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Articles published in J Clin Microbiol

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Single Articles


    March 2019
  1. SZEKELY A, Borman AM, Johnson EM
    Candida auris isolates of the Southern Asian and South African lineages exhibit different phenotypic and antifungal susceptibility profiles in vitro.
    J Clin Microbiol. 2019 Mar 13. pii: JCM.02055-18. doi: 10.1128/JCM.02055.
    PubMed     Text format     Abstract available


  2. TAKAZONO T, Ito Y, Tashiro M, Nishimura K, et al
    Evaluation of Aspergillus-specific Lateral-Flow Device Test using Serum and Bronchoalveolar Lavage Fluid for Diagnosis of Chronic Pulmonary Aspergillosis.
    J Clin Microbiol. 2019 Mar 6. pii: JCM.00095-19. doi: 10.1128/JCM.00095.
    PubMed     Text format     Abstract available


    February 2019
  3. KOTASKOVA I, Obrucova H, Lyckova V, Ruzicka F, et al
    Capability of fluorescent capillary electrophoresis to distinguish species of Candida parapsilosis complex.
    J Clin Microbiol. 2019 Feb 27. pii: JCM.00135-19. doi: 10.1128/JCM.00135.
    PubMed     Text format     Abstract available


  4. PARK JH, Jin CE, Koo B, Kwon J, et al
    A simple microfluidic assay for diagnosing tuberculous meningitis in HIV-uninfected patients.
    J Clin Microbiol. 2019 Feb 27. pii: JCM.01975-18. doi: 10.1128/JCM.01975.
    PubMed     Text format     Abstract available


  5. WELSH RM, Sexton DJ, Forsberg K, Vallabhaneni S, et al
    Insights into the Unique Nature of the East Asian Clade of the Emerging Pathogenic Yeast, Candida auris.
    J Clin Microbiol. 2019 Feb 13. pii: JCM.00007-19. doi: 10.1128/JCM.00007.
    PubMed     Text format     Abstract available


  6. TICKLER IA, Tenover FC, Dewell S, Le VM, et al
    Streptococcus agalactiae strains with chromosomal deletions evade detection with molecular methods.
    J Clin Microbiol. 2019 Feb 13. pii: JCM.02040-18. doi: 10.1128/JCM.02040.
    PubMed     Text format     Abstract available


  7. SABIITI W, Azam K, Esmeraldo E, Bhatt N, et al
    Heat-inactivation renders sputum safe and preserves Mycobacterium tuberculosis RNA for downstream molecular tests.
    J Clin Microbiol. 2019 Feb 6. pii: JCM.01778-18. doi: 10.1128/JCM.01778.
    PubMed     Text format     Abstract available


  8. KWON YJ, Shin JH, Byeon SA, Choi MJ, et al
    Candida auris Clinical Isolates from South Korea: Identification, Antifungal Susceptibility, and Genotyping.
    J Clin Microbiol. 2019 Feb 6. pii: JCM.01624-18. doi: 10.1128/JCM.01624.
    PubMed     Text format     Abstract available


    January 2019
  9. OBRUCOVA H, Kotaskova I, Tihelkova R, Hola V, et al
    Fluorescent capillary electrophoresis is superior to culture in detecting Candida species from samples of urinary catheters and ureteral stents with mono- or polyfungal biofilm growth.
    J Clin Microbiol. 2019 Jan 23. pii: JCM.01861-18. doi: 10.1128/JCM.01861.
    PubMed     Text format     Abstract available


  10. MERCIER T, Schauwvlieghe A, de Kort E, Dunbar A, et al
    Diagnosing invasive pulmonary aspergillosis in hematology patients: a retrospective multicenter evaluation of a novel lateral flow device.
    J Clin Microbiol. 2019 Jan 16. pii: JCM.01913-18. doi: 10.1128/JCM.01913.
    PubMed     Text format     Abstract available


  11. NEUMANN B, Prior K, Bender JK, Harmsen D, et al
    A core genome multilocus sequence typing (cgMLST) scheme for Enterococcus faecalis.
    J Clin Microbiol. 2019 Jan 16. pii: JCM.01686-18. doi: 10.1128/JCM.01686.
    PubMed     Text format     Abstract available


  12. VAN DER POL B, Fife K, Taylor SN, Nye MB, et al
    Evaluation of the Performance of the cobas(R) CT/NG Test for Use on the cobas(R) 6800/8800 Systems for the Detection of Chlamydia trachomatis (CT) and Neisseria gonorrhoeae (NG) in Male and Female Urogenital Samples.
    J Clin Microbiol. 2019 Jan 16. pii: JCM.01996-18. doi: 10.1128/JCM.01996.
    PubMed     Text format     Abstract available


  13. CANVER MC, Gonzalez MD, Ford BA, Arnold AR, et al
    Improved Performance of a Rapid Immunochromatographic Assay for the Detection of PBP2a in non-Staphylococcus aureus Staphylococcal Species.
    J Clin Microbiol. 2019 Jan 16. pii: JCM.01417-18. doi: 10.1128/JCM.01417.
    PubMed     Text format     Abstract available


  14. SEHGAL IS, Dhooria S, Choudhary H, Aggarwal AN, et al
    Utility of serum and bronchoalveolar lavage fluid galactomannan in the diagnosis of chronic pulmonary aspergillosis.
    J Clin Microbiol. 2019 Jan 9. pii: JCM.01821-18. doi: 10.1128/JCM.01821.
    PubMed     Text format     Abstract available


