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Articles published in PLoS Genet

Retrieve available abstracts of 82 articles:
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Single Articles


    July 2016
  1. MATSUI T, Ehrenreich IM
    Gene-Environment Interactions in Stress Response Contribute Additively to a Genotype-Environment Interaction.
    PLoS Genet. 2016;12:e1006158.
    PubMed     Text format     Abstract available


  2. MORALES JC, Richard P, Patidar PL, Motea EA, et al
    XRN2 Links Transcription Termination to DNA Damage and Replication Stress.
    PLoS Genet. 2016;12:e1006107.
    PubMed     Text format     Abstract available


    June 2016
  3. BIRNEY E, Smith GD, Greally JM
    Epigenome-wide Association Studies and the Interpretation of Disease -Omics.
    PLoS Genet. 2016;12:e1006105.
    PubMed     Text format     Abstract available


  4. KAUTT AF, Machado-Schiaffino G, Meyer A
    Multispecies Outcomes of Sympatric Speciation after Admixture with the Source Population in Two Radiations of Nicaraguan Crater Lake Cichlids.
    PLoS Genet. 2016;12:e1006157.
    PubMed     Text format     Abstract available


  5. SHIVER AL, Osadnik H, Kritikos G, Li B, et al
    A Chemical-Genomic Screen of Neglected Antibiotics Reveals Illicit Transport of Kasugamycin and Blasticidin S.
    PLoS Genet. 2016;12:e1006124.
    PubMed     Text format     Abstract available


  6. WALLBERG A, Pirk CW, Allsopp MH, Webster MT, et al
    Identification of Multiple Loci Associated with Social Parasitism in Honeybees.
    PLoS Genet. 2016;12:e1006097.
    PubMed     Text format     Abstract available


  7. THOUVENOT P, Ben Yamin B, Fourriere L, Lescure A, et al
    Functional Assessment of Genetic Variants with Outcomes Adapted to Clinical Decision-Making.
    PLoS Genet. 2016;12:e1006096.
    PubMed     Text format     Abstract available


  8. BARSH GS, Copenhaver GP
    The Language of Genetics In the Interviews of Jane Gitschier.
    PLoS Genet. 2016;12:e1006115.
    PubMed     Text format    


    April 2016
  9. WILKINS JF, McHale PT, Gervin J, Lander AD, et al
    Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis.
    PLoS Genet. 2016;12:e1006003.
    PubMed     Text format     Abstract available


  10. RACIMO F, Renaud G, Slatkin M
    Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.
    PLoS Genet. 2016;12:e1005972.
    PubMed     Text format     Abstract available


    March 2016
  11. SCHRIDER DR, Kern AD
    S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning.
    PLoS Genet. 2016;12:e1005928.
    PubMed     Text format     Abstract available


  12. SHAPIRO BJ, Leducq JB, Mallet J
    What Is Speciation?
    PLoS Genet. 2016;12:e1005860.
    PubMed     Text format     Abstract available


  13. BOOKER BM, Friedrich T, Mason MK, VanderMeer JE, et al
    Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus.
    PLoS Genet. 2016;12:e1005738.
    PubMed     Text format     Abstract available


  14. YANG HC, Chu SK, Huang CL, Kuo HW, et al
    Genome-Wide Pharmacogenomic Study on Methadone Maintenance Treatment Identifies SNP rs17180299 and Multiple Haplotypes on CYP2B6, SPON1, and GSG1L Associated with Plasma Concentrations of Methadone R- and S-enantiomers in Heroin-Dependent Patients.
    PLoS Genet. 2016;12:e1005910.
    PubMed     Text format     Abstract available


  15. SVETEC N, Cridland JM, Zhao L, Begun DJ, et al
    The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster.
    PLoS Genet. 2016;12:e1005869.
    PubMed     Text format     Abstract available


  16. BOITARD S, Rodriguez W, Jay F, Mona S, et al
    Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach.
    PLoS Genet. 2016;12:e1005877.
    PubMed     Text format     Abstract available


  17. FREEDMAN AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, et al
    Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs.
    PLoS Genet. 2016;12:e1005851.
    PubMed     Text format     Abstract available


