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  Genetics

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18.09.2017

12 BMC Genet
1 J Neurol Neurosurg Psychiatry
1 JAMA
1 Nat Rev Cancer
2 Nature
3 PLoS Comput Biol
1 PLoS Genet
29 PLoS One


  Retrieve available abstracts of this week’s articles:
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Single Articles


    BMC Genet

  1. PICCOLI ML, Brito LF, Braccini J, Cardoso FF, et al
    Genomic predictions for economically important traits in Brazilian Braford and Hereford beef cattle using true and imputed genotypes.
    BMC Genet. 2017;18:2.
    PubMed     Text format     Abstract available

  2. BRITO LF, Clarke SM, McEwan JC, Miller SP, et al
    Prediction of genomic breeding values for growth, carcass and meat quality traits in a multi-breed sheep population using a HD SNP chip.
    BMC Genet. 2017;18:7.
    PubMed     Text format     Abstract available

  3. KOSKINEN LL, Seppala EH, Weissl J, Jokinen TS, et al
    ADAM23 is a common risk gene for canine idiopathic epilepsy.
    BMC Genet. 2017;18:8.
    PubMed     Text format     Abstract available

  4. TAYE M, Kim J, Yoon SH, Lee W, et al
    Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef.
    BMC Genet. 2017;18:11.
    PubMed     Text format     Abstract available

  5. PETERSEN BS, Fredrich B, Hoeppner MP, Ellinghaus D, et al
    Opportunities and challenges of whole-genome and -exome sequencing.
    BMC Genet. 2017;18:14.
    PubMed     Text format     Abstract available

  6. VERARDO LL, Sevon-Aimonen ML, Serenius T, Hietakangas V, et al
    Whole-genome association analysis of pork meat pH revealed three significant regions and several potential genes in Finnish Yorkshire pigs.
    BMC Genet. 2017;18:13.
    PubMed     Text format     Abstract available

  7. SYMONOVA R, Havelka M, Amemiya CT, Howell WM, et al
    Molecular cytogenetic differentiation of paralogs of Hox paralogs in duplicated and re-diploidized genome of the North American paddlefish (Polyodon spathula).
    BMC Genet. 2017;18:19.
    PubMed     Text format     Abstract available

  8. DIZIER MH, Demenais F, Mathieu F
    Gain of power of the general regression model compared to Cochran-Armitage Trend tests: simulation study and application to bipolar disorder.
    BMC Genet. 2017;18:24.
    PubMed     Text format     Abstract available

  9. LI X, Lund MS, Janss L, Wang C, et al
    The patterns of genomic variances and covariances across genome for milk production traits between Chinese and Nordic Holstein populations.
    BMC Genet. 2017;18:26.
    PubMed     Text format     Abstract available

  10. RAPHAKA K, Matika O, Sanchez-Molano E, Mrode R, et al
    Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle.
    BMC Genet. 2017;18:27.
    PubMed     Text format     Abstract available

  11. YU C, Dong W, Zhan Y, Huang ZA, et al
    Genome-wide identification and expression analysis of ClLAX, ClPIN and ClABCB genes families in Citrullus lanatus under various abiotic stresses and grafting.
    BMC Genet. 2017;18:33.
    PubMed     Text format     Abstract available

  12. HARVEY AC, Fjelldal PG, Solberg MF, Hansen T, et al
    Ploidy elicits a whole-genome dosage effect: growth of triploid Atlantic salmon is linked to the genetic origin of the second maternal chromosome set.
    BMC Genet. 2017;18:34.
    PubMed     Text format     Abstract available


    J Neurol Neurosurg Psychiatry

  13. ZOU ZY, Zhou ZR, Che CH, Liu CY, et al
    Genetic epidemiology of amyotrophic lateral sclerosis: a systematic review and meta-analysis.
    J Neurol Neurosurg Psychiatry. 2017;88:540-549.
    PubMed     Text format     Abstract available


    JAMA

  14. KUEHN BM
    Pilot Programs Seek to Integrate Genomic Data Into Practice.
    JAMA. 2017;318:410-412.
    PubMed     Text format    