  15. JOSTE V, Gyde E, Toullec L, Courboules C, et al
    Enterococcus faecium and ampicillin susceptibility determination: overestimation of resistance with disk diffusion method using ampicillin 2 microg?
    J Clin Microbiol. 2019 Jan 2. pii: JCM.01467-18. doi: 10.1128/JCM.01467.
    PubMed     Text format     Abstract available


    December 2018
  16. OPOTA O, Zakham F, Mazza-Stalder J, Nicod L, et al
    Added-value of Xpert MTB/RIF Ultra for the diagnosis of pulmonary tuberculosis in a low prevalence setting.
    J Clin Microbiol. 2018 Dec 12. pii: JCM.01717-18. doi: 10.1128/JCM.01717.
    PubMed     Text format     Abstract available


  17. LUABEYA AK, Wood RC, Shenje J, Filander E, et al
    NON-INVASIVE DETECTION OF TUBERCULOSIS BY ORAL SWAB ANALYSIS.
    J Clin Microbiol. 2018 Dec 12. pii: JCM.01847-18. doi: 10.1128/JCM.01847.
    PubMed     Text format     Abstract available


  18. DONATO LJ, Myhre NK, Murray MA, McDonah MR, et al
    Assessment of Test Performance and Potential for Environmental Contamination Associated with a Point-of-Care Molecular Assay for Group A Streptococcus in an End-User Setting.
    J Clin Microbiol. 2018 Dec 5. pii: JCM.01629-18. doi: 10.1128/JCM.01629.
    PubMed     Text format     Abstract available


    November 2018
  19. EMERY CL, Relich RF, Davis TH, Young S, et al
    Multicenter Evaluation of NeuMoDx Group B Streptococcus (GBS) Assay on the NeuMoDx 288 Molecular System.
    J Clin Microbiol. 2018 Nov 21. pii: JCM.01324-18. doi: 10.1128/JCM.01324.
    PubMed     Text format     Abstract available


  20. ALCANTARA R, Fuentes P, Antiparra R, Santos M, et al
    MODS-Wayne: A colorimetric adaptation of the MODS assay for the detection of Mycobacterium tuberculosis pyrazinamide resistance from sputum samples.
    J Clin Microbiol. 2018 Nov 14. pii: JCM.01162-18. doi: 10.1128/JCM.01162.
    PubMed     Text format     Abstract available


  21. ECHANIZ-AVILES G, Guerreiro SI, Silva-Costa C, Mendes CI, et al
    Streptococcus pneumoniae serotype 3 in Mexico (1994-2017): decrease of the unusual CC4909 lineage post-PCV13 introduction.
    J Clin Microbiol. 2018 Nov 7. pii: JCM.01354-18. doi: 10.1128/JCM.01354.
    PubMed     Text format     Abstract available


  22. VAZIRI F, Kohl TA, Ghajavand H, Kargarpour Kamakoli M, et al
    The genetic diversity of multi and extensively drug resistant Mycobacterium tuberculosis in the capital of Iran revealed by whole genome sequencing.
    J Clin Microbiol. 2018 Nov 7. pii: JCM.01477-18. doi: 10.1128/JCM.01477.
    PubMed     Text format     Abstract available


  23. FERNANDEZ-CARBALLO BL, Broger T, Wyss R, Banaei N, et al
    Towards the development of a cfDNA-based in-vitro diagnostic test for infectious diseases: A review of evidence for tuberculosis.
    J Clin Microbiol. 2018 Nov 7. pii: JCM.01234-18. doi: 10.1128/JCM.01234.
    PubMed     Text format     Abstract available


    October 2018
  24. BERHANU RH, David A, da Silva P, Shearer K, et al
    Performance of Xpert MTB/RIF, Xpert Ultra, and Abbott Real Time MTB for the diagnosis of pulmonary tuberculosis in a high HIV burden setting.
    J Clin Microbiol. 2018 Oct 10. pii: JCM.00560-18. doi: 10.1128/JCM.00560.
    PubMed     Text format     Abstract available


    September 2018
  25. RAJASINGHAM R, Wake RM, Beyene T, Katende A, et al
    Cryptococcal Meningitis Diagnostics and Screening in the Era of Point-of-Care Laboratory Testing.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.01238-18. doi: 10.1128/JCM.01238.
    PubMed     Text format     Abstract available


  26. SIMOR AE, Porter V, Mubareka S, Chouinard M, et al
    Rapid Identification of Candida Species from Positive Blood Cultures Using the FilmArray Blood Culture Identification (BCID) Panel.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.01387-18. doi: 10.1128/JCM.01387.
    PubMed     Text format     Abstract available


  27. SIGAL GB, Pinter A, Lowary TL, Kawasaki M, et al
    A novel sensitive immunoassay targeting the MTX-Lipoarabinomannan epitope meets the WHO's performance target for Tuberculosis diagnosis.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.01338-18. doi: 10.1128/JCM.01338.
    PubMed     Text format     Abstract available


  28. SADER HS, Rhomberg PR, Doyle TB, Flamm RK, et al
    Evaluation of the Revised Ceftaroline Disk Diffusion Breakpoints when Testing a Challenge Collection of Methicillin-Resistant Staphylococcus aureus.
    J Clin Microbiol. 2018 Sep 26. pii: JCM.00777-18. doi: 10.1128/JCM.00777.
    PubMed     Text format     Abstract available


