbiol. 2020 May 27. pii: JCM.00300-20. doi: 10.1128/JCM.00300.
    PubMed     Abstract available


    April 2020
  2. MATIASOVIC J, Zouharova M, Nedbalcova K, Kralova N, et al
    Resolution of Streptococcus suis serotype 1/2 vs. 2 and 1 vs. 14 by PCR-RFLP method.
    J Clin Microbiol. 2020 Apr 29. pii: JCM.00480-20. doi: 10.1128/JCM.00480.
    PubMed     Abstract available


  3. BANERJEE D, Michael J, Schmitt B, Salimnia H, et al
    Multicenter clinical evaluation of Revogene(R) Strep A molecular assay for detection of Streptococcus pyogenes from throat swab specimens.
    J Clin Microbiol. 2020 Apr 22. pii: JCM.01775-19. doi: 10.1128/JCM.01775.
    PubMed     Abstract available


  4. LONG SW, Ojeda Saavedra M, Christensen PA, Musser JM, et al
    Human infections caused by clonally related African clade (clade III) strains of Candida auris in the greater Houston region.
    J Clin Microbiol. 2020 Apr 15. pii: JCM.02063-19. doi: 10.1128/JCM.02063.
    PubMed     Abstract available


  5. HU X, Liao S, Bai H, Gupta S, et al
    LncRNA and predictive model to improve the diagnosis of clinically diagnosed pulmonary tuberculosis.
    J Clin Microbiol. 2020 Apr 15. pii: JCM.01973-19. doi: 10.1128/JCM.01973.
    PubMed     Abstract available


  6. MEHAFFY C, Kruh-Garcia NA, Graham B, Jarlsberg LG, et al
    Identification of Mycobacterium tuberculosis peptides in serum extracellular vesicles from persons with latent tuberculosis infection.
    J Clin Microbiol. 2020 Apr 3. pii: JCM.00393-20. doi: 10.1128/JCM.00393.
    PubMed     Abstract available


    March 2020
  7. BUONSENSO D, Delogu G, Perricone C, Grossi R, et al
    Accuracy of QuantiFERON-TB Gold-PLUS Test for the Diagnosis of Mycobacterium tuberculosis infection in Children.
    J Clin Microbiol. 2020 Mar 30. pii: JCM.00272-20. doi: 10.1128/JCM.00272.
    PubMed     Abstract available


  8. WHITE PL, Price JS, Posso R, Cutlan-Vaughan M, et al
    An evaluation of the performance of the IMMY sona Aspergillus Galactomannan Lateral flow assay when testing serum to aid in the diagnosis of invasive aspergillosis.
    J Clin Microbiol. 2020 Mar 18. pii: JCM.00053-20. doi: 10.1128/JCM.00053.
    PubMed     Abstract available


  9. THOMPSON TZ, McMullen AR
    Group A Streptococcus Testing in Pediatrics: The Move to Point of Care Molecular Testing.
    J Clin Microbiol. 2020 Mar 11. pii: JCM.01494-19. doi: 10.1128/JCM.01494.
    PubMed     Abstract available


  10. DURUKAN D, Read TRH, Bradshaw CS, Fairley CK, et al
    Pooling pharyngeal, anorectal and urogenital samples for screening asymptomatic men who have sex with men for Chlamydia trachomatis and Neisseria gonorrhoeae.
    J Clin Microbiol. 2020 Mar 4. pii: JCM.01969-19. doi: 10.1128/JCM.01969.
    PubMed     Abstract available


  11. GHORASHI SA, Heller J, Zhang Q, Sahibzada S, et al
    Differentiation of community-associated and livestock-associated methicillin-resistant Staphylococcus aureus isolates and identification of spa types using PCR and high-resolution melt curve analysis.
    J Clin Microbiol. 2020 Mar 4. pii: JCM.02088-19. doi: 10.1128/JCM.02088.
    PubMed     Abstract available


    February 2020
  12. MCADAM AJ
    The End of Coagulase-Negative Staphylococci? A Micro-Comic Strip.
    J Clin Microbiol. 2020;58.
    PubMed    


  13. HARRO JM, Shirtliff ME, Arnold W, Kofonow JM, et al
    Development of a Novel and Rapid Antibody-based Diagnostic for Chronic Staphylococcus aureus Infections Based on Biofilm Antigens.
    J Clin Microbiol. 2020 Feb 12. pii: JCM.01414-19. doi: 10.1128/JCM.01414.
    PubMed     Abstract available


  14. CHEN XL, Zheng H, Li WG, Zhong YH, et al
    Direct blood culturing of Candida spp. on solid medium was achieved by a rapid enrichment method with magnetic beads coated with rhMBL.
    J Clin Microbiol. 2020 Feb 12. pii: JCM.00057-20. doi: 10.1128/JCM.00057.
    PubMed     Abstract available


  15. DE MAERTELAERE E, Vandendriessche S, Verhasselt B, Coorevits L, et al
    Evaluation of QuantiFERON-TB(R) Gold Plus on LIAISON(R) XL in a low tuberculosis incidence setting.
    J Clin Microbiol. 2020 Feb 5. pii: JCM.00159-20. doi: 10.1128/JCM.00159.
    PubMed     Abstract available


  16. FRANCO SOTOMAYOR G, Rivera-Olivero IA, Leon-Benitez M, Uruchima-Campoverde SE, et al
    Fast, simple and cheap: the Kudoh-Ogawa swab method as an alternative to the Petroff-Lowenstein Jensen method for the culturing of Mycobacterium tuberculosis.
    J Clin Microbiol. 2020 Feb 5. pii: JCM.01424-19. doi: 10.1128/JCM.01424.
    PubMed     Abstract available


    January 2020
  17. GARGIS AS, Yoo BB, Lonsway DR, Anderson K, et al
    Difficult-to-Detect Staphylococcus aureus: mecA-positive Isolates Associated with Oxacillin and Cefoxitin False-Susceptible Results.
    J Clin Microbiol. 2020 Jan 29. pii: JCM.02038-19. doi: 10.1128/JCM.02038.
    PubMed     Abstract available