    Nat Rev Cancer

  15. BASLAN T, Hicks J
    Unravelling biology and shifting paradigms in cancer with single-cell sequencing.
    Nat Rev Cancer. 2017;17:557-569.
    PubMed     Text format     Abstract available


    Nature

  16. KUMAR S, Gerstein M
    Cancer genomics: Less is more in the hunt for driver mutations.
    Nature. 2017;547:40-41.
    PubMed     Text format    

  17. BAHCALL OG
    Genomics: Sunflowers sequenced.
    Nature. 2017;546:43.
    PubMed     Text format    


    PLoS Comput Biol

  18. FUKUYAMA J, Rumker L, Sankaran K, Jeganathan P, et al
    Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment.
    PLoS Comput Biol. 2017;13:e1005706.
    PubMed     Text format     Abstract available

  19. AMAR D, Shamir R, Yekutieli D
    Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate.
    PLoS Comput Biol. 2017;13:e1005700.
    PubMed     Text format     Abstract available

  20. MONTI R, Barozzi I, Osterwalder M, Lee E, et al
    Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb.
    PLoS Comput Biol. 2017;13:e1005720.
    PubMed     Text format     Abstract available


    PLoS Genet

  21. HOLLFELDER N, Schlebusch CM, Gunther T, Babiker H, et al
    Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations.
    PLoS Genet. 2017;13:e1006976.
    PubMed     Text format     Abstract available


    PLoS One

  22. WILLEMS H, Jacobs A, Hadiwikarta WW, Venken T, et al
    Thermodynamic framework to assess low abundance DNA mutation detection by hybridization.
    PLoS One. 2017;12:e0177384.
    PubMed     Text format     Abstract available

  23. BOHME M, Spassov N, Ebner M, Geraads D, et al
    Messinian age and savannah environment of the possible hominin Graecopithecus from Europe.
    PLoS One. 2017;12:e0177347.
    PubMed     Text format     Abstract available

  24. CHEN YC, Chen KD, Su MC, Chin CH, et al
    Genome-wide gene expression array identifies novel genes related to disease severity and excessive daytime sleepiness in patients with obstructive sleep apnea.
    PLoS One. 2017;12:e0176575.
    PubMed     Text format     Abstract available

  25. PAVA Z, Noviyanti R, Handayuni I, Trimarsanto H, et al
    Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections.
    PLoS One. 2017;12:e0177445.
    PubMed     Text format     Abstract available

  26. RAVIV B, Granot G, Chalifa-Caspi V, Grafi G, et al
    The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.
    PLoS One. 2017;12:e0177537.
    PubMed     Text format     Abstract available

  27. ZHENG Y, Xu S, Liu J, Zhao Y, et al
    Genetic diversity and population structure of Chinese natural bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers.
    PLoS One. 2017;12:e0177508.
    PubMed     Text format     Abstract available

  28. DIEZ BENAVENTE E, Ward Z, Chan W, Mohareb FR, et al
    Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure.
    PLoS One. 2017;12:e0177134.
    PubMed     Text format     Abstract available

  29. KHOMTCHOUK BB, Hennessy JR, Wahlestedt C
    shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.
    PLoS One. 2017;12:e0176334.
    PubMed     Text format     Abstract available

  30. PASCUAL M, Rives B, Schunter C, Macpherson E, et al
    Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea.
    PLoS One. 2017;12:e0176419.
    PubMed     Text format     Abstract available

  31. MONTANA L, Caniglia R, Galaverni M, Fabbri E, et al
    Combining phylogenetic and demographic inferences to assess the origin of the genetic diversity in an isolated wolf population.
    PLoS One. 2017;12:e0176560.
    PubMed     Text format     Abstract available

  32. YU H, Zhang Y, Wang Z, Liu L, et al
    Diverse range dynamics and dispersal routes of plants on the Tibetan Plateau during the late Quaternary.
    PLoS One. 2017;12:e0177101.
    PubMed     Text format     Abstract available

  33. ZHOU Y, Wang S, Zhu H, Li P, et al
    Phylogeny and biogeography of South Chinese brown frogs (Ranidae, Anura).
    PLoS One. 2017;12:e0175113.
    PubMed     Text format     Abstract available

