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Articles published in J Clin Microbiol

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Single Articles


    August 2019
  1. CANVER MC, Tekle T, Compton ST, Callan K, et al
    Performance of Five Commercial Identification Platforms for the Identification of Staphylococcus delphini.
    J Clin Microbiol. 2019 Aug 14. pii: JCM.00721-19. doi: 10.1128/JCM.00721.
    PubMed     Text format     Abstract available


  2. NG KCS, Supply P, Cobelens FGJ, Gaudin C, et al
    How well do routine molecular diagnostics detect rifampicin heteroresistance in Mycobacterium tuberculosis?
    J Clin Microbiol. 2019 Aug 14. pii: JCM.00717-19. doi: 10.1128/JCM.00717.
    PubMed     Text format     Abstract available


  3. AMBARAGHASSI G, Dufresne PJ, Dufresne SF, Vallieres E, et al
    Identification of Candida auris using the updated 8.01 VITEK(R)2 yeast identification system: a multi-laboratory evaluation study.
    J Clin Microbiol. 2019 Aug 14. pii: JCM.00884-19. doi: 10.1128/JCM.00884.
    PubMed     Text format     Abstract available


  4. LEACH L, Russell A, Zhu Y, Chaturvedi S, et al
    A rapid and automated sample-to-result Candida auris real-time PCR assay for high-throughput testing of surveillance samples with BD MAX open system.
    J Clin Microbiol. 2019 Aug 7. pii: JCM.00630-19. doi: 10.1128/JCM.00630.
    PubMed     Text format     Abstract available


  5. LOMBARDI G, Pellegrino MT, Denicolo A, Corsini I, et al
    Quantiferon-TB performs better in children, including infants, than in adults with active tuberculosis: a multicentre study.
    J Clin Microbiol. 2019 Aug 7. pii: JCM.01048-19. doi: 10.1128/JCM.01048.
    PubMed     Text format     Abstract available


    July 2019
  6. GAO X, Guo X, Li M, Jia H, et al
    Interleukin 8 (IL-8) and Pentaxin (CRP) as Potential New Biomarkers of Bovine Tuberculosis.
    J Clin Microbiol. 2019 Jul 24. pii: JCM.00274-19. doi: 10.1128/JCM.00274.
    PubMed     Text format     Abstract available


  7. KIM SJ, Jeong YJ, Kim JH, Yoon YK, et al
    Development for clinical use of a multiplexed immunoassay using sputum samples for Streptococcus pneumoniae: A non-culture-based approach for serotype-specific detection.
    J Clin Microbiol. 2019 Jul 24. pii: JCM.01782-18. doi: 10.1128/JCM.01782.
    PubMed     Text format     Abstract available


  8. KHAN A, Rivas LM, Spencer M, Martinez R, et al
    A Multicenter Study to Evaluate Ceftaroline Breakpoints: Performance in An Area with High Prevalence of Methicillin-Resistant Staphylococcus aureus ST5 Lineage.
    J Clin Microbiol. 2019 Jul 17. pii: JCM.00798-19. doi: 10.1128/JCM.00798.
    PubMed     Text format     Abstract available


  9. WANG Q, Kontoyiannis DP, Li R, Chen W, et al
    A novel broad allele-specific Taqman real-time PCR method to detect triazole-resistant strains of Aspergillus fumigatus, even when in very low percentage of the triazole-resistant and -susceptible strain mixture.
    J Clin Microbiol. 2019 Jul 17. pii: JCM.00604-19. doi: 10.1128/JCM.00604.
    PubMed     Text format     Abstract available


  10. MELDAU R, Randall P, Pooran A, Limberis J, et al
    Same day tools, including Xpert Ultra and unstimulated IFN-gamma, for the rapid diagnosis of pleural tuberculosis - a prospective observational study.
    J Clin Microbiol. 2019 Jul 3. pii: JCM.00614-19. doi: 10.1128/JCM.00614.
    PubMed     Text format     Abstract available


  11. REISS-MANDEL A, Rubin C, Maayan-Mezger A, Novikov I, et al
    Patterns and predictors of Staphylococcus aureus carriage during the first year of life; a longitudinal study.
    J Clin Microbiol. 2019 Jul 3. pii: JCM.00282-19. doi: 10.1128/JCM.00282.
    PubMed     Text format     Abstract available


    June 2019
  12. ESTRADA AA, Gottschalk M, Rossow S, Rendahl A, et al
    Serotype and Genotype (Multilocus Sequence Type) of Streptococcus suis Isolates from the United States Serve as Predictors of Pathotype.
    J Clin Microbiol. 2019 Jun 26. pii: JCM.00377-19. doi: 10.1128/JCM.00377.
    PubMed     Text format     Abstract available


