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COVID-19: Daily Top 10 Papers


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Articles published in J Clin Microbiol

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    February 2021
  1. DIFRANZA LT, Annavajhala MK, Uhlemann AC, Green DA, et al
    Closing The Brief Case: A Maggot Mystery-Ignatzschineria larvae Sepsis Secondary to an Infested Wound.
    J Clin Microbiol. 2021;59.

  2. DIFRANZA LT, Annavajhala MK, Uhlemann AC, Green DA, et al
    The Brief Case: A Maggot Mystery-Ignatzschineria larvae Sepsis Secondary to an Infested Wound.
    J Clin Microbiol. 2021;59.

    July 2020
  3. SEPULVEDA J, Westblade LF, Whittier S, Satlin MJ, et al
    Bacteremia and Blood Culture Utilization during COVID-19 Surge in New York City.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available

  4. STRALIN K, Rothman RE, Ozenci V, Barkataki K, et al
    Performance of PCR/electrospray ionization-mass spectrometry on whole blood for detection of bloodstream microorganisms in patients with suspected sepsis.
    J Clin Microbiol. 2020 Jul 8. pii: JCM.01860-19. doi: 10.1128/JCM.01860.
    PubMed     Abstract available

    April 2020
  5. DOWNES KJ, Fitzgerald JC, Weiss SL
    Utility of Procalcitonin as a Biomarker for Sepsis in Children.
    J Clin Microbiol. 2020 Apr 29. pii: JCM.01851-19. doi: 10.1128/JCM.01851.
    PubMed     Abstract available

    January 2020
  6. THWE PM, Ortiz DA, Wankewicz AL, Hornak JP, et al
    The Brief Case: Recurrent Chromobacterium violaceum Bloodstream Infection in a Glucose-6-Phosphate Dehydrogenase (G6PD)-Deficient Patient with a Severe Neutrophil Defect.
    J Clin Microbiol. 2020;58.

    October 2019
  7. SULLIVAN MJ, Altman DR, Chacko KI, Ciferri B, et al
    A complete genome screening program of clinical methicillin-resistant Staphylococcus aureus isolates identifies the origin and progression of a neonatal intensive care unit outbreak.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01261-19. doi: 10.1128/JCM.01261.
    PubMed     Abstract available

    June 2019
  8. NGUYEN AT, Nguyen HTT, Le NNT, Tran TT, et al
    Viruses in Vietnamese patients presenting with community acquired sepsis of unknown cause.
    J Clin Microbiol. 2019 Jun 19. pii: JCM.00386-19. doi: 10.1128/JCM.00386.
    PubMed     Abstract available

    May 2019
  9. O'DEA M, Sahibzada S, Jordan D, Laird T, et al
    Genomic, antimicrobial resistance and public health insights into Enterococcus spp. from Australian chickens.
    J Clin Microbiol. 2019 May 22. pii: JCM.00319-19. doi: 10.1128/JCM.00319.
    PubMed     Abstract available

  10. GUNSOLUS IL, Sweeney TE, Liesenfeld O, Ledeboer NA, et al
    Diagnosing and Managing Sepsis by Probing the Host Response to Infection: Advances, Opportunities, and Challenges.
    J Clin Microbiol. 2019 May 1. pii: JCM.00425-19. doi: 10.1128/JCM.00425.
    PubMed     Abstract available

    March 2019
  11. MACFADDEN DR, Melano RG, Coburn B, Tijet N, et al
    Comparing Patient Risk Factors, Sequence Type, and Resistance Loci Identification Approaches for Predicting Antibiotic Resistance in Escherichia coli Bloodstream Infections.
    J Clin Microbiol. 2019 Mar 20. pii: JCM.01780-18. doi: 10.1128/JCM.01780.
    PubMed     Abstract available

  12. TOSIANO MA, Jacobs JL, Shutt KA, Cyktor JC, et al
    A Simpler and More Sensitive Single-Copy HIV-1 RNA Assay for Quantification of Persistent HIV-1 Viremia in Individuals on Suppressive Antiretroviral Therapy.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

    February 2019
    The Brief Case: Meningococcemia Leading to a Diagnosis of Complement Deficiency in a 23-Month-Old.
    J Clin Microbiol. 2019;57.