  29. SEXTON DJ, Kordalewska M, Bentz ML, Welsh RM, et al
    "Direct detection of emergent fungal pathogen Candida auris in clinical skin swabs by SYBR Green qPCR assay".
    J Clin Microbiol. 2018 Sep 19. pii: JCM.01337-18. doi: 10.1128/JCM.01337.
    PubMed     Text format     Abstract available


  30. WYLLIE DH, Robinson E, Peto T, Crook DW, et al
    Identifying mixed Mycobacterium tuberculosis infection and laboratory cross-contamination during Mycobacterial sequencing programs.
    J Clin Microbiol. 2018 Sep 12. pii: JCM.00923-18. doi: 10.1128/JCM.00923.
    PubMed     Text format     Abstract available


  31. CORNICK JE, Kiran AM, Vivancos R, Van Aartsen J, et al
    Erratum for Cornick et al., "Epidemiological and Molecular Characterization of an Invasive Group A Streptococcus emm32.2 Outbreak".
    J Clin Microbiol. 2018;56.
    PubMed     Text format    


    August 2018
  32. ROOF I, Jajou R, Kamst M, Mulder A, et al
    Prevalence and characterization of heterogeneous VNTR clusters comprising drug susceptible and/or variable resistant Mycobacterium tuberculosis complex isolates in the Netherlands from 2004-2016.
    J Clin Microbiol. 2018 Aug 29. pii: JCM.00887-18. doi: 10.1128/JCM.00887.
    PubMed     Text format     Abstract available


  33. RYU MR, Park MS, Cho EH, Jung CW, et al
    Comparative Evaluation of QuantiFERON-TB Gold In-Tube and QuantiFERON-TB Gold Plus in the Diagnosis of Latent Tuberculosis Infection in Immunocompromised Patients.
    J Clin Microbiol. 2018 Aug 22. pii: JCM.00438-18. doi: 10.1128/JCM.00438.
    PubMed     Text format     Abstract available


  34. WANG HC, Hsieh MI, Choi PC, Wu CJ, et al
    Comparison of the Sensititre YeastOne and CLSI M38-A2 microdilution methods in determining the activity of amphotericin B, itraconazole, voriconazole, and posaconazole against Aspergillus species.
    J Clin Microbiol. 2018 Aug 9. pii: JCM.00780-18. doi: 10.1128/JCM.00780.
    PubMed     Text format     Abstract available


  35. LOUKIL A, Kirtania P, Bedotto M, Drancourt M, et al
    FISHing Mycobacterium tuberculosis complex using a rpoB DNA probe bait.
    J Clin Microbiol. 2018 Aug 1. pii: JCM.00568-18. doi: 10.1128/JCM.00568.
    PubMed     Text format     Abstract available


  36. TORRES RSLA, Santos TZ, Bernardes AFL, Soares PA, et al
    Outbreak of Glomerulonephritis by Streptococcus zooepidemicus SzPHV5 type, in Monte Santo de Minas, Minas Gerais, Brazil.
    J Clin Microbiol. 2018 Aug 1. pii: JCM.00845-18. doi: 10.1128/JCM.00845.
    PubMed     Text format     Abstract available


  37. FENG JY, Pan SW, Huang SF, Chen YY, et al
    Depressed interferon-gamma responses and treatment outcomes in tuberculosis patients: a prospective cohort study.
    J Clin Microbiol. 2018 Aug 1. pii: JCM.00664-18. doi: 10.1128/JCM.00664.
    PubMed     Text format     Abstract available


    July 2018
  38. LOUKIL A, Darriet-Giudicelli F, Eldin C, Drancourt M, et al
    Pulmonary tuberculosis conversion documented by microscopic DDD staining.
    J Clin Microbiol. 2018 Jul 25. pii: JCM.01108-18. doi: 10.1128/JCM.01108.
    PubMed     Text format     Abstract available


  39. MYINT T, Chow FC, Bloch KC, Raymond-Guillen L, et al
    Detection of (1,3)-beta-d-Glucan in Cerebrospinal Fluid in Histoplasma Meningitis.
    J Clin Microbiol. 2018 Jul 18. pii: JCM.00663-18. doi: 10.1128/JCM.00663.
    PubMed     Text format     Abstract available


  40. FERNANDEZ-CRUZ A, Magira E, Heo ST, Evans S, et al
    Bronchoalveolar lavage fluid cytology in culture-documented invasive pulmonary aspergillosis in patients with hematologic diseases: analysis of 67 episodes.
    J Clin Microbiol. 2018 Jul 18. pii: JCM.00962-18. doi: 10.1128/JCM.00962.
    PubMed     Text format     Abstract available


  41. VATANSHENASSAN M, Boekhout T, Lass-Florl C, Lackner M, et al
    MBT ASTRA: Proof-of-concept for a rapid MALDI-TOF MS based method to detect caspofungin resistance in Candida albicans and Candida glabrata.
    J Clin Microbiol. 2018 Jul 18. pii: JCM.00420-18. doi: 10.1128/JCM.00420.
    PubMed     Text format     Abstract available


  42. WALTERS E, Scott L, Nabeta P, Demers AM, et al
    Molecular detection of Mycobacterium tuberculosis from stool in young children using a novel centrifugation-free processing method.
    J Clin Microbiol. 2018 Jul 11. pii: JCM.00781-18. doi: 10.1128/JCM.00781.
    PubMed     Text format     Abstract available


  43. DE VOS M, Derendinger B, Dolby T, Simpson J, et al
    Diagnostic accuracy and utility of a new molecular assay for multidrug-resistant tuberculosis: FluoroType MTBDR.
    J Clin Microbiol. 2018 Jul 5. pii: JCM.00531-18. doi: 10.1128/JCM.00531.
    PubMed     Text format     Abstract available