  13. STUCKY HUNTER E, Richardson MD, Denning DW
    Evaluation of LD Bio Aspergillus ICT lateral flow assay for IgG and IgM antibody detection in chronic pulmonary aspergillosis.
    J Clin Microbiol. 2019 Jun 19. pii: JCM.00538-19. doi: 10.1128/JCM.00538.
    PubMed     Text format     Abstract available


  14. DURANT TJS, Merwede J, Reynolds J, Peaper DR, et al
    Optimization of Turnaround Time for Group A Streptococcus PCR.
    J Clin Microbiol. 2019 Jun 19. pii: JCM.00619-19. doi: 10.1128/JCM.00619.
    PubMed     Text format     Abstract available


  15. ALCAIDE F, Trastoy R, Moure R, Gonzalez-Bardanca M, et al
    <<Multiplex Real time PCR-shortTUB assay for detection of the Mycobacterium tuberculosis complex in smear-negative clinical samples with low mycobacterial loads>>.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00733-19. doi: 10.1128/JCM.00733.
    PubMed     Text format     Abstract available


  16. SIDDIQI OK, Birbeck GL, Ghebremichael M, Mubanga E, et al
    A Prospective Cohort Study on the Performance of CSF Xpert MTB/RIF, CSF and Urine LAM Lateral Flow Assay for the Diagnosis of Tuberculous Meningitis in Zambia.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00652-19. doi: 10.1128/JCM.00652.
    PubMed     Text format     Abstract available


  17. TAM KK, Leung KS, Siu GK, Chang KC, et al
    Direct detection of pyrazinamide resistance of Mycobacterium tuberculosis using pncA PCR Sequencing.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00145-19. doi: 10.1128/JCM.00145.
    PubMed     Text format     Abstract available


  18. VAN LEEUWEN LM, Versteegen P, Zaharie SD, van Elsland SL, et al
    Bacterial genotyping of CNS tuberculosis in South Africa: heterogenic M. tuberculosis infection and predominance of lineage 4.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00415-19. doi: 10.1128/JCM.00415.
    PubMed     Text format     Abstract available


  19. SALIMNIA H, Robinson-Dunn B, Gundel A, Campbell A, et al
    Suggested modifications to improve sensitivity and specificity of the 2010 CDC-recommended routine Streptococcus agalactiae screening culture for pregnant women.
    J Clin Microbiol. 2019 Jun 5. pii: JCM.00446-19. doi: 10.1128/JCM.00446.
    PubMed     Text format     Abstract available


    May 2019
  20. CARROLL KC
    Streptococcus Sleuth and Pioneering Woman of Science: A Short Biography of Rebecca Lancefield.
    J Clin Microbiol. 2019 May 29. pii: JCM.00728-19. doi: 10.1128/JCM.00728.
    PubMed     Text format     Abstract available


  21. O'DEA M, Sahibzada S, Jordan D, Laird T, et al
    Genomic, antimicrobial resistance and public health insights into Enterococcus spp. from Australian chickens.
    J Clin Microbiol. 2019 May 22. pii: JCM.00319-19. doi: 10.1128/JCM.00319.
    PubMed     Text format     Abstract available


  22. HUMPHRIES RM
    The new, new daptomycin breakpoint for Enterococcus spp.
    J Clin Microbiol. 2019 May 15. pii: JCM.00600-19. doi: 10.1128/JCM.00600.
    PubMed     Text format     Abstract available


  23. SANOUSSI CN, de Jong BC, Affolabi D, Meehan CJ, et al
    Storage of sputum in cetylpyridinium chloride, OMNIgeneSPUTUM and ethanol is compatible with molecular tuberculosis diagnostic testing.
    J Clin Microbiol. 2019 May 15. pii: JCM.00275-19. doi: 10.1128/JCM.00275.
    PubMed     Text format     Abstract available


  24. LIMA A, Widen R, Vestal G, Uy D, et al
    A TaqMan Probe-based Real-Time PCR Assay for the Rapid Identification of the Emerging Multidrug-Resistant Candida auris on the BD MAX System.
    J Clin Microbiol. 2019 May 8. pii: JCM.01604-18. doi: 10.1128/JCM.01604.
    PubMed     Text format     Abstract available


  25. SHITIKOV E, Vyazovaya A, Malakhova M, Guliaev A, et al
    Simple assay to detect Central Asia Outbreak clade of Mycobacterium tuberculosis Beijing genotype.
    J Clin Microbiol. 2019 May 1. pii: JCM.00215-19. doi: 10.1128/JCM.00215.
    PubMed     Text format     Abstract available