  18. SUL JH, Bilow M, Yang WY, Kostem E, et al
    Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models.
    PLoS Genet. 2016;12:e1005849.
    PubMed     Text format     Abstract available


    February 2016
  19. MARQUES DA, Lucek K, Meier JI, Mwaiko S, et al
    Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback.
    PLoS Genet. 2016;12:e1005887.
    PubMed     Text format     Abstract available


  20. ROEHE R, Dewhurst RJ, Duthie CA, Rooke JA, et al
    Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance.
    PLoS Genet. 2016;12:e1005846.
    PubMed     Text format     Abstract available


  21. BLOW MJ, Clark TA, Daum CG, Deutschbauer AM, et al
    The Epigenomic Landscape of Prokaryotes.
    PLoS Genet. 2016;12:e1005854.
    PubMed     Text format     Abstract available


  22. CORWIN JA, Copeland D, Feusier J, Subedy A, et al
    The Quantitative Basis of the Arabidopsis Innate Immune System to Endemic Pathogens Depends on Pathogen Genetics.
    PLoS Genet. 2016;12:e1005789.
    PubMed     Text format     Abstract available


  23. COOKE TF, Yee MC, Muzzio M, Sockell A, et al
    GBStools: A Statistical Method for Estimating Allelic Dropout in Reduced Representation Sequencing Data.
    PLoS Genet. 2016;12:e1005631.
    PubMed     Text format     Abstract available


    January 2016
  24. BURROWS CK, Banovich NE, Pavlovic BJ, Patterson K, et al
    Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs.
    PLoS Genet. 2016;12:e1005793.
    PubMed     Text format     Abstract available


  25. WANG Y, Thompson WK, Schork AJ, Holland D, et al
    Leveraging Genomic Annotations and Pleiotropic Enrichment for Improved Replication Rates in Schizophrenia GWAS.
    PLoS Genet. 2016;12:e1005803.
    PubMed     Text format     Abstract available


  26. OESER ML, Amen T, Nadel CM, Bradley AI, et al
    Dynamic Sumoylation of a Conserved Transcription Corepressor Prevents Persistent Inclusion Formation during Hyperosmotic Stress.
    PLoS Genet. 2016;12:e1005809.
    PubMed     Text format     Abstract available


  27. BRADBURD GS, Ralph PL, Coop GM
    A Spatial Framework for Understanding Population Structure and Admixture.
    PLoS Genet. 2016;12:e1005703.
    PubMed     Text format     Abstract available


    December 2015
  28. PINEDA S, Real FX, Kogevinas M, Carrato A, et al
    Integration Analysis of Three Omics Data Using Penalized Regression Methods: An Application to Bladder Cancer.
    PLoS Genet. 2015;11:e1005689.
    PubMed     Text format     Abstract available


    August 2015
  29. DESAI PR, van Wijlick L, Kurtz D, Juchimiuk M, et al
    Hypoxia and Temperature Regulated Morphogenesis in Candida albicans.
    PLoS Genet. 2015;11:e1005447.
    PubMed     Text format     Abstract available


    July 2015
  30. ROACH DJ, Burton JN, Lee C, Stackhouse B, et al
    A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota.
    PLoS Genet. 2015;11:e1005413.
    PubMed     Text format     Abstract available


    April 2015
  31. SAMAD H, Coll F, Preston MD, Ocholla H, et al
    Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites.
    PLoS Genet. 2015;11:e1005131.
    PubMed     Text format     Abstract available


    March 2015
  32. VILLANUEVA P, Nudel R, Hoischen A, Fernandez MA, et al
    Exome sequencing in an admixed isolated population indicates NFXL1 variants confer a risk for specific language impairment.
    PLoS Genet. 2015;11:e1004925.
    PubMed     Text format     Abstract available


  33. SCHUMER M, Cui R, Rosenthal GG, Andolfatto P, et al
    Reproductive isolation of hybrid populations driven by genetic incompatibilities.
    PLoS Genet. 2015;11:e1005041.
    PubMed     Text format     Abstract available