  44. DIALLO K, Ferrand J, Goehringer F, Selton-Suty C, et al
    Closing the Brief Case: An Unusual Cause of Infective Endocarditis after a Urological Procedure.
    J Clin Microbiol. 2018;56.
    PubMed     Text format    


  45. DIALLO K, Ferrand J, Goehringer F, Selton-Suty C, et al
    The Brief Case: An Unusual Cause of Infective Endocarditis after a Urological Procedure.
    J Clin Microbiol. 2018;56.
    PubMed     Text format    


    June 2018
  46. STERKEL A, Bateman A, Valley A, Warshauer D, et al
    Viability of Candida auris and other Candida species after various MALDI-TOF extraction protocols.
    J Clin Microbiol. 2018 Jun 27. pii: JCM.00886-18. doi: 10.1128/JCM.00886.
    PubMed     Text format     Abstract available


  47. PEREZ-RISCO D, Rodriguez-Temporal D, Valledor-Sanchez I, Alcaide F, et al
    Evaluation of the Xpert MTB/RIF Ultra Assay for Direct Detection of Mycobacterium tuberculosis Complex in Smear-Negative Extrapulmonary Samples.
    J Clin Microbiol. 2018 Jun 27. pii: JCM.00659-18. doi: 10.1128/JCM.00659.
    PubMed     Text format     Abstract available


  48. YAMAMOTO M, Alshahni MM, Tamura T, Satoh K, et al
    Rapid detection of Candida auris based on Loop-mediated Isothermal Amplification (LAMP).
    J Clin Microbiol. 2018 Jun 27. pii: JCM.00591-18. doi: 10.1128/JCM.00591.
    PubMed     Text format     Abstract available


  49. MASON A, Foster D, Bradley P, Golubchik T, et al
    Accuracy of different bioinformatics methods in detecting antibiotic resistance and virulence factors from Staphylococcus aureus whole genome sequences.
    J Clin Microbiol. 2018 Jun 20. pii: JCM.01815-17. doi: 10.1128/JCM.01815.
    PubMed     Text format     Abstract available


  50. GUPTA K, Brown L, Bakshi RK, Press CG, et al
    Performance of Chlamydia trachomatis OmcB ELISA in the Serodiagnosis of Chlamydia trachomatis Infection in Women.
    J Clin Microbiol. 2018 Jun 13. pii: JCM.00275-18. doi: 10.1128/JCM.00275.
    PubMed     Text format     Abstract available


  51. BEYDA ND, Amadio J, Rodriguez JR, Malinowski K, et al
    In vitro evaluation of BacT/Alert FA blood culture bottles and T2Candida assay for the detection of Candida in the presence of antifungals.
    J Clin Microbiol. 2018 Jun 13. pii: JCM.00471-18. doi: 10.1128/JCM.00471.
    PubMed     Text format     Abstract available


  52. ZENG X, Xu Y, Zhou Y, Li H, et al
    McSpoligotyping, a one-step melting curve analysis-based protocol for spoligotyping of Mycobacterium tuberculosis.
    J Clin Microbiol. 2018 Jun 6. pii: JCM.00539-18. doi: 10.1128/JCM.00539.
    PubMed     Text format     Abstract available


  53. WYLLIE DH, Sanderson N, Myers R, Peto T, et al
    Control of artefactual variation in reported inter-sample relatedness during clinical use of a Mycobacterium tuberculosis sequencing pipeline.
    J Clin Microbiol. 2018 Jun 6. pii: JCM.00104-18. doi: 10.1128/JCM.00104.
    PubMed     Text format     Abstract available


    May 2018
  54. DOYLE RM, Burgess C, Williams R, Gorton R, et al
    Direct whole genome sequencing of sputum accurately identifies drug resistant Mycobacterium tuberculosis faster than MGIT culture sequencing.
    J Clin Microbiol. 2018 May 30. pii: JCM.00666-18. doi: 10.1128/JCM.00666.
    PubMed     Text format     Abstract available


  55. HERNANDEZ DR, Wolk DM, Walker KL, Young S, et al
    Multicenter Diagnostic Accuracy Evaluation of the Luminex(R) ARIES(R) Real-Time PCR Assay for Group B Streptococcus detection in Lim-Enriched samples.
    J Clin Microbiol. 2018 May 30. pii: JCM.01768-17. doi: 10.1128/JCM.01768.
    PubMed     Text format     Abstract available


  56. BLAKISTON M, Chiu W, Wong C, Morpeth S, et al
    Diagnostic performance of pleural fluid adenosine deaminase (pfADA) for Tuberculous pleural effusion in a low incidence setting.
    J Clin Microbiol. 2018 May 23. pii: JCM.00258-18. doi: 10.1128/JCM.00258.
    PubMed     Text format     Abstract available


  57. CHIEN JY, Chiang HT, Lu MC, Ko WC, et al
    Quantiferon-TB Gold Plus is a More Sensitive Screening Tool than Quantiferon-TB Gold In-Tube for Latent Tuberculosis Infection among Older Adults in Long-Term Care Facility.
    J Clin Microbiol. 2018 May 23. pii: JCM.00427-18. doi: 10.1128/JCM.00427.
    PubMed     Text format     Abstract available