  34. IBANEZ MI, Cabello P, Luque-Almagro VM, Saez LP, et al
    Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).
    PLoS One. 2017;12:e0172908.
    PubMed     Text format     Abstract available

  35. HAKIMI O, Ternette N, Murphy R, Kessler BM, et al
    A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue.
    PLoS One. 2017;12:e0177656.
    PubMed     Text format     Abstract available

  36. XIAO W, Chen P, Xiao J, Wang, et al
    Comparative transcriptome profiling of a thermal resistant vs. sensitive silkworm strain in response to high temperature under stressful humidity condition.
    PLoS One. 2017;12:e0177641.
    PubMed     Text format     Abstract available

  37. EVERS C, Fischer C, Dikow N, Schott S, et al
    Familial breast cancer: Genetic counseling over time, including patients expectations and initiators considering the Angelina Jolie effect.
    PLoS One. 2017;12:e0177893.
    PubMed     Text format     Abstract available

  38. PINSONNEAULT JK, Frater JT, Kompa B, Mascarenhas R, et al
    Intronic SNP in ESR1 encoding human estrogen receptor alpha is associated with brain ESR1 mRNA isoform expression and behavioral traits.
    PLoS One. 2017;12:e0179020.
    PubMed     Text format     Abstract available

  39. MOHR T, Haudek-Prinz V, Slany A, Grillari J, et al
    Proteome profiling in IL-1beta and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis.
    PLoS One. 2017;12:e0179065.
    PubMed     Text format     Abstract available

  40. PARK KH, Greenwood-Quaintance KE, Uhl JR, Cunningham SA, et al
    Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.
    PLoS One. 2017;12:e0179003.
    PubMed     Text format     Abstract available

  41. SINGH V, Singh B, Joshi R, Jaju P, et al
    Changes in the leaf proteome profile of Withania somnifera (L.) Dunal in response to Alternaria alternata infection.
    PLoS One. 2017;12:e0178924.
    PubMed     Text format     Abstract available

  42. ZHOU DX, Zhao Y, Baker JA, Gu Q, et al
    The effect of alcohol on the differential expression of cluster of differentiation 14 gene, associated pathways, and genetic network.
    PLoS One. 2017;12:e0178689.
    PubMed     Text format     Abstract available

  43. CSOSZ E, Labiscsak P, Kallo G, Markus B, et al
    Proteomics investigation of OSCC-specific salivary biomarkers in a Hungarian population highlights the importance of identification of population-tailored biomarkers.
    PLoS One. 2017;12:e0177282.
    PubMed     Text format     Abstract available

  44. UGARTE TORRES A, Chu A, Read R, MacDonald J, et al
    The epidemiology of Staphylococcus aureus carriage in patients attending inner city sexually transmitted infections and community clinics in Calgary, Canada.
    PLoS One. 2017;12:e0178557.
    PubMed     Text format     Abstract available

  45. GUPTA S, Bhar A, Chatterjee M, Ghosh A, et al
    Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack.
    PLoS One. 2017;12:e0178164.
    PubMed     Text format     Abstract available

  46. TEIXEIRA ADD, Games PD, Katz BB, Tomich JM, et al
    Proteomic analysis in the Dufour's gland of Africanized Apis mellifera workers (Hymenoptera: Apidae).
    PLoS One. 2017;12:e0177415.
    PubMed     Text format     Abstract available

  47. CAMERON SJS, Lewis KE, Huws SA, Hegarty MJ, et al
    A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.
    PLoS One. 2017;12:e0177062.
    PubMed     Text format     Abstract available

  48. WANG X, Shojaie A, Zhang Y, Shelley D, et al
    Exploratory plasma proteomic analysis in a randomized crossover trial of aspirin among healthy men and women.
    PLoS One. 2017;12:e0178444.
    PubMed     Text format     Abstract available

  49. YAMAZAKI T, Hatano Y, Handa T, Kato S, et al
    Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.
    PLoS One. 2017;12:e0177764.
    PubMed     Text format     Abstract available

  50. BOUCHEHAM A, Sommard V, Zehraoui F, Boualem A, et al
    IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data.
    PLoS One. 2017;12:e0179787.
    PubMed     Text format     Abstract available


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