  18. DAVIS C, Wheat LJ, Myint T, Boulware DR, et al
    Efficacy of CSF beta-D-glucan diagnostic testing for fungal meningitis: a systemic review.
    J Clin Microbiol. 2020 Jan 29. pii: JCM.02094-19. doi: 10.1128/JCM.02094.
    PubMed     Abstract available


  19. MUSSER JM, Beres SB, Zhu L, Olsen RJ, et al
    Reduced in vitro susceptibility of Streptococcus pyogenes to beta-lactam antibiotics associated with mutations in the pbp2x gene is geographically widespread.
    J Clin Microbiol. 2020 Jan 29. pii: JCM.01993-19. doi: 10.1128/JCM.01993.
    PubMed     Abstract available


  20. WICKES BL
    Analysis of a Candida auris outbreak provides new insights into an emerging pathogen.
    J Clin Microbiol. 2020 Jan 29. pii: JCM.02083-19. doi: 10.1128/JCM.02083.
    PubMed     Abstract available


  21. WON D, Park JY, Kim HS, Park Y, et al
    Comparative results of QuantiFERON-TB Gold In-Tube and QuantiFERON-TB Gold Plus assays for tuberculosis diagnosis of clinical samples.
    J Clin Microbiol. 2020 Jan 22. pii: JCM.01854-19. doi: 10.1128/JCM.01854.
    PubMed     Abstract available


  22. O'CONNOR JA, Corcoran GD, O'Reilly B, O'Mahony J, et al
    MALDI-tof MS for the investigation of Mycobacterium tuberculosis complex outbreaks: a type dream?
    J Clin Microbiol. 2020 Jan 15. pii: JCM.02077-19. doi: 10.1128/JCM.02077.
    PubMed     Abstract available


  23. LAI G, Zeng C, Mo J, Song WD, et al
    Diagnostic value of galactomannan in bronchoalveolar lavage fluid for chronic respiratory disease with pulmonary aspergillosis.
    J Clin Microbiol. 2020 Jan 15. pii: JCM.01308-19. doi: 10.1128/JCM.01308.
    PubMed     Abstract available


    December 2019
  24. PRECIT MR, Yee R, Pandey U, Fahit M, et al
    Cerebrospinal Fluid Findings are Poor Predictors of Appropriate FilmArray Meningitis/Encephalitis Panel Utilization in Pediatric Patients.
    J Clin Microbiol. 2019 Dec 18. pii: JCM.01592-19. doi: 10.1128/JCM.01592.
    PubMed     Abstract available


  25. ZHU Y, O'Brien B, Leach L, Clark A, et al
    Laboratory Analysis of an Outbreak of Candida auris in New York from 2016 to 2018-Impact and Lessons Learned.
    J Clin Microbiol. 2019 Dec 18. pii: JCM.01503-19. doi: 10.1128/JCM.01503.
    PubMed     Abstract available


  26. BURNS JE, Graf EH
    Photo Quiz: A Mysterious Case of Neonatal Meningitis.
    J Clin Microbiol. 2019;57.
    PubMed    


    November 2019
  27. SCHWEBKE JR, Taylor SN, Ackerman R, Schlaberg R, et al
    Clinical validation of the Aptima Bacterial Vaginosis and Aptima Candida/Trichomonas Vaginitis Assays: results from a prospective multi-center clinical study.
    J Clin Microbiol. 2019 Nov 20. pii: JCM.01643-19. doi: 10.1128/JCM.01643.
    PubMed     Abstract available


  28. PHILLIPS TR, Fairley CK, Maddaford K, Danielewski J, et al
    Bacterial load of Chlamydia trachomatis in the posterior oropharynx, tonsillar fossae and saliva among gay and bisexual men with untreated oropharyngeal chlamydia.
    J Clin Microbiol. 2019 Nov 6. pii: JCM.01375-19. doi: 10.1128/JCM.01375.
    PubMed     Abstract available


  29. DUPIEUX C, Mouton W, Andre C, Vandenesch F, et al
    Performance of the revised version of an immunochromatographic assay for the detection of mecA- and mecC-mediated methicillin resistance in staphylococci.
    J Clin Microbiol. 2019 Nov 6. pii: JCM.01346-19. doi: 10.1128/JCM.01346.
    PubMed     Abstract available


    October 2019
  30. WEINRICK B
    Genotyping of Mycobacterium tuberculosis Rifampin Resistance Associated Mutations Using Data From Xpert(R) MTB/RIF Ultra Enables Large-Scale Tuberculosis Molecular Epidemiology Studies.
    J Clin Microbiol. 2019 Oct 23. pii: JCM.01504-19. doi: 10.1128/JCM.01504.
    PubMed     Abstract available


  31. AL-RAWAHI GN, Chorlton S, Dhaliwal S, Golding GR, et al
    Performance of the BD Phoenix Automated Microbiology System for Trimethoprim-Sulfamethoxazole Susceptibility Testing of Staphylococcus aureus.
    J Clin Microbiol. 2019 Oct 16. pii: JCM.00994-19. doi: 10.1128/JCM.00994.
    PubMed     Abstract available


  32. LISBOA VDC, Ribeiro-Alves M, Correa RDS, Lopes IR, et al
    The predominance of Th1 Immune Response in Pleural Effusion of Patients with Tuberculosis Among Other Exudative Etiologies.
    J Clin Microbiol. 2019 Oct 16. pii: JCM.00927-19. doi: 10.1128/JCM.00927.
    PubMed     Abstract available


  33. ALVAREZ A, Fernandez L, Gutierrez D, Iglesias B, et al
    Methicillin-resistant Staphylococcus aureus (MRSA) in hospitals: latest trends and treatments based on bacteriophages.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01006-19. doi: 10.1128/JCM.01006.
    PubMed     Abstract available