  58. THEEL ES, Hilgart H, Breen-Lyles M, McCoy K, et al
    Comparison of the QuantiFERON-TB Gold Plus and QuantiFERON-TB Gold In-Tube Interferon-gamma Release Assays in Patients at Risk for Tuberculosis and in Healthcare Workers.
    J Clin Microbiol. 2018 May 9. pii: JCM.00614-18. doi: 10.1128/JCM.00614.
    PubMed     Text format     Abstract available


  59. ESCRIBANO P, Sanchez-Carrillo C, Munoz P, Bouza E, et al
    Reduction in the percentage of clusters of Candida albicans and Candida parapsilosis causing candidemia in a general hospital in Madrid, Spain.
    J Clin Microbiol. 2018 May 9. pii: JCM.00574-18. doi: 10.1128/JCM.00574.
    PubMed     Text format     Abstract available


  60. LO SW, Gladstone RA, van Tonder AJ, Hawkins PA, et al
    Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction.
    J Clin Microbiol. 2018 May 2. pii: JCM.00228-18. doi: 10.1128/JCM.00228.
    PubMed     Text format     Abstract available


  61. DRANCOURT M
    Culturing Stools To Detect Mycobacterium tuberculosis.
    J Clin Microbiol. 2018;56.
    PubMed     Text format    


  62. WALTERS E, Demers AM, van der Zalm MM, Whitelaw A, et al
    Reply to Drancourt, "Culturing Stools To Detect Mycobacterium tuberculosis".
    J Clin Microbiol. 2018;56.
    PubMed     Text format    


    April 2018
  63. RAMOS R, Caceres DH, Perez M, Garcia N, et al
    Emerging multidrug-resistant Candida duobushaemulonii infections in Panama hospitals: importance of laboratory surveillance and accurate identification.
    J Clin Microbiol. 2018 Apr 25. pii: JCM.00371-18. doi: 10.1128/JCM.00371.
    PubMed     Text format     Abstract available


  64. BLASCHKE AJ, Holmberg KM, Daly JA, Leber AL, et al
    Retrospective Evaluation of Infants Aged 1-60 Days With Residual CSF Tested Using the FilmArray(R) Meningitis/Encephalitis (ME) Panel.
    J Clin Microbiol. 2018 Apr 18. pii: JCM.00277-18. doi: 10.1128/JCM.00277.
    PubMed     Text format     Abstract available


  65. BEAURUELLE C, Pastuszka A, Mereghetti L, Lanotte P, et al
    Group B Streptococcus vaginal carriage in pregnant women deciphered by CRISPR analysis.
    J Clin Microbiol. 2018 Apr 4. pii: JCM.01949-17. doi: 10.1128/JCM.01949.
    PubMed     Text format     Abstract available


    March 2018
  66. HILLEMANN D, Haasis C, Andres S, Behn T, et al
    Validation of the FluoroType(R) MTBDR assay for the detection of rifampicin and isoniazid resistance in Mycobacterium tuberculosis complex isolates.
    J Clin Microbiol. 2018 Mar 28. pii: JCM.00072-18. doi: 10.1128/JCM.00072.
    PubMed     Text format     Abstract available


  67. DAUM LT, Konstantynovska OS, Solodiankin OS, Liashenko OO, et al
    Next-Generation Sequencing for Characterizing Drug Resistant Mycobacterium tuberculosis Genes from Clinical Isolates in the Ukraine.
    J Clin Microbiol. 2018 Mar 21. pii: JCM.00009-18. doi: 10.1128/JCM.00009.
    PubMed     Text format     Abstract available


  68. GUTHRIE JL, Kong C, Roth D, Jorgensen D, et al
    Universal Genotyping for Tuberculosis Prevention Programs: A Five-Year Comparison with On-Request Genotyping.
    J Clin Microbiol. 2018 Mar 14. pii: JCM.01778-17. doi: 10.1128/JCM.01778.
    PubMed     Text format     Abstract available


  69. VINUESA V, Borras R, Briones ML, Clari MA, et al
    Performance of a Highly-Sensitive Mycobacterium Tuberculosis Complex Real-time PCR Assay for the Diagnosis of Pulmonary Tuberculosis in a Low Prevalence Setting: A Prospective Intervention Study.
    J Clin Microbiol. 2018 Mar 14. pii: JCM.00116-18. doi: 10.1128/JCM.00116.
    PubMed     Text format     Abstract available


  70. MIOTTO P, Cabibbe AM, Borroni E, Degano M, et al
    Role of disputed mutations in the rpoB gene in the interpretation of automated liquid MGIT culture results for rifampicin susceptibility testing of Mycobacterium tuberculosis.
    J Clin Microbiol. 2018 Mar 14. pii: JCM.01599-17. doi: 10.1128/JCM.01599.
    PubMed     Text format     Abstract available


  71. NACCACHE SN, Lustestica M, Fahit M, Mestas J, et al
    One year in the life of a rapid syndromic panel for meningitis/encephalitis: a pediatric tertiary care facility's experience.
    J Clin Microbiol. 2018 Mar 14. pii: JCM.01940-17. doi: 10.1128/JCM.01940.
    PubMed     Text format     Abstract available


  72. MANINGI NE, Daum LT, Rodriguez JD, Said HM, et al
    Multi- and Extensively-Drug Resistant Mycobacterium tuberculosis in South Africa: A Molecular Analysis of Historical Isolates.
    J Clin Microbiol. 2018 Mar 7. pii: JCM.01214-17. doi: 10.1128/JCM.01214.
    PubMed     Text format     Abstract available