    April 2019
  26. CHO SY, Lee DG, Kim WB, Chun HS, et al
    Epidemiology and antifungal susceptibility profile of Aspergillus species: comparison between environmental and clinical isolates from patients with hematologic malignancies.
    J Clin Microbiol. 2019 Apr 24. pii: JCM.02023-18. doi: 10.1128/JCM.02023.
    PubMed     Text format     Abstract available


  27. MTAFYA B, Sabiiti W, Sabi I, John J, et al
    Molecular bacterial load assay (MBLA) concurs with culture on the NaOH-induced Mycobacterium tuberculosis loss of viability.
    J Clin Microbiol. 2019 Apr 24. pii: JCM.01992-18. doi: 10.1128/JCM.01992.
    PubMed     Text format     Abstract available


  28. DICHTL K, Seybold U, Ormanns S, Horns H, et al
    Evaluation of a novel Aspergillus Antigen ELISA.
    J Clin Microbiol. 2019 Apr 24. pii: JCM.00136-19. doi: 10.1128/JCM.00136.
    PubMed     Text format     Abstract available


  29. UPRETY P, Cardenas AM
    Extragenital Screening is Essential for Comprehensive Detection of Chlamydia trachomatis and Neisseria gonorrhoeae in the Pediatric Population.
    J Clin Microbiol. 2019 Apr 17. pii: JCM.00335-19. doi: 10.1128/JCM.00335.
    PubMed     Text format     Abstract available


  30. MACLEAN E, Sulis G, Denkinger CM, Johnston JC, et al
    Diagnostic accuracy of stool Xpert MTB/RIF for the detection of pulmonary tuberculosis in children: a systematic review and meta-analysis.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.02057-18. doi: 10.1128/JCM.02057.
    PubMed     Text format     Abstract available


  31. CHIN JH, Musubire AK, Morgan N, Pellinen J, et al
    Xpert MTB/RIF Ultra for the Detection of Mycobacterium tuberculosis in Cerebrospinal Fluid.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.00249-19. doi: 10.1128/JCM.00249.
    PubMed     Text format     Abstract available


  32. PORMOHAMMAD A, Nasiri MJ, McHugh TD, Riahi SM, et al
    A systematic review and meta-analysis of the diagnostic accuracy of nucleic acid amplification tests in cerebrospinal fluid for tuberculous meningitis.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.01113-18. doi: 10.1128/JCM.01113.
    PubMed     Text format     Abstract available


  33. JONES RC, Harris LG, Morgan S, Ruddy MC, et al
    Phylogenetic analysis of Mycobacterium tuberculosis strains in Wales using core genome MLST to analyse whole genome sequencing data.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.02025-18. doi: 10.1128/JCM.02025.
    PubMed     Text format     Abstract available


  34. WILEMAN TM, Weinert LA, Howell KJ, Wang J, et al
    Pathotyping the Zoonotic Pathogen Streptococcus suis: Novel Genetic Markers to Differentiate Invasive Disease-Associated Isolates from Non-Disease Associated Isolates from England and Wales.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.01712-18. doi: 10.1128/JCM.01712.
    PubMed     Text format     Abstract available


  35. SHIN JH, Pride DT
    Comparison of Three Nucleic Acid Amplification Tests (NAATs) and Culture for Detection of Group B Streptococcus (GBS) from Enrichment Broth.
    J Clin Microbiol. 2019 Apr 3. pii: JCM.01958-18. doi: 10.1128/JCM.01958.
    PubMed     Text format     Abstract available


  36. YAMAGUCHI T, Kawahara R, Katsukawa C, Kanki M, et al
    Correction for Yamaguchi et al., "Foodborne Outbreak of Group G Streptococcal Pharyngitis in a School Dormitory in Osaka, Japan".
    J Clin Microbiol. 2019;57.
    PubMed     Text format    


    March 2019
  37. CHENG MP, Lawandi A, Lee TC, Dufresne PJ, et al
    Triazole Antifungal Susceptibility Patterns among Aspergillus species in Quebec, Canada.
    J Clin Microbiol. 2019 Mar 27. pii: JCM.00404-19. doi: 10.1128/JCM.00404.
    PubMed     Text format     Abstract available


  38. SZEKELY A, Borman AM, Johnson EM
    Candida auris isolates of the Southern Asian and South African lineages exhibit different phenotypic and antifungal susceptibility profiles in vitro.
    J Clin Microbiol. 2019 Mar 13. pii: JCM.02055-18. doi: 10.1128/JCM.02055.
    PubMed     Text format     Abstract available


  39. TAKAZONO T, Ito Y, Tashiro M, Nishimura K, et al
    Evaluation of Aspergillus-specific Lateral-Flow Device Test using Serum and Bronchoalveolar Lavage Fluid for Diagnosis of Chronic Pulmonary Aspergillosis.
    J Clin Microbiol. 2019 Mar 6. pii: JCM.00095-19. doi: 10.1128/JCM.00095.
    PubMed     Text format     Abstract available