  34. MORRIS CP, Simner PJ
    Tailoring Antimicrobial Susceptibility Testing to Individual Species of Coagulase-Negative Staphylococci: Next up, Staphylococcus epidermidis.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01391-19. doi: 10.1128/JCM.01391.
    PubMed     Abstract available


  35. SULLIVAN MJ, Altman DR, Chacko KI, Ciferri B, et al
    A complete genome screening program of clinical methicillin-resistant Staphylococcus aureus isolates identifies the origin and progression of a neonatal intensive care unit outbreak.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01261-19. doi: 10.1128/JCM.01261.
    PubMed     Abstract available


    September 2019
  36. CAO Y, Parmar H, Simmons AM, Kale D, et al
    Automatic identification of individual rpoB gene mutations responsible for rifampin resistance in Mycobacterium tuberculosis using melting temperature signatures generated by the Xpert(R) MTB/RIF Ultra* assay.
    J Clin Microbiol. 2019 Sep 18. pii: JCM.00907-19. doi: 10.1128/JCM.00907.
    PubMed     Abstract available


  37. KWEON OJ, Lim YK, Kim HR, Kim TH, et al
    Evaluation of STANDARD E TB-Feron ELISA for the diagnosis of latent tuberculosis infection in healthcare workers.
    J Clin Microbiol. 2019 Sep 18. pii: JCM.01347-19. doi: 10.1128/JCM.01347.
    PubMed     Abstract available


  38. SULE P, Tilvawala R, Mustapha T, Hassounah H, et al
    Rapid Tuberculosis Diagnosis Using Reporter Enzyme Fluorescence (REF).
    J Clin Microbiol. 2019 Sep 11. pii: JCM.01462-19. doi: 10.1128/JCM.01462.
    PubMed     Abstract available


  39. TENOVER FC, Tickler IA, Le VM, Dewell S, et al
    Updating Molecular Diagnostics for Detecting Methicillin-susceptible and Methicillin-resistant Staphylococcus aureus in Blood Culture Bottles.
    J Clin Microbiol. 2019 Sep 4. pii: JCM.01195-19. doi: 10.1128/JCM.01195.
    PubMed     Abstract available


    August 2019
  40. NACCACHE SN, Callan K, Burnham CA, Wallace MA, et al
    Evaluation of Oxacillin and Cefoxitin Disk Diffusion and Microbroth Dilution Methods for Detecting mecA-mediated beta-lactam Resistance in Contemporary Staphylococcus epidermidis Isolates.
    J Clin Microbiol. 2019 Aug 28. pii: JCM.00961-19. doi: 10.1128/JCM.00961.
    PubMed     Abstract available


  41. BERRY GJ, Zhang F, Manji R, Juretschko S, et al
    Comparison of the Panther Fusion and BD MAX GBS Assays for Detection of Group B Streptococcus in Prenatal Screening Specimens.
    J Clin Microbiol. 2019 Aug 28. pii: JCM.01034-19. doi: 10.1128/JCM.01034.
    PubMed     Abstract available


  42. VENKATAPPA TK, Punnoose R, Katz DJ, Higgins MP, et al
    Comparing QuantiFERON-TB Gold Plus with other tests to diagnose Mycobacterium tuberculosis infection.
    J Clin Microbiol. 2019 Aug 28. pii: JCM.00985-19. doi: 10.1128/JCM.00985.
    PubMed     Abstract available


  43. VAN TT, Mata K, Dien Bard J
    Automated Detection of Streptococcus pyogenes pharyngitis using Colorex Strep A CHROMagar and WASPLab Artificial Intelligence Chromogenic Detection Module Software.
    J Clin Microbiol. 2019 Aug 21. pii: JCM.00811-19. doi: 10.1128/JCM.00811.
    PubMed     Abstract available


  44. CANVER MC, Tekle T, Compton ST, Callan K, et al
    Performance of Five Commercial Identification Platforms for the Identification of Staphylococcus delphini.
    J Clin Microbiol. 2019 Aug 14. pii: JCM.00721-19. doi: 10.1128/JCM.00721.
    PubMed     Abstract available


  45. NG KCS, Supply P, Cobelens FGJ, Gaudin C, et al
    How well do routine molecular diagnostics detect rifampicin heteroresistance in Mycobacterium tuberculosis?
    J Clin Microbiol. 2019 Aug 14. pii: JCM.00717-19. doi: 10.1128/JCM.00717.
    PubMed     Abstract available


  46. AMBARAGHASSI G, Dufresne PJ, Dufresne SF, Vallieres E, et al
    Identification of Candida auris using the updated 8.01 VITEK(R)2 yeast identification system: a multi-laboratory evaluation study.
    J Clin Microbiol. 2019 Aug 14. pii: JCM.00884-19. doi: 10.1128/JCM.00884.
    PubMed     Abstract available


  47. LEACH L, Russell A, Zhu Y, Chaturvedi S, et al
    A rapid and automated sample-to-result Candida auris real-time PCR assay for high-throughput testing of surveillance samples with BD MAX open system.
    J Clin Microbiol. 2019 Aug 7. pii: JCM.00630-19. doi: 10.1128/JCM.00630.
    PubMed     Abstract available


  48. LOMBARDI G, Pellegrino MT, Denicolo A, Corsini I, et al
    Quantiferon-TB performs better in children, including infants, than in adults with active tuberculosis: a multicentre study.
    J Clin Microbiol. 2019 Aug 7. pii: JCM.01048-19. doi: 10.1128/JCM.01048.
    PubMed     Abstract available


    July 2019
  49. GAO X, Guo X, Li M, Jia H, et al
    Interleukin 8 (IL-8) and Pentaxin (CRP) as Potential New Biomarkers of Bovine Tuberculosis.
    J Clin Microbiol. 2019 Jul 24. pii: JCM.00274-19. doi: 10.1128/JCM.00274.
    PubMed     Abstract available