    February 2018
  73. SNAYD M, Dias F, Ryan RW, Clout D, et al
    The misidentification of Candida auris using RapID Yeast Plus, a commercial, biochemical enzyme-based manual rapid identification system.
    J Clin Microbiol. 2018 Feb 28. pii: JCM.00080-18. doi: 10.1128/JCM.00080.
    PubMed     Text format     Abstract available


  74. YAMAGUCHI T, Kawahara R, Katsukawa C, Kanki M, et al
    Food-Borne Outbreak of Group G Streptococcal Pharyngitis in a School Dormitory in Osaka, Japan.
    J Clin Microbiol. 2018 Feb 28. pii: JCM.01884-17. doi: 10.1128/JCM.01884.
    PubMed     Text format     Abstract available


  75. CHANG B, Morita M, Lee KI, Ohnishi M, et al
    Whole-genome sequence analysis of Streptococcus pneumoniae strains that cause hospital-acquired pneumonia infections.
    J Clin Microbiol. 2018 Feb 14. pii: JCM.01822-17. doi: 10.1128/JCM.01822.
    PubMed     Text format     Abstract available


  76. FALCI DR, Pasqualotto AC, Nucci M, Monteiro AA, et al
    Low sensitivity of Lateral Flow Device-Aspergillus in patients with probable and proven aspergillosis: results from a multicentre evaluation.
    J Clin Microbiol. 2018 Feb 14. pii: JCM.01864-17. doi: 10.1128/JCM.01864.
    PubMed     Text format     Abstract available


  77. BARR DA, Kerkhoff AD, Schutz C, Ward AM, et al
    HIV-associated M. tuberculosis blood stream infection is under-diagnosed by a single blood culture.
    J Clin Microbiol. 2018 Feb 14. pii: JCM.01914-17. doi: 10.1128/JCM.01914.
    PubMed     Text format     Abstract available


  78. LIESMAN RM, Strasburg AP, Heitman AK, Theel ES, et al
    Evaluation of a Commercial Multiplex Molecular Panel For the Diagnosis of Infectious Meningitis and Encephalitis.
    J Clin Microbiol. 2018 Feb 7. pii: JCM.01927-17. doi: 10.1128/JCM.01927.
    PubMed     Text format     Abstract available


  79. CASTANHEIRA M
    Fungemia Surveillance in Denmark Demonstrates Emergence of Candida non-albicans, Higher Antifungal Usage and Resistance Rates When Compared to Other Nations.
    J Clin Microbiol. 2018 Feb 7. pii: JCM.01907-17. doi: 10.1128/JCM.01907.
    PubMed     Text format     Abstract available


  80. LAINHART W, Yarbrough ML, Burnham CA
    Closing the Brief Case: Staphylococcus intermedius Group-Look What the Dog Dragged In.
    J Clin Microbiol. 2018;56.
    PubMed     Text format    


  81. LAINHART W, Yarbrough ML, Burnham CA
    The Brief Case: Staphylococcus intermedius Group-Look What the Dog Dragged In.
    J Clin Microbiol. 2018;56.
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    January 2018
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    Rapid, Accurate Identification of Candida auris by Using a Novel MALDI-TOF Database (Library).
    J Clin Microbiol. 2018 Jan 24. pii: JCM.01700-17. doi: 10.1128/JCM.01700.
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  83. BARD JD, Alby K
    Point-Counterpoint: Meningitis/encephalitis syndromic testing in the Clinical Laboratory.
    J Clin Microbiol. 2018 Jan 17. pii: JCM.00018-18. doi: 10.1128/JCM.00018.
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  84. YARBROUGH ML, Lainhart W, Burnham CA
    Epidemiology, Clinical Characteristics, and Antimicrobial Susceptibility Profiles of Human Clinical Isolates of Staphylococcus intermedius Group.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01788-17. doi: 10.1128/JCM.01788.
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  85. CHURCH DL, Lloyd T, Larios O, Gregson DB, et al
    Evaluation of Simplexa Group A Strep Direct Kit compared to Hologic(R) Group A streptococcal direct assay for detection of Group A Streptococcus (GAS) in throat swabs.
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  86. LINGER Y, Knickerbocker C, Sipes D, Golova J, et al
    Genotyping Multi-Drug Resistant M. tuberculosis from Primary Sputum and Decontaminated Sediment with an Integrated Microfluidic Amplification Microarray.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01652-17. doi: 10.1128/JCM.01652.
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  87. BERRY GJ, Miller CR, Moreno Prats M, Marquez C, et al
    Comparison of the Alere i and BD Veritor in the detection of Group A Streptococcus and the hypothetical impact of results on antibiotic utilization.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01310-17. doi: 10.1128/JCM.01310.
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  88. THERON G, Venter R, Smith L, Esmail A, et al
    False positive Xpert MTB/RIF results in re-tested patients with previous tuberculosis: frequency, profile, and prospective clinical outcomes.
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    December 2017
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    Genome-based analysis of Enterococcus faecium bacteremia associated with recurrent and mixed strain infection.
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  90. WAGNER K, Springer B, Pires VP, Keller PM, et al
    Pathogen identification by multiplex Lightmix(R) RT-PCR in patients with meningitis and culture-negative cerebrospinal fluid.
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  91. HAVLICEK J, Dachsel B, Slickers P, Andres S, et al
    Rapid Microarray-based Detection of Rifampicin-, Isoniazid- and Fluoroquinolone Resistance in Mycobacterium tuberculosis using a Single Cartridge.
    J Clin Microbiol. 2017 Dec 6. pii: JCM.01249-17. doi: 10.1128/JCM.01249.
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    November 2017
  92. HUSE HK, Miller SA, Chandrasekaran S, Hindler JA, et al
    Clinical and Laboratory Standards Institute (CLSI) Evaluation of Oxacillin and Cefoxitin Disk Diffusion and Minimum Inhibitory Concentration Breakpoints for Detection of mecA-mediated Oxacillin Resistance in Staphylococcus schleiferi.
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  93. SPRINGER J, White PL, Kessel J, Wieters I, et al
    A Comparison of Aspergillus and Mucorales PCR Testing of Different BAL Fractions from Patients with Suspected Invasive Pulmonary Fungal Disease.
    J Clin Microbiol. 2017 Nov 29. pii: JCM.01655-17. doi: 10.1128/JCM.01655.
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  94. LEACH L, Zhu Y, Chaturvedi S
    Development and validation of a real-time PCR assay for rapid detection of Candida auris from surveillance samples.
    J Clin Microbiol. 2017 Nov 29. pii: JCM.01223-17. doi: 10.1128/JCM.01223.
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  95. SPIVAK ES, Hanson KE
    Candida auris: An Emerging Fungal Pathogen.
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  96. JAJOU R, de Neeling A, Rasmussen EM, Norman A, et al
    A predominant VNTR cluster of Mycobacterium tuberculosis isolates among asylum seekers in the Netherlands and Denmark deciphered by whole genome sequencing.
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    PubMed     Text format     Abstract available