  14. HUANG TD, Melnik E, Bogaerts P, Evrard S, et al
    Evaluation of the ePlex Blood Culture Identification Panels for Detection of Pathogens in Bloodstream Infections.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

    January 2019
  15. KATIYO S, Muller-Pebody B, Minaji M, Powell D, et al
    Epidemiology and Outcomes of Nontyphoidal Salmonella Bacteremias from England, 2004 to 2015.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

    July 2018
  16. VATANSHENASSAN M, Boekhout T, Lass-Florl C, Lackner M, et al
    MBT ASTRA: Proof-of-concept for a rapid MALDI-TOF MS based method to detect caspofungin resistance in Candida albicans and Candida glabrata.
    J Clin Microbiol. 2018 Jul 18. pii: JCM.00420-18. doi: 10.1128/JCM.00420.
    PubMed     Abstract available

  17. DIALLO K, Ferrand J, Goehringer F, Selton-Suty C, et al
    The Brief Case: An Unusual Cause of Infective Endocarditis after a Urological Procedure.
    J Clin Microbiol. 2018;56.

    June 2018
  18. BEYDA ND, Amadio J, Rodriguez JR, Malinowski K, et al
    In vitro evaluation of BacT/Alert FA blood culture bottles and T2Candida assay for the detection of Candida in the presence of antifungals.
    J Clin Microbiol. 2018 Jun 13. pii: JCM.00471-18. doi: 10.1128/JCM.00471.
    PubMed     Abstract available

  19. LANDIER J, Haohankhunnatham W, Das S, Konghahong K, et al
    Operational performance of a Plasmodium falciparum ultrasensitive rapid diagnostic test for the detection of asymptomatic infections in Eastern Myanmar.
    J Clin Microbiol. 2018 Jun 13. pii: JCM.00565-18. doi: 10.1128/JCM.00565.
    PubMed     Abstract available

    May 2018
  20. ESCRIBANO P, Sanchez-Carrillo C, Munoz P, Bouza E, et al
    Reduction in the percentage of clusters of Candida albicans and Candida parapsilosis causing candidemia in a general hospital in Madrid, Spain.
    J Clin Microbiol. 2018 May 9. pii: JCM.00574-18. doi: 10.1128/JCM.00574.
    PubMed     Abstract available

  21. DRUMMOND MR, Lania BG, Diniz PPVP, Gilioli R, et al
    Improvement of Bartonella henselae DNA Detection in Cat Blood Samples by Combining Molecular and Culture Methods.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available

    April 2018
  22. RAMOS R, Caceres DH, Perez M, Garcia N, et al
    Emerging multidrug-resistant Candida duobushaemulonii infections in Panama hospitals: importance of laboratory surveillance and accurate identification.
    J Clin Microbiol. 2018 Apr 25. pii: JCM.00371-18. doi: 10.1128/JCM.00371.
    PubMed     Abstract available

  23. LUTGRING JD, Bittencourt C, McElvania TeKippe E, Cavuoti D, et al
    Evaluation of the Accelerate Pheno System: Results from Two Academic Medical Centers.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available

  24. ASTVAD KMT, Johansen HK, Roder BL, Rosenvinge FS, et al
    Update from a 12-Year Nationwide Fungemia Surveillance: Increasing Intrinsic and Acquired Resistance Causes Concern.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available

  25. MYLONAKIS E, Zacharioudakis IM, Clancy CJ, Nguyen MH, et al
    Efficacy of T2 Magnetic Resonance Assay in Monitoring Candidemia after Initiation of Antifungal Therapy: the Serial Therapeutic and Antifungal Monitoring Protocol (STAMP) Trial.
    J Clin Microbiol. 2018;56.
    PubMed     Abstract available

    February 2018
  26. BARR DA, Kerkhoff AD, Schutz C, Ward AM, et al
    HIV-associated M. tuberculosis blood stream infection is under-diagnosed by a single blood culture.
    J Clin Microbiol. 2018 Feb 14. pii: JCM.01914-17. doi: 10.1128/JCM.01914.
    PubMed     Abstract available

    Fungemia Surveillance in Denmark Demonstrates Emergence of Candida non-albicans, Higher Antifungal Usage and Resistance Rates When Compared to Other Nations.
    J Clin Microbiol. 2018 Feb 7. pii: JCM.01907-17. doi: 10.1128/JCM.01907.
    PubMed     Abstract available