  50. KIM SJ, Jeong YJ, Kim JH, Yoon YK, et al
    Development for clinical use of a multiplexed immunoassay using sputum samples for Streptococcus pneumoniae: A non-culture-based approach for serotype-specific detection.
    J Clin Microbiol. 2019 Jul 24. pii: JCM.01782-18. doi: 10.1128/JCM.01782.
    PubMed     Abstract available


  51. KHAN A, Rivas LM, Spencer M, Martinez R, et al
    A Multicenter Study to Evaluate Ceftaroline Breakpoints: Performance in An Area with High Prevalence of Methicillin-Resistant Staphylococcus aureus ST5 Lineage.
    J Clin Microbiol. 2019 Jul 17. pii: JCM.00798-19. doi: 10.1128/JCM.00798.
    PubMed     Abstract available


  52. WANG Q, Kontoyiannis DP, Li R, Chen W, et al
    A novel broad allele-specific Taqman real-time PCR method to detect triazole-resistant strains of Aspergillus fumigatus, even when in very low percentage of the triazole-resistant and -susceptible strain mixture.
    J Clin Microbiol. 2019 Jul 17. pii: JCM.00604-19. doi: 10.1128/JCM.00604.
    PubMed     Abstract available


  53. MELDAU R, Randall P, Pooran A, Limberis J, et al
    Same day tools, including Xpert Ultra and unstimulated IFN-gamma, for the rapid diagnosis of pleural tuberculosis - a prospective observational study.
    J Clin Microbiol. 2019 Jul 3. pii: JCM.00614-19. doi: 10.1128/JCM.00614.
    PubMed     Abstract available


  54. REISS-MANDEL A, Rubin C, Maayan-Mezger A, Novikov I, et al
    Patterns and predictors of Staphylococcus aureus carriage during the first year of life; a longitudinal study.
    J Clin Microbiol. 2019 Jul 3. pii: JCM.00282-19. doi: 10.1128/JCM.00282.
    PubMed     Abstract available


    June 2019
  55. ESTRADA AA, Gottschalk M, Rossow S, Rendahl A, et al
    Serotype and Genotype (Multilocus Sequence Type) of Streptococcus suis Isolates from the United States Serve as Predictors of Pathotype.
    J Clin Microbiol. 2019 Jun 26. pii: JCM.00377-19. doi: 10.1128/JCM.00377.
    PubMed     Abstract available


  56. STUCKY HUNTER E, Richardson MD, Denning DW
    Evaluation of LD Bio Aspergillus ICT lateral flow assay for IgG and IgM antibody detection in chronic pulmonary aspergillosis.
    J Clin Microbiol. 2019 Jun 19. pii: JCM.00538-19. doi: 10.1128/JCM.00538.
    PubMed     Abstract available


  57. DURANT TJS, Merwede J, Reynolds J, Peaper DR, et al
    Optimization of Turnaround Time for Group A Streptococcus PCR.
    J Clin Microbiol. 2019 Jun 19. pii: JCM.00619-19. doi: 10.1128/JCM.00619.
    PubMed     Abstract available


  58. ALCAIDE F, Trastoy R, Moure R, Gonzalez-Bardanca M, et al
    <<Multiplex Real time PCR-shortTUB assay for detection of the Mycobacterium tuberculosis complex in smear-negative clinical samples with low mycobacterial loads>>.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00733-19. doi: 10.1128/JCM.00733.
    PubMed     Abstract available


  59. SIDDIQI OK, Birbeck GL, Ghebremichael M, Mubanga E, et al
    A Prospective Cohort Study on the Performance of CSF Xpert MTB/RIF, CSF and Urine LAM Lateral Flow Assay for the Diagnosis of Tuberculous Meningitis in Zambia.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00652-19. doi: 10.1128/JCM.00652.
    PubMed     Abstract available


  60. TAM KK, Leung KS, Siu GK, Chang KC, et al
    Direct detection of pyrazinamide resistance of Mycobacterium tuberculosis using pncA PCR Sequencing.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00145-19. doi: 10.1128/JCM.00145.
    PubMed     Abstract available


  61. VAN LEEUWEN LM, Versteegen P, Zaharie SD, van Elsland SL, et al
    Bacterial genotyping of CNS tuberculosis in South Africa: heterogenic M. tuberculosis infection and predominance of lineage 4.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00415-19. doi: 10.1128/JCM.00415.
    PubMed     Abstract available


  62. SALIMNIA H, Robinson-Dunn B, Gundel A, Campbell A, et al
    Suggested modifications to improve sensitivity and specificity of the 2010 CDC-recommended routine Streptococcus agalactiae screening culture for pregnant women.
    J Clin Microbiol. 2019 Jun 5. pii: JCM.00446-19. doi: 10.1128/JCM.00446.
    PubMed     Abstract available


    May 2019
  63. CARROLL KC
    Streptococcus Sleuth and Pioneering Woman of Science: A Short Biography of Rebecca Lancefield.
    J Clin Microbiol. 2019 May 29. pii: JCM.00728-19. doi: 10.1128/JCM.00728.
    PubMed     Abstract available


  64. O'DEA M, Sahibzada S, Jordan D, Laird T, et al
    Genomic, antimicrobial resistance and public health insights into Enterococcus spp. from Australian chickens.
    J Clin Microbiol. 2019 May 22. pii: JCM.00319-19. doi: 10.1128/JCM.00319.
    PubMed     Abstract available


  65. HUMPHRIES RM
    The new, new daptomycin breakpoint for Enterococcus spp.
    J Clin Microbiol. 2019 May 15. pii: JCM.00600-19. doi: 10.1128/JCM.00600.
    PubMed     Abstract available