  34. WILLIAMS BP, Pignatta D, Henikoff S, Gehring M, et al
    Methylation-sensitive expression of a DNA demethylase gene serves as an epigenetic rheostat.
    PLoS Genet. 2015;11:e1005142.
    PubMed     Text format     Abstract available


  35. CHIMUSA ER, Meintjies A, Tchanga M, Mulder N, et al
    A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations.
    PLoS Genet. 2015;11:e1005052.
    PubMed     Text format     Abstract available


  36. DORSHORST B, Harun-Or-Rashid M, Bagherpoor AJ, Rubin CJ, et al
    A genomic duplication is associated with ectopic eomesodermin expression in the embryonic chicken comb and two duplex-comb phenotypes.
    PLoS Genet. 2015;11:e1004947.
    PubMed     Text format     Abstract available


    February 2015
  37. GARUD NR, Messer PW, Buzbas EO, Petrov DA, et al
    Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps.
    PLoS Genet. 2015;11:e1005004.
    PubMed     Text format     Abstract available


  38. SCHNEIDER A, Henegar C, Day K, Absher D, et al
    Recurrent evolution of melanism in South American felids.
    PLoS Genet. 2015;11:e1004892.
    PubMed     Text format     Abstract available


  39. ZANDERS SE, Malik HS
    R2d2 and Hyperdrive Mechanisms (in Mouse Meiosis).
    PLoS Genet. 2015;11:e1004950.
    PubMed     Text format    


  40. DIDION JP, Morgan AP, Clayshulte AM, Mcmullan RC, et al
    A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.
    PLoS Genet. 2015;11:e1004850.
    PubMed     Text format     Abstract available


  41. FEULNER PG, Chain FJ, Panchal M, Huang Y, et al
    Genomics of divergence along a continuum of parapatric population differentiation.
    PLoS Genet. 2015;11:e1004966.
    PubMed     Text format     Abstract available


  42. MANJURANO A, Sepulveda N, Nadjm B, Mtove G, et al
    African glucose-6-phosphate dehydrogenase alleles associated with protection from severe malaria in heterozygous females in Tanzania.
    PLoS Genet. 2015;11:e1004960.
    PubMed     Text format     Abstract available


    January 2015
  43. ZENG Y, Wang G, Yang E, Ji G, et al
    Aberrant gene expression in humans.
    PLoS Genet. 2015;11:e1004942.
    PubMed     Text format     Abstract available


  44. FAIVRE D, Baumgartner J
    The combination of random mutagenesis and sequencing highlight the role of unexpected genes in an intractable organism.
    PLoS Genet. 2015;11:e1004895.
    PubMed     Text format    


  45. MAKAREVITCH I, Waters AJ, West PT, Stitzer M, et al
    Transposable elements contribute to activation of maize genes in response to abiotic stress.
    PLoS Genet. 2015;11:e1004915.
    PubMed     Text format     Abstract available


  46. JOSEPH B, Corwin JA, Kliebenstein DJ
    Genetic variation in the nuclear and organellar genomes modulates stochastic variation in the metabolome, growth, and defense.
    PLoS Genet. 2015;11:e1004779.
    PubMed     Text format     Abstract available


  47. MANIVANNAN SN, Lai LB, Gopalan V, Simcox A, et al
    Transcriptional control of an essential ribozyme in Drosophila reveals an ancient evolutionary divide in animals.
    PLoS Genet. 2015;11:e1004893.
    PubMed     Text format     Abstract available


  48. RANJAN A, Townsley BT, Ichihashi Y, Sinha NR, et al
    An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia.
    PLoS Genet. 2015;11:e1004900.
    PubMed     Text format     Abstract available


  49. BURKE W, Korngiebel DM
    Closing the gap between knowledge and clinical application: challenges for genomic translation.
    PLoS Genet. 2015;11:e1004978.
    PubMed     Text format     Abstract available


    October 2014
  50. JUNG JG, Stoeck A, Guan B, Wu RC, et al
    Notch3 Interactome Analysis Identified WWP2 as a Negative Regulator of Notch3 Signaling in Ovarian Cancer.
    PLoS Genet. 2014;10:e1004751.
    PubMed     Text format     Abstract available