    February 2019
  40. KOTASKOVA I, Obrucova H, Lyckova V, Ruzicka F, et al
    Capability of fluorescent capillary electrophoresis to distinguish species of Candida parapsilosis complex.
    J Clin Microbiol. 2019 Feb 27. pii: JCM.00135-19. doi: 10.1128/JCM.00135.
    PubMed     Text format     Abstract available


  41. PARK JH, Jin CE, Koo B, Kwon J, et al
    A simple microfluidic assay for diagnosing tuberculous meningitis in HIV-uninfected patients.
    J Clin Microbiol. 2019 Feb 27. pii: JCM.01975-18. doi: 10.1128/JCM.01975.
    PubMed     Text format     Abstract available


  42. WELSH RM, Sexton DJ, Forsberg K, Vallabhaneni S, et al
    Insights into the Unique Nature of the East Asian Clade of the Emerging Pathogenic Yeast, Candida auris.
    J Clin Microbiol. 2019 Feb 13. pii: JCM.00007-19. doi: 10.1128/JCM.00007.
    PubMed     Text format     Abstract available


  43. TICKLER IA, Tenover FC, Dewell S, Le VM, et al
    Streptococcus agalactiae strains with chromosomal deletions evade detection with molecular methods.
    J Clin Microbiol. 2019 Feb 13. pii: JCM.02040-18. doi: 10.1128/JCM.02040.
    PubMed     Text format     Abstract available


  44. SABIITI W, Azam K, Esmeraldo E, Bhatt N, et al
    Heat-inactivation renders sputum safe and preserves Mycobacterium tuberculosis RNA for downstream molecular tests.
    J Clin Microbiol. 2019 Feb 6. pii: JCM.01778-18. doi: 10.1128/JCM.01778.
    PubMed     Text format     Abstract available


  45. KWON YJ, Shin JH, Byeon SA, Choi MJ, et al
    Candida auris Clinical Isolates from South Korea: Identification, Antifungal Susceptibility, and Genotyping.
    J Clin Microbiol. 2019 Feb 6. pii: JCM.01624-18. doi: 10.1128/JCM.01624.
    PubMed     Text format     Abstract available


    January 2019
  46. OBRUCOVA H, Kotaskova I, Tihelkova R, Hola V, et al
    Fluorescent capillary electrophoresis is superior to culture in detecting Candida species from samples of urinary catheters and ureteral stents with mono- or polyfungal biofilm growth.
    J Clin Microbiol. 2019 Jan 23. pii: JCM.01861-18. doi: 10.1128/JCM.01861.
    PubMed     Text format     Abstract available


  47. MERCIER T, Schauwvlieghe A, de Kort E, Dunbar A, et al
    Diagnosing invasive pulmonary aspergillosis in hematology patients: a retrospective multicenter evaluation of a novel lateral flow device.
    J Clin Microbiol. 2019 Jan 16. pii: JCM.01913-18. doi: 10.1128/JCM.01913.
    PubMed     Text format     Abstract available


  48. NEUMANN B, Prior K, Bender JK, Harmsen D, et al
    A core genome multilocus sequence typing (cgMLST) scheme for Enterococcus faecalis.
    J Clin Microbiol. 2019 Jan 16. pii: JCM.01686-18. doi: 10.1128/JCM.01686.
    PubMed     Text format     Abstract available


  49. VAN DER POL B, Fife K, Taylor SN, Nye MB, et al
    Evaluation of the Performance of the cobas(R) CT/NG Test for Use on the cobas(R) 6800/8800 Systems for the Detection of Chlamydia trachomatis (CT) and Neisseria gonorrhoeae (NG) in Male and Female Urogenital Samples.
    J Clin Microbiol. 2019 Jan 16. pii: JCM.01996-18. doi: 10.1128/JCM.01996.
    PubMed     Text format     Abstract available


  50. CANVER MC, Gonzalez MD, Ford BA, Arnold AR, et al
    Improved Performance of a Rapid Immunochromatographic Assay for the Detection of PBP2a in non-Staphylococcus aureus Staphylococcal Species.
    J Clin Microbiol. 2019 Jan 16. pii: JCM.01417-18. doi: 10.1128/JCM.01417.
    PubMed     Text format     Abstract available


  51. SEHGAL IS, Dhooria S, Choudhary H, Aggarwal AN, et al
    Utility of serum and bronchoalveolar lavage fluid galactomannan in the diagnosis of chronic pulmonary aspergillosis.
    J Clin Microbiol. 2019 Jan 9. pii: JCM.01821-18. doi: 10.1128/JCM.01821.
    PubMed     Text format     Abstract available