  66. SANOUSSI CN, de Jong BC, Affolabi D, Meehan CJ, et al
    Storage of sputum in cetylpyridinium chloride, OMNIgeneSPUTUM and ethanol is compatible with molecular tuberculosis diagnostic testing.
    J Clin Microbiol. 2019 May 15. pii: JCM.00275-19. doi: 10.1128/JCM.00275.
    PubMed     Abstract available


  67. LIMA A, Widen R, Vestal G, Uy D, et al
    A TaqMan Probe-based Real-Time PCR Assay for the Rapid Identification of the Emerging Multidrug-Resistant Candida auris on the BD MAX System.
    J Clin Microbiol. 2019 May 8. pii: JCM.01604-18. doi: 10.1128/JCM.01604.
    PubMed     Abstract available


  68. SHITIKOV E, Vyazovaya A, Malakhova M, Guliaev A, et al
    Simple assay to detect Central Asia Outbreak clade of Mycobacterium tuberculosis Beijing genotype.
    J Clin Microbiol. 2019 May 1. pii: JCM.00215-19. doi: 10.1128/JCM.00215.
    PubMed     Abstract available


    April 2019
  69. CHO SY, Lee DG, Kim WB, Chun HS, et al
    Epidemiology and antifungal susceptibility profile of Aspergillus species: comparison between environmental and clinical isolates from patients with hematologic malignancies.
    J Clin Microbiol. 2019 Apr 24. pii: JCM.02023-18. doi: 10.1128/JCM.02023.
    PubMed     Abstract available


  70. MTAFYA B, Sabiiti W, Sabi I, John J, et al
    Molecular bacterial load assay (MBLA) concurs with culture on the NaOH-induced Mycobacterium tuberculosis loss of viability.
    J Clin Microbiol. 2019 Apr 24. pii: JCM.01992-18. doi: 10.1128/JCM.01992.
    PubMed     Abstract available


  71. DICHTL K, Seybold U, Ormanns S, Horns H, et al
    Evaluation of a novel Aspergillus Antigen ELISA.
    J Clin Microbiol. 2019 Apr 24. pii: JCM.00136-19. doi: 10.1128/JCM.00136.
    PubMed     Abstract available


  72. UPRETY P, Cardenas AM
    Extragenital Screening is Essential for Comprehensive Detection of Chlamydia trachomatis and Neisseria gonorrhoeae in the Pediatric Population.
    J Clin Microbiol. 2019 Apr 17. pii: JCM.00335-19. doi: 10.1128/JCM.00335.
    PubMed     Abstract available


  73. MACLEAN E, Sulis G, Denkinger CM, Johnston JC, et al
    Diagnostic accuracy of stool Xpert MTB/RIF for the detection of pulmonary tuberculosis in children: a systematic review and meta-analysis.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.02057-18. doi: 10.1128/JCM.02057.
    PubMed     Abstract available


  74. CHIN JH, Musubire AK, Morgan N, Pellinen J, et al
    Xpert MTB/RIF Ultra for the Detection of Mycobacterium tuberculosis in Cerebrospinal Fluid.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.00249-19. doi: 10.1128/JCM.00249.
    PubMed     Abstract available


  75. PORMOHAMMAD A, Nasiri MJ, McHugh TD, Riahi SM, et al
    A systematic review and meta-analysis of the diagnostic accuracy of nucleic acid amplification tests in cerebrospinal fluid for tuberculous meningitis.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.01113-18. doi: 10.1128/JCM.01113.
    PubMed     Abstract available


  76. JONES RC, Harris LG, Morgan S, Ruddy MC, et al
    Phylogenetic analysis of Mycobacterium tuberculosis strains in Wales using core genome MLST to analyse whole genome sequencing data.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.02025-18. doi: 10.1128/JCM.02025.
    PubMed     Abstract available


  77. WILEMAN TM, Weinert LA, Howell KJ, Wang J, et al
    Pathotyping the Zoonotic Pathogen Streptococcus suis: Novel Genetic Markers to Differentiate Invasive Disease-Associated Isolates from Non-Disease Associated Isolates from England and Wales.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.01712-18. doi: 10.1128/JCM.01712.
    PubMed     Abstract available


  78. SHIN JH, Pride DT
    Comparison of Three Nucleic Acid Amplification Tests (NAATs) and Culture for Detection of Group B Streptococcus (GBS) from Enrichment Broth.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.01958-18. doi: 10.1128/JCM.01958.
    PubMed     Abstract available


  79. YAMAGUCHI T, Kawahara R, Katsukawa C, Kanki M, et al
    Correction for Yamaguchi et al., "Foodborne Outbreak of Group G Streptococcal Pharyngitis in a School Dormitory in Osaka, Japan".
    J Clin Microbiol. 2019;57.
    PubMed    


    March 2019
  80. CHENG MP, Lawandi A, Lee TC, Dufresne PJ, et al
    Triazole Antifungal Susceptibility Patterns among Aspergillus species in Quebec, Canada.
    J Clin Microbiol. 2019 Mar 27. pii: JCM.00404-19. doi: 10.1128/JCM.00404.
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  161. YAMAGUCHI T, Kawahara R, Katsukawa C, Kanki M, et al
    Food-Borne Outbreak of Group G Streptococcal Pharyngitis in a School Dormitory in Osaka, Japan.
    J Clin Microbiol. 2018 Feb 28. pii: JCM.01884-17. doi: 10.1128/JCM.01884.
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  162. CHANG B, Morita M, Lee KI, Ohnishi M, et al
    Whole-genome sequence analysis of Streptococcus pneumoniae strains that cause hospital-acquired pneumonia infections.
    J Clin Microbiol. 2018 Feb 14. pii: JCM.01822-17. doi: 10.1128/JCM.01822.
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  163. FALCI DR, Pasqualotto AC, Nucci M, Monteiro AA, et al
    Low sensitivity of Lateral Flow Device-Aspergillus in patients with probable and proven aspergillosis: results from a multicentre evaluation.
    J Clin Microbiol. 2018 Feb 14. pii: JCM.01864-17. doi: 10.1128/JCM.01864.
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  164. BARR DA, Kerkhoff AD, Schutz C, Ward AM, et al
    HIV-associated M. tuberculosis blood stream infection is under-diagnosed by a single blood culture.
    J Clin Microbiol. 2018 Feb 14. pii: JCM.01914-17. doi: 10.1128/JCM.01914.
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  165. LIESMAN RM, Strasburg AP, Heitman AK, Theel ES, et al
    Evaluation of a Commercial Multiplex Molecular Panel For the Diagnosis of Infectious Meningitis and Encephalitis.
    J Clin Microbiol. 2018 Feb 7. pii: JCM.01927-17. doi: 10.1128/JCM.01927.
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  166. CASTANHEIRA M
    Fungemia Surveillance in Denmark Demonstrates Emergence of Candida non-albicans, Higher Antifungal Usage and Resistance Rates When Compared to Other Nations.
    J Clin Microbiol. 2018 Feb 7. pii: JCM.01907-17. doi: 10.1128/JCM.01907.
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  167. LAINHART W, Yarbrough ML, Burnham CA
    Closing the Brief Case: Staphylococcus intermedius Group-Look What the Dog Dragged In.
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    PubMed    