  97. JAJOU R, Kamst M, van Hunen R, de Zwaan CC, et al
    The occurrence and nature of double alleles in VNTR patterns of more than 8,000 Mycobacterium tuberculosis complex isolates in The Netherlands.
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  98. LOMBARDI G, Petrucci R, Corsini I, Bacchi Reggiani ML, et al
    Quantitative analysis of interferon-gamma release assay response in children with latent and active tuberculosis.
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  99. MOKROUSOV I, Chernyaeva E, Vyazovaya A, Skiba Y, et al
    A rapid assay for detection of the epidemiologically important Central Asian/Russian strain of the Mycobacterium tuberculosis Beijing genotype.
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  100. LIANG B, Tan Y, Li Z, Tian X, et al
    Highly Sensitive Detection of Isoniazid Heteroresistance in Mycobacterium tuberculosis by DeepMelt Assay.
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  101. WHITE PL, Parr C, Barnes RA
    Predicting invasive aspergillosis in haematology patients by combining clinical and genetic risk factors with early diagnostic biomarkers.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01122-17. doi: 10.1128/JCM.01122.
    PubMed     Text format     Abstract available


  102. NDLANGISA K, du Plessis M, Allam M, Wolter N, et al
    Invasive disease caused simultaneously by dual serotypes of Streptococcus pneumoniae.
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  103. YARBROUGH ML, Warren DK, Allen K, Burkholder D, et al
    Multicenter evaluation of the Xpert MRSA NxG Assay for detection of methicillin resistant Staphylococcus aureus in nasal swabs.
    J Clin Microbiol. 2017 Nov 8. pii: JCM.01381-17. doi: 10.1128/JCM.01381.
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  104. KANJILAL S, Sater MRA, Thayer M, Lagoudas GK, et al
    Trends in antibiotic susceptibility in Staphylococcus aureus in Boston, Massachusetts, 2000-2014.
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  105. YARBROUGH ML, Hamad Y, Burnham CA, George IA, et al
    Closing the Brief Case: Bacteremia and Vertebral Osteomyelitis Due to Staphylococcus schleiferi.
    J Clin Microbiol. 2017;55:3309-3310.
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  106. YARBROUGH ML, Hamad Y, Burnham CA, George IA, et al
    The Brief Case: Bacteremia and Vertebral Osteomyelitis Due to Staphylococcus schleiferi.
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    PubMed     Text format    


    October 2017
  107. MURASE Y, Izumi K, Ohkado A, Aono A, et al
    Prediction of Local Transmission of Mycobacterium tuberculosis Isolates of a Predominantly Beijing Lineage Using a Variable-Number Tandem Repeat (VNTR) Typing Method Incorporating a Consensus Set of Hypervariable Loci.
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  108. AO W, Klonoski J, Berlinghoff E, Jensen J, et al
    Rapid Detection and Differentiation of Clinically Relevant Candida Species Simultaneously from Blood Culture Using A Novel Signal Amplification Approach.
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  109. KRIEGESKORTE A, Idelevich EA, Schlattmann A, Layer F, et al
    Comparison of Different Phenotypic Approaches to Screen and Detect mecC-Harboring Methicillin-Resistant Staphylococcus aureus.
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    PubMed     Text format     Abstract available


  110. PRASIDTHRATHSINT K, Lewis J, Couturier MR
    Closing the Brief Case: Angiostrongylus cantonensis Eosinophilic Meningitis in a Returned Traveler.
    J Clin Microbiol. 2017;55:3147-3148.
    PubMed     Text format    


  111. PRASIDTHRATHSINT K, Lewis J, Couturier MR
    The Brief Case: Angiostrongylus cantonensis Eosinophilic Meningitis in a Returned Traveler.
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    PubMed     Text format    