    January 2018
  28. CHIEREGHIN A, Potena L, Borgese L, Gibertoni D, et al
    Monitoring of CMV-specific cell-mediated immunity in heart transplant recipients: clinical utility of the QuantiFERON(R)-CMV assay for the management of post-transplant CMV infection.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01040-17. doi: 10.1128/JCM.01040.
    PubMed     Abstract available

  29. YARBROUGH ML, Lainhart W, Burnham CA
    Epidemiology, Clinical Characteristics, and Antimicrobial Susceptibility Profiles of Human Clinical Isolates of Staphylococcus intermedius Group.
    J Clin Microbiol. 2018 Jan 5. pii: JCM.01788-17. doi: 10.1128/JCM.01788.
    PubMed     Abstract available

    December 2017
  30. RAVEN KE, Gouliouris T, Parkhill J, Peacock SJ, et al
    Genome-based analysis of Enterococcus faecium bacteremia associated with recurrent and mixed strain infection.
    J Clin Microbiol. 2017 Dec 20. pii: JCM.01520-17. doi: 10.1128/JCM.01520.
    PubMed     Abstract available

    November 2017
  31. YARBROUGH ML, Hamad Y, Burnham CA, George IA, et al
    The Brief Case: Bacteremia and Vertebral Osteomyelitis Due to Staphylococcus schleiferi.
    J Clin Microbiol. 2017;55:3157-3161.

    October 2017
  32. AO W, Klonoski J, Berlinghoff E, Jensen J, et al
    Rapid Detection and Differentiation of Clinically Relevant Candida Species Simultaneously from Blood Culture Using A Novel Signal Amplification Approach.
    J Clin Microbiol. 2017 Oct 18. pii: JCM.00982-17. doi: 10.1128/JCM.00982.
    PubMed     Abstract available

    August 2017
  33. SHAN C, Ortiz DA, Yang Y, Wong SJ, et al
    Evaluation of a Novel Reporter Virus Neutralization Test for the Serological Diagnosis of Zika and Dengue Virus Infection.
    J Clin Microbiol. 2017 Aug 2. pii: JCM.00975-17. doi: 10.1128/JCM.00975.
    PubMed     Abstract available

  34. BIDET P, Tran Quang V, Yagusky P, Birgy A, et al
    Investigation of Kingella kingae Invasive Infection Outbreaks in Day Care Facilities: Assessment of a Rapid Genotyping Tool Targeting the DNA Uptake Sequence.
    J Clin Microbiol. 2017;55:2422-2430.
    PubMed     Abstract available

  35. JACOBS MR, Mazzulli T, Hazen KC, Good CE, et al
    Multicenter Clinical Evaluation of BacT/Alert Virtuo Blood Culture System.
    J Clin Microbiol. 2017;55:2413-2421.
    PubMed     Abstract available

    July 2017
  36. ESAIASSEN E, Hjerde E, Cavanagh JP, Simonsen GS, et al
    Bifidobacterium Bacteremia: Clinical Characteristics and a Genomic Approach To Assess Pathogenicity.
    J Clin Microbiol. 2017;55:2234-2248.
    PubMed     Abstract available

  37. MARSCHAL M, Bachmaier J, Autenrieth I, Oberhettinger P, et al
    Evaluation of the Accelerate Pheno System for Fast Identification and Antimicrobial Susceptibility Testing from Positive Blood Cultures in Bloodstream Infections Caused by Gram-Negative Pathogens.
    J Clin Microbiol. 2017;55:2116-2126.
    PubMed     Abstract available

    May 2017
  38. PLONGLA R, Gilligan PH
    Photo Quiz: Overwhelming Sepsis after Dog Bite in a Splenectomized Woman.
    J Clin Microbiol. 2017;55:1231-1232.

  39. DONNER LM, Campbell WS, Lyden E, Van Schooneveld TC, et al
    Assessment of Rapid-Blood-Culture-Identification Result Interpretation and Antibiotic Prescribing Practices.
    J Clin Microbiol. 2017;55:1496-1507.
    PubMed     Abstract available

  40. BEGANOVIC M, Costello M, Wieczorkiewicz SM
    Effect of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) Alone versus MALDI-TOF MS Combined with Real-Time Antimicrobial Stewardship Interventions on Time to Optimal Antimicrobial Therapy in Patients with P
    J Clin Microbiol. 2017;55:1437-1445.
    PubMed     Abstract available