    August 2014
  51. CARNEIRO M, Albert FW, Afonso S, Pereira RJ, et al
    The genomic architecture of population divergence between subspecies of the European rabbit.
    PLoS Genet. 2014;10:e1003519.
    PubMed     Text format     Abstract available


    July 2014
  52. LIM ET, Wurtz P, Havulinna AS, Palta P, et al
    Distribution and medical impact of loss-of-function variants in the Finnish founder population.
    PLoS Genet. 2014;10:e1004494.
    PubMed     Text format     Abstract available


  53. ZHANG W, Fan Z, Han E, Hou R, et al
    Hypoxia adaptations in the grey wolf (Canis lupus chanco) from Qinghai-Tibet Plateau.
    PLoS Genet. 2014;10:e1004466.
    PubMed     Text format     Abstract available


  54. MARCHECO-TERUEL B, Parra EJ, Fuentes-Smith E, Salas A, et al
    Cuba: exploring the history of admixture and the genetic basis of pigmentation using autosomal and uniparental markers.
    PLoS Genet. 2014;10:e1004488.
    PubMed     Text format     Abstract available


  55. HINCH AG, Altemose N, Noor N, Donnelly P, et al
    Recombination in the human Pseudoautosomal region PAR1.
    PLoS Genet. 2014;10:e1004503.
    PubMed     Text format     Abstract available


  56. MAKINEN VP, Civelek M, Meng Q, Zhang B, et al
    Integrative genomics reveals novel molecular pathways and gene networks for coronary artery disease.
    PLoS Genet. 2014;10:e1004502.
    PubMed     Text format     Abstract available


  57. DELAUX PM, Varala K, Edger PP, Coruzzi GM, et al
    Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution.
    PLoS Genet. 2014;10:e1004487.
    PubMed     Text format     Abstract available


  58. BRYOIS J, Buil A, Evans DM, Kemp JP, et al
    Cis and trans effects of human genomic variants on gene expression.
    PLoS Genet. 2014;10:e1004461.
    PubMed     Text format     Abstract available


    June 2014
  59. MORADIGARAVAND D, Kouyos R, Hinkley T, Haddad M, et al
    Recombination Accelerates Adaptation on a Large-Scale Empirical Fitness Landscape in HIV-1.
    PLoS Genet. 2014;10:e1004439.
    PubMed     Text format     Abstract available


    May 2014
  60. WONG LP, Lai JK, Saw WY, Ong RT, et al
    Insights into the genetic structure and diversity of 38 South Asian Indians from deep whole-genome sequencing.
    PLoS Genet. 2014;10:e1004377.
    PubMed     Text format     Abstract available


  61. SIKORA M, Carpenter ML, Moreno-Estrada A, Henn BM, et al
    Population genomic analysis of ancient and modern genomes yields new insights into the genetic ancestry of the Tyrolean Iceman and the genetic structure of Europe.
    PLoS Genet. 2014;10:e1004353.
    PubMed     Text format     Abstract available


    April 2014
  62. STARK AL, Hause RJ Jr, Gorsic LK, Antao NN, et al
    Protein quantitative trait loci identify novel candidates modulating cellular response to chemotherapy.
    PLoS Genet. 2014;10:e1004192.
    PubMed     Text format     Abstract available


    March 2014
  63. DECKER JE, McKay SD, Rolf MM, Kim J, et al
    Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
    PLoS Genet. 2014;10:e1004254.
    PubMed     Text format     Abstract available


  64. KUMAR P P, Franklin S, Emechebe U, Hu H, et al
    TBX3 regulates splicing in vivo: a novel molecular mechanism for Ulnar-mammary syndrome.
    PLoS Genet. 2014;10:e1004247.
    PubMed     Text format     Abstract available


  65. GOOD BH, Walczak AM, Neher RA, Desai MM, et al
    Genetic diversity in the interference selection limit.
    PLoS Genet. 2014;10:e1004222.
    PubMed     Text format     Abstract available


  66. FORNI D, Cagliani R, Tresoldi C, Pozzoli U, et al
    An evolutionary analysis of antigen processing and presentation across different timescales reveals pervasive selection.
    PLoS Genet. 2014;10:e1004189.
    PubMed     Text format     Abstract available