  52. JOSTE V, Gyde E, Toullec L, Courboules C, et al
    Enterococcus faecium and ampicillin susceptibility determination: overestimation of resistance with disk diffusion method using ampicillin 2 microg?
    J Clin Microbiol. 2019 Jan 2. pii: JCM.01467-18. doi: 10.1128/JCM.01467.
    PubMed     Text format     Abstract available


    December 2018
  53. OPOTA O, Zakham F, Mazza-Stalder J, Nicod L, et al
    Added-value of Xpert MTB/RIF Ultra for the diagnosis of pulmonary tuberculosis in a low prevalence setting.
    J Clin Microbiol. 2018 Dec 12. pii: JCM.01717-18. doi: 10.1128/JCM.01717.
    PubMed     Text format     Abstract available


  54. LUABEYA AK, Wood RC, Shenje J, Filander E, et al
    NON-INVASIVE DETECTION OF TUBERCULOSIS BY ORAL SWAB ANALYSIS.
    J Clin Microbiol. 2018 Dec 12. pii: JCM.01847-18. doi: 10.1128/JCM.01847.
    PubMed     Text format     Abstract available


  55. DONATO LJ, Myhre NK, Murray MA, McDonah MR, et al
    Assessment of Test Performance and Potential for Environmental Contamination Associated with a Point-of-Care Molecular Assay for Group A Streptococcus in an End-User Setting.
    J Clin Microbiol. 2018 Dec 5. pii: JCM.01629-18. doi: 10.1128/JCM.01629.
    PubMed     Text format     Abstract available


    November 2018
  56. EMERY CL, Relich RF, Davis TH, Young S, et al
    Multicenter Evaluation of NeuMoDx Group B Streptococcus (GBS) Assay on the NeuMoDx 288 Molecular System.
    J Clin Microbiol. 2018 Nov 21. pii: JCM.01324-18. doi: 10.1128/JCM.01324.
    PubMed     Text format     Abstract available


  57. ALCANTARA R, Fuentes P, Antiparra R, Santos M, et al
    MODS-Wayne: A colorimetric adaptation of the MODS assay for the detection of Mycobacterium tuberculosis pyrazinamide resistance from sputum samples.
    J Clin Microbiol. 2018 Nov 14. pii: JCM.01162-18. doi: 10.1128/JCM.01162.
    PubMed     Text format     Abstract available


  58. ECHANIZ-AVILES G, Guerreiro SI, Silva-Costa C, Mendes CI, et al
    Streptococcus pneumoniae serotype 3 in Mexico (1994-2017): decrease of the unusual CC4909 lineage post-PCV13 introduction.
    J Clin Microbiol. 2018 Nov 7. pii: JCM.01354-18. doi: 10.1128/JCM.01354.
    PubMed     Text format     Abstract available


  59. VAZIRI F, Kohl TA, Ghajavand H, Kargarpour Kamakoli M, et al
    The genetic diversity of multi and extensively drug resistant Mycobacterium tuberculosis in the capital of Iran revealed by whole genome sequencing.
    J Clin Microbiol. 2018 Nov 7. pii: JCM.01477-18. doi: 10.1128/JCM.01477.
    PubMed     Text format     Abstract available


  60. FERNANDEZ-CARBALLO BL, Broger T, Wyss R, Banaei N, et al
    Towards the development of a cfDNA-based in-vitro diagnostic test for infectious diseases: A review of evidence for tuberculosis.
    J Clin Microbiol. 2018 Nov 7. pii: JCM.01234-18. doi: 10.1128/JCM.01234.
    PubMed     Text format     Abstract available


    October 2018
  61. BERHANU RH, David A, da Silva P, Shearer K, et al
    Performance of Xpert MTB/RIF, Xpert Ultra, and Abbott Real Time MTB for the diagnosis of pulmonary tuberculosis in a high HIV burden setting.
    J Clin Microbiol. 2018 Oct 10. pii: JCM.00560-18. doi: 10.1128/JCM.00560.
    PubMed     Text format     Abstract available


    September 2018
  62. RAJASINGHAM R, Wake RM, Beyene T, Katende A, et al
    Cryptococcal Meningitis Diagnostics and Screening in the Era of Point-of-Care Laboratory Testing.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.01238-18. doi: 10.1128/JCM.01238.
    PubMed     Text format     Abstract available


  63. SIMOR AE, Porter V, Mubareka S, Chouinard M, et al
    Rapid Identification of Candida Species from Positive Blood Cultures Using the FilmArray Blood Culture Identification (BCID) Panel.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.01387-18. doi: 10.1128/JCM.01387.
    PubMed     Text format     Abstract available