    January 2017
  41. IDELEVICH EA, Grunastel B, Becker K
    Rapid Detection and Identification of Candidemia by Direct Blood Culturing on Solid Medium by Use of Lysis-Centrifugation Method Combined with Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS).
    J Clin Microbiol. 2016;55:97-100.
    PubMed     Abstract available

  42. PATEL TS, Kaakeh R, Nagel JL, Newton DW, et al
    Cost Analysis of Implementing Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Plus Real-Time Antimicrobial Stewardship Intervention for Bloodstream Infections.
    J Clin Microbiol. 2016;55:60-67.
    PubMed     Abstract available

    August 2016
  43. MOROZUMI M, Wajima T, Takata M, Iwata S, et al
    Molecular characteristics of Group B streptococci isolated from adults with invasive infections in Japan.
    J Clin Microbiol. 2016 Aug 24. pii: JCM.01183.
    PubMed     Abstract available

    April 2016
  44. ALTUN O, Almuhayawi M, Luthje P, Taha R, et al
    Controlled Evaluation of the New BacT/Alert Virtuo Blood Culture System for Detection and Time to Detection of Bacteria and Yeasts.
    J Clin Microbiol. 2016;54:1148-51.
    PubMed     Abstract available

  45. JEFFERY-SMITH A, Nic-Fhogartaigh C, Millar M
    Is the Presence of Actinomyces spp. in Blood Culture Always Significant?
    J Clin Microbiol. 2016;54:1137-9.
    PubMed     Abstract available

    March 2016
  46. WALKER B, Powers-Fletcher MV, Schmidt RL, Hanson KE, et al
    Cost-Effectiveness Analysis of Multiplex PCR with Magnetic Resonance Detection versus Empiric or Blood Culture-Directed Therapy for Management of Suspected Candidemia.
    J Clin Microbiol. 2016;54:718-26.
    PubMed     Abstract available

  47. SALIMNIA H, Fairfax MR, Lephart PR, Schreckenberger P, et al
    Evaluation of the FilmArray Blood Culture Identification Panel: Results of a Multicenter Controlled Trial.
    J Clin Microbiol. 2016;54:687-98.
    PubMed     Abstract available

  48. FITZPATRICK MA, Ozer EA, Hauser AR
    Utility of Whole-Genome Sequencing in Characterizing Acinetobacter Epidemiology and Analyzing Hospital Outbreaks.
    J Clin Microbiol. 2016;54:593-612.
    PubMed     Abstract available

  49. FIORI B, D'Inzeo T, Giaquinto A, Menchinelli G, et al
    Optimized Use of the MALDI BioTyper System and the FilmArray BCID Panel for Direct Identification of Microbial Pathogens from Positive Blood Cultures.
    J Clin Microbiol. 2016;54:576-84.
    PubMed     Abstract available

    January 2016
  50. SPRINGER J, White PL, Hamilton S, Michael D, et al
    A comparison of the performance of Aspergillus PCR when testing a range of blood based samples in accordance with international methodological recommendations.
    J Clin Microbiol. 2016 Jan 6. pii: JCM.02814.
    PubMed     Abstract available

  51. SUWANTARAT N, Romagnoli M, Carroll KC
    Photo Quiz: Isolation of an Unusual Gram-Positive Coccus from a Positive Blood Culture in a Patient with Pneumonia. Actinomyces radicidentis Bacteremia.
    J Clin Microbiol. 2016;54:1.

  52. MOORE MS, McCarroll MG, McCann CD, May L, et al
    Direct Screening of Blood by PCR and Pyrosequencing for a 16S rRNA Gene Target from Emergency Department and Intensive Care Unit Patients Being Evaluated for Bloodstream Infection.
    J Clin Microbiol. 2016;54:99-105.
    PubMed     Abstract available

  53. CHERUVANKY A, Kirn TJ, Weinstein MP
    Cost-Effectiveness of 30- Compared to 20-Milliliter Blood Cultures: a Retrospective Study.
    J Clin Microbiol. 2016;54:64-7.
    PubMed     Abstract available

    October 2015
  54. VON KIETZELL M, Richter H, Bruderer T, Goldenberger D, et al
    Meningitis and bacteremia due to Neisseria cinerea following a percutaneous rhizotomy of the trigeminal ganglion.
    J Clin Microbiol. 2015 Oct 28. pii: JCM.02041.
    PubMed     Abstract available

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