  168. LAINHART W, Yarbrough ML, Burnham CA
    The Brief Case: Staphylococcus intermedius Group-Look What the Dog Dragged In.
    J Clin Microbiol. 2018;56.
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    January 2018
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    Rapid, Accurate Identification of Candida auris by Using a Novel MALDI-TOF Database (Library).
    J Clin Microbiol. 2018 Jan 24. pii: JCM.01700-17. doi: 10.1128/JCM.01700.
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  170. BARD JD, Alby K
    Point-Counterpoint: Meningitis/encephalitis syndromic testing in the Clinical Laboratory.
    J Clin Microbiol. 2018 Jan 17. pii: JCM.00018-18. doi: 10.1128/JCM.00018.
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  171. YARBROUGH ML, Lainhart W, Burnham CA
    Epidemiology, Clinical Characteristics, and Antimicrobial Susceptibility Profiles of Human Clinical Isolates of Staphylococcus intermedius Group.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01788-17. doi: 10.1128/JCM.01788.
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  172. CHURCH DL, Lloyd T, Larios O, Gregson DB, et al
    Evaluation of Simplexa Group A Strep Direct Kit compared to Hologic(R) Group A streptococcal direct assay for detection of Group A Streptococcus (GAS) in throat swabs.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01666-17. doi: 10.1128/JCM.01666.
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  173. LINGER Y, Knickerbocker C, Sipes D, Golova J, et al
    Genotyping Multi-Drug Resistant M. tuberculosis from Primary Sputum and Decontaminated Sediment with an Integrated Microfluidic Amplification Microarray.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01652-17. doi: 10.1128/JCM.01652.
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  174. BERRY GJ, Miller CR, Moreno Prats M, Marquez C, et al
    Comparison of the Alere i and BD Veritor in the detection of Group A Streptococcus and the hypothetical impact of results on antibiotic utilization.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01310-17. doi: 10.1128/JCM.01310.
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  175. THERON G, Venter R, Smith L, Esmail A, et al
    False positive Xpert MTB/RIF results in re-tested patients with previous tuberculosis: frequency, profile, and prospective clinical outcomes.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01696-17. doi: 10.1128/JCM.01696.
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    December 2017
  176. RAVEN KE, Gouliouris T, Parkhill J, Peacock SJ, et al
    Genome-based analysis of Enterococcus faecium bacteremia associated with recurrent and mixed strain infection.
    J Clin Microbiol. 2017 Dec 20. pii: JCM.01520-17. doi: 10.1128/JCM.01520.
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  177. WAGNER K, Springer B, Pires VP, Keller PM, et al
    Pathogen identification by multiplex Lightmix(R) RT-PCR in patients with meningitis and culture-negative cerebrospinal fluid.
    J Clin Microbiol. 2017 Dec 13. pii: JCM.01492-17. doi: 10.1128/JCM.01492.
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  178. HAVLICEK J, Dachsel B, Slickers P, Andres S, et al
    Rapid Microarray-based Detection of Rifampicin-, Isoniazid- and Fluoroquinolone Resistance in Mycobacterium tuberculosis using a Single Cartridge.
    J Clin Microbiol. 2017 Dec 6. pii: JCM.01249-17. doi: 10.1128/JCM.01249.
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    November 2017
  179. HUSE HK, Miller SA, Chandrasekaran S, Hindler JA, et al
    Clinical and Laboratory Standards Institute (CLSI) Evaluation of Oxacillin and Cefoxitin Disk Diffusion and Minimum Inhibitory Concentration Breakpoints for Detection of mecA-mediated Oxacillin Resistance in Staphylococcus schleiferi.
    J Clin Microbiol. 2017 Nov 29. pii: JCM.01653-17. doi: 10.1128/JCM.01653.
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  180. SPRINGER J, White PL, Kessel J, Wieters I, et al
    A Comparison of Aspergillus and Mucorales PCR Testing of Different BAL Fractions from Patients with Suspected Invasive Pulmonary Fungal Disease.
    J Clin Microbiol. 2017 Nov 29. pii: JCM.01655-17. doi: 10.1128/JCM.01655.
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  181. LEACH L, Zhu Y, Chaturvedi S
    Development and validation of a real-time PCR assay for rapid detection of Candida auris from surveillance samples.
    J Clin Microbiol. 2017 Nov 29. pii: JCM.01223-17. doi: 10.1128/JCM.01223.
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  182. SPIVAK ES, Hanson KE
    Candida auris: An Emerging Fungal Pathogen.
    J Clin Microbiol. 2017 Nov 22. pii: JCM.01588-17. doi: 10.1128/JCM.01588.
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  183. JAJOU R, de Neeling A, Rasmussen EM, Norman A, et al
    A predominant VNTR cluster of Mycobacterium tuberculosis isolates among asylum seekers in the Netherlands and Denmark deciphered by whole genome sequencing.
    J Clin Microbiol. 2017 Nov 22. pii: JCM.01100-17. doi: 10.1128/JCM.01100.
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  184. JAJOU R, Kamst M, van Hunen R, de Zwaan CC, et al
    The occurrence and nature of double alleles in VNTR patterns of more than 8,000 Mycobacterium tuberculosis complex isolates in The Netherlands.
    J Clin Microbiol. 2017 Nov 15. pii: JCM.00761-17. doi: 10.1128/JCM.00761.
    PubMed     Abstract available