  64. SIGAL GB, Pinter A, Lowary TL, Kawasaki M, et al
    A novel sensitive immunoassay targeting the MTX-Lipoarabinomannan epitope meets the WHO's performance target for Tuberculosis diagnosis.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.01338-18. doi: 10.1128/JCM.01338.
    PubMed     Text format     Abstract available


  65. SADER HS, Rhomberg PR, Doyle TB, Flamm RK, et al
    Evaluation of the Revised Ceftaroline Disk Diffusion Breakpoints when Testing a Challenge Collection of Methicillin-Resistant Staphylococcus aureus.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.00777-18. doi: 10.1128/JCM.00777.
    PubMed     Text format     Abstract available


  66. SEXTON DJ, Kordalewska M, Bentz ML, Welsh RM, et al
    "Direct detection of emergent fungal pathogen Candida auris in clinical skin swabs by SYBR Green qPCR assay".
    J Clin Microbiol. 2018 Sep 19. pii: JCM.01337-18. doi: 10.1128/JCM.01337.
    PubMed     Text format     Abstract available


  67. WYLLIE DH, Robinson E, Peto T, Crook DW, et al
    Identifying mixed Mycobacterium tuberculosis infection and laboratory cross-contamination during Mycobacterial sequencing programs.
    J Clin Microbiol. 2018 Sep 12. pii: JCM.00923-18. doi: 10.1128/JCM.00923.
    PubMed     Text format     Abstract available


  68. CORNICK JE, Kiran AM, Vivancos R, Van Aartsen J, et al
    Erratum for Cornick et al., "Epidemiological and Molecular Characterization of an Invasive Group A Streptococcus emm32.2 Outbreak".
    J Clin Microbiol. 2018;56.
    PubMed     Text format    


    August 2018
  69. ROOF I, Jajou R, Kamst M, Mulder A, et al
    Prevalence and characterization of heterogeneous VNTR clusters comprising drug susceptible and/or variable resistant Mycobacterium tuberculosis complex isolates in the Netherlands from 2004-2016.
    J Clin Microbiol. 2018 Aug 29. pii: JCM.00887-18. doi: 10.1128/JCM.00887.
    PubMed     Text format     Abstract available


  70. RYU MR, Park MS, Cho EH, Jung CW, et al
    Comparative Evaluation of QuantiFERON-TB Gold In-Tube and QuantiFERON-TB Gold Plus in the Diagnosis of Latent Tuberculosis Infection in Immunocompromised Patients.
    J Clin Microbiol. 2018 Aug 22. pii: JCM.00438-18. doi: 10.1128/JCM.00438.
    PubMed     Text format     Abstract available


  71. WANG HC, Hsieh MI, Choi PC, Wu CJ, et al
    Comparison of the Sensititre YeastOne and CLSI M38-A2 microdilution methods in determining the activity of amphotericin B, itraconazole, voriconazole, and posaconazole against Aspergillus species.
    J Clin Microbiol. 2018 Aug 9. pii: JCM.00780-18. doi: 10.1128/JCM.00780.
    PubMed     Text format     Abstract available


  72. LOUKIL A, Kirtania P, Bedotto M, Drancourt M, et al
    FISHing Mycobacterium tuberculosis complex using a rpoB DNA probe bait.
    J Clin Microbiol. 2018 Aug 1. pii: JCM.00568-18. doi: 10.1128/JCM.00568.
    PubMed     Text format     Abstract available


  73. TORRES RSLA, Santos TZ, Bernardes AFL, Soares PA, et al
    Outbreak of Glomerulonephritis by Streptococcus zooepidemicus SzPHV5 type, in Monte Santo de Minas, Minas Gerais, Brazil.
    J Clin Microbiol. 2018 Aug 1. pii: JCM.00845-18. doi: 10.1128/JCM.00845.
    PubMed     Text format     Abstract available


  74. FENG JY, Pan SW, Huang SF, Chen YY, et al
    Depressed interferon-gamma responses and treatment outcomes in tuberculosis patients: a prospective cohort study.
    J Clin Microbiol. 2018 Aug 1. pii: JCM.00664-18. doi: 10.1128/JCM.00664.
    PubMed     Text format     Abstract available


    July 2018
  75. LOUKIL A, Darriet-Giudicelli F, Eldin C, Drancourt M, et al
    Pulmonary tuberculosis conversion documented by microscopic DDD staining.
    J Clin Microbiol. 2018 Jul 25. pii: JCM.01108-18. doi: 10.1128/JCM.01108.
    PubMed     Text format     Abstract available


  76. MYINT T, Chow FC, Bloch KC, Raymond-Guillen L, et al
    Detection of (1,3)-beta-d-Glucan in Cerebrospinal Fluid in Histoplasma Meningitis.
    J Clin Microbiol. 2018 Jul 18. pii: JCM.00663-18. doi: 10.1128/JCM.00663.
    PubMed     Text format     Abstract available