    September 2017
  112. MACHOWSKI EE, Kana BD
    Genetic mimetics of Mycobacterium tuberculosis and methicillin resistant Staphylococcus aureus as verification standards for molecular diagnostics.
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  113. KOLENDA C, Dupieux C, Decousser JW, Larsen AR, et al
    Comparison of automated antimicrobial susceptibility testing systems to detect mecC-positive methicillin-resistant Staphylococcus aureus.
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  114. WALTERS E, Demers AM, van der Zalm MM, Whitelaw A, et al
    Stool culture for the diagnosis of pulmonary tuberculosis in children.
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  115. LOCKHART SR, Jackson BR, Vallabhaneni S, Ostrosky-Zeichner L, et al
    Thinking beyond the common Candida species: Need for speciation of Candida due to the emergence of multidrug resistant Candida auris.
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  116. MUSTAZZOLU A, Iacobino A, Giannoni F, Piersimoni C, et al
    Improved Bactec MGIT 960 Pyrazinamide Test Decreases Detection of False Mycobacterium tuberculosis Pyrazinamide Resistance.
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  117. ROSENTHAL A, Gabrielian A, Engle E, Hurt DE, et al
    The TB Portals: An open-access, web-based platform for global drug-resistant tuberculosis data sharing and analysis.
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  118. ORTIZ DA, Loeffelholz MJ
    Evaluation of the Lumipulse(R) G TP-N Chemiluminescent Immunoassay as a Syphilis Screening Test.
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    August 2017
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    French prospective clinical evaluation of the Aptima(R) Mycoplasma genitalium assay (CE-IVD) and macrolide resistance detection using three distinct assays.
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  120. GHEBREMEDHIN M, Heitkamp R, Yesupriya S, Clay B, et al
    Accurate and Rapid Differentiation of Acinetobacter baumannii Strains by Raman Spectroscopy: a Comparative Study.
    J Clin Microbiol. 2017;55:2480-2490.
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  121. KOZYREVA VK, Truong CL, Greninger AL, Crandall J, et al
    Validation and Implementation of Clinical Laboratory Improvements Act-Compliant Whole-Genome Sequencing in the Public Health Microbiology Laboratory.
    J Clin Microbiol. 2017;55:2502-2520.
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  122. FRASER M, Borman AM, Johnson EM
    Rapid and Robust Identification of the Agents of Black-Grain Mycetoma by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.
    J Clin Microbiol. 2017;55:2521-2528.
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  123. DUBBELS M, Granger D, Theel ES
    Low Cryptococcus Antigen Titers as Determined by Lateral Flow Assay Should Be Interpreted Cautiously in Patients without Prior Diagnosis of Cryptococcal Infection.
    J Clin Microbiol. 2017;55:2472-2479.
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  124. SNYDER JL, Giese H, Bandoski-Gralinski C, Townsend J, et al
    T2 Magnetic Resonance Assay-Based Direct Detection of Three Lyme Disease-Related Borrelia Species in Whole-Blood Samples.
    J Clin Microbiol. 2017;55:2453-2461.
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  125. KOZEL TR, Burnham-Marusich AR
    Point-of-Care Testing for Infectious Diseases: Past, Present, and Future.
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  126. BIDET P, Tran Quang V, Yagusky P, Birgy A, et al
    Investigation of Kingella kingae Invasive Infection Outbreaks in Day Care Facilities: Assessment of a Rapid Genotyping Tool Targeting the DNA Uptake Sequence.
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  127. JACOBS MR, Mazzulli T, Hazen KC, Good CE, et al
    Multicenter Clinical Evaluation of BacT/Alert Virtuo Blood Culture System.
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  128. DE ALMEIDA JN JR, Favero Gimenes VM, Francisco EC, Machado Siqueira LP, et al
    Evaluating and Improving Vitek MS for Identification of Clinically Relevant Species of Trichosporon and the Closely Related Genera Cutaneotrichosporon and Apiotrichum.
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  129. BOSCH T, Lutgens SPM, Hermans MHA, Wever PC, et al
    Outbreak of NDM-1-Producing Klebsiella pneumoniae in a Dutch Hospital, with Interspecies Transfer of the Resistance Plasmid and Unexpected Occurrence in Unrelated Health Care Centers.
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  130. STREET TL, Sanderson ND, Atkins BL, Brent AJ, et al
    Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid by Metagenomic Sequencing.
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    July 2017
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    Advances Afoot in Microbiology.
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  132. ESAIASSEN E, Hjerde E, Cavanagh JP, Simonsen GS, et al
    Bifidobacterium Bacteremia: Clinical Characteristics and a Genomic Approach To Assess Pathogenicity.
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  133. MARSCHAL M, Bachmaier J, Autenrieth I, Oberhettinger P, et al
    Evaluation of the Accelerate Pheno System for Fast Identification and Antimicrobial Susceptibility Testing from Positive Blood Cultures in Bloodstream Infections Caused by Gram-Negative Pathogens.
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  134. EDWARDS BD, Greysson-Wong J, Somayaji R, Waddell B, et al
    Prevalence and Outcomes of Achromobacter Species Infections in Adults with Cystic Fibrosis: a North American Cohort Study.
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    June 2017
  135. RAMOS JT, Villar S, Bouza E, Bergon-Sendin E, et al
    Performance of a Quantitative PCR-Based Assay and Beta-D-Glucan Detection for the Diagnosis of Invasive Candidiasis in Very Low Birth Weight Preterm Neonatal Patients (CANDINEO Study).
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    May 2017
  136. BECKMAN E, Saracino I, Fiorini G, Clark C, et al
    A Novel stool PCR Test for Helicobacter pylori may Predict Clarithromycin Resistance and Patient Eradication at a High Rate.
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  137. MOORE NM, Canton R, Carretto E, Peterson LR, et al
    Rapid Identification of Five Classes of Carbapenem-Resistance Genes Directly from Rectal Swabs using the Xpert(R) Carba-R Assay.
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