  185. LOMBARDI G, Petrucci R, Corsini I, Bacchi Reggiani ML, et al
    Quantitative analysis of interferon-gamma release assay response in children with latent and active tuberculosis.
    J Clin Microbiol. 2017 Nov 15. pii: JCM.01360-17. doi: 10.1128/JCM.01360.
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  186. MOKROUSOV I, Chernyaeva E, Vyazovaya A, Skiba Y, et al
    A rapid assay for detection of the epidemiologically important Central Asian/Russian strain of the Mycobacterium tuberculosis Beijing genotype.
    J Clin Microbiol. 2017 Nov 15. pii: JCM.01551-17. doi: 10.1128/JCM.01551.
    PubMed     Abstract available


  187. LIANG B, Tan Y, Li Z, Tian X, et al
    Highly Sensitive Detection of Isoniazid Heteroresistance in Mycobacterium tuberculosis by DeepMelt Assay.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01239-17. doi: 10.1128/JCM.01239.
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  188. WHITE PL, Parr C, Barnes RA
    Predicting invasive aspergillosis in haematology patients by combining clinical and genetic risk factors with early diagnostic biomarkers.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01122-17. doi: 10.1128/JCM.01122.
    PubMed     Abstract available


  189. NDLANGISA K, du Plessis M, Allam M, Wolter N, et al
    Invasive disease caused simultaneously by dual serotypes of Streptococcus pneumoniae.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01149-17. doi: 10.1128/JCM.01149.
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  190. YARBROUGH ML, Warren DK, Allen K, Burkholder D, et al
    Multicenter evaluation of the Xpert MRSA NxG Assay for detection of methicillin resistant Staphylococcus aureus in nasal swabs.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01381-17. doi: 10.1128/JCM.01381.
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  191. KANJILAL S, Sater MRA, Thayer M, Lagoudas GK, et al
    Trends in antibiotic susceptibility in Staphylococcus aureus in Boston, Massachusetts, 2000-2014.
    J Clin Microbiol. 2017 Nov 1. pii: JCM.01160-17. doi: 10.1128/JCM.01160.
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  192. YARBROUGH ML, Hamad Y, Burnham CA, George IA, et al
    Closing the Brief Case: Bacteremia and Vertebral Osteomyelitis Due to Staphylococcus schleiferi.
    J Clin Microbiol. 2017;55:3309-3310.
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    The Brief Case: Bacteremia and Vertebral Osteomyelitis Due to Staphylococcus schleiferi.
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    October 2017
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    Prediction of Local Transmission of Mycobacterium tuberculosis Isolates of a Predominantly Beijing Lineage Using a Variable-Number Tandem Repeat (VNTR) Typing Method Incorporating a Consensus Set of Hypervariable Loci.
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    PubMed     Abstract available


  195. AO W, Klonoski J, Berlinghoff E, Jensen J, et al
    Rapid Detection and Differentiation of Clinically Relevant Candida Species Simultaneously from Blood Culture Using A Novel Signal Amplification Approach.
    J Clin Microbiol. 2017 Oct 18. pii: JCM.00982-17. doi: 10.1128/JCM.00982.
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  196. KRIEGESKORTE A, Idelevich EA, Schlattmann A, Layer F, et al
    Comparison of Different Phenotypic Approaches to Screen and Detect mecC-Harboring Methicillin-Resistant Staphylococcus aureus.
    J Clin Microbiol. 2017 Oct 4. pii: JCM.00826-17. doi: 10.1128/JCM.00826.
    PubMed     Abstract available


  197. PRASIDTHRATHSINT K, Lewis J, Couturier MR
    Closing the Brief Case: Angiostrongylus cantonensis Eosinophilic Meningitis in a Returned Traveler.
    J Clin Microbiol. 2017;55:3147-3148.
    PubMed    