  77. FERNANDEZ-CRUZ A, Magira E, Heo ST, Evans S, et al
    Bronchoalveolar lavage fluid cytology in culture-documented invasive pulmonary aspergillosis in patients with hematologic diseases: analysis of 67 episodes.
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  78. VATANSHENASSAN M, Boekhout T, Lass-Florl C, Lackner M, et al
    MBT ASTRA: Proof-of-concept for a rapid MALDI-TOF MS based method to detect caspofungin resistance in Candida albicans and Candida glabrata.
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  79. WALTERS E, Scott L, Nabeta P, Demers AM, et al
    Molecular detection of Mycobacterium tuberculosis from stool in young children using a novel centrifugation-free processing method.
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    Population structure and antimicrobial resistance of canine uropathogenic Escherichia coli.
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    Diagnostic accuracy and utility of a new molecular assay for multidrug-resistant tuberculosis: FluoroType MTBDR.
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    Whole-genome sequence analysis of multidrug resistant Campylobacter spp. isolates: a focus on aminoglycoside resistance determinants.
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    Viability of Candida auris and other Candida species after various MALDI-TOF extraction protocols.
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    Evaluation of the Xpert MTB/RIF Ultra Assay for Direct Detection of Mycobacterium tuberculosis Complex in Smear-Negative Extrapulmonary Samples.
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    Mismatch Amplification Mutation Assay (MAMA)-Based Real-Time PCR for Rapid Detection of Neisseria gonorrhoeae and Antimicrobial Resistance Determinants in Clinical Specimens.
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    Accuracy of different bioinformatics methods in detecting antibiotic resistance and virulence factors from Staphylococcus aureus whole genome sequences.
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  90. SUN L, Talarico S, Yao L, He L, et al
    Droplet Digital PCR detection of Helicobacter pylori clarithromycin resistance reveals frequent heteroresistance.
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  91. YU F, Lv J, Niu S, Du H, et al
    Multiplex PCR analysis for the rapid detection of Klebsiella pneumoniae carbapenem-resistant (ST258, 11) and hypervirulent (ST23, 65, 86, 375) strains.
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    Performance of Chlamydia trachomatis OmcB ELISA in the Serodiagnosis of Chlamydia trachomatis Infection in Women.
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    In vitro evaluation of BacT/Alert FA blood culture bottles and T2Candida assay for the detection of Candida in the presence of antifungals.
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    Serratia marcescens outbreak in a neonatal intensive care unit (NICU): new insights from next-generation sequencing applications.
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  95. ZENG X, Xu Y, Zhou Y, Li H, et al
    McSpoligotyping, a one-step melting curve analysis-based protocol for spoligotyping of Mycobacterium tuberculosis.
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    Control of artefactual variation in reported inter-sample relatedness during clinical use of a Mycobacterium tuberculosis sequencing pipeline.
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    May 2018
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    Direct whole genome sequencing of sputum accurately identifies drug resistant Mycobacterium tuberculosis faster than MGIT culture sequencing.
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    Multicenter Diagnostic Accuracy Evaluation of the Luminex(R) ARIES(R) Real-Time PCR Assay for Group B Streptococcus detection in Lim-Enriched samples.
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  99. BLAKISTON M, Chiu W, Wong C, Morpeth S, et al
    Diagnostic performance of pleural fluid adenosine deaminase (pfADA) for Tuberculous pleural effusion in a low incidence setting.
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    Quantiferon-TB Gold Plus is a More Sensitive Screening Tool than Quantiferon-TB Gold In-Tube for Latent Tuberculosis Infection among Older Adults in Long-Term Care Facility.
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    Comparison of the QuantiFERON-TB Gold Plus and QuantiFERON-TB Gold In-Tube Interferon-gamma Release Assays in Patients at Risk for Tuberculosis and in Healthcare Workers.
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    Reduction in the percentage of clusters of Candida albicans and Candida parapsilosis causing candidemia in a general hospital in Madrid, Spain.
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  103. LO SW, Gladstone RA, van Tonder AJ, Hawkins PA, et al
    Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction.
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    Emerging multidrug-resistant Candida duobushaemulonii infections in Panama hospitals: importance of laboratory surveillance and accurate identification.
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    Retrospective Evaluation of Infants Aged 1-60 Days With Residual CSF Tested Using the FilmArray(R) Meningitis/Encephalitis (ME) Panel.
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    Group B Streptococcus vaginal carriage in pregnant women deciphered by CRISPR analysis.
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    March 2018
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    Validation of the FluoroType(R) MTBDR assay for the detection of rifampicin and isoniazid resistance in Mycobacterium tuberculosis complex isolates.
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  110. DAUM LT, Konstantynovska OS, Solodiankin OS, Liashenko OO, et al
    Next-Generation Sequencing for Characterizing Drug Resistant Mycobacterium tuberculosis Genes from Clinical Isolates in the Ukraine.
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    Universal Genotyping for Tuberculosis Prevention Programs: A Five-Year Comparison with On-Request Genotyping.
