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Articles published in PLoS Comput Biol

Retrieve available abstracts of 23 articles:
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Single Articles


    October 2022
  1. LALANI Z, Chu G, Hsu S, Kagawa S, et al
    CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data.
    PLoS Comput Biol. 2022;18:e1010614.
    PubMed     Abstract available


    September 2022
  2. TERNES L, Lin JR, Chen YA, Gray JW, et al
    Computational multiplex panel reduction to maximize information retention in breast cancer tissue microarrays.
    PLoS Comput Biol. 2022;18:e1010505.
    PubMed     Abstract available


  3. MASSI MC, Dominoni L, Ieva F, Fiorito G, et al
    A Deep Survival EWAS approach estimating risk profile based on pre-diagnostic DNA methylation: An application to breast cancer time to diagnosis.
    PLoS Comput Biol. 2022;18:e1009959.
    PubMed     Abstract available


  4. SHMAROV F, Smith GR, Weatherhead SC, Reynolds NJ, et al
    Individualised computational modelling of immune mediated disease onset, flare and clearance in psoriasis.
    PLoS Comput Biol. 2022;18:e1010267.
    PubMed     Abstract available


    June 2022
  5. JANSEN JE, Aschenbrenner D, Uhlig HH, Coles MC, et al
    A method for the inference of cytokine interaction networks.
    PLoS Comput Biol. 2022;18:e1010112.
    PubMed     Abstract available


    April 2022
  6. LEE D, Wang D, Yang XR, Shi J, et al
    SUITOR: Selecting the number of mutational signatures through cross-validation.
    PLoS Comput Biol. 2022;18:e1009309.
    PubMed     Abstract available


    March 2022
  7. HOWARD GR, Jost TA, Yankeelov TE, Brock A, et al
    Quantification of long-term doxorubicin response dynamics in breast cancer cell lines to direct treatment schedules.
    PLoS Comput Biol. 2022;18:e1009104.
    PubMed     Abstract available


  8. JEUKEN GS, Tobin NP, Kall L
    Survival analysis of pathway activity as a prognostic determinant in breast cancer.
    PLoS Comput Biol. 2022;18:e1010020.
    PubMed     Abstract available


  9. MOHAMMAD MIRZAEI N, Changizi N, Asadpoure A, Su S, et al
    Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model.
    PLoS Comput Biol. 2022;18:e1009953.
    PubMed     Abstract available


  10. YAO K, Schaafsma E, Zhang B, Cheng C, et al
    Tumor cell intrinsic and extrinsic features predict prognosis in estrogen receptor positive breast cancer.
    PLoS Comput Biol. 2022;18:e1009495.
    PubMed     Abstract available


    February 2022
  11. DI FILIPPO M, Pescini D, Galuzzi BG, Bonanomi M, et al
    INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation.
    PLoS Comput Biol. 2022;18:e1009337.
    PubMed     Abstract available


    November 2021
  12. LIMA EABF, Faghihi D, Philley R, Yang J, et al
    Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth.
    PLoS Comput Biol. 2021;17:e1008845.
    PubMed     Abstract available


  13. MADSSEN TS, Giskeodegard GF, Smilde AK, Westerhuis JA, et al
    Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data.
    PLoS Comput Biol. 2021;17:e1009585.
    PubMed     Abstract available


    September 2021
  14. LEE HG, Lee KJ
    Neighbor-enhanced diffusivity in dense, cohesive cell populations.
    PLoS Comput Biol. 2021;17:e1009447.
    PubMed     Abstract available


  15. TRINCADO JL, Reixachs-Sole M, Perez-Granado J, Fugmann T, et al
    ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer.
    PLoS Comput Biol. 2021;17:e1009411.
    PubMed     Abstract available


  16. GRANDE GUTIERREZ N, Alber M, Kahn AM, Burns JC, et al
    Computational modeling of blood component transport related to coronary artery thrombosis in Kawasaki disease.
    PLoS Comput Biol. 2021;17:e1009331.
    PubMed     Abstract available


    July 2021
  17. ROZOVA VS, Anwer AG, Guller AE, Es HA, et al
    Machine learning reveals mesenchymal breast carcinoma cell adaptation in response to matrix stiffness.
    PLoS Comput Biol. 2021;17:e1009193.
    PubMed     Abstract available


  18. ZHU K, Cai L, Cui C, de Los Toyos JR, et al
    Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts.
    PLoS Comput Biol. 2021;17:e1009228.
    PubMed     Abstract available


    June 2021
  19. ERDEM C, Lee AV, Taylor DL, Lezon TR, et al
    Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells.
    PLoS Comput Biol. 2021;17:e1009125.
    PubMed     Abstract available


  20. TRENTHAM-DIETZ A, Alagoz O, Chapman C, Huang X, et al
    Reflecting on 20 years of breast cancer modeling in CISNET: Recommendations for future cancer systems modeling efforts.
    PLoS Comput Biol. 2021;17:e1009020.
    PubMed     Abstract available


  21. HELLSTERN M, Ma J, Yue K, Shojaie A, et al
    netgsa: Fast computation and interactive visualization for topology-based pathway enrichment analysis.
    PLoS Comput Biol. 2021;17:e1008979.
    PubMed     Abstract available


  22. LAL A, Liu K, Tibshirani R, Sidow A, et al
    De novo mutational signature discovery in tumor genomes using SparseSignatures.
    PLoS Comput Biol. 2021;17:e1009119.
    PubMed     Abstract available


  23. DEUTSCH A, Nava-Sedeno JM, Syga S, Hatzikirou H, et al
    BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration.
    PLoS Comput Biol. 2021;17:e1009066.
    PubMed     Abstract available


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