  67. AGUADO C, Gaya-Vidal M, Villatoro S, Oliva M, et al
    Validation and genotyping of multiple human polymorphic inversions mediated by inverted repeats reveals a high degree of recurrence.
    PLoS Genet. 2014;10:e1004208.
    PubMed     Text format     Abstract available


  68. WU J, Li Y, Jiang R
    Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.
    PLoS Genet. 2014;10:e1004237.
    PubMed     Text format     Abstract available


  69. XIE JB, Du Z, Bai L, Tian C, et al
    Comparative genomic analysis of N2-fixing and non-N2-fixing Paenibacillus spp.: organization, evolution and expression of the nitrogen fixation genes.
    PLoS Genet. 2014;10:e1004231.
    PubMed     Text format     Abstract available


  70. CLAES P, Liberton DK, Daniels K, Rosana KM, et al
    Modeling 3D facial shape from DNA.
    PLoS Genet. 2014;10:e1004224.
    PubMed     Text format     Abstract available


  71. WEISCHER M, Bojesen SE, Nordestgaard BG
    Telomere shortening unrelated to smoking, body weight, physical activity, and alcohol intake: 4,576 general population individuals with repeat measurements 10 years apart.
    PLoS Genet. 2014;10:e1004191.
    PubMed     Text format     Abstract available


  72. FARKASH-AMAR S, Zimmer A, Eden E, Cohen A, et al
    Noise genetics: inferring protein function by correlating phenotype with protein levels and localization in individual human cells.
    PLoS Genet. 2014;10:e1004176.
    PubMed     Text format     Abstract available


  73. CUSANOVICH DA, Pavlovic B, Pritchard JK, Gilad Y, et al
    The functional consequences of variation in transcription factor binding.
    PLoS Genet. 2014;10:e1004226.
    PubMed     Text format     Abstract available


    February 2014
  74. FOLL M, Poh YP, Renzette N, Ferrer-Admetlla A, et al
    Influenza virus drug resistance: a time-sampled population genetics perspective.
    PLoS Genet. 2014;10:e1004185.
    PubMed     Text format     Abstract available


  75. TURNER LM, White MA, Tautz D, Payseur BA, et al
    Genomic networks of hybrid sterility.
    PLoS Genet. 2014;10:e1004162.
    PubMed     Text format     Abstract available


  76. QANBARI S, Pausch H, Jansen S, Somel M, et al
    Classic selective sweeps revealed by massive sequencing in cattle.
    PLoS Genet. 2014;10:e1004148.
    PubMed     Text format     Abstract available


  77. ENGELKEN J, Carnero-Montoro E, Pybus M, Andrews GK, et al
    Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa.
    PLoS Genet. 2014;10:e1004128.
    PubMed     Text format     Abstract available


  78. BABU M, Arnold R, Bundalovic-Torma C, Gagarinova A, et al
    Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.
    PLoS Genet. 2014;10:e1004120.
    PubMed     Text format     Abstract available


  79. BORNEMAN AR, Zeppel R, Chambers PJ, Curtin CD, et al
    Insights into the Dekkera bruxellensis genomic landscape: comparative genomics reveals variations in ploidy and nutrient utilisation potential amongst wine isolates.
    PLoS Genet. 2014;10:e1004161.
    PubMed     Text format     Abstract available


  80. ABRAHAM G, Tye-Din JA, Bhalala OG, Kowalczyk A, et al
    Accurate and robust genomic prediction of celiac disease using statistical learning.
    PLoS Genet. 2014;10:e1004137.
    PubMed     Text format     Abstract available


  81. BROSCHE M, Blomster T, Salojarvi J, Cui F, et al
    Transcriptomics and functional genomics of ROS-induced cell death regulation by RADICAL-INDUCED CELL DEATH1.
    PLoS Genet. 2014;10:e1004112.
    PubMed     Text format     Abstract available


    January 2014
  82. LOHMUELLER KE
    The impact of population demography and selection on the genetic architecture of complex traits.
    PLoS Genet. 2014;10:e1004379.
    PubMed     Text format     Abstract available


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