  198. PRASIDTHRATHSINT K, Lewis J, Couturier MR
    The Brief Case: Angiostrongylus cantonensis Eosinophilic Meningitis in a Returned Traveler.
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    September 2017
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    Genetic mimetics of Mycobacterium tuberculosis and methicillin resistant Staphylococcus aureus as verification standards for molecular diagnostics.
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  200. KOLENDA C, Dupieux C, Decousser JW, Larsen AR, et al
    Comparison of automated antimicrobial susceptibility testing systems to detect mecC-positive methicillin-resistant Staphylococcus aureus.
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  201. WALTERS E, Demers AM, van der Zalm MM, Whitelaw A, et al
    Stool culture for the diagnosis of pulmonary tuberculosis in children.
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  202. LOCKHART SR, Jackson BR, Vallabhaneni S, Ostrosky-Zeichner L, et al
    Thinking beyond the common Candida species: Need for speciation of Candida due to the emergence of multidrug resistant Candida auris.
    J Clin Microbiol. 2017 Sep 13. pii: JCM.01355-17. doi: 10.1128/JCM.01355.
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  203. MUSTAZZOLU A, Iacobino A, Giannoni F, Piersimoni C, et al
    Improved Bactec MGIT 960 Pyrazinamide Test Decreases Detection of False Mycobacterium tuberculosis Pyrazinamide Resistance.
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  204. ROSENTHAL A, Gabrielian A, Engle E, Hurt DE, et al
    The TB Portals: An open-access, web-based platform for global drug-resistant tuberculosis data sharing and analysis.
    J Clin Microbiol. 2017 Sep 13. pii: JCM.01013-17. doi: 10.1128/JCM.01013.
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  205. ORTIZ DA, Loeffelholz MJ
    Evaluation of the Lumipulse(R) G TP-N Chemiluminescent Immunoassay as a Syphilis Screening Test.
    J Clin Microbiol. 2017 Sep 6. pii: JCM.00966-17. doi: 10.1128/JCM.00966.
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    August 2017
  206. LE ROY C, Pereyre S, Henin N, Bebear C, et al
    French prospective clinical evaluation of the Aptima(R) Mycoplasma genitalium assay (CE-IVD) and macrolide resistance detection using three distinct assays.
    J Clin Microbiol. 2017 Aug 9. pii: JCM.00579-17. doi: 10.1128/JCM.00579.
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  207. GHEBREMEDHIN M, Heitkamp R, Yesupriya S, Clay B, et al
    Accurate and Rapid Differentiation of Acinetobacter baumannii Strains by Raman Spectroscopy: a Comparative Study.
    J Clin Microbiol. 2017;55:2480-2490.
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  208. KOZYREVA VK, Truong CL, Greninger AL, Crandall J, et al
    Validation and Implementation of Clinical Laboratory Improvements Act-Compliant Whole-Genome Sequencing in the Public Health Microbiology Laboratory.
    J Clin Microbiol. 2017;55:2502-2520.
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  209. FRASER M, Borman AM, Johnson EM
    Rapid and Robust Identification of the Agents of Black-Grain Mycetoma by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.
    J Clin Microbiol. 2017;55:2521-2528.
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  210. DUBBELS M, Granger D, Theel ES
    Low Cryptococcus Antigen Titers as Determined by Lateral Flow Assay Should Be Interpreted Cautiously in Patients without Prior Diagnosis of Cryptococcal Infection.
    J Clin Microbiol. 2017;55:2472-2479.
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  211. SNYDER JL, Giese H, Bandoski-Gralinski C, Townsend J, et al
    T2 Magnetic Resonance Assay-Based Direct Detection of Three Lyme Disease-Related Borrelia Species in Whole-Blood Samples.
    J Clin Microbiol. 2017;55:2453-2461.
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  212. KOZEL TR, Burnham-Marusich AR
    Point-of-Care Testing for Infectious Diseases: Past, Present, and Future.
    J Clin Microbiol. 2017;55:2313-2320.
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  213. BIDET P, Tran Quang V, Yagusky P, Birgy A, et al
    Investigation of Kingella kingae Invasive Infection Outbreaks in Day Care Facilities: Assessment of a Rapid Genotyping Tool Targeting the DNA Uptake Sequence.
    J Clin Microbiol. 2017;55:2422-2430.
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  214. JACOBS MR, Mazzulli T, Hazen KC, Good CE, et al
    Multicenter Clinical Evaluation of BacT/Alert Virtuo Blood Culture System.
    J Clin Microbiol. 2017;55:2413-2421.
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  215. DE ALMEIDA JN JR, Favero Gimenes VM, Francisco EC, Machado Siqueira LP, et al
    Evaluating and Improving Vitek MS for Identification of Clinically Relevant Species of Trichosporon and the Closely Related Genera Cutaneotrichosporon and Apiotrichum.
    J Clin Microbiol. 2017;55:2439-2444.
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  216. BOSCH T, Lutgens SPM, Hermans MHA, Wever PC, et al
    Outbreak of NDM-1-Producing Klebsiella pneumoniae in a Dutch Hospital, with Interspecies Transfer of the Resistance Plasmid and Unexpected Occurrence in Unrelated Health Care Centers.
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  217. STREET TL, Sanderson ND, Atkins BL, Brent AJ, et al
    Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid by Metagenomic Sequencing.
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    July 2017
  218. PATEL R, Karon BS
    Advances Afoot in Microbiology.
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  219. ESAIASSEN E, Hjerde E, Cavanagh JP, Simonsen GS, et al
    Bifidobacterium Bacteremia: Clinical Characteristics and a Genomic Approach To Assess Pathogenicity.
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  220. MARSCHAL M, Bachmaier J, Autenrieth I, Oberhettinger P, et al
    Evaluation of the Accelerate Pheno System for Fast Identification and Antimicrobial Susceptibility Testing from Positive Blood Cultures in Bloodstream Infections Caused by Gram-Negative Pathogens.
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  221. EDWARDS BD, Greysson-Wong J, Somayaji R, Waddell B, et al
    Prevalence and Outcomes of Achromobacter Species Infections in Adults with Cystic Fibrosis: a North American Cohort Study.
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    June 2017
  222. RAMOS JT, Villar S, Bouza E, Bergon-Sendin E, et al
    Performance of a Quantitative PCR-Based Assay and Beta-D-Glucan Detection for the Diagnosis of Invasive Candidiasis in Very Low Birth Weight Preterm Neonatal Patients (CANDINEO Study).
    J Clin Microbiol. 2017 Jun 28. pii: JCM.00496-17. doi: 10.1128/JCM.00496.
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    May 2017
  223. BECKMAN E, Saracino I, Fiorini G, Clark C, et al
    A Novel stool PCR Test for Helicobacter pylori may Predict Clarithromycin Resistance and Patient Eradication at a High Rate.
    J Clin Microbiol. 2017 May 17. pii: JCM.00506-17. doi: 10.1128/JCM.00506.
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  224. MOORE NM, Canton R, Carretto E, Peterson LR, et al
    Rapid Identification of Five Classes of Carbapenem-Resistance Genes Directly from Rectal Swabs using the Xpert(R) Carba-R Assay.
    J Clin Microbiol. 2017 May 17. pii: JCM.00137-17. doi: 10.1128/JCM.00137.
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