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    Performance of a Highly-Sensitive Mycobacterium Tuberculosis Complex Real-time PCR Assay for the Diagnosis of Pulmonary Tuberculosis in a Low Prevalence Setting: A Prospective Intervention Study.
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  113. MIOTTO P, Cabibbe AM, Borroni E, Degano M, et al
    Role of disputed mutations in the rpoB gene in the interpretation of automated liquid MGIT culture results for rifampicin susceptibility testing of Mycobacterium tuberculosis.
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    One year in the life of a rapid syndromic panel for meningitis/encephalitis: a pediatric tertiary care facility's experience.
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    Multi- and Extensively-Drug Resistant Mycobacterium tuberculosis in South Africa: A Molecular Analysis of Historical Isolates.
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    February 2018
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    The misidentification of Candida auris using RapID Yeast Plus, a commercial, biochemical enzyme-based manual rapid identification system.
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    Food-Borne Outbreak of Group G Streptococcal Pharyngitis in a School Dormitory in Osaka, Japan.
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    Whole-genome sequence analysis of Streptococcus pneumoniae strains that cause hospital-acquired pneumonia infections.
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  119. FALCI DR, Pasqualotto AC, Nucci M, Monteiro AA, et al
    Low sensitivity of Lateral Flow Device-Aspergillus in patients with probable and proven aspergillosis: results from a multicentre evaluation.
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    HIV-associated M. tuberculosis blood stream infection is under-diagnosed by a single blood culture.
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    Evaluation of a Commercial Multiplex Molecular Panel For the Diagnosis of Infectious Meningitis and Encephalitis.
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    Fungemia Surveillance in Denmark Demonstrates Emergence of Candida non-albicans, Higher Antifungal Usage and Resistance Rates When Compared to Other Nations.
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    Rapid, Accurate Identification of Candida auris by Using a Novel MALDI-TOF Database (Library).
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  126. BARD JD, Alby K
    Point-Counterpoint: Meningitis/encephalitis syndromic testing in the Clinical Laboratory.
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    Epidemiology, Clinical Characteristics, and Antimicrobial Susceptibility Profiles of Human Clinical Isolates of Staphylococcus intermedius Group.
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    Evaluation of Simplexa Group A Strep Direct Kit compared to Hologic(R) Group A streptococcal direct assay for detection of Group A Streptococcus (GAS) in throat swabs.
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    Genotyping Multi-Drug Resistant M. tuberculosis from Primary Sputum and Decontaminated Sediment with an Integrated Microfluidic Amplification Microarray.
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    Comparison of the Alere i and BD Veritor in the detection of Group A Streptococcus and the hypothetical impact of results on antibiotic utilization.
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    False positive Xpert MTB/RIF results in re-tested patients with previous tuberculosis: frequency, profile, and prospective clinical outcomes.
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    December 2017
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    Genome-based analysis of Enterococcus faecium bacteremia associated with recurrent and mixed strain infection.
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    Pathogen identification by multiplex Lightmix(R) RT-PCR in patients with meningitis and culture-negative cerebrospinal fluid.
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    A Comparison of Aspergillus and Mucorales PCR Testing of Different BAL Fractions from Patients with Suspected Invasive Pulmonary Fungal Disease.
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    Development and validation of a real-time PCR assay for rapid detection of Candida auris from surveillance samples.
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    Candida auris: An Emerging Fungal Pathogen.
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  139. JAJOU R, de Neeling A, Rasmussen EM, Norman A, et al
    A predominant VNTR cluster of Mycobacterium tuberculosis isolates among asylum seekers in the Netherlands and Denmark deciphered by whole genome sequencing.
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    Quantitative analysis of interferon-gamma release assay response in children with latent and active tuberculosis.
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    Highly Sensitive Detection of Isoniazid Heteroresistance in Mycobacterium tuberculosis by DeepMelt Assay.
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  144. WHITE PL, Parr C, Barnes RA
    Predicting invasive aspergillosis in haematology patients by combining clinical and genetic risk factors with early diagnostic biomarkers.
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  146. YARBROUGH ML, Warren DK, Allen K, Burkholder D, et al
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  153. PRASIDTHRATHSINT K, Lewis J, Couturier MR
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    September 2017
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    Genetic mimetics of Mycobacterium tuberculosis and methicillin resistant Staphylococcus aureus as verification standards for molecular diagnostics.
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    July 2017
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    June 2017
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    